Jörn Kalinowski
PEVZ-ID
472 Publikationen
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2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994435Host dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by Frankia cluster-2PUB | DOI | PubMed | Europe PMC
Berckx F, Van Nguyen T, Hilker R, Wibberg D, Battenberg K, Kalinowski J, Berry A, Pawlowski K (2024)
Journal of Experimental Botany: erae446. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2993996
Nanopore Sequencing for T-Cell Receptor Rearrangement Analysis in Cutaneous T-Cell LymphomaPUB | PDF | DOI | PubMed | Europe PMC
Cieslak C, Hain C, Rückert-Reed C, Busche T, Klages LJ, Schaper-Gerhardt K, Gutzmer R, Kalinowski J, Stadler R (2024)
Cancers 16(21): 3700. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994036Frankia [NiFe] uptake hydrogenases and genome reduction: different lineages of lossPUB | DOI | PubMed | Europe PMC
Pawlowski K, Wibberg D, Mehrabi S, Obaid NB, Patyi A, Berckx F, Nguyen H, Hagen M, Lundin D, Brachmann A, Blom J, et al. (2024)
FEMS Microbiology Ecology : fiae147. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2993270Mucosa-like differentiation of head and neck cancer cells is inducible and drives the epigenetic loss of cell malignancyPUB | DOI | WoS | PubMed | Europe PMC
Oppel F, Gendreizig S, Martinez-Ruiz L, Florido J, López-Rodríguez A, Pabla H, Loganathan L, Hose L, Kühnel P, Schmidt P, Schürmann M, et al. (2024)
Cell Death & Disease 15(10): 724. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992998
Genomic and fitness consequences of a near-extinction event in the northern elephant sealPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hoffman J, Vendrami D, Hench K, Chen R, Stoffel M, Kardos M, Amos W, Kalinowski J, Rickert D, Köhrer K, Wachtmeister T, et al. (2024)
Nature Ecology & Evolution. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992371Microenvironmental acidification by pneumococcal sugar consumption fosters barrier disruption and immune suppression in the human alveolus.PUB | DOI | PubMed | Europe PMC
Fatykhova D, Fritsch VN, Siebert K, Methling K, Lalk M, Busche T, Kalinowski J, Weiner J, Beule D, Bertrams W, Kohler TP, et al. (2024)
The European respiratory journal. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990875Classification of a novel Serratia species, isolated from a wound swab in North Rhine-Westphalia: Proposal of Serratia sarumanii sp. novPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Klages LJ, Kaup O, Busche T, Kalinowski J, Rückert-Reed C (2024)
Systematic and Applied Microbiology: 126527. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990920
Sigma Factor Engineering in Actinoplanes sp. SE50/110: Expression of the Alternative Sigma Factor Gene ACSP50_0507 (sigmaHAs) Enhances Acarbose Yield and Alters Cell MorphologyPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schlüter L, Busche T, Bondzio L, Hütten A, Niehaus K, Schneiker-Bekel S, Pühler A, Kalinowski J (2024)
Microorganisms 12(6): 1241. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990923
Role of MalQ Enzyme in a Reconstructed Maltose/Maltodextrin Pathway in Actinoplanes sp. SE50/110PUB | PDF | DOI | WoS | PubMed | Europe PMC
März C, Nölting S, Wollenschläger L, Pühler A, Kalinowski J (2024)
Microorganisms 12(6): 1221. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990736
Hunting for pigments in bacterial settlers of the Great Pacific Garbage PatchPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Scales BS, Hassenrück C, Moldaenke L, Hassa J, Rückert-Reed C, Rummel C, Völkner C, Rynek R, Busche T, Kalinowski J, Jahnke A, et al. (2024)
Environmental Microbiology 26(6). -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988657Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breastPUB | DOI | WoS | PubMed | Europe PMC
Lick S, Wibberg D, Busche T, Blom J, Grimmler C, Goesmann A, Kalinowski J (2024)
International Journal of Systematic and Evolutionary Microbiology 74(4). -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986093Actinoplanes oblitus sp. nov., producing the glycopeptide antibiotic A477PUB | DOI | WoS | PubMed | Europe PMC
Yushchuk O, Binda E, Rückert-Reed C, Berini F, Fedorenko V, Kalinowski J, Marinelli F (2024)
International Journal of Systematic and Evolutionary Microbiology 74(1). -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988965Isolation, characterisation and description of the roseoflavin producer Streptomyces berlinensis sp. nov.PUB | DOI | WoS | PubMed | Europe PMC
Liunardo JJ, Messerli S, Gregotsch A-K, Lang S, Schlosser K, Rückert-Reed C, Busche T, Kalinowski J, Zischka M, Weller P, Nouioui I, et al. (2024)
Environmental Microbiology Reports 16(2): e13266. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988344Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemispherePUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Wibberg D, Brachmann A, Morrison C, Obaid NB, Blom J, Kalinowski J, Wall LG, Pawlowski K (2024)
FEMS Microbiology Ecology: fiae042. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988649An autonomous plasmid as an inovirus phage satellitePUB | DOI | WoS | PubMed | Europe PMC
Schmid N, Brandt D, Walasek C, Rolland C, Wittmann J, Fischer D, Müsken M, Kalinowski J, Thormann K (2024)
Applied and Environmental Microbiology : e0024624. -
2024 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988475Nanopore sequencing for T-cell receptor repertoire analysis in patients with cutaneous T-cell lymphomaPUB | DOI | WoS
Cieslak C, Rückert-Reed C, Hain C, Busche T, Kalinowski J, Schaper-Gerhardt K, Gutzmer R, Stadler R (2024)
Experimental Dermatology 33(3): P100. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986496Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant BioprocessPUB | DOI | WoS | PubMed | Europe PMC
Helm T, Stausberg T, Previati M, Ernst P, Klein B, Busche T, Kalinowski J, Wibberg D, Wiechert W, Claerhout L, Wierckx N, et al. (2024)
Microbial Cell Factories 23(1): 29. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986096Enhanced protein secretion in reduced genome strains of Streptomyces lividansPUB | DOI | WoS | PubMed | Europe PMC
Hamed MB, Busche T, Simoens K, Carpentier S, Kormanec J, Van Mellaert L, Anné J, Kalinowski J, Bernaerts K, Karamanou S, Economou A (2024)
Microbial Cell Factories 23(1): 13. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985929Unraveling intragenomic polymorphisms in the high-quality genome of Hypoxylaceae: a comprehensive study of the rDNA cistronPUB | DOI | WoS
Cedeno-Sanchez M, Cheng T, Lambert C, Kolarík M, Kuhnert E, Cox RJ, Kalinowski J, Verwaaijen B, Stadler M (2024)
Mycological Progress 23(1): 5. -
2023 | Preprint | Veröffentlicht | PUB-ID: 2991402Inducible mucosa-like differentiation of head and neck cancer cells drives the epigenetically determined loss of cell malignancyPUB | DOI
Oppel F, Gendreizig S, Martinez-Ruiz L, Florido J, López-Rodríguez A, Pabla H, Loganathan L, Hose L, Kühnel P, Schmidt P, Schürmann M, et al. (2023)
bioRxiv. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2982191CYP19A1 mediates severe SARS-CoV-2 disease outcome in malesPUB | DOI | WoS | PubMed | Europe PMC
Stanelle-Bertram S, Beck S, Mounogou NK, Schaumburg B, Stoll F, Al Jawazneh A, Schmal Z, Bai T, Zickler M, Beythien G, Becker K, et al. (2023)
Cell Reports Medicine 4(9): 101152. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980686
Metabolic engineering of Corynebacterium glutamicum for fatty alcohol production from glucose and wheat straw hydrolysatePUB | PDF | DOI | WoS | PubMed | Europe PMC
Werner F, Schwardmann L, Siebert D, Rückert-Reed C, Kalinowski J, Wirth M-T, Hofer K, Takors R, Wendisch VF, Blombach B (2023)
Biotechnology for Biofuels and Bioproducts 16: 116. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2981183
Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bitzenhofer NL, Höfel C, Thies S, Weiler AJ, Eberlein C, Heipieper HJ, Batra-Safferling R, Sundermeyer P, Heidler T, Sachse C, Busche T, et al. (2023)
Microbial Biotechnology. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424
Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE)PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Schmidt P, Brandt D, Busche T, Kalinowski J (2023)
Microorganisms 11(6): 1388. -
2023 | Preprint | Veröffentlicht | PUB-ID: 2987224Long-read sequencing shows complex structural variants in tumor-stage mycosis fungoidesPUB | DOI | Preprint
Hain C, Stadler R, Kalinowski J (2023)
bioRxiv. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985593Systems metabolic engineering of the primary and secondary metabolism of Streptomyces albidoflavus enhances production of the reverse antibiotic nybomycin against multi-resistant Staphylococcus aureusPUB | DOI | WoS | PubMed | Europe PMC
Stegmüller J, Rodriguez Estevez M, Shu W, Gläser L, Myronovskyi M, Rückert-Reed C, Kalinowski J, Luzhetskyy A, Wittmann C (2023)
Metabolic Engineering 81. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986284Rapid discovery of terpene tailoring enzymes for total biosynthesisPUB | DOI | WoS | PubMed | Europe PMC
Sun Y, Gerke J, Becker K, Kuhnert E, Verwaaijen B, Wibberg D, Kalinowski J, Stadler M, Cox RJ (2023)
Chemical Science 14(46): 13463-13467. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985583Histone binding of ASF1 is required for fruiting body development but not for genome stability in the filamentous fungus Sordaria macrosporaPUB | DOI | WoS | PubMed | Europe PMC
Breuer J, Busche T, Kalinowski J, Nowrousian M (2023)
mBio: e0289623. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978776
The 4-alpha-Glucanotransferase AcbQ Is Involved in Acarbose Modification in Actinoplanes sp. SE50/110PUB | PDF | DOI | WoS | PubMed | Europe PMC
Nölting S, März C, Jacob L, Persicke M, Schneiker-Bekel S, Kalinowski J (2023)
Microorganisms 11(4): 848. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2977932
Comparative Assessment of Two Commercial Real-Time PCR Assays for the Diagnosis of Trypanosoma cruzi DNA in SerumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kann S, Concha G, Weinreich F, Hahn A, Rückert C, Kalinowski J, Landt O, Frickmann H (2023)
Microorganisms 11(4): 901. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985907From waste to health-supporting molecules: biosynthesis of natural products from lignin-, plastic- and seaweed-based monomers using metabolically engineered Streptomyces lividansPUB | DOI | WoS | PubMed | Europe PMC
Seo K, Shu W, Rückert-Reed C, Gerlinger P, Erb TJ, Kalinowski J, Wittmann C (2023)
Microbial Cell Factories 22(1): 262. -
2023 | Preprint | Veröffentlicht | PUB-ID: 2985153Deletion of SMC renders FtsK essential inPUB | DOI
Peng F, Giacomelli G, Meyer F, Linder M, Haak M, Rückert-Reed C, Weiß M, Kalinowski J, Bramkamp M (2023)
bioRxiv. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984921Staphylococcus aureus adapts to the immunometabolite itaconic acid by inducing acid and oxidative stress responses including S-bacillithiolations and S-itaconationsPUB | DOI | WoS | PubMed | Europe PMC
Van Loi V, Busche T, Kuropka B, Müller S, Methling K, Lalk M, Kalinowski J, Antelmann H (2023)
Free Radical Biology and Medicine 208: 859-876. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984747Discovery and overproduction of novel highly bioactive pamamycins through transcriptional engineering of the biosynthetic gene clusterPUB | DOI | WoS | PubMed | Europe PMC
Eckert N, Rebets Y, Horbal L, Zapp J, Herrmann J, Busche T, Müller R, Kalinowski J, Luzhetskyy A (2023)
Microbial Cell Factories 22(1): 233. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2984306The neutrophil oxidant hypothiocyanous acid causes a thiol-specific stress response and an oxidative shift of the bacillithiol redox potential in Staphylococcus aureusPUB | DOI | WoS | PubMed | Europe PMC
Loi VV, Busche T, Schnaufer F, Kalinowski J, Antelmann H (2023)
Microbiology Spectrum : e0325223. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984307Systems biology of industrial oxytetracycline production in Streptomyces rimosus: the secrets of a mutagenized hyperproducerPUB | DOI | WoS | PubMed | Europe PMC
Beganovic S, Rückert-Reed C, Sucipto H, Shu W, Gläser L, Patschkowski T, Struck B, Kalinowski J, Luzhetskyy A, Wittmann C (2023)
Microbial Cell Factories 22(1): 222. -
2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2984072T-cell receptor clonality analyses using nanopore sequencing for cutaneous T-cell lymphomaPUB | DOI | WoS
Cieslak C, Rückert-Reed C, Busche T, Hain C, Kalinowski J, Schaper-Gerhardt K, Gutzmer R, Stadler R (2023)
In: The Abstract from The EORTC Cutaneous Lymphoma Tumour Group Annual Meeting. European Journal of Cancer, 190(Suppl. 1). Oxford: Elsevier . -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983200Free-floating extracellular DNA (exDNA) in different wastewaters: Status quo on exDNA-associated antimicrobial resistance genesPUB | DOI | WoS | PubMed | Europe PMC
Savin M, Hammerl JA, Hassa J, Hembach N, Kalinowski J, Schwartz T, Droop F, Mutters NT (2023)
Environmental Pollution 337: 122560. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980373
Characterization of the Antibacterial Activity of Quinone-Based Compounds Originating from the Alnumycin Biosynthetic Gene Cluster of a Streptomyces IsolatePUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Sagurna L, Heinrich S, Kaufmann L-S, Rückert-Reed C, Busche T, Wolf A, Eickhoff J, Klebl B, Kalinowski J, Bandow JE (2023)
Antibiotics 12(7): 1116. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978071Complete Genome Sequence of the Carboxydotrophic Knallgas Bacterium Pseudomonas carboxydohydrogena Strain DSM 1083PUB | DOI | WoS | PubMed | Europe PMC
Siebert D, Busche T, Saydam E, Kalinowski J, Rückert-Reed C, Blombach B (2023)
Microbiology Resource Announcements. -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967760Bioassay-Guided Fractionation Leads to the Detection of Cholic Acid Generated by the Rare Thalassomonas sp.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Pheiffer F, Schneider YK-H, Hansen EH, Andersen JH, Isaksson J, Busche T, Rückert C, Kalinowski J, Zyl L van, Trindade M (2023)
Marine Drugs 21(1): 2. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968186
Primary head and neck cancer cell cultures are susceptible to proliferation of Epstein-Barr virus infected lymphocytesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Shao S, Scholtz L-U, Gendreizig S, Martínez-Ruiz L, Florido J, Escames G, Schürmann M, Hain C, Hose L, Mentz A, Schmidt P, et al. (2023)
BMC Cancer 23(1): 47. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963726
Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiotaPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Maraci Ö, Antonatou-Papaioannou A, Jünemann S, Engel K, Castillo-Gutiérrez O, Busche T, Kalinowski J, Caspers B (2022)
Microbiome 10(1): 202. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965769
Unraveling the Structural Variations of Early-Stage Mycosis Fungoides—CD3 Based Purification and Third Generation Sequencing as Novel Tools for the Genomic Landscape in CTCLPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hain C, Stadler R, Kalinowski J (2022)
Cancers 14(18): 4466. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959607Sezary syndrome shows whole genome duplication as a late event in tumor evolutionPUB | DOI | WoS | PubMed | Europe PMC
Hain C, Stadler R, Kalinowski J (2022)
The Journal of investigative dermatology 142(6): 1755-1758. -
2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967517
The MerR-family regulator NmlR is involved in the defense against oxidative stress in Streptococcus pneumoniaePUB | PDF | DOI | WoS | PubMed | Europe PMC
Fritsch VN, Linzner N, Busche T, Said N, Weise C, Kalinowski J, Wahl MC, Antelmann H (2022)
Molecular Microbiology . -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966253
Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate-Containing Natural Products in Diverse BacteriaPUB | PDF | DOI | WoS | PubMed | Europe PMC
Shi Y-M, Crames JJ, Czech L, Bozhuyuk KAJ, Shi Y-N, Hirschmann M, Lamberth S, Claus P, Paczia N, Rückert-Reed C, Kalinowski J, et al. (2022)
Angewandte Chemie International Edition 134(51). -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969696
Overlapping SigH and SigE sigma factor regulons in Corynebacterium glutamicumPUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
Busche T, Dostalova H, Rucka L, Holatko J, Barvik I, Stepanek V, Patek M, Kalinowski J (2022)
Frontiers in Microbiology 13: 1059649. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968933Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermediaPUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Bandong CM, Wibberg D, Kalinowski J, Willemse J, Brachmann A, Simbahan J, Pawlowski K (2022)
International Journal of Systematic and Evolutionary Microbiology 72(12). -
2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965718Head and neck cancer cells can differentiate and resemble their tissue of originPUB | DOI | WoS
Oppel F, Shao S, Gendreizig S, Kühnel P, Przybycin V, Hain C, Schmidt P, Schürmann M, Goon P, Niehaus K, Kalinowski J, et al. (2022)
In: Proceedings: AACR Annual Meeting 2022; April 8-13, 2022; New Orleans, LA. Cancer Research, 82(12_Supplement). American Association for Cancer Research (AACR): 111-111. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684
Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure inPUB | PDF | DOI | WoS | PubMed | Europe PMC
Behle A, Dietsch M, Goldschmidt L, Murugathas W, Berwanger LC, Burmester J, Yao L, Brandt D, Busche T, Kalinowski J, Hudson EP, et al. (2022)
Nucleic Acids Research: gkac1132. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624
Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modificationsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hertel O, Neuss A, Busche T, Brandt D, Kalinowski J, Bahnemann J, Noll T (2022)
Frontiers in Bioengineering and Biotechnology 10. -
2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967393Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074PUB | DOI | WoS | PubMed | Europe PMC
Tseduliak V-M, Dolia B, Ostash I, Lopatniuk M, Busche T, Ochi K, Kalinowski J, Luzhetskyy A, Fedorenko V, Ostash B (2022)
Journal of Applied Genetics. -
2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2966971Structural variations in low tumor fraction mycosis fungoides unraveled by nanopore sequencingPUB | DOI | WoS
Hain C, Cieslak C, Stadler R, Kalinowski J (2022)
European Journal of Cancer 173(Suppl. 1): S31. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966361A universal approach to gene expression engineeringPUB | DOI | WoS | PubMed | Europe PMC
Lale R, Tietze L, Fages-Lartaud M, Nesje J, Onsager I, Engelhardt K, Wong CFA, Akan M, Hummel N, Kalinowski J, Rückert C, et al. (2022)
Synthetic Biology 7(1): ysac017. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966354The transcriptomic landscape of Magnetospirillum gryphiswaldense during magnetosome biomineralizationPUB | DOI | WoS | PubMed | Europe PMC
Riese CN, Wittchen M, Jerome V, Freitag R, Busche T, Kalinowski J, Schueler D (2022)
BMC Genomics 23(1): 699. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965159
Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schafhauser T, Wibberg D, Binder A, Rückert C, Busche T, Wohlleben W, Kalinowski J (2022)
Journal of Fungi 8(8): 862. -
2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965777Entwicklung eines Protokolls für die Bestimmung der T-Zell-Rezeptor-Klonalität auf Basis der Nanopore-DNA-SequenzierungPUB | WoS
Cieslak C, Hain C, Rückert C, Klages LJ, Schaper-Ger-Hardt K, Kalinowski J, Gutzmer R (2022)
In: Special Issue:Abstractband anlässlich des, 32. Deutschen Hautkrebskongresses (ADO-Jahrestagung), 14.–17. September 2022. Journal der Deutschen Dermatologischen Gesellschaft, 20(Suppl. 3). Hoboken: Wiley: 102. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965454A tale of two lineages: how the strains of the earliest divergent symbiotic Frankia clade spread over the worldPUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Nguyen TV, Bandong CM, Lin H-H, Yamanaka T, Katayama S, Wibberg D, Blom J, Kalinowski J, Tateno M, Simbahan J, et al. (2022)
BMC Genomics 23(1): 602. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659psi-Footprinting approach for the identification of protein synthesis inhibitor producersPUB | DOI | WoS | PubMed | Europe PMC
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961676
Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite SynthesisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Ullmann L, Wibberg D, Busche T, Rückert C, Müsgens A, Kalinowski J, Blank LM (2022)
Journal of Fungi 8(3): 269. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961099
Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1EPUB | PDF | DOI | WoS | PubMed | Europe PMC
Klaus T, Ninck S, Albersmeier A, Busche T, Wibberg D, Jiang J, Elcheninov AG, Zayulina KS, Kaschani F, Braesen C, Overkleeft HS, et al. (2022)
Frontiers in Microbiology 12: 734039. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952449
Nanopore Sequencing Reveals Global Transcriptome Signatures of Mitochondrial and Ribosomal Gene Expressions in Various Human Cancer Stem-like Cell PopulationsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Witte KE, Hertel O, Windmöller BA, Helweg L, Höving AL, Knabbe C, Busche T, Greiner J, Kalinowski J, Noll T, Mertzlufft F, et al. (2021)
Cancers 13(5): 1136. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952704
Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomicsPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Berger C, Rückert C, Blom J, Rabaey K, Kalinowski J, Rosenbaum MA (2021)
Scientific Reports 11(1): 1370. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954736
Exploring the molecular content of CHO exosomes during bioprocessingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Keysberg C, Hertel O, Schelletter L, Busche T, Sochart C, Kalinowski J, Hoffrogge R, Otte K, Noll T (2021)
Applied Microbiology and Biotechnology 105(9): 3673-3689. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortiaPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954272
Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome InformationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Droste J, Rückert C, Kalinowski J, Hamed MB, Anné J, Simoens K, Bernaerts K, Economou A, Busche T (2021)
Frontiers in Microbiology 12: 604034. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950415
Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyon- Magnaporthe oryzae Pathosystems.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Zanini S, Secic E, Busche T, Galli M, Zheng Y, Kalinowski J, Kogel K-H (2021)
International journal of molecular sciences 22(2): 650. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene ClustersPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501
Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling PipelinesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Brandt D, Simunovic M, Busche T, Haak M, Belmann P, Jünemann S, Schulz T, Klages LJ, Vinke S, Beckstette M, Pohl E, et al. (2021)
Viruses 13(9): 1870. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960297
Construction of an IS-Free Corynebacterium glutamicum ATCC 13 032 Chassis Strain and Random Mutagenesis Using the Endogenous ISCg1 TransposasePUB | PDF | DOI | WoS | PubMed | Europe PMC
Linder M, Haak M, Botes A, Kalinowski J, Rückert C (2021)
Frontiers in Bioengineering and Biotechnology 9: 751334. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958416
Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeresPUB | PDF | DOI | WoS | PubMed | Europe PMC
Luttermann T, Rückert C, Wibberg D, Busche T, Schwarzhans J-P, Friehs K, Kalinowski J (2021)
NAR Genomics and Bioinformatics 3(4): 13. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2959606Evaluation of virulence potential of methicillin-sensitive and methicillin-resistant Staphylococcus aureus isolates from a German refugee cohortPUB | DOI | WoS | PubMed | Europe PMC
Creutz I, Busche T, Layer F, Bednarz H, Kalinowski J, Niehaus K (2021)
Travel medicine and infectious disease: 102204. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955527Complete genome sequence of Streptomyces cyanogenus S136, producer of anticancer angucycline landomycin APUB | DOI | WoS | PubMed | Europe PMC
Hrab P, Rückert C, Busche T, Ostash I, Kalinowski J, Fedorenko V, Yushchuk O, Ostash B (2021)
3 Biotech 11(6): 282 . -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2958743The two-Cys-type TetR repressor GbaA confers resistance under disulfide and electrophile stress in Staphylococcus aureusPUB | DOI | WoS | PubMed | Europe PMC
Van Loi V, Busche T, Fritsch VN, Weise C, Gruhlke MCH, Slusarenko AJ, Kalinowski J, Antelmann H (2021)
Free Radical Biology and Medicine 177: 120-131. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959487The Complex Transcriptional Landscape of Magnetosome Gene Clusters in Magnetospirillum gryphiswaldensePUB | DOI | WoS | PubMed | Europe PMC
Dziuba M, Riese CN, Borgert L, Wittchen M, Busche T, Kalinowski J, Uebe R, Schueler D (2021)
mSystems 6(5): e00893-21. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958745
The Desmin Mutation DES-c.735G>C Causes Severe Restrictive Cardiomyopathy by Inducing In-Frame Skipping of Exon-3PUB | PDF | DOI | WoS | PubMed | Europe PMC
Brodehl A, Hain C, Flottmann F, Ratnavadivel S, Gaertner A, Klauke B, Kalinowski J, Korperich H, Gummert J, Paluszkiewicz L, Deutsch M-A, et al. (2021)
Biomedicines 9(10): 1400. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958734Whole-Genome Sequence of Streptococcus pyogenes Strain 591, Belonging to the Genotype emm49PUB | DOI | WoS | PubMed | Europe PMC
Patenge N, Rückert C, Bull J, Strey K, Kalinowski J, Kreikemeyer B (2021)
Microbiology Resource Announcements 10(43): e0081621. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2957511The linear plasmid pSA3239 is essential for the replication of the Streptomyces lavendulae subsp. lavendulae CCM 3239 chromosome.PUB | DOI | WoS | PubMed | Europe PMC
Novakova R, Rückert C, Knirschova R, Feckova L, Busche T, Csolleiova D, Homerova D, Rezuchova B, Javorova R, Sevcikova B, Kalinowski J, et al. (2021)
Research in microbiology: 103870. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957898SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivoPUB | DOI | WoS | PubMed | Europe PMC
Fulde M, van Vorst K, Zhang K, Westermann AJ, Busche T, Huei YC, Welitschanski K, Froh I, Pagelow D, Plendl J, Pfarrer C, et al. (2021)
Gut microbes 13(1): 1973836. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955515Cross-Hemisphere Study Reveals Geographically Ubiquitous, Plastic-Specific Bacteria Emerging from the Rare and Unexplored BiospherePUB | DOI | WoS | PubMed | Europe PMC
Scales BS, Cable RN, Duhaime MB, Gerdts G, Fischer F, Fischer D, Mothes S, Hintzki L, Moldaenke L, Ruwe M, Kalinowski J, et al. (2021)
mSphere 6(3): e00851-20. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956157Coupling of the engineered DNA "mutator" to a biosensor as a new paradigm for activation of silent biosynthetic gene clusters in StreptomycesPUB | DOI | WoS | PubMed | Europe PMC
Sekurova ON, Sun Y-Q, Zehl M, Rückert C, Stich A, Busche T, Kalinowski J, Zotchev SB (2021)
Nucleic acids research: gkab583. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358A targeted transcriptomics approach for the determination of mixture effects of pesticidesPUB | DOI | WoS | PubMed | Europe PMC
Lichtenstein D, Mentz A, Sprenger H, Schmidt FF, Albaum S, Kalinowski J, Planatscher H, Joos TO, Poetz O, Braeuning A (2021)
Toxicology 460: 152892. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957237A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosisPUB | DOI | WoS | PubMed | Europe PMC
Secic E, Zanini S, Wibberg D, Jelonek L, Busche T, Kalinowski J, Nasfi S, Thielmann J, Imani J, Steinbrenner J, Kogel K-H (2021)
BMC Biology 19(1): 171 . -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957069Pesticide mixture effects on liver protein abundance in HepaRG cellsPUB | DOI | WoS | PubMed | Europe PMC
Schmidt FF, Lichtenstein D, Planatscher H, Mentz A, Kalinowski J, Steinhilber AE, Joos TO, Braeuning A, Poetz O (2021)
Toxicology 458: 152839. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957077An eight-compound mixture but not corresponding concentrations of individual chemicals induces triglyceride accumulation in human liver cellsPUB | DOI | WoS | PubMed | Europe PMC
Lichtenstein D, Lasch A, Alarcan J, Mentz A, Kalinowski J, Schmidt FF, Poetz O, Marx-Stoelting P, Braeuning A (2021)
Toxicology 459: 152857. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956918
Functional Redundancy and Specialization of the Conserved Cold Shock Proteins in Bacillus subtilisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Faßhauer P, Busche T, Kalinowski J, Mäder U, Poehlein A, Daniel R, Stülke J (2021)
Microorganisms 9(7): 1434. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951544Eliciting the silent lucensomycin biosynthetic pathway in Streptomyces cyanogenus S136 via manipulation of the global regulatory gene adpAPUB | DOI | WoS | PubMed | Europe PMC
Yushchuk O, Ostash I, Mosker E, Vlasiuk I, Deneka M, Rückert C, Busche T, Fedorenko V, Kalinowski J, Sussmuth RD, Ostash B (2021)
Scientific reports 11(1): 3507. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512Going to extremes - a metagenomic journey into the dark matter of lifePUB | DOI | WoS | PubMed | Europe PMC
Aevarsson A, Kaczorowska A-K, Adalsteinsson BT, Ahlqvist J, Al-Karadaghi S, Altenbuchner J, Arsin H, Atlasson UA, Brandt D, Cichowicz-Cieslak M, Cornish KAS, et al. (2021)
FEMS microbiology letters: fnab067. -
2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibataePUB | DOI | WoS | PubMed | Europe PMC
Medvedeva S, Brandt D, Cvirkaite-Krupovic V, Liu Y, Severinov K, Ishino S, Ishino Y, Prangishvili D, Kalinowski J, Krupovic M (Accepted)
Environmental microbiology. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919Recombinant expression and characterization of novel P450s from Actinosynnema mirumPUB | DOI | WoS | PubMed | Europe PMC
Schmitz LM, Hageneier F, Rosenthal K, Busche T, Brandt D, Kalinowski J, Lutz S (2021)
Bioorganic & medicinal chemistry 42: 116241. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955521Superior production of heavy pamamycin derivatives using a bkdR deletion mutant of Streptomyces albus J1074/R2.PUB | DOI | WoS | PubMed | Europe PMC
Glaser L, Kuhl M, Stegmuller J, Rückert C, Myronovskyi M, Kalinowski J, Luzhetskyy A, Wittmann C (2021)
Microbial cell factories 20(1): 111 . -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6). -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2954380Genomic-Led Discovery of a Novel Glycopeptide Antibiotic by Nonomuraea coxensis DSM 45129PUB | DOI | WoS | PubMed | Europe PMC
Yushchuk O, Vior NM, Andreo-Vidal A, Berini F, Rückert C, Busche T, Binda E, Kalinowski J, Truman AW, Marinelli F (2021)
ACS chemical biology. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952997Response of the thermoacidophilic Archaeon Sulfolobus acidocaldarius to solvent stress exemplified by 1-butanol exposurePUB | DOI | WoS | PubMed | Europe PMC
Benninghoff JC, Kuschmierz L, Zhou X, Albersmeier A, Pham TK, Busche T, Wright PC, Kalinowski J, Makarova KS, Brasen C, Flemming H-C, et al. (2021)
Applied and environmental microbiology. -
2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954831Microparticles enhance the formation of seven major classes of natural products in native and metabolically engineered actinobacteria through accelerated morphological developmentPUB | DOI | WoS | PubMed | Europe PMC
Kuhl M, Rückert C, Glaser L, Beganovic S, Luzhetskyy A, Kalinowski J, Wittmann C (Accepted)
Biotechnology and bioengineering. -
2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954389Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface propertiesPUB | DOI | WoS | PubMed | Europe PMC
Oberbeckmann S, Bartosik D, Huang S, Werner J, Hirschfeld C, Wibberg D, Heiden SE, Bunk B, Overmann J, Becher D, Kalinowski J, et al. (Accepted)
Environmental microbiology. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha.PUB | DOI | WoS | PubMed | Europe PMC
Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism.PUB | DOI | WoS | PubMed | Europe PMC
Blanc-Mathieu R, Dahle H, Hofgaard A, Brandt D, Ban H, Kalinowski J, Ogata H, Sandaa R-A (2021)
Journal of virology. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951630
The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra FinchPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maraci Ö, Antonatou-Papaioannou A, Jünemann S, Castillo O, Busche T, Kalinowski J, Caspers B (2021)
Frontiers in Microbiology 12: 619141. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952703Identification and elimination of genomic regions irrelevant for magnetosome biosynthesis by large-scale deletion in Magnetospirillum gryphiswaldensePUB | DOI | WoS | PubMed | Europe PMC
Zwiener T, Mickoleit F, Dziuba M, Rückert C, Busche T, Kalinowski J, Faivre D, Uebe R, Schüler D (2021)
BMC Microbiology 21(1): 65. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952132Towards a 'chassis' for bacterial magnetosome biosynthesis: genome streamlining of Magnetospirillum gryphiswaldense by multiple deletionsPUB | DOI | WoS | PubMed | Europe PMC
Zwiener T, Dziuba M, Mickoleit F, Rückert C, Busche T, Kalinowski J, Uebe R, Schueler D (2021)
Microbial Cell Factories 20(1): 35. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951159
Utilization of Phenol as Carbon Source by the Thermoacidophilic Archaeon Saccharolobus solfataricus P2 Is Limited by Oxygen Supply and the Cellular Stress ResponsePUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Wolf J, Koblitz J, Albersmeier A, Kalinowski J, Siebers B, Schomburg D, Neumann-Schaal M (2021)
Frontiers in Microbiology 11: 587032. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stressPUB | DOI | WoS | PubMed | Europe PMC
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941608
Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota)PUB | PDF | DOI | WoS
Stadler M, Lambert C, Wibberg D, Kalinowski J, Cox RJ, Kolarik M, Kuhnert E (2020)
MYCOLOGICAL PROGRESS 19(3): 235-245. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943800
High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxaPUB | PDF | DOI | WoS
Wibberg D, Stadler M, Lambert C, Bunk B, Sproer C, Rückert C, Kalinowski J, Cox RJ, Kuhnert E (2020)
FUNGAL DIVERSITY. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978170Characteristics of Genome of Bacillus velezensis ONU 553 Strain Isolated from the Bottom Sediments of the Black SeaPUB | DOI | Download (ext.)
Shtenikov MD, Ostapchuk AM, Vasylieva NY, Luzhetskyy AM, Rückert C, Kalinowski J, Ivanytsia VO (2020)
Mikrobiolohichnyi Zhurnal = Microbiological Journal 82(3): 14-21. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946320
A maltose-regulated large genomic region is activated by the transcriptional regulator MalT in Actinoplanes sp. SE50/110PUB | PDF | DOI | WoS | PubMed | Europe PMC
Droste J, Kulisch M, Wolf T, Schaffert L, Schneiker-Bekel S, Pühler A, Kalinowski J (2020)
Applied microbiology and biotechnology 104: 9283–9294. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949440
Application of Next Generation Sequencing (NGS) in Phage Displayed Peptide Selection to Support the Identification of Arsenic-Binding MotifsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Braun R, Schönberger N, Vinke S, Lederer F, Kalinowski J, Pollmann K (2020)
Viruses 12(12): 1360. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260
Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocolPUB | PDF | DOI | WoS | PubMed | Europe PMC
Radukic M, Brandt D, Haak M, Müller K, Kalinowski J (2020)
NAR Genomics and Bioinformatics 2(4): lqaa074. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell CompartmentPUB | DOI | WoS | PubMed | Europe PMC
Schulte-Schrepping J, Reusch N, Paclik D, Baßler K, Schlickeiser S, Zhang B, Krämer B, Krammer T, Brumhard S, Bonaguro L, De Domenico E, et al. (2020)
Cell 182(6): 1419-1440.e23. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949051
Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finchesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Engel K, Pankoke H, Jünemann S, Brandl HB, Sauer J, Griffith S, Kalinowski J, Caspers B (2020)
BMC Ecology 20(1): 58. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950214The sporothriolides. A new biosynthetic family of fungal secondary metabolitesPUB | DOI | WoS | PubMed | Europe PMC
Tian D-S, Kuhnert E, Ouazzani J, Wibberg D, Kalinowski J, Cox RJ (2020)
Chemical Science 11(46): 12477-12484. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948760Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation.PUB | DOI | WoS | PubMed | Europe PMC
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene. -
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2948421Generation and analysis of mutant strains of Escherichia coli and methicillin-resistant Staphylococcus aureus obtained by laboratory selection to survive on metallic copper surfaces.PUB | DOI | WoS | PubMed | Europe PMC
Bleichert P, Butof L, Rückert C, Herzberg M, Francisco R, Morais PV, Grass G, Kalinowski J, Nies DH (Accepted)
Applied and environmental microbiology. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949422Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to DoxorubicinPUB | DOI | WoS | PubMed | Europe PMC
Guerrero-Garzon JF, Madland E, Zehl M, Singh M, Rezaei S, Aachmann FL, Courtade G, Urban E, Rückert C, Busche T, Kalinowski J, et al. (2020)
iScience 23(12): 101785. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cellsPUB | DOI | WoS | PubMed | Europe PMC
Lichtenstein D, Mentz A, Schmidt FF, Luckert C, Buhrke T, Marx-Stoelting P, Kalinowski J, Albaum S, Joos TO, Poetz O, Braeuning A (2020)
Food and Chemical Toxicology 145: 111690. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948756The alarmone (p)ppGpp confers tolerance to oxidative stress during the stationary phase by maintenance of redox and iron homeostasis in Staphylococcus aureusPUB | DOI | WoS | PubMed | Europe PMC
Fritsch VN, Loi VV, Busche T, Tung QN, Lill R, Horvatek P, Wolz C, Kalinowski J, Antelmann H (2020)
Free radical biology & medicine. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948762
Revisiting the Growth Modulon of Corynebacterium glutamicum Under Glucose Limited Chemostat Conditions.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Graf M, Haas T, Teleki A, Feith A, Cerff M, Wiechert W, Nöh K, Busche T, Kalinowski J, Takors R (2020)
Frontiers in Bioengineering and Biotechnology 8: 584614. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945521
Microparticles globally reprogram Streptomyces albus toward accelerated morphogenesis, streamlined carbon core metabolism and enhanced production of the antituberculosis polyketide pamamycinPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kuhl M, Gläser L, Rebets Y, Rückert C, Sarkar N, Hartsch T, Kalinowski J, Luzhetskyy A, Wittmann C (2020)
Biotechnology and Bioengineering. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945474
Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hemmerich J, Labib M, Steffens C, Reich SJ, Weiske M, Baumgart M, Rückert C, Ruwe M, Siebert D, Wendisch VF, Kalinowski J, et al. (2020)
Microbial Biotechnology 13(6): 2020-2031. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949080
The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Droste J, Ortseifen V, Schaffert L, Persicke M, Schneiker-Bekel S, Pühler A, Kalinowski J (2020)
BMC genomics 21: 818. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946157
pSETT4, an Improved φC31-Based Integrative Vector System for Actinoplanes sp. SE50/110PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schaffert L, Jacob L, Schneiker-Bekel S, Persicke M, März C, Rückert C, Pühler A, Kalinowski J (2020)
Microbiology Resource Announcements 9(39): e00596-20. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948423Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-plantaPUB | DOI | WoS | PubMed | Europe PMC
Herrera-Belaroussi A, Normand P, Pawlowski K, Fernandez MP, Wibberg D, Kalinowski J, Brachmann A, Berckx F, Lee N, Blom J, Pozzi AC, et al. (2020)
Systematic and applied microbiology 43(6): 126134. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942701A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli.PUB | DOI | WoS | PubMed | Europe PMC
Rust M, Helfrich EJN, Freeman MF, Nanudorn P, Field CM, Rückert C, Kundig T, Page MJ, Webb VL, Kalinowski J, Sunagawa S, et al. (2020)
Proceedings of the National Academy of Sciences of the United States of America 117(17): 9508-9518. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945458The colonic mucosa-associated microbiome in SIV infection: shift towards Bacteroidetes coincides with mucosal CD4(+) T cell depletion and enterocyte damagePUB | DOI | WoS | PubMed | Europe PMC
Allers K, Stahl-Hennig C, Fiedler T, Wibberg D, Hofmann J, Kunkel D, Moos V, Kreikemeyer B, Kalinowski J, Schneider T (2020)
SCIENTIFIC REPORTS 10(1). -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945532Viennamycins: Lipopeptides Produced by a Streptomyces sp.PUB | DOI | WoS | PubMed | Europe PMC
Bekiesch P, Zehl M, Domingo-Contreras E, Martin J, Perez-Victoria I, Reyes F, Kaplan A, Rückert C, Busche T, Kalinowski J, Zotchev SB (2020)
Journal of natural products 83(8): 2381–2389. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945782High diversity of Vibrio spp. associated with different ecological niches in a marine aquaria system and description of Vibrio aquimaris sp. novPUB | DOI | WoS | PubMed | Europe PMC
Franco A, Rückert C, Blom J, Busche T, Reichert J, Schubert P, Goesmann A, Kalinowski J, Wilke T, Kampfer P, Glaeser SP (2020)
Systematic and applied microbiology 43(5): 126123. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299
Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm FormationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kreienbaum M, Dörrich AK, Brandt D, Schmid NE, Leonhard T, Hager F, Brenzinger S, Hahn J, Glatter T, Ruwe M, Briegel A, et al. (2020)
Frontiers in Microbiology 11: 573260. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945214The plant-derived naphthoquinone lapachol causes an oxidative stress response in Staphylococcus aureus.PUB | DOI | WoS | PubMed | Europe PMC
Linzner N, Fritsch VN, Busche T, Tung QN, Loi VV, Bernhardt J, Kalinowski J, Antelmann H (2020)
Free radical biology & medicine 158: 126-136. -
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2945465DETERMINATION OF ADDITIVE, SYNERGISTIC AND ANTAGONISTIC EFFECTS BY THE ANALYSES OF PROTEIN MARKERS IN PESTICIDE MIXTURE-TREATED HEPARG-CELLSPUB | WoS
Schmidt F, Planatscher H, Lichtenstein D, Mentz A, Kalinowski J, Joos T, Braeuning A, Poetz O (2020)
In: DRUG METABOLISM AND PHARMACOKINETICS., 35(1). Tokyo: Japanese Soc Study Xenobiotics: S50. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944774Genetic Engineering of Oligotropha carboxidovorans Strain OM5-A Promising Candidate for the Aerobic Utilization of Synthesis GasPUB | DOI | WoS | PubMed | Europe PMC
Siebert D, Busche T, Metz AY, Smaili M, Queck BAW, Kalinowski J, Eikmanns BJ (2020)
ACS SYNTHETIC BIOLOGY 9(6): 1426-1440. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942996
Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
Schaffert L, Schneiker-Bekel S, Gierhake J, Droste J, Persicke M, Rosen W, Pühler A, Kalinowski J (2020)
Applied Microbiology and Biotechnology 104: 5395–5408. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943712The roseoflavin producer Streptomyces davaonensis has a high catalytic capacity and specific genetic adaptations with regard to the biosynthesis of riboflavin.PUB | DOI | WoS | PubMed | Europe PMC
Kissling L, Schneider C, Seibel K, Dorjjugder N, Busche T, Kalinowski J, Mack M (2020)
Environmental microbiology. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943414
Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived Streptomyces sp. IB201691-2APUB | PDF | DOI | WoS | PubMed | Europe PMC
Voitsekhovskaia I, Paulus C, Dahlem C, Rebets Y, Nadmid S, Zapp J, Axenov-Gribanov D, Rückert C, Timofeyev M, Kalinowski J, Kiemer AK, et al. (2020)
Microorganisms 8(5): 680. -
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer PlasmidsPUB | WoS
Radukic M, Brandt D, Haak M, Kalinowski J, Müller K (2020)
In: MOLECULAR THERAPY., 28(4). Cambridge: Cell Press: 398-399. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943125
The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Berckx F, Wibberg D, Kalinowski J, Pawlowski K (2020)
Genes 11(4). -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386Pseudomonas carnis sp. nov., isolated from meat.PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski J (2020)
International journal of systematic and evolutionary microbiology 70(3): 1528-1540. -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942457
Streptomyces spp. From the Marine Sponge Antho dichotoma: Analyses of Secondary Metabolite Biosynthesis Gene Clusters and Some of Their ProductsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Guerrero-Garzón JF, Zehl M, Schneider O, Rückert C, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2020)
Frontiers in Microbiology 11: 437. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLSPUB | DOI | WoS | PubMed | Europe PMC
Braeuning A, Mentz A, Schmidt FF, Albaum S, Planatscher H, Kalinowski J, Joos TO, Poetz O, Lichtenstein D (2020)
EXCLI JOURNAL 19: 135-153. -
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941899A Multi-Producer Microbiome Creates Chemical Diversity in the Marine Sponge Mycale hentscheliPUB | WoS
Rust M, Helfrich EJN, Freeman MF, Nanudorn P, Field C, Rückert C, Page MJ, Webb VL, Kalinowski J, Sunagawa S, Piel J (2020)
In: MARINE DRUGS., 18(1). Basel: Mdpi. -
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941898The Evolutionary Profile of a Superproducer Sponge Symbiont, Candidatus "Entheonella"PUB | WoS
Cahn JKB, Peters EE, Lotti A, Field C, Rückert C, Kalinowski J, Sunagawa S, Takeyama H, Piel J (2020)
In: MARINE DRUGS., 18(1). Basel: Mdpi. -
2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941893Mixture effects on toxicologically relevant liver proteins after pesticide treatment in hepaRG cellsPUB | WoS
Schmidt F, Steinhilber A, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Joos T, Poetz O (2020)
In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY., 393(SUPPL 1). New york: Springer: 15. -
2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitroPUB | WoS
Braeuning A, Lichtenstein D, Mentz A, Kalinowski J, Schmidt F, Poetz O, Lampen A (2019)
Naunyn-Schmiedeberg's Archives of Pharmacology 392(S1): S76-S77. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273
A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Gräwe A, Dreyer A, Vornholt T, Barteczko U, Buchholz L, Drews G, Ho UL, Jackowski ME, Kracht M, Lüders J, Bleckwehl T, et al. (2019)
PloS one 14(3): e0210940. -
2019 | Preprint | Unveröffentlicht | PUB-ID: 2949925A universal method for gene expression engineeringPUB | DOI
Lale R, Tietze L, Nesje J, Onsager I, Engelhardt K, Wong CFA, Akan M, Hummel N, Kalinowski J, Rückert C, Hohmann-Marriott MF (Unpublished)
bioRxiv. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinasePUB | DOI | WoS | PubMed | Europe PMC
Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L (2019)
CHEMICAL SCIENCE 10(16): 4486-4490. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.PUB | DOI | WoS | PubMed | Europe PMC
Seeger B, Mentz A, Knebel C, Schmidt F, Bednarz H, Niehaus K, Albaum S, Kalinowski J, Noll T, Steinberg P, Marx-Stoelting P, et al. (2019)
Archives of toxicology 93(8): 2321-2333. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518Early Response of Sulfolobus acidocaldarius to Nutrient LimitationPUB | DOI | WoS | PubMed | Europe PMC
Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum S, Jakobi T, Schouten S, Neumann-Schaal M, et al. (2019)
FRONTIERS IN MICROBIOLOGY 9: 3201. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935870Identifying the Growth Modulon of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Haas T, Graf M, Niess A, Busche T, Kalinowski J, Blombach B, Takors R (2019)
FRONTIERS IN MICROBIOLOGY 10: 974. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724The MarR-type repressor MhqR confers quinone and antimicrobial resistance in Staphylococcus aureus.PUB | DOI | WoS | PubMed | Europe PMC
Fritsch VN, Loi VV, Busche T, Sommer A, Tedin K, Nurnberg DJ, Kalinowski J, Bernhardt J, Fulde M, Antelmann H (2019)
Antioxidants & redox signaling 31(16): 1235-1252. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.PUB | DOI | WoS | PubMed | Europe PMC
Brandt C, Viehweger A, Singh A, Pletz MW, Wibberg D, Kalinowski J, Lerch S, Muller B, Makarewicz O (2019)
Scientific reports 9(1): 11223. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams.PUB | DOI | WoS | PubMed | Europe PMC
Nguyen TV, Wibberg D, Vigil-Stenman T, Berckx F, Battenberg K, Demchenko KN, Blom J, Fernandez MP, Yamanaka T, Berry AM, Kalinowski J, et al. (2019)
Genome biology and evolution 11(8): 2273–2291. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New CaledoniaPUB | DOI | WoS | PubMed | Europe PMC
Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Huennefeld M, Persicke M, Kalinowski J, Frunzke J (2019)
FRONTIERS IN MICROBIOLOGY 10: 1039. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of ProtocatechuatePUB | DOI | WoS | PubMed | Europe PMC
Graf M, Haas T, Mueller F, Buchmann A, Harm-Bekbenbetova J, Freund A, Niess A, Persicke M, Kalinowski J, Blombach B, Takors R (2019)
Frontiers in Microbiology 10: 1648. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032PUB | DOI | WoS | PubMed | Europe PMC
Dostalova H, Busche T, Holatko J, Rucka L, Stepanek V, Barvik I, Nesvera J, Kalinowski J, Patek M (2019)
FRONTIERS IN MICROBIOLOGY 9(50): 3287. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran.PUB | DOI | WoS | PubMed | Europe PMC
Jahanshah G, Miess H, Busche T, Rückert C, Kalinowski J, Rokni-Zadeh H, Gross H (2019)
Microbiology resource announcements 8(2): e01375-18. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16.PUB | DOI | WoS | PubMed | Europe PMC
Arenas-Lopez C, Locker J, Orol D, Walter F, Busche T, Kalinowski J, Minton NP, Kovacs K, Winzer K (2019)
Biotechnology for biofuels 12(1): 150. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939523
Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Ruwe M, Persicke M, Busche T, Müller B, Kalinowski J (2019)
Frontiers in Microbiology 10: 2769. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561Pseudomonas bubulae sp. nov., isolated from beef.PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413
Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
Schaffert L, Schneiker-Bekel S, Dymek S, Droste J, Persicke M, Busche T, Brandt D, Pühler A, Kalinowski J (2019)
Frontiers in Microbiology 10: 2448. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites.PUB | DOI | WoS | PubMed | Europe PMC
Lopatniuk M, Myronovskyi M, Nottebrock A, Busche T, Kalinowski J, Ostash B, Fedorenko V, Luzhetskyy A (2019)
Applied microbiology and biotechnology 103(17): 7097–7110. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals.PUB | DOI | WoS | PubMed | Europe PMC
Grenz S, Baumann PT, Rückert C, Nebel BA, Siebert D, Schwentner A, Eikmanns BJ, Hauer B, Kalinowski J, Takors R, Blombach B (2019)
Metabolic engineering 55: 220-230. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
Schaffert L, März C, Burkhardt L, Droste J, Brandt D, Busche T, Rosen W, Schneiker-Bekel S, Persicke M, Pühler A, Kalinowski J (2019)
Microbial Cell Factories 18(1): 114. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794Fabry disease: Detection of Alu-mediated exon duplication by NGS.PUB | DOI | WoS | PubMed | Europe PMC
Farr M, Ferreira S, Al-Dilaimi A, Bogeholz S, Goesmann A, Kalinowski J, Knabbe C, Faber L, Oliveira JP, Rudolph V (2019)
Molecular and cellular probes 45: 79-83. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135
Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana GenomePUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B (2019)
Genes 10(9): 671. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing BiosynthesisPUB | DOI | WoS | PubMed | Europe PMC
Rebets Y, Nadmid S, Paulus C, Dahlem C, Herrmann J, Huebner H, Rückert C, Kiemer AK, Gmeiner P, Kalinowski J, Mueller R, et al. (2019)
Angewandte Chemie International Edition 58(37): 12930-12934. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603A defined cultivation medium for Sulfolobus acidocaldariusPUB | DOI | WoS | PubMed | Europe PMC
Quehenberger J, Albersmeier A, Glatzel H, Hackl M, Kalinowski J, Spadiut O (2019)
JOURNAL OF BIOTECHNOLOGY 301: 56-67. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935892Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress.PUB | DOI | WoS | PubMed | Europe PMC
Loi VV, Huyen NTT, Busche T, Tung QN, Gruhlke MCH, Kalinowski J, Bernhardt J, Slusarenko AJ, Antelmann H (2019)
Free radical biology & medicine 139: 55-69. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936033Secretome Dynamics in a Gram-Positive Bacterial ModelPUB | DOI | WoS | PubMed | Europe PMC
Tsolis KC, Hamed MB, Simoens K, Koepff J, Busche T, Rückert C, Oldiges M, Kalinowski J, Anne J, Kormanec J, Bernaerts K, et al. (2019)
MOLECULAR & CELLULAR PROTEOMICS 18(3): 423-436. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936035Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2PUB | DOI | WoS
Koshla OT, Rokytskyy IV, Ostash IS, Busche T, Kalinowski J, Moesker E, Suessmuth RD, Fedorenko VO, Ostash BO (2019)
CYTOLOGY AND GENETICS 53(1): 1-7. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter BiomarkePUB | DOI | WoS
Hain C, Cieslak C, Mentz A, Stranzenbach R, Kalinowski J, Stadler R (2019)
JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT 17(Suppl. 1): 1. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296
Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applicationsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
Journal of Biological Engineering 12(1): 13. -
2018 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2978171Aerobe Produktion von Isoprenoiden aus Synthesegas mit DSM1084PUB | DOI | Download (ext.)
Grenz S, Baumann P, Nebel B, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
In: Chemie Ingenieur Technik., 90(9). Wiley-VCH: 1254. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorinationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Neubauer P, Widmann C, Wibberg D, Schröder L, Frese M, Kottke T, Kalinowski J, Niemann H, Sewald N (2018)
PLoS ONE 13(5): e0196797. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971toaSTR: A web application for forensic STR genotyping by massively parallel sequencingPUB | DOI | WoS | PubMed | Europe PMC
Ganschow S, Silvery J, Kalinowski J, Tiemann C (2018)
Forensic Science International: Genetics 37: 21-28. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide AntibioticPUB | DOI | WoS | PubMed | Europe PMC
Schneider O, Simic N, Aachmann FL, Rückert C, Kristiansen KA, Kalinowski J, Jiang Y, Wang L, Jiang C-L, Lale R, Zotchev SB (2018)
FRONTIERS IN MICROBIOLOGY 9: 3139. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureusPUB | DOI | WoS | PubMed | Europe PMC
Van Loi V, Busche T, Preuss T, Kalinowski J, Bernhardt J, Antelmann H (2018)
FRONTIERS IN MICROBIOLOGY 9: 3037. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621HPUB | DOI | WoS | PubMed | Europe PMC
Kranz A, Busche T, Vogel A, Usadel B, Kalinowski J, Bott M, Polen T (2018)
BMC GENOMICS 19(1): 17. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MIIPUB | DOI | WoS | PubMed | Europe PMC
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)
Zeitschrift für Naturforschung C 73(1-2): 49-57. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water SourcesPUB | DOI | WoS | PubMed | Europe PMC
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial ActivityPUB | DOI | WoS | PubMed | Europe PMC
Jiao J, Paterson J, Busche T, Rückert C, Kalinowski J, Harwani D, Grosso H (2018)
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(9): UNSP e00108-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid CatabolismPUB | DOI | WoS | PubMed | Europe PMC
Yuecel O, Wibberg D, Philipp B, Kalinowski J (2018)
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(1): UNSP e01372-17. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV responsePUB | DOI | WoS | PubMed | Europe PMC
Schult F, Lee TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers S-V, Siebers B (2018)
NUCLEIC ACIDS RESEARCH 46(14): 7179-7192. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10PUB | DOI | WoS | PubMed | Europe PMC
Schneider O, Ilic-Tomic T, Rückert C, Kalinowski J, Gencic MS, Zivkovic MZ, Stankovic N, Radulovic NS, Vasiljevic B, Nikodinovic-Runic J, Zotchev SB (2018)
FRONTIERS IN MICROBIOLOGY 9: 10. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase EnzymePUB | DOI | WoS | PubMed | Europe PMC
Paulus C, Rebets Y, Zapp J, Rückert C, Kalinowski J, Luzhetskyy A (2018)
FRONTIERS IN MICROBIOLOGY 9: 1959. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777Binning Enables Efficient Host Genome Reconstruction in Cnidarian HolobiontsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass SpectrometryPUB | DOI | WoS | PubMed | Europe PMC
Kibret M, Guerrero-Garzon JF, Urban E, Zehl M, Wronski V-K, Rückert C, Busche T, Kalinowski J, Rollinger JM, Abate D, Zotchev SB (2018)
FRONTIERS IN MICROBIOLOGY 9: 13. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein SecretionPUB | DOI | WoS | PubMed | Europe PMC
Busche T, Tsolis KC, Koepff J, Rebets Y, Rückert C, Hamed MB, Bleidt A, Wiechert W, Lopatniuk M, Yousra A, Anne J, et al. (2018)
FRONTIERS IN MICROBIOLOGY 9: 12. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis speciesPUB | DOI | WoS | PubMed | Europe PMC
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930282Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to AnaerobiosisPUB | DOI | WoS | PubMed | Europe PMC
Lange J, Muench E, Mueller J, Busche T, Kalinowski J, Takors R, Blombach B (2018)
GENES 9(6): 297. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureusPUB | DOI | WoS | PubMed | Europe PMC
Vu VL, Busche T, Tedin K, Bernhardt J, Wollenhaupt J, Huyen NTT, Weise C, Kalinowski J, Wahl MC, Fulde M, Antelmann H (2018)
ANTIOXIDANTS & REDOX SIGNALING 29(7): 22. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistryPUB | DOI | WoS | PubMed | Europe PMC
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053Comprehensive subcellular topologies of polypeptides in StreptomycesPUB | DOI | WoS | PubMed | Europe PMC
Tsolis KC, Tsare E-P, Orfanoudaki G, Busche T, Kanaki K, Ramakrishnan R, Rousseau F, Schymkowitz J, Rückert C, Kalinowski J, Anne J, et al. (2018)
MICROBIAL CELL FACTORIES 17(1): 12. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon SequencingPUB | DOI | WoS | PubMed | Europe PMC
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133
Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Ruwe M, Rückert C, Kalinowski J, Persicke M (2018)
Frontiers in Microbiology 9: 916. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693
RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for InbreedingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit A-C, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman J (2018)
G3: Genes|Genomes|Genetics 8(8): 2709-2722. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943
Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Blifernez-Klassen O, Chaudhari S, Klassen V, Wördenweber R, Steffens T, Cholewa D, Niehaus K, Kalinowski J, Kruse O (2018)
PLOS ONE 13(6): e0198976. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic AuricinPUB | PDF | DOI | WoS | PubMed | Europe PMC
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296
Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulationPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Wittchen M, Busche T, Gaspar AH, Lee JH, Ton-That H, Kalinowski J, Tauch A (2018)
BMC Genomics 19(1): 82. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026
High Quality de Novo Transcriptome Assembly of Croton tigliumPUB | PDF | DOI | Download (ext.)
Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
Frontiers in Molecular Biosciences 5: 62. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment culturesPUB | DOI | WoS | PubMed | Europe PMC
Liu Y, Brandt D, Ishino S, Ishino Y, Koonin EV, Kalinowski J, Krupovic M, Prangishvili D (2018)
Environmental Microbiology 21(6): 2002-2014. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg PathwayPUB | DOI | WoS | PubMed | Europe PMC
Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Brasen C, Kalinowski J, Siebers B, Albers S-V (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(3): 19. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassaysPUB | DOI | WoS
Schmidt FF, Steinhilber AE, Hammer HS, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Marx-Stoelting P, Lampen A, Joos T, Poetz O (2018)
TOXICOLOGY LETTERS 295(Suppl. 1): S87. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditionsPUB | DOI | WoS | PubMed | Europe PMC
Yushchuk O, Ostash I, Vlasiuk I, Gren T, Luzhetskyy A, Kalinowski J, Fedorenko V, Ostash B (2018)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(19): 8419-8428. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensisPUB | DOI | WoS | PubMed | Europe PMC
Ludwig P, Sevin DC, Busche T, Kalinowski J, Bourdeaux F, Grininger M, Mack M (2018)
MICROBIOLOGY-SGM 164(6): 908-919. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identificationPUB | DOI | WoS | PubMed | Europe PMC
Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)
JOURNAL OF BIOTECHNOLOGY 272: 40-47. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Schwentner A, Feith A, Muench E, Busche T, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
METABOLIC ENGINEERING 47: 31-41. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235Characterization of the Actinonin Biosynthetic Gene ClusterPUB | DOI | WoS | PubMed | Europe PMC
Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)
CHEMBIOCHEM 19(11): 1189-1195. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbiontsPUB | DOI | WoS | PubMed | Europe PMC
Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, et al. (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.PUB | DOI | WoS | PubMed | Europe PMC
Landwehr W, Kaempfer P, Glaeser SP, Rückert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, et al. (2018)
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1): 382-393. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnologyPUB | DOI | WoS | PubMed | Europe PMC
Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, et al. (2018)
ACS Synthetic Biology 7(1): 132–144. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA)PUB | DOI | WoS | PubMed | Europe PMC
Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)
METALLOMICS 10(5): 722-734. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2PUB | DOI | WoS | PubMed | Europe PMC
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672Differential transcriptomic analysis reveals hidden light response in Streptomyces lividansPUB | DOI | WoS | PubMed | Europe PMC
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110PUB | PDF | DOI | WoS | PubMed | Europe PMC
Wolf T, Droste J, Gren T, Ortseifen V, Schneiker-Bekel S, Zemke T, Pühler A, Kalinowski J (2017)
BMC Genomics 18(1): 562. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912234New bioactive compounds from the marine-derived actinomycete Nocardiopsis lucentensis sp. ASMR2PUB | DOI | WoS
Eliwa EM, Abdel-Razek AS, Frese M, Wibberg D, Halawa AH, El-Agrody AM, Bedair AH, Kalinowski J, Sewald N, Shaaban M (2017)
Zeitschrift für Naturforschung B 72(5): 351-360. -
2017 | Datenpublikation | PUB-ID: 2930821
Expanding The Genetic CodePUB | Dateien verfügbar | DOI
Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, et al. (2017)
Bielefeld University. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18PUB | DOI | WoS | PubMed | Europe PMC
Paulus C, Rebets Y, Tokovenko B, Nadmid S, Terekhova LP, Myronovskyi M, Zotchev SB, Rückert C, Braig S, Zahler S, Kalinowski J, et al. (2017)
SCIENTIFIC REPORTS 7(1): 42382. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908076Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15BPUB | DOI | WoS | PubMed | Europe PMC
Makarewicz O, Lucas M, Brandt C, Herrmann L, Albersmeier A, Rückert C, Blom J, Goesmann A, van der Linden M, Kalinowski J, Pletz MW (2017)
PLoS One 12(1): e0169370. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress.PUB | DOI | WoS | PubMed | Europe PMC
Hillion M, Bernhardt J, Busche T, Rossius M, Maaß S, Becher D, Rawat M, Wirtz M, Hell R, Rückert C, Kalinowski J, et al. (2017)
Sci Rep 7(1): 1195. -
2017 | Zeitschriftenaufsatz | PUB-ID: 2911274Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C.PUB | DOI | PubMed | Europe PMC
Crnovčić I, Rückert C, Semsary S, Lang M, Kalinowski J, Keller U (2017)
Adv Appl Bioinform Chem 10: 29-46. -
2017 | Zeitschriftenaufsatz | PUB-ID: 2912103Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease.PUB | DOI | WoS | PubMed | Europe PMC
Tokovenko B, Rückert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkränzer B, Myronovskyi M, Luzhetskyy A (2017)
Genome Announc 5(20): e00362-17. -
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913400Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.PUB | DOI | WoS | PubMed | Europe PMC
Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk H-P, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2017)
Antonie Van Leeuwenhoek. Journal of Microbiology 110(12): 1705-1717. -
2017 | Zeitschriftenaufsatz | PUB-ID: 2913404Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831PUB | DOI | WoS | PubMed | Europe PMC
Grimm I, Dumke J, Vollmer T, Hinse D, Rückert C, Kalinowski J, Knabbe C, Dreier J (2017)
Genome Announcements 5(16): e00108-17. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912983Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with DiploidyPUB | DOI | WoS | PubMed | Europe PMC
Boehm K, Meyer F, Rhomberg A, Kalinowski J, Donovan C, Bramkamp M (2017)
MBIO 8(3): e00511-17. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916525Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Dostalova H, Holatko J, Busche T, Rucka L, Rapoport A, Halada P, Nesvera J, Kalinowski J, Patek M (2017)
AMB EXPRESS 7(1): 133. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916533Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary MetabolitesPUB | DOI | WoS | PubMed | Europe PMC
Sun Y-Q, Busche T, Rückert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB (2017)
ACS SYNTHETIC BIOLOGY 6(6): 1026-1033. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beetPUB | DOI | WoS | PubMed | Europe PMC
Hossain MS, Persicke M, ElSayed AI, Kalinowski J, Dietz K-J (2017)
Journal of Experimental Botany 68(21-22): 5961-5976. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916447The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent mannerPUB | DOI | WoS | PubMed | Europe PMC
Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C (2017)
PLOS ONE 12(10): e0186505. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913963
Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Ruwe M, Kalinowski J, Persicke M (2017)
Frontiers in Microbiology 8: 1601. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912419
Physiological roles of sigma factor SigD in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Taniguchi H, Busche T, Patschkowski T, Niehaus K, Patek M, Kalinowski J, Wendisch VF (2017)
BMC Microbiology 17(1): 158. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662
Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technologyPUB | PDF | DOI | WoS | PubMed | Europe PMC
Fernandes de Brito L, Irla M, Kalinowski J, Wendisch VF (2017)
BMC Genomics 18(1): 846. -
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913401Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonymsPUB | DOI | WoS | PubMed | Europe PMC
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
International Journal of Systematic and Evolutionary Microbiology 67(8): 3111-3116. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038
Highly efficient methane generation from untreated microalgae biomassPUB | PDF | DOI | WoS | PubMed | Europe PMC
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110
Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyondPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kulis-Horn R, Rückert C, Kalinowski J, Persicke M (2017)
BMC Microbiology 17(1): 161. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia)PUB | DOI | WoS | PubMed | Europe PMC
Celis JS, Edgell DR, Stelbrink B, Wibberg D, Hauffe T, Blom J, Kalinowski J, Wilke T (2017)
PLOS ONE 12(3): e0173734. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein ProductionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039TPUB | PDF | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysisPUB | DOI | WoS | PubMed | Europe PMC
Wolf T, Schneiker-Bekel S, Neshat A, Ortseifen V, Wibberg D, Zemke T, Pühler A, Kalinowski J (2017)
JOURNAL OF BIOTECHNOLOGY 251: 112-123. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthasesPUB | DOI | WoS | PubMed | Europe PMC
Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)
PHYTOCHEMISTRY 136: 15-22. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912973Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricusPUB | DOI | WoS | PubMed | Europe PMC
Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D (2017)
FEBS JOURNAL 284(13): 2078-2095. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911994Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and CystargolidePUB | DOI | WoS | PubMed | Europe PMC
Wolf F, Bauer JS, Bendel TM, Kulik A, Kalinowski J, Gross H, Kaysser L (2017)
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56(23): 6665-6668. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911273Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation.PUB | DOI | WoS | PubMed | Europe PMC
Koepff J, Keller M, Tsolis CK, Busche T, Rückert C, Hamed MB, Anné J, Kalinowski J, Wiechert W, Economou A, Oldiges M (2017)
Biotechnol Bioeng 114(9): 2011-2022. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4PUB | DOI | WoS
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2017)
Zeitschrift für Naturforschung B 72(1): 53-62. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916444Towards systems metabolic engineering in Pichia pastorisPUB | DOI | WoS | PubMed | Europe PMC
Schwarzhans JP, Luttermann T, Geier M, Kalinowski J, Friehs K (2017)
BIOTECHNOLOGY ADVANCES 35(6): 681-710. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537Isolation and whole genome analysis of endospore-forming bacteria from heroin.PUB | DOI | WoS | PubMed | Europe PMC
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose.PUB | DOI | WoS | PubMed | Europe PMC
Ortseifen V, Kalinowski J, Pühler A, Rückert C (2017)
J Biotechnol 262: 84-88. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.PUB | DOI | WoS | PubMed | Europe PMC
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918206Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953PUB | DOI | WoS | PubMed | Europe PMC
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
International Journal of Systematic and Evolutionary Microbiology 68(1): 42-46. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916527Mixture effects of azole fungicides on the adrenal gland in a broad dose rangePUB | DOI | WoS | PubMed | Europe PMC
Rieke S, Heise T, Schmidt F, Haider W, Bednarz H, Niehaus K, Mentz A, Kalinowski J, Hirsch-Ernst KI, Steinberg P, Niemann L, et al. (2017)
TOXICOLOGY 385: 28-37. -
2017 | Zeitschriftenaufsatz | PUB-ID: 2913406Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.PUB | DOI | WoS | PubMed | Europe PMC
Albersmeier A, Pfeifer-Sancar K, Rückert C, Kalinowski J (2017)
Journal of Biotechnology 257: 99-109. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907722A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucosePUB | DOI | WoS | PubMed | Europe PMC
Wolf J, Stark H, Fafenrot K, Albersmeier A, Pham TK, Mueller KB, Meyer BH, Hoffmann L, Shen L, Albaum SP, Kouril T, et al. (2016)
MOLECULAR MICROBIOLOGY 102(5): 882-908. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodHPUB | DOI | WoS | PubMed | Europe PMC
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)
BMC Genomics 17(1): 796. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from StreptomycetesPUB | DOI | WoS | PubMed | Europe PMC
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905959A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticusPUB | DOI | WoS | PubMed | Europe PMC
Horbal L, Ostash B, Luzhetskyy A, Walker S, Kalinowski J, Fedorenko V (2016)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 100(17): 7629-7638. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimizationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine spongePUB | PDF | DOI | WoS | PubMed | Europe PMC
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904989
High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genomePUB | PDF | DOI | WoS | PubMed | Europe PMC
Shah A, Schielzeth H, Albersmeier A, Kalinowski J, Hoffman J (2016)
Ecology and Evolution 16(6): 5718-5727. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulosePUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Al-Dilaimi A, Busche T, Wedderhoff I, Schrempf H, Kalinowski J, Lucana DO de O (2016)
JOURNAL OF BIOTECHNOLOGY 222: 13-14. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectorsPUB | DOI | WoS | PubMed | Europe PMC
Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)
Journal of Biotechnology 232: 79-88. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907748The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophilaPUB | DOI | WoS | PubMed | Europe PMC
Jagmann N, Bleicher V, Busche T, Kalinowski J, Philipp B (2016)
ENVIRONMENTAL MICROBIOLOGY 18(10): 3550-3564. -
2016 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907640Chassis organism from Corynebacterium glutamicum – Genome reduction as a tool toward improved strains for synthetic biology and industrial biotechnologyPUB | DOI | WoS
Baumgart M, Unthan S, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, et al. (2016)
In: New Biotechnology. New Biotechnology, 33. Elsevier BV. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704Complete mitochondrial genome of the scleractinian coral Porites rusPUB | DOI | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systemsPUB | DOI | WoS
Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, et al. (2016)
Soil Biology and Biochemistry 96: 191-197. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk.PUB | DOI | WoS | PubMed | Europe PMC
Zimmermann J, Rückert C, Kalinowski J, Lipski A (2016)
Int J Syst Evol Microbiol 66(12): 5288-5293. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 SystemPUB | DOI | WoS | PubMed | Europe PMC
Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)
Journal of Biotechnology 231: 122-128. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activityPUB | DOI | WoS | PubMed | Europe PMC
Walter F, Grenz S, Ortseifen V, Persicke M, Kalinowski J (2016)
Journal of Biotechnology 232: 99-109. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transportersPUB | DOI | WoS | PubMed | Europe PMC
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, et al. (2016)
Journal of Proteomics 131: 140-148. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905633An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous hostPUB | DOI | WoS | PubMed | Europe PMC
Manderscheid N, Bilyk B, Busche T, Kalinowski J, Paululat T, Bechthold A, Petzke L, Luzhetskyy A (2016)
JOURNAL OF BIOTECHNOLOGY 232: 110-117. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clustersPUB | DOI | WoS | PubMed | Europe PMC
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, et al. (2015)
Biotechnology Journal 10(2): 290-301. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758666The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in MicePUB | DOI | WoS | PubMed | Europe PMC
Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T, Giard J-C, Kalinowski J, Hain T, Hartke A (2015)
PLoS ONE 10(5): e0126143. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901251Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid CompoundsPUB | DOI | WoS | PubMed | Europe PMC
Leipoldt F, Zeyhle P, Kulik A, Kalinowski J, Heide L, Kaysser L (2015)
Plos One 10(12): e0143237. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasitePUB | PDF | DOI | WoS | PubMed | Europe PMC
Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)
BMC Genomics 16(1): 1038. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147TPUB | PDF | DOI | WoS | PubMed | Europe PMC
Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2015)
Standards in Genomic Sciences 10(1): 5. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel productionPUB | DOI | WoS | PubMed | Europe PMC
Kurosawa K, Plassmeier J, Kalinowski J, Rückert C, Sinskey AJ (2015)
Metabolic engineering 30: 89-95. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344
Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscapePUB | PDF | DOI | WoS | PubMed | Europe PMC
Irla M, Neshat A, Brautaset T, Rückert C, Kalinowski J, Wendisch VF (2015)
BMC Genomics 16(1): 73. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2723776Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like RepressorPUB | DOI | WoS | PubMed | Europe PMC
Heravi KM, Lange J, Watzlawick H, Kalinowski J, Altenbuchner J (2015)
Journal of Bacteriology 197(5): 959-972. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid ChemistryPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Leipoldt F, Zeyhle P, Fenical W, Jensen PR, Kalinowski J, Heide L, Kaysser L (2015)
Journal of Biotechnology 216: 140-141. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764291The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expressionPUB | DOI | WoS | PubMed | Europe PMC
Ostash B, Yushchuk O, Tistechok S, Mutenko H, Horbal L, Muryn A, Dacyuk Y, Kalinowski J, Luzhetskyy A, Fedorenko V (2015)
World Journal of Microbiology and Biotechnology 31(8): 1297-1301. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuationPUB | DOI | WoS | PubMed | Europe PMC
Müller C, Birmes FS, Rückert C, Kalinowski J, Fetzner S (2015)
Applied and Environmental Microbiology 81(22): 7720-7729. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal moleculesPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acidPUB | DOI | WoS | PubMed | Europe PMC
Oelschlägel M, Rückert C, Kalinowski J, Schmidt G, Schlömann M, Tischler D (2015)
International journal of systematic and evolutionary microbiology 65(Part 9): 3008-3015. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700185Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied bananaPUB | DOI | WoS | PubMed | Europe PMC
Al-Dilaimi A, Bednarz H, Lömker A, Niehaus K, Kalinowski J, Rückert C (2015)
International journal of systematic and evolutionary microbiology 65(Pt 1): 177-182. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmidPUB | DOI | WoS | PubMed | Europe PMC
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene clusterPUB | DOI | WoS | PubMed | Europe PMC
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, et al. (2015)
Journal of Proteomics 125: 1-16. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877Complete genome sequence of Streptomyces lividans TK24PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22. -
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2902782Multi-level omics analysis of combination effects of (tri-)azoles in a set of different cell linesPUB | DOI | WoS
Knebel C, Marx-Stoelting P, Pfeil R, Seeger B, Steinberg P, Mentz A, Bednarz H, Niehaus K, Kalinowski J, Noll T, Heise T (2015)
Toxicology Letters 238(2): S355. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901032Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Mahr R, Gaetgens C, Gaetgens J, Polen T, Kalinowski J, Frunzke J (2015)
Metabolic Engineering 32: 184-194. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potentialPUB | DOI | WoS | PubMed | Europe PMC
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibitionPUB | DOI | WoS | PubMed | Europe PMC
Kulis-Horn R, Persicke M, Kalinowski J (2015)
Journal of Biotechnology 206: 26-37. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacteriumPUB | DOI | WoS | PubMed | Europe PMC
Fernandes de Brito L, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia L, Wendisch VF (2015)
Journal of Biotechnology 207: 30-31. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676082Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis PotentialPUB | DOI | WoS | PubMed | Europe PMC
Ian E, Malko DB, Sekurova ON, Bredholt H, Rückert C, Borisova ME, Albersmeier A, Kalinowski J, Gelfand MS, Zotchev SB (2014)
PloS one 9(5): e96719. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196An environmental bacterial taxon with a large and distinct metabolic repertoirePUB | DOI | WoS | PubMed | Europe PMC
Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UAE, Heycke N, Schmitt S, Rinke C, et al. (2014)
Nature 506(7486): 58-62. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine ActinomycetePUB | DOI | WoS | PubMed | Europe PMC
Zeyhle P, Bauer JS, Kalinowski J, Shin-ya K, Gross H, Heide L (2014)
PLoS ONE 9(6): e99122. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of PseudonocardiaceaePUB | DOI | WoS | PubMed | Europe PMC
Rebets Y, Tokovenko B, Lushchyk I, Rückert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A (2014)
BMC genomics 15(1): 885. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic ClorobiocinPUB | DOI | PubMed | Europe PMC
Rückert C, Kalinowski J, Heide L, Apel AK (2014)
Genome announcements 2(1): e01147-13. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic NovobiocinPUB | DOI | PubMed | Europe PMC
Flinspach K, Rückert C, Kalinowski J, Heide L, Apel AK (2014)
Genome announcements 2(1): e01146-13. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944854Erratum: Corrigendum: An environmental bacterial taxon with a large and distinct metabolic repertoirePUB | DOI | WoS
Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UAE, Heycke N, Schmitt S, Rinke C, et al. (2014)
Nature 507(7491): 262-262. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop SequencersPUB | DOI | WoS | PubMed | Europe PMC
Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
PLOS ONE 9(9): e107014. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotrophPUB | DOI | WoS | PubMed | Europe PMC
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio AnalysisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
PLoS ONE 9(11): e113909. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811Vom Schärfesensor zur mikrobiellen BrennstoffzellePUB | DOI
Lübke N-C, Wolf T, Braun R, Rückert C, Kalinowski J (2014)
BIOspektrum 20(4): 468-469. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesisPUB | DOI | WoS | PubMed | Europe PMC
Neshat A, Mentz A, Rückert C, Kalinowski J (2014)
Journal of biotechnology 190: 55-63. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387ReadXplorer - Visualization and Analysis of Mapped SequencesPUB | DOI | WoS | PubMed | Europe PMC
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A (2014)
Bioinformatics 30(16): 2247-2254. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcriptsPUB | DOI | WoS | PubMed | Europe PMC
Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A (2014)
Journal of Biotechnology 190: 85-95. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Kulis-Horn R, Persicke M, Kalinowski J (2014)
Microbial Biotechnology 7(1): 5-25. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producerPUB | DOI | WoS | PubMed | Europe PMC
Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C (2014)
Journal of Biotechnology 189: 70-71. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheesePUB | DOI | WoS | PubMed | Europe PMC
Walter F, Albersmeier A, Kalinowski J, Rückert C (2014)
Journal of Biotechnology 189: 76-77. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656728Protein S-Mycothiolation Functions as Redox-Switch and Thiol Protection Mechanism in Corynebacterium glutamicum Under Hypochlorite StressPUB | DOI | WoS | PubMed | Europe PMC
Chi BK, Busche T, Van Laer K, Baesell K, Becher D, Clermont L, Seibold GM, Persicke M, Kalinowski J, Messens J, Antelmann H (2014)
Antioxidants & Redox Signaling 20(4): 589-605. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707667A Membrane-Bound Prenyltransferase Catalyzes the O-Prenylation of 1,6-Dihydroxyphenazine in the Marine Bacterium Streptomyces sp CNQ-509PUB | DOI | WoS | PubMed | Europe PMC
Zeyhle P, Bauer JS, Steimle M, Leipoldt F, Roesch M, Kalinowski J, Gross H, Heide L (2014)
ChemBioChem 15(16): 2385-2392. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806Identifizierung von Promotoren in Corynebacterium glutamicumPUB | DOI
Busche T, Pfeifer-Sancar K, Rückert C, Kalinowski J (2014)
BIOspektrum 20(3): 284-287. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycinPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)
Journal of biotechnology 178: 41-42. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689749Transcriptional response of Corynebacterium glutamicum ATCC 13032 to hydrogen peroxide stress and characterization of the OxyR regulonPUB | DOI | WoS | PubMed | Europe PMC
Milse J, Petri K, Rückert C, Kalinowski J (2014)
Journal of Biotechnology 190: 40-54. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662843Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activationPUB | DOI | WoS | PubMed | Europe PMC
Myronovskyi M, Tokovenko B, Brötz E, Rückert C, Kalinowski J, Luzhetskyy A (2014)
Applied microbiology and biotechnology 98(2): 795-806. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693535Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acidPUB | DOI | WoS | PubMed | Europe PMC
Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C (2014)
Journal of biotechnology 189: 46-47. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110PUB | DOI | WoS | PubMed | Europe PMC
Wendler S, Ortseifen V, Persicke M, Klein A, Neshat A, Niehaus K, Schneiker-Bekel S, Walter F, Wehmeier UF, Kalinowski J, Pühler A (2014)
Journal of Biotechnology 191: 113-120. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555771Corynebacterium glutamicum promoters: a practical approachPUB | DOI | WoS | PubMed | Europe PMC
Pátek M, Holátko J, Busche T, Kalinowski J, Nešvera J (2013)
Microbial Biotechnology 6(2): 103-117. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T)PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
Standards in Genomic Sciences 9(3): 505-513. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977
A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Petri K, Walter F, Persicke M, Rückert C, Kalinowski J (2013)
BMC Genomics 14(1): 713. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101
Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2013)
Standards in Genomic Sciences 8(3): 516-524. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032PUB | PDF | DOI | WoS | PubMed | Europe PMC
Mentz A, Neshat A, Pfeifer-Sancar K, Pühler A, Rückert C, Kalinowski J (2013)
BMC Genomics 14(1): 714. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq techniquePUB | PDF | DOI | WoS | PubMed | Europe PMC
Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J (2013)
BMC Genomics 14(1): 888. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228Corrigendum: Updating benchtop sequencing performance comparisonPUB | DOI | WoS | PubMed | Europe PMC
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Nature biotechnology 31(12): 1148. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soilPUB | DOI | WoS | PubMed | Europe PMC
Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
Journal of Biotechnology 168(4): 729-730. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolismPUB | DOI | WoS | PubMed | Europe PMC
Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A (2013)
Journal of Biotechnology 167(2): 178-189. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological StudyPUB | DOI | WoS | PubMed | Europe PMC
Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, et al. (2013)
PLoS medicine 10(2): e1001387. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625606Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Klaffl S, Brocker M, Kalinowski J, Eikmanns BJ, Bott M (2013)
Journal Of Bacteriology 195(18): 4283-4296. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmidsPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
Journal of Biotechnology 168(4): 739-740. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922Updating benchtop sequencing performance comparisonPUB | DOI | WoS | PubMed | Europe PMC
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Nature Biotechnology 31(4): 294-296. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614036Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnologyPUB | DOI | WoS | PubMed | Europe PMC
Baumgart M, Unthan S, Rückert C, Sivalingam J, Grünberger A, Kalinowski J, Bott M, Noack S, Frunzke J (2013)
Applied and environmental microbiology 79(19): 6006-6015. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth mediaPUB | DOI | WoS | PubMed | Europe PMC
Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A (2013)
Journal of Biotechnology 167(2): 166-177. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel productionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, et al. (2013)
BMC Genomics 14(1): 926. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathwaysPUB | DOI | WoS | PubMed | Europe PMC
Plassmeier J, Busche T, Molck S, Persicke M, Pühler A, Rückert C, Kalinowski J (2013)
Journal of Biotechnology 163(2): 225-232. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486027Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlRPUB | DOI | WoS | PubMed | Europe PMC
Laslo T, von Zaluskowski P, Gabris C, Lodd E, Rückert C, Dangel P, Kalinowski J, Auchter M, Seibold G, Eikmanns BJ (2012)
Journal of Bacteriology 194(5): 941-955. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2545867Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome MicroarraysPUB | DOI | WoS | PubMed | Europe PMC
Klenke C, Janowski SJ, Borck D, Widera D, Ebmeyer J, Kalinowski J, Leichtle A, Hofestädt R, Upile T, Kaltschmidt C, Kaltschmidt B, et al. (2012)
PLoS One 7(12): e52718. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A (2012)
BMC Genomics 13(1): 112. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528277
Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Busche T, Silar R, Picmanova M, Patek M, Kalinowski J (2012)
BMC Genomics 13(1): 445. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T)PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Al-Dilaimi A, Niehaus K, Szczepanowski R, Kalinowski J (2012)
Standards in Genomic Sciences 7(2): 284-293. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavinPUB | DOI | WoS | PubMed | Europe PMC
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
Journal of bacteriology 194(24): 6818-6827. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530872Draft Genome Sequence of Bacillus anthracis UR-1, Isolated from a German Heroin UserPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Licht K, Kalinowski J, Espírito Santo C, Antwerpen M, Hanczaruk M, Reischl U, Holzmann T, Gessner A, Tiemann C, Grass G (2012)
Journal of bacteriology 194(21): 5997-5998. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560259The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Heyer A, Gaetgens C, Hentschel E, Kalinowski J, Bott M, Frunzke J (2012)
Microbiology 158(Pt_12): 3020-3031. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548248Draft genome sequence of Bacillus anthracis BF-1, Isolated from Bavarian cattlePUB | DOI | WoS | PubMed | Europe PMC
Antwerpen M, Proença DN, Rückert C, Licht K, Kalinowski J, Hanczaruk M, Tiemann C, Grass G (2012)
Journal of bacteriology 194(22): 6360-6361. -
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2530508Chemical surprises from an uncultivated sponge symbiontPUB | WoS
Piel J, Freeman MF, Gurgui C, Helf M, Morinaka B, Wilson MC, Mori T, Rückert C, Steffens U, Takada K, Gernert C, et al. (2012)
Planta Medica 78(11): 1040-+. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501701rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis StrainsPUB | DOI | WoS | PubMed | Europe PMC
Beckert P, Hillemann D, Kohl T, Kalinowski J, Richter E, Niemann S, Feuerriegel S (2012)
Antimicrobial Agents and Chemotherapy 56(5): 2743-2745. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an examplePUB | DOI | WoS
Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)
Metabolomics 8(2): 310-322. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced PseudonocardiaceaePUB | PDF | DOI | WoS | PubMed | Europe PMC
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
BMC Genomics 13(1): 465. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2520163Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Chen X, Kohl TA, Rückert C, Rodionov DA, Li L-H, Ding J-Y, Kalinowski J, Liu S-J (2012)
Applied and environmental microbiology 78(16): 5796-5804. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditisPUB | DOI | WoS | PubMed | Europe PMC
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
BMC Genomics 12(1): 400. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944855Erratum to “Size exclusion chromatography—An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites” [J. Biotechnol. 154 (2–3) (2011) 171–178]PUB | DOI | WoS
Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
Journal of Biotechnology 155(2): 266-267. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolitesPUB | DOI | WoS | PubMed | Europe PMC
Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
Journal of Biotechnology 154(2-3): 171-178. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicumPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Plassmeier J, Persicke M, Pühler A, Sterthoff C, Rückert C, Kalinowski J (2011)
Journal of Biotechnology 159(1-2): 1-11. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2440558A Novel N,N-8-Amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) Catalyzing the Two Terminal Steps of Roseoflavin Biosynthesis in Streptomyces davawensisPUB | DOI | WoS | PubMed | Europe PMC
Jankowitsch F, Kuehm C, Kellner R, Kalinowski J, Pelzer S, Macheroux P, Mack M (2011)
Journal of Biological Chemistry 286(44): 38275-38285. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289491Regulatory and Metabolic Networks for Amino Acid Production by Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Kalinowski J (2011)
Journal of Biotechnology 154(2-3): 99-100. -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective EndocarditisPUB | WoS
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
Clinical Chemistry and Laboratory Medicine 49: S837. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programmingPUB | DOI | WoS | PubMed | Europe PMC
Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
Bioinformatics 27(10): 1351-1358. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093546Control of adhA and sucR expression by the SucR regulator in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Auchter M, Laslo T, Fleischer C, Schiller L, Arndt A, Gaigalat L, Kalinowski J, Eikmanns BJ (2011)
Journal of Biotechnology 152(3): 77-86. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1896635RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolismPUB | DOI | WoS | PubMed | Europe PMC
Auchter M, Cramer A, Hüser A, Rückert C, Emer D, Schwarz P, Arndt A, Lange C, Kalinowski J, Wendisch VF, Eikmanns BJ (2011)
J Biotechnol 154(2-3): 126-139. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400Advanced Genomics and Transcriptomics of Industrial MicroorganismsPUB | DOI
Kalinowski J, Rückert C, Szczepanowski R, Pühler A (2010)
Chemie Ingenieur Technik 82(9): 1518-1519. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796753Adaptation of Corynebacterium glutamicum to salt-stress conditionsPUB | DOI | WoS | PubMed | Europe PMC
Fraenzel B, Troetschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA (2010)
PROTEOMICS 10(3): 445-457. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795939Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citratePUB | DOI | WoS | PubMed | Europe PMC
Chao T-C, Kalinowski J, Nyalwidhe J, Hansmeier N (2010)
PROTEOMICS 10(8): 1673-1684. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968272Quantitative proteomic overview on the Corynebacterium glutamicum L-lysine producing strain DM1730PUB | DOI | WoS | PubMed | Europe PMC
Fraenzel B, Poetsch A, Troetschel C, Persicke M, Kalinowski J, Wolters DA (2010)
Journal of Proteomics 73(12): 2336-2353. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an examplePUB | PDF | DOI | PubMed | Europe PMC
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
BMC Systems Biology 3(1): 82. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032PUB | DOI | WoS | PubMed | Europe PMC
Nentwich SS, Brinkrolf K, Gaigalat L, Hueser AT, Rey DA, Mohrbach T, Marin K, Pühler A, Tauch A, Kalinowski J (2009)
MICROBIOLOGY 155(1): 150-164. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experimentsPUB | DOI | WoS | PubMed | Europe PMC
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588891
Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Follmann M, Ochrombel I, Kraemer R, Troetschel C, Poetsch A, Rückert C, Hueser A, Persicke M, Seiferling D, Kalinowski J, Marin K (2009)
BMC Genomics 10(1): 621. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNetPUB | DOI | WoS | PubMed | Europe PMC
Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J (2009)
NUCLEIC ACIDS RESEARCH 37(14): e97. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635517Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Barreiro C, Nakunst D, Hueser AT, de Paz HD, Kalinowski J, Martin JF (2009)
MICROBIOLOGY-SGM 155(2): 359-372. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicityPUB | DOI | WoS | PubMed | Europe PMC
Gartemann K-H, Abt B, Bekel T, Burger A, Engemann J, Fluegel M, Gaigalat L, Goesmann A, Graefen I, Kalinowski J, Kaup O, et al. (2008)
JOURNAL OF BACTERIOLOGY 190(6): 2138-2149. -
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2397428Sulfur Metabolism in Corynebacterium glutamicumPUB
Rückert C, Kalinowski J (2008)
In: Corynebacteria: Genomics and Molecular Biology. Burkovski A (Ed); Norfolk, UK: Caister Academic Press: 217-240. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequencesPUB | DOI | WoS | PubMed | Europe PMC
Brinkrolf K, Ploeger S, Solle S, Brune I, Nentwich SS, Hueser AT, Kalinowski J, Pühler A, Tauch A (2008)
MICROBIOLOGY 154(4): 1068-1081. -
2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496Looking for non-coding RNAs in Corynebacterium glutamicumPUB | WoS
Gkogkoglou K, Mentz A, Albersmeier A, Kalinowski J, Giegerich R (2008)
FEBS JOURNAL 275(Suppl. 1): 153. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor moleculesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rückert C, Milse J, Albersmeier A, Koch DJ, Pühler A, Kalinowski J (2008)
BMC GENOMICS 9(1): 483. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencingPUB | DOI | WoS | PubMed | Europe PMC
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, et al. (2008)
Journal of Biotechnology 136(1-2): 11-21. -
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)PUB
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327Complete genome sequence of the myxobacterium Sorangium cellulosumPUB | DOI | WoS | PubMed | Europe PMC
Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, et al. (2007)
Nature Biotechnology 25(11): 1281-1289. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome dataPUB | PDF | DOI | WoS | PubMed | Europe PMC
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, et al. (2007)
BMC Systems Biology 1(1): 55. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596355Nitrogen metabolism and nitrogen control in corynebacteria: Variations of a common themePUB | DOI | WoS | PubMed | Europe PMC
Walter B, Haenssler E, Kalinowski J, Burkovski A (2007)
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 12(1-2): 131-138. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Brune I, Jochmann N, Brinkrolf K, Hueser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A (2007)
JOURNAL OF BACTERIOLOGY 189(7): 2720-2733. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411PUB | DOI | WoS | PubMed | Europe PMC
Hansmeier N, Chao T-C, Daschkey S, Muesken M, Kalinowski J, Pühler A, Tauch A (2007)
PROTEOMICS 7(7): 1076-1096. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1632884FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Haenssler E, Mueller T, Jessberger N, Voelzke A, Plassmeier J, Kalinowski J, Kraemer R, Burkovski A (2007)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 76(3): 625-632. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596102
The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phasePUB | PDF | DOI | WoS | PubMed | Europe PMC
Larisch C, Nakunst D, Hueser AT, Tauch A, Kalinowski J (2007)
BMC Genomics 8(1): 4. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593292Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometryPUB | DOI | WoS | PubMed | Europe PMC
Plassmeier J, Barsch A, Persicke M, Niehaus K, Kalinowski J (2007)
Journal of Biotechnology 130(4): 354-363. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genesPUB | DOI | WoS | PubMed | Europe PMC
Nakunst D, Larisch C, Hueser AT, Tauch A, Pühler A, Kalinowski J (2007)
JOURNAL OF BACTERIOLOGY 189(13): 4696-4707. -
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Gaigalat L, Schlüter J-P, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J (2007)
BMC Molecular Biology 8(1): 104. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expressionPUB | DOI | WoS | PubMed | Europe PMC
Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A (2006)
J Biotechnol 127(1): 21-33. -
2006 | Zeitschriftenaufsatz | PUB-ID: 2405187The Gene ncgl2918 Encodes a Novel Maleylpyruvate Isomerase That Needs Mycothiol as Cofactor and Links Mycothiol Biosynthesis and Gentisate Assimilation in Corynebacterium glutamicumPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Feng J, Che Y, Milse J, Yin Y-J, Liu L, Rückert C, Shen X-H, Qi S-W, Kalinowski J, Liu S-J (2006)
Journal of Biological Chemistry 281(16): 10778-10785. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A (2006)
BMC Genomics 7(1): 21. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599645The gene ncgl2918 encodes a novel maleylpyruvate isomerase that needs mycothiol as cofactor and links mycothiol biosynthesis and gentisate assimilation in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Feng J, Che YS, Milse J, Yin YJ, Liu L, Ruckert C, Shen XH, Qi SW, Kalinowski J, Liu SJ (2006)
JOURNAL OF BIOLOGICAL CHEMISTRY 281(16): 10778-10785. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriaePUB | DOI | WoS | PubMed | Europe PMC
Hansmeier N, Chao TC, Kalinowski J, Pühler A, Tauch A (2006)
PROTEOMICS 6(8): 2465-2476. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032PUB | DOI | WoS | PubMed | Europe PMC
Hansmeier N, Chao TC, Pühler A, Tauch A, Kalinowski J (2006)
PROTEOMICS 6(1): 233-250. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598610Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: Growth and lysine productionPUB | DOI | WoS | PubMed | Europe PMC
Seibold G, Auchter M, Berens S, Kalinowski J, Eikmanns BJ (2006)
JOURNAL OF BIOTECHNOLOGY 124(2): 381-391. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032PUB | DOI | WoS | PubMed | Europe PMC
Hansmeier N, Albersmeier A, Tauch A, Damberg T, Ros R, Anselmetti D, Pühler A, Kalinowski J (2006)
Microbiology 152(4): 923-935. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597814
Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthasePUB | PDF | DOI | WoS | PubMed | Europe PMC
Brockmann-Gretza O, Kalinowski J (2006)
BMC Genomics 7(1): 230. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895365Emerging Corynebacterium glutamicum systems biologyPUB | DOI | WoS | PubMed | Europe PMC
Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W (2006)
Journal of Biotechnology 124(1): 74-92. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathwayPUB | PDF | DOI | WoS | PubMed | Europe PMC
Mormann S, Lömker A, Rückert C, Gaigalat L, Tauch A, Pühler A, Kalinowski J (2006)
BMC Genomics 7(1): 205. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteinsPUB | DOI | WoS | PubMed | Europe PMC
Mahne M, Tauch A, Pühler A, Kalinowski J (2006)
FEMS MICROBIOLOGY LETTERS 259(2): 226-233. -
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598225Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of FtslPUB | DOI | WoS | PubMed | Europe PMC
Valbuena N, Letek M, Ramos A, Ayala J, Nakunst D, Kalinowski J, Mateos LM, Gil JA (2006)
MICROBIOLOGY-SGM 152(8): 2491-2503. -
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2906740The Transparent CellPUB | Download (ext.)
Heinz D, Bott M, Kalinowski J, Niefind K, Rakors R, Wendisch VF (2005)
In: BIOTECHNOLOGY 2020 – From the Transparent Cell to the Custom-designed Process. European Commision: 8-15. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profilingPUB | DOI | WoS | PubMed | Europe PMC
Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisakova V, Patek M, Kalinowski J, Brune I, Pühler A, Tauch A (2005)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(6): 3255-3268. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032PUB | DOI | WoS | PubMed | Europe PMC
Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J (2005)
MOLECULAR MICROBIOLOGY 56(4): 871-887. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reductionPUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
Rückert C, Koch DJ, Rey DA, Albersmeier A, Mormann S, Pühler A, Kalinowski J (2005)
BMC Genomics 6(1): 121. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sourcesPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Koch DJ, Rückert C, Rey DA, Mix A, Pühler A, Kalinowski J (2005)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 6104-6114. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphatePUB | DOI | WoS | PubMed | Europe PMC
Koch DJ, Rückert C, Albersmeier A, Hüser AT, Tauch A, Pühler A, Kalinowski J (2005)
Mol Microbiol 58(2): 480-494. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Silberbach M, Hüser AT, Kalinowski J, Pühler A, Walter B, Kramer R, Burkovski A (2005)
JOURNAL OF BIOTECHNOLOGY 119(4): 357-367. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin floraPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, et al. (2005)
Journal of Bacteriology 187(13): 4671-4682. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequencesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Brune I, Brinkrolf K, Kalinowski J, Pühler A, Tauch A (2005)
BMC Genomics 6(1): 86. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602146Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulonPUB | DOI | WoS | PubMed | Europe PMC
Beckers G, Strosser J, Hildebrandt U, Kalinowski J, Farwick M, Kramer R, Burkovski A (2005)
MOLECULAR MICROBIOLOGY 58(2): 580-595. -
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniquesPUB | DOI | WoS | PubMed | Europe PMC
Silberbach M, Schafer M, Hüser AT, Kalinowski J, Pühler A, Kramer R, Burkovski A (2005)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(5): 2391-2402. -
2004 | Sammelwerksbeitrag | PUB-ID: 2906741Die gläserne ZellePUB
Heinz D, Bott M, Kalinowski J, Niefind K, Takors R, Wendisch VF (2004)
In: BIOTECHNOLOGIE 2020 - Von der gläsernen Zelle zum maßgeschneiderten Prozess. DECHEMA: 6-13. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatulaPUB | DOI | WoS | PubMed | Europe PMC
Küster H, Hohnjec N, Krajinski F, El Yahyaoui F, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, et al. (2004)
JOURNAL OF BIOTECHNOLOGY 108(2): 95-113. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'PUB | DOI | WoS | PubMed | Europe PMC
McHardy AC, Pühler A, Kalinowski J, Meyer F (2004)
PROTEOMICS 4(1): 46-58. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Hartmann M, Barsch A, Niehaus K, Pühler A, Tauch A, Kalinowski J (2004)
ARCHIVES OF MICROBIOLOGY 182(4): 299-312. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeiumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Bischoff N, Pühler A, Kalinowski J (2004)
PLASMID 52(2): 102-118. -
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopyPUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Pühler A, Kalinowski J (2004)
J Biotechnol 112(1-2): 177-193. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260EMMA: a platform for consistent storage and efficient analysis of microarray dataPUB | DOI | WoS | PubMed | Europe PMC
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequencePUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Bischoff N, Brune I, Kalinowski J (2003)
PLASMID 49(1): 63-74. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementationPUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Pühler A, Kalinowski J (2003)
JOURNAL OF BIOTECHNOLOGY 104(1-3): 213-228. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelopePUB | DOI | WoS | PubMed | Europe PMC
Brand S, Niehaus K, Pühler A, Kalinowski J (2003)
Archives of Microbiology 180(1): 33-44. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT)PUB | DOI | WoS | PubMed | Europe PMC
Watt SA, Patschkowski T, Kalinowski J, Niehaus K (2003)
Journal of Biotechnology 106(2-3): 287-300. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Hartmann M, Tauch A, Eggeling L, Bathe B, Mockel B, Pühler A, Kalinowski J (2003)
J Biotechnol 104(1-3): 199-211. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500An interferon-gamma-binding protein of novel structure encoded by the fowlpox virusPUB | DOI | WoS | PubMed | Europe PMC
Puehler F, Schwarz H, Waidner B, Kalinowski J, Kaspers B, Bereswill S, Staeheli P (2003)
JOURNAL OF BIOLOGICAL CHEMISTRY 278(9): 6905-6911. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
McHardy AC, Tauch A, Rückert C, Pühler A, Kalinowski J (2003)
J Biotechnol 104(1-3): 229-240. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
GenDB - an open source genome annotation system for prokaryote genomesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
Nucleic Acids Research 31(8): 2187-2195. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomicsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Pühler A, Kalinowski J, Thierbach G (2003)
JOURNAL OF BIOTECHNOLOGY 104(1-3): 27-40. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Rey DA, Pühler A, Kalinowski J (2003)
JOURNAL OF BIOTECHNOLOGY 103(1): 51-65. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon sourcePUB | DOI | WoS | PubMed | Europe PMC
Hüser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Pühler A, Wiegräbe I, Tauch A (2003)
JOURNAL OF BIOTECHNOLOGY 106(2-3): 269-286. -
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitaminsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, et al. (2003)
Journal of Biotechnology 104(1-3): 5-25. -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
Plasmid 48(2): 117-129. -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Kirchner O, Löffler B, Götker S, Pühler A, Kalinowski J (2002)
CURRENT MICROBIOLOGY 45(5): 362-367. -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cyclePUB | DOI | WoS | PubMed | Europe PMC | GenBank
Claes WA, Pühler A, Kalinowski J (2002)
J Bacteriol 184(10): 2728-2739. -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366PathFinder: reconstruction and dynamic visualization of metabolic pathwaysPUB | DOI | WoS | PubMed | Europe PMC
Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R (2002)
BIOINFORMATICS 18(1): 124-129. -
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strainsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
JOURNAL OF BIOTECHNOLOGY 99(1): 79-91. -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolismPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Wehmeier L, Gotker S, Pühler A, Kalinowski J (2001)
FEMS Microbiol Lett 201(1): 53-58. -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981Proteome analysis of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Pühler A, Bendt AK, et al. (2001)
ELECTROPHORESIS 22(9): 1712-1723. -
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvationPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Wehmeier L, Brockmann-Gretza O, Pisabarro A, Tauch A, Pühler A, Martin JF, Kalinowski J (2001)
Microbiology 147: 691-700. -
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogensPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Krieft S, Kalinowski J, Pühler A (2000)
MOLECULAR AND GENERAL GENETICS 263(1): 1-11. -
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systemsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Pühler A, Kalinowski J, Thierbach G (2000)
PLASMID 44(3): 285-291. -
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductasePUB | DOI | WoS | PubMed | Europe PMC
Elischewski F, Pühler A, Kalinowski J (1999)
JOURNAL OF BIOTECHNOLOGY 75(2-3): 135-146. -
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Krieft S, Pühler A, Kalinowski J (1999)
FEMS Microbiol Lett 173(1): 203-209. -
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coliPUB | WoS | PubMed | Europe PMC | GenBank
Dusch N, Pühler A, Kalinowski J (1999)
Appl Environ Microbiol 65(4): 1530-1539. -
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolismPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Quast K, Bathe B, Pühler A, Kalinowski J (1999)
Mol Gen Genet 262(3): 568-578. -
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coliPUB | DOI | WoS | PubMed | Europe PMC
Götting C, Thierbach G, Pühler A, Kalinowski J (1998)
BIOTECHNIQUES 24(3): 362-+. -
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene.PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Peters-Wendisch P, Kreutzer C, Kalinowski J, Pátek M, Sahm H, Eikmanns BJ (1998)
Microbiology-Sgm 144(4): 915-927. -
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Zheng ZX, Pühler A, Kalinowski J (1998)
Plasmid 40(2): 126-139. -
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolismPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Wehmeier L, Schafer A, Burkovski A, Kramer R, Mechold U, Malke H, Pühler A, Kalinowski J (1998)
Microbiology 144(7): 1853-1862. -
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene productPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, Hermann T, Burkovski A, Kramer R, Pühler A, Kalinowski J (1998)
ARCHIVES OF MICROBIOLOGY 169(4): 303-312. -
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strainPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Schäfer A, Tauch A, Droste N, Pühler A, Kalinowski J (1997)
Gene 203(2): 95-101. -
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coliPUB | WoS | PubMed | Europe PMC | GenBank
Jäger W, Kalinowski J, Pühler A (1997)
J Bacteriol 179(7): 2449-2451. -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genesPUB | DOI | WoS | PubMed | Europe PMC
Fernandez-Gonzalez C, Gil JA, Mateos LM, Schwarzer A, Schafer A, Kalinowski J, Pühler A, Martin JF (1996)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 46(5-6): 554-558. -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteinsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Jäger W, Peters-Wendisch P, Kalinowski J, Pühler A (1996)
Arch Microbiol 166(2): 76-82. -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosomePUB | WoS | PubMed | Europe PMC
Bathe B, Kalinowski J, Pühler A (1996)
MOLECULAR & GENERAL GENETICS 252(3): 255-265. -
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugationPUB | DOI | WoS | PubMed | Europe PMC
Mateos LM, Schäfer A, Kalinowski J, Martin JF, Pühler A (1996)
JOURNAL OF BACTERIOLOGY 178(19): 5768-5775. -
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection markerPUB | WoS | PubMed | Europe PMC
Jäger W, Schäfer A, Kalinowski J, Pühler A (1995)
FEMS MICROBIOLOGY LETTERS 126(1): 1-6. -
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC
Tauch A, Kassing F, Kalinowski J, Pühler A (1995)
PLASMID 33(3): 168-179. -
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCXPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Tauch A, KASSING F, Kalinowski J, Pühler A (1995)
Plasmid 34(2): 119-131. -
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposurePUB | WoS | PubMed | Europe PMC
Schäfer A, Kalinowski J, Pühler A (1994)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 60(2): 756-759. -
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coliPUB | DOI | WoS | PubMed | Europe PMC
Tauch A, Kirchner O, Wehmeier L, Kalinowski J, Pühler A (1994)
FEMS MICROBIOLOGY LETTERS 123(3): 343-347. -
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
SCHAEFER A, Tauch A, JAEGER W, Kalinowski J, THIERBACH G, Pühler A (1994)
Gene 145(1): 69-73. -
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coliPUB | WoS | PubMed | Europe PMC | GenBank
Schäfer A, Schwarzer A, Kalinowski J, Pühler A (1994)
J Bacteriol 176(23): 7309-7319. -
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702A functionally split pathway for lysine synthesis in Corynebacterium glutamiciumPUB | DOI | WoS | PubMed | Europe PMC
Schrumpf B, Schwarzer A, Kalinowski J, Pühler A, Eggeling L, Sahm H (1991)
Journal of Bacteriology 173(14): 4510-4516. -
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Kalinowski J, Cremer J, Bachmann B, Eggeling L, Sahm H, Pühler A (1991)
MOLECULAR MICROBIOLOGY 5(5): 1197-1204. -
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptakePUB | DOI | WoS | PubMed | Europe PMC
Seep-Feldhaus AH, Kalinowski J, Pühler A (1991)
MOLECULAR MICROBIOLOGY 5(12): 2995-3005. -
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicumPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Kalinowski J, Bachmann B, Thierbach G, Pühler A (1990)
MOLECULAR & GENERAL GENETICS 224(3): 317-324. -
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase.PUB | DOI | WoS | PubMed | Europe PMC
Thierbach G, Kalinowski J, Bachmann B, Pühler A (1990)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 32(4): 443-448. -
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria.PUB | DOI | WoS | PubMed | Europe PMC
Schäfer A, Kalinowski J, Simon R, Seep-Feldhaus AH, Pühler A (1990)
JOURNAL OF BACTERIOLOGY 172(3): 1663-1666. -
1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTSPUB | DOI | WoS | PubMed | Europe PMC | GenBank
PRIEFER UB, Kalinowski J, RUGER B, HEUMANN W, Pühler A (1989)
PLASMID 21(2): 120-128.