320 Publikationen

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[320]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135
Pucker, B., Rückert, C., Stracke, R., Viehöver, P., Kalinowski, J., and Weisshaar, B. (2019). Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome. Genes 10:671.
PUB | PDF | DOI | PubMed | Europe PMC | EBI - ENA Project
 
[319]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
Rebets, Y., Nadmid, S., Paulus, C., Dahlem, C., Herrmann, J., Huebner, H., Rückert, C., Kiemer, A. K., Gmeiner, P., Kalinowski, J., et al. (2019). Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis. Angewandte Chemie International Edition 58, 12930-12934.
PUB | DOI | WoS | PubMed | Europe PMC
 
[318]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
Grenz, S., Baumann, P. T., Rückert, C., Nebel, B. A., Siebert, D., Schwentner, A., Eikmanns, B. J., Hauer, B., Kalinowski, J., Takors, R., et al. (2019). Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals. Metabolic engineering 55, 220-230.
PUB | DOI | WoS | PubMed | Europe PMC
 
[317]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Sorieul, L., Rückert, C., Al-Dilaimi, A., Winkler, A., Kalinowski, J., Pham, D., Wabete, N., and Boulo, V. (2019). Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia. Microbiology resource announcements 8:e00477-19.
PUB | DOI | PubMed | Europe PMC
 
[316]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922
Graf, M., Haas, T., Mueller, F., Buchmann, A., Harm-Bekbenbetova, J., Freund, A., Niess, A., Persicke, M., Kalinowski, J., Blombach, B., et al. (2019). Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate. Frontiers in Microbiology 10:1648.
PUB | DOI | WoS | PubMed | Europe PMC
 
[315]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
Fritsch, V. N., Loi, V. V., Busche, T., Sommer, A., Tedin, K., Nurnberg, D. J., Kalinowski, J., Bernhardt, J., Fulde, M., and Antelmann, H. (2019). The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>. Antioxidants & redox signaling.
PUB | DOI | WoS | PubMed | Europe PMC
 
[314]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
Lopatniuk, M., Myronovskyi, M., Nottebrock, A., Busche, T., Kalinowski, J., Ostash, B., Fedorenko, V., and Luzhetskyy, A. (2019). Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites. Applied microbiology and biotechnology 103, 7097–7110.
PUB | DOI | WoS | PubMed | Europe PMC
 
[313]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907
Brandt, C., Viehweger, A., Singh, A., Pletz, M. W., Wibberg, D., Kalinowski, J., Lerch, S., Muller, B., and Makarewicz, O. (2019). Assessing genetic diversity and similarity of 435 KPC-carrying plasmids. Scientific reports 9:11223 .
PUB | DOI | WoS | PubMed | Europe PMC
 
[312]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910
Nguyen, T. V., Wibberg, D., Vigil-Stenman, T., Berckx, F., Battenberg, K., Demchenko, K. N., Blom, J., Fernandez, M. P., Yamanaka, T., Berry, A. M., et al. (2019). Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams. Genome biology and evolution 11, 2273–2291.
PUB | DOI | PubMed | Europe PMC
 
[311]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603
Quehenberger, J., Albersmeier, A., Glatzel, H., Hackl, M., Kalinowski, J., and Spadiut, O. (2019). A defined cultivation medium for Sulfolobus acidocaldarius. JOURNAL OF BIOTECHNOLOGY 301, 56-67.
PUB | DOI | WoS | PubMed | Europe PMC
 
[310]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
Schaffert, L., März, C., Burkhardt, L., Droste, J., Brandt, D., Busche, T., Rosen, W., Schneiker-Bekel, S., Persicke, M., Pühler, A., et al. (2019). Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110. Microbial Cell Factories 18:114.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[309]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
Seeger, B., Mentz, A., Knebel, C., Schmidt, F., Bednarz, H., Niehaus, K., Albaum, S., Kalinowski, J., Noll, T., Steinberg, P., et al. (2019). Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology.
PUB | DOI | PubMed | Europe PMC
 
[308]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr, M., Ferreira, S., Al-Dilaimi, A., Bogeholz, S., Goesmann, A., Kalinowski, J., Knabbe, C., Faber, L., Oliveira, J. P., and Rudolph, V. (2019). Fabry disease: Detection of Alu-mediated exon duplication by NGS. Molecular and cellular probes.
PUB | DOI | WoS | PubMed | Europe PMC
 
[307]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260
Arenas-Lopez, C., Locker, J., Orol, D., Walter, F., Busche, T., Kalinowski, J., Minton, N. P., Kovacs, K., and Winzer, K. (2019). The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16. Biotechnology for biofuels 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[306]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935892
Loi, V. V., Huyen, N. T. T., Busche, T., Tung, Q. N., Gruhlke, M. C. H., Kalinowski, J., Bernhardt, J., Slusarenko, A. J., and Antelmann, H. (2019). Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress. Free radical biology & medicine 139, 55-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
[305]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936033
Tsolis, K. C., Hamed, M. B., Simoens, K., Koepff, J., Busche, T., Rückert, C., Oldiges, M., Kalinowski, J., Anne, J., Kormanec, J., et al. (2019). Secretome Dynamics in a Gram-Positive Bacterial Model. MOLECULAR & CELLULAR PROTEOMICS 18, 423-436.
PUB | DOI | WoS | PubMed | Europe PMC
 
[304]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019
Huennefeld, M., Persicke, M., Kalinowski, J., and Frunzke, J. (2019). The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum. FRONTIERS IN MICROBIOLOGY 10:1039.
PUB | DOI | WoS | PubMed | Europe PMC
 
[303]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936035
Koshla, O. T., Rokytskyy, I. V., Ostash, I. S., Busche, T., Kalinowski, J., Moesker, E., Suessmuth, R. D., Fedorenko, V. O., and Ostash, B. O. (2019). Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2. CYTOLOGY AND GENETICS 53, 1-7.
PUB | DOI | WoS
 
[302]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935870
Haas, T., Graf, M., Niess, A., Busche, T., Kalinowski, J., Blombach, B., and Takors, R. (2019). Identifying the Growth Modulon of Corynebacterium glutamicum. FRONTIERS IN MICROBIOLOGY 10:974.
PUB | DOI | WoS | PubMed | Europe PMC
 
[301]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
Baulig, A., Helmle, I., Bader, M., Wolf, F., Kulik, A., Al-Dilaimi, A., Wibberg, D., Kalinowski, J., Gross, H., and Kaysser, L. (2019). Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase. CHEMICAL SCIENCE 10, 4486-4490.
PUB | DOI | WoS | PubMed | Europe PMC
 
[300]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
Hain, C., Cieslak, C., Mentz, A., Stranzenbach, R., Kalinowski, J., and Stadler, R. (2019). Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke. JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT 17, 1.
PUB | DOI | WoS
 
[299]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273
Gräwe, A., Dreyer, A., Vornholt, T., Barteczko, U., Buchholz, L., Drews, G., Ho, U. L., Jackowski, M. E., Kracht, M., Lüders, J., et al. (2019). A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one 14:0210940.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[298]
2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
Braeuning, A., Lichtenstein, D., Mentz, A., Kalinowski, J., Schmidt, F., Poetz, O., and Lampen, A. (2019). “A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro” in NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, vol. 392, (Springer), S76-S77.
PUB | WoS
 
[297]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
Dostalova, H., Busche, T., Holatko, J., Rucka, L., Stepanek, V., Barvik, I., Nesvera, J., Kalinowski, J., and Patek, M. (2019). Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032. FRONTIERS IN MICROBIOLOGY 9:3287.
PUB | DOI | WoS | PubMed | Europe PMC
 
[296]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
Bischof, L. F., Haurat, M. F., Hoffmann, L., Albersmeier, A., Wolf, J., Neu, A., Pham, T. K., Albaum, S., Jakobi, T., Schouten, S., et al. (2019). Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY 9:3201.
PUB | DOI | WoS | PubMed | Europe PMC
 
[295]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348
Jahanshah, G., Miess, H., Busche, T., Rückert, C., Kalinowski, J., Rokni-Zadeh, H., and Gross, H. (2019). Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran. Microbiology resource announcements 8.
PUB | DOI | WoS | PubMed | Europe PMC
 
[294]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693
Humble, E., Dasmahapatra, K. K., Martinez-Barrio, A., Gregório, I., Forcada, J., Polikeit, A. - C., Goldsworthy, S. D., Goebel, M. E., Kalinowski, J., Wolf, J. B. W., et al. (2018). RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding. G3: Genes|Genomes|Genetics 8, 2709-2722.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[293]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735
Wagner, M., Shen, L., Albersmeier, A., van der Kolk, N., Kim, S., Cha, J., Brasen, C., Kalinowski, J., Siebers, B., and Albers, S. - V. (2018). Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84:19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[292]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026
Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., and Pucker, B. (2018). High Quality de Novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences 5:62.
PUB | PDF | DOI | Download (ext.)
 
[291]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296
Wittchen, M., Busche, T., Gaspar, A. H., Lee, J. H., Ton-That, H., Kalinowski, J., and Tauch, A. (2018). Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation. BMC Genomics 19:82.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[290]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984
Neubauer, P., Widmann, C., Wibberg, D., Schröder, L., Frese, M., Kottke, T., Kalinowski, J., Niemann, H., and Sewald, N. (2018). A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination. PLOS ONE 13:e0196797.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[289]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943
Blifernez-Klassen, O., Chaudhari, S., Klassen, V., Wördenweber, R., Steffens, T., Cholewa, D., Niehaus, K., Kalinowski, J., and Kruse, O. (2018). Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation. PLOS ONE 13:23.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[288]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969
Busche, T., Novakova, R., Al'Dilaimi, A., Homerova, D., Feckova, L., Rezuchova, B., Mingyar, E., Csolleiova, D., Bekeova, C., Winkler, A., et al. (2018). Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin. Genome Announcements 6:e00103-18.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[287]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider, O., Simic, N., Aachmann, F. L., Rückert, C., Kristiansen, K. A., Kalinowski, J., Jiang, Y., Wang, L., Jiang, C. - L., Lale, R., et al. (2018). Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic. FRONTIERS IN MICROBIOLOGY 9:3139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[286]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
Van Loi, V., Busche, T., Preuss, T., Kalinowski, J., Bernhardt, J., and Antelmann, H. (2018). The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus. FRONTIERS IN MICROBIOLOGY 9:3037.
PUB | DOI | WoS | PubMed | Europe PMC
 
[285]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Bracharz, F., Helmdach, D., Aschenbrenner, I., Funck, N., Wibberg, D., Winkler, A., Bohnen, F., Kalinowski, J., Mehlmer, N., and Brueck, T. B. (2018). Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6:200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[284]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986
Schmidt, F. F., Steinhilber, A. E., Hammer, H. S., Mentz, A., Kalinowski, J., Lichtenstein, D., Braeuning, A., Marx-Stoelting, P., Lampen, A., Joos, T., et al. (2018). Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays. TOXICOLOGY LETTERS 295, S87.
PUB | DOI | WoS
 
[283]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021
Jiao, J., Paterson, J., Busche, T., Rückert, C., Kalinowski, J., Harwani, D., and Grosso, H. (2018). Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial Activity. MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6:UNSP e00108-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[282]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296
Whitford, C. M., Dymek, S., Kerkhoff, D., März, C., Schmidt, O., Edich, M., Droste, J., Pucker, B., Rückert, C., and Kalinowski, J. (2018). Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications. Journal of Biological Engineering 12:13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[281]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806
Yuecel, O., Wibberg, D., Philipp, B., and Kalinowski, J. (2018). Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism. MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6:UNSP e01372-17.
PUB | DOI | WoS
 
[280]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679
Busche, T., Tsolis, K. C., Koepff, J., Rebets, Y., Rückert, C., Hamed, M. B., Bleidt, A., Wiechert, W., Lopatniuk, M., Yousra, A., et al. (2018). Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion. FRONTIERS IN MICROBIOLOGY 9:12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[279]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
Schneider, O., Ilic-Tomic, T., Rückert, C., Kalinowski, J., Gencic, M. S., Zivkovic, M. Z., Stankovic, N., Radulovic, N. S., Vasiljevic, B., Nikodinovic-Runic, J., et al. (2018). Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY 9:10.
PUB | DOI | WoS | PubMed | Europe PMC
 
[278]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930282
Lange, J., Muench, E., Mueller, J., Busche, T., Kalinowski, J., Takors, R., and Blombach, B. (2018). Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis. GENES 9:297.
PUB | DOI | WoS | PubMed | Europe PMC
 
[277]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133
Ruwe, M., Rückert, C., Kalinowski, J., and Persicke, M. (2018). Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicum. Frontiers in Microbiology 9:916.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[276]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis, J. S., Wibberg, D., Ramírez-Portilla, C., Rupp, O., Sczyrba, A., Winkler, A., Kalinowski, J., and Wilke, T. (2018). Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts. GigaScience 7:giy075.
PUB | DOI | WoS | PubMed | Europe PMC
 
[275]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult, F., Lee, T. N., Albersmeier, A., Rauch, B., Blumenkamp, P., van der Does, C., Goesmann, A., Kalinowski, J., Albers, S. - V., and Siebers, B. (2018). Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response. NUCLEIC ACIDS RESEARCH 46, 7179-7192.
PUB | DOI | WoS | PubMed | Europe PMC
 
[274]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
Paulus, C., Rebets, Y., Zapp, J., Rückert, C., Kalinowski, J., and Luzhetskyy, A. (2018). New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme. FRONTIERS IN MICROBIOLOGY 9:1959.
PUB | DOI | WoS | PubMed | Europe PMC
 
[273]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
Kibret, M., Guerrero-Garzon, J. F., Urban, E., Zehl, M., Wronski, V. - K., Rückert, C., Busche, T., Kalinowski, J., Rollinger, J. M., Abate, D., et al. (2018). Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry. FRONTIERS IN MICROBIOLOGY 9:13.
PUB | DOI | WoS | PubMed | Europe PMC
 
[272]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971
Ganschow, S., Silvery, J., Kalinowski, J., and Tiemann, C. (2018). toaSTR: A web application for forensic STR genotyping by massively parallel sequencing. Forensic Science International: Genetics 37, 21-28.
PUB | DOI | WoS | PubMed | Europe PMC
 
[271]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
Yushchuk, O., Ostash, I., Vlasiuk, I., Gren, T., Luzhetskyy, A., Kalinowski, J., Fedorenko, V., and Ostash, B. (2018). Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102, 8419-8428.
PUB | DOI | WoS | PubMed | Europe PMC
 
[270]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Engel, K., Sauer, J., Jünemann, S., Winkler, A., Wibberg, D., Kalinowski, J., Tauch, A., and Caspers, B. (2018). Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. Microbial Ecology 76, 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
[269]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
Ludwig, P., Sevin, D. C., Busche, T., Kalinowski, J., Bourdeaux, F., Grininger, M., and Mack, M. (2018). Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis. MICROBIOLOGY-SGM 164, 908-919.
PUB | DOI | WoS | PubMed | Europe PMC
 
[268]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
Kranz, A., Busche, T., Vogel, A., Usadel, B., Kalinowski, J., Bott, M., and Polen, T. (2018). RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H. BMC GENOMICS 19:17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[267]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Adamek, M., Alanjary, M., Sales-Ortells, H., Goodfellow, M., Bull, A. T., Winkler, A., Wibberg, D., Kalinowski, J., and Ziemert, N. (2018). Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species. BMC GENOMICS 19:15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[266]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
Zirpel, B., Degenhardt, F., Zammarelli, C., Wibberg, D., Kalinowski, J., Stehle, F., and Kayser, O. (2018). Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification. JOURNAL OF BIOTECHNOLOGY 272, 40-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[265]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
Schwentner, A., Feith, A., Muench, E., Busche, T., Rückert, C., Kalinowski, J., Takors, R., and Blombach, B. (2018). Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum. METABOLIC ENGINEERING 47, 31-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[264]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
Vu, V. L., Busche, T., Tedin, K., Bernhardt, J., Wollenhaupt, J., Huyen, N. T. T., Weise, C., Kalinowski, J., Wahl, M. C., Fulde, M., et al. (2018). Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus. ANTIOXIDANTS & REDOX SIGNALING, 22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[263]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
Hamed, A., Abdel-Razek, A. S., Frese, M., Wibberg, D., El-Haddad, A. F., Ibrahim, T. M. A., Kalinowski, J., Sewald, N., and Shaaban, M. (2018). N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII. ZEITSCHRIFT FÜR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES 73, 49-57.
PUB | DOI | WoS | PubMed | Europe PMC
 
[262]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
Tsolis, K. C., Tsare, E. - P., Orfanoudaki, G., Busche, T., Kanaki, K., Ramakrishnan, R., Rousseau, F., Schymkowitz, J., Rückert, C., Kalinowski, J., et al. (2018). Comprehensive subcellular topologies of polypeptides in Streptomyces. MICROBIAL CELL FACTORIES 17:12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[261]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
Senges, C. H. R., Al-Dilaimi, A., Marchbank, D. H., Wibberg, D., Winkler, A., Haltli, B., Nowrousian, M., Kalinowski, J., Kerr, R. G., and Bandow, J. E. (2018). The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115, 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[260]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
Wolf, F., Leipoldt, F., Kulik, A., Wibberg, D., Kalinowski, J., and Kaysser, L. (2018). Characterization of the Actinonin Biosynthetic Gene Cluster. CHEMBIOCHEM 19, 1189-1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[259]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
Mori, T., Cahn, J. K. B., Wilson, M. C., Meoded, R. A., Wiebach, V., Martinez, A. F. C., Helfrich, E. J. N., Albersmeier, A., Wibberg, D., Datwyler, S., et al. (2018). Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115, 1718-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[258]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674
Landwehr, W., Kaempfer, P., Glaeser, S. P., Rückert, C., Kalinowski, J., Blom, J., Goesmann, A., Mack, M., Schumann, P., Atasayar, E., et al. (2018). Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68, 382-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[257]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367
Baumgart, M., Unthan, S., Kloss, R., Radek, A., Polen, T., Tenhaef, N., Müller, M. F., Küberl, A., Siebert, D., Brühl, N., et al. (2018). Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology. ACS Synthetic Biology 7, 132–144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[256]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
Heine, T., Zimmerling, J., Ballmann, A., Kleeberg, S. B., Rückert, C., Busche, T., Winkler, A., Kalinowski, J., Poetsch, A., Scholtissek, A., et al. (2018). On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84:16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[255]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
Spohn, M., Edenhart, S., Alanjary, M., Ziemert, N., Wibberg, D., Kalinowski, J., Niedermeyer, T. H. J., Stegmann, E., and Wohlleben, W. (2018). Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA). METALLOMICS 10, 722-734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[254]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Koepff, J., Morschett, H., Busche, T., Winkler, A., Kalinowski, J., Wiechert, W., and Oldiges, M. (2018). Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans. BIOTECHNOLOGY PROGRESS 34, 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[253]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403
Hossain, M. S., Persicke, M., ElSayed, A. I., Kalinowski, J., and Dietz, K. - J. (2017). Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet. Journal of Experimental Botany 68, 5961-5976.
PUB | DOI | WoS | PubMed | Europe PMC
 
[252]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913404
Grimm, I., Dumke, J., Vollmer, T., Hinse, D., Rückert, C., Kalinowski, J., Knabbe, C., and Dreier, J. (2017). Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831. Genome Announcements 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[251]
2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
Tokovenko, B., Rückert, C., Kalinowski, J., Mohammadipanah, F., Wink, J., Rosenkränzer, B., Myronovskyi, M., and Luzhetskyy, A. (2017). Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease. Genome Announc 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[250]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Torres Tejerizo, G. A., Wibberg, D., Winkler, A., Ormeño-Orrillo, E., Martínez-Romero, E., Niehaus, K., Pühler, A., Kalinowski, J., Lagares, A., Schlüter, A., et al. (2017). Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T. Genome Announcements 5, e01513-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[249]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916525
Dostalova, H., Holatko, J., Busche, T., Rucka, L., Rapoport, A., Halada, P., Nesvera, J., Kalinowski, J., and Patek, M. (2017). Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum. AMB EXPRESS 7:133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[248]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916447
Schneefeld, M., Busche, T., Geffers, R., Kalinowski, J., and Bange, F. - C. (2017). The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE 12:e0186505.
PUB | DOI | WoS | PubMed | Europe PMC
 
[247]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432
Celis, J. S., Edgell, D. R., Stelbrink, B., Wibberg, D., Hauffe, T., Blom, J., Kalinowski, J., and Wilke, T. (2017). Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia). PLOS ONE 12:e0173734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[246]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913400
Nouioui, I., Rückert, C., Willemse, J., van Wezel, G. P., Klenk, H. - P., Busche, T., Kalinowski, J., Bredholt, H., and Zotchev, S. B. (2017). Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. Antonie Van Leeuwenhoek. Journal of Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[245]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911274
Crnovčić, I., Rückert, C., Semsary, S., Lang, M., Kalinowski, J., and Keller, U. (2017). Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C. Adv Appl Bioinform Chem 10, 29-46.
PUB | DOI | PubMed | Europe PMC
 
[244]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908076
Makarewicz, O., Lucas, M., Brandt, C., Herrmann, L., Albersmeier, A., Rückert, C., Blom, J., Goesmann, A., van der Linden, M., Kalinowski, J., et al. (2017). Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15B. PLoS One 12, e0169370.
PUB | DOI | WoS | PubMed | Europe PMC
 
[243]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272
Hillion, M., Bernhardt, J., Busche, T., Rossius, M., Maaß, S., Becher, D., Rawat, M., Wirtz, M., Hell, R., Rückert, C., et al. (2017). Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress. Sci Rep 7:1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[242]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070
Paulus, C., Rebets, Y., Tokovenko, B., Nadmid, S., Terekhova, L. P., Myronovskyi, M., Zotchev, S. B., Rückert, C., Braig, S., Zahler, S., et al. (2017). New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18. SCIENTIFIC REPORTS 7:42382.
PUB | DOI | WoS | PubMed | Europe PMC
 
[241]
2017 | Datenpublikation | PUB-ID: 2930821
Karsten, L., Bergen, D., Drake, C., Dymek, S., Edich, M., Haak, M., Kerkhoff, D., Kerkhoff, Y., Liebers, M., März, C., et al. (2017). Expanding The Genetic Code. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[240]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038
Klassen, V., Blifernez-Klassen, O., Wibberg, D., Winkler, A., Kalinowski, J., Posten, C., and Kruse, O. (2017). Highly efficient methane generation from untreated microalgae biomass. Biotechnology for Biofuels 10:186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[239]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
Wolf, T., Droste, J., Gren, T., Ortseifen, V., Schneiker-Bekel, S., Zemke, T., Pühler, A., and Kalinowski, J. (2017). The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110. BMC Genomics 18:562.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[238]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668
Friehs, K., Schwarzhans, J. P., Luttermann, T., Wibberg, D., Winkler, A., Hübner, W., Huser, T., and Kalinowski, J. (2017). A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production. Frontiers in Microbiology 8:780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[237]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386
Jaeger, D., Winkler, A., Mussgnug, J. H., Kalinowski, J., Goesmann, A., and Kruse, O. (2017). Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation. Biotechnology for Biofuels 10:197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[236]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913963
Ruwe, M., Kalinowski, J., and Persicke, M. (2017). Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicum. Frontiers in Microbiology 8:1601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[235]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662
Fernandes de Brito, L., Irla, M., Kalinowski, J., and Wendisch, V. F. (2017). Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology. BMC Genomics 18:846.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[234]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912419
Taniguchi, H., Busche, T., Patschkowski, T., Niehaus, K., Patek, M., Kalinowski, J., and Wendisch, V. F. (2017). Physiological roles of sigma factor SigD in Corynebacterium glutamicum. BMC Microbiology 17:158.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[233]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110
Kulis-Horn, R., Rückert, C., Kalinowski, J., and Persicke, M. (2017). Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond. BMC Microbiology 17:161.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[232]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912983
Boehm, K., Meyer, F., Rhomberg, A., Kalinowski, J., Donovan, C., and Bramkamp, M. (2017). Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with Diploidy. MBIO 8:e00511-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[231]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
Wolf, T., Schneiker-Bekel, S., Neshat, A., Ortseifen, V., Wibberg, D., Zemke, T., Pühler, A., and Kalinowski, J. (2017). Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis. JOURNAL OF BIOTECHNOLOGY 251, 112-123.
PUB | DOI | WoS | PubMed | Europe PMC
 
[230]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916533
Sun, Y. - Q., Busche, T., Rückert, C., Paulus, C., Rebets, Y., Novakova, R., Kalinowski, J., Luzhetskyy, A., Kormanec, J., Sekurova, O. N., et al. (2017). Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites. ACS SYNTHETIC BIOLOGY 6, 1026-1033.
PUB | DOI | WoS | PubMed | Europe PMC
 
[229]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017
Kracht, O. N., Ammann, A. - C., Stockmann, J., Wibberg, D., Kalinowski, J., Piotrowski, M., Kerr, R., Brueck, T., and Kourist, R. (2017). Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY 136, 15-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[228]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912973
Stark, H., Wolf, J., Albersmeier, A., Pham, T. K., Hofmann, J. D., Siebers, B., Kalinowski, J., Wright, P. C., Neumann-Schaal, M., and Schomburg, D. (2017). Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus. FEBS JOURNAL 284, 2078-2095.
PUB | DOI | WoS | PubMed | Europe PMC
 
[227]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911994
Wolf, F., Bauer, J. S., Bendel, T. M., Kulik, A., Kalinowski, J., Gross, H., and Kaysser, L. (2017). Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and Cystargolide. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56, 6665-6668.
PUB | DOI | WoS | PubMed | Europe PMC
 
[226]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911273
Koepff, J., Keller, M., Tsolis, C. K., Busche, T., Rückert, C., Hamed, M. B., Anné, J., Kalinowski, J., Wiechert, W., Economou, A., et al. (2017). Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation. Biotechnol Bioeng 114, 2011-2022.
PUB | DOI | WoS | PubMed | Europe PMC
 
[225]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380
Hamed, A., Abdel-Razek, A. S., Frese, M., Wibberg, D., El-Haddad, A. F., Ibrahim, T. M. A., Kalinowski, J., Sewald, N., and Shaaban, M. (2017). New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4. Zeitschrift für Naturforschung B 72, 53-62.
PUB | DOI | WoS
 
[224]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916444
Schwarzhans, J. P., Luttermann, T., Geier, M., Kalinowski, J., and Friehs, K. (2017). Towards systems metabolic engineering in Pichia pastoris. BIOTECHNOLOGY ADVANCES 35, 681-710.
PUB | DOI | WoS | PubMed | Europe PMC
 
[223]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Kalinowski, J., Ahrens, B., Al-Dilaimi, A., Winkler, A., Wibberg, D., Schleenbecker, U., Rückert, C., Wölfel, R., and Grass, G. (2017). Isolation and whole genome analysis of endospore-forming bacteria from heroin. Forensic Sci Int Genet 32, 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[222]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
Ortseifen, V., Kalinowski, J., Pühler, A., and Rückert, C. (2017). The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose. J Biotechnol 262, 84-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[221]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Jahn, L., Schafhauser, T., Wibberg, D., Rückert, C., Winkler, A., Kulik, A., Weber, T., Flor, L., van Pée, K. - H., Kalinowski, J., et al. (2017). Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin. Journal of Biotechnology 257, 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[220]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918206
Kämpfer, P., Rückert, C., Blom, J., Goesmann, A., Wink, J., Kalinowski, J., and Glaeser, S. P. (2017). Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953. International Journal of Systematic and Evolutionary Microbiology 68, 42-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[219]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916527
Rieke, S., Heise, T., Schmidt, F., Haider, W., Bednarz, H., Niehaus, K., Mentz, A., Kalinowski, J., Hirsch-Ernst, K. I., Steinberg, P., et al. (2017). Mixture effects of azole fungicides on the adrenal gland in a broad dose range. TOXICOLOGY 385, 28-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[218]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913401
Kämpfer, P., Rückert, C., Blom, J., Goesmann, A., Wink, J., Kalinowski, J., and Glaeser, S. P. (2017). Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms. International Journal of Systematic and Evolutionary Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[217]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913406
Albersmeier, A., Pfeifer-Sancar, K., Rückert, C., and Kalinowski, J. (2017). Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum. Journal of Biotechnology 257, 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[216]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., and Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements 4:e00524-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[215]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Busche, T., Winkler, A., Wedderhoff, I., Rückert, C., Kalinowski, J., and Lucana, D. O. de O. (2016). Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes. PLOS ONE 11:e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[214]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685
Schaffert, L., Albersmeier, A., Winkler, A., Kalinowski, J., Zotchev, S. B., and Rückert, C. (2016). Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge. Standards in Genomic Sciences 11:91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[213]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904989
Shah, A., Schielzeth, H., Albersmeier, A., Kalinowski, J., and Hoffman, J. (2016). High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome. Ecology and Evolution 16, 5718-5727.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[212]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Schwarzhans, J. P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J., and Friehs, K. (2016). Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing. Scientific Reports 6:38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[211]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Schwarzhans, J. P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J., and Friehs, K. (2016). Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization. Microbial Cell Factories 15:84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[210]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143
Wibberg, D., Al-Dilaimi, A., Busche, T., Wedderhoff, I., Schrempf, H., Kalinowski, J., and Lucana, D. O. de O. (2016). Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose. JOURNAL OF BIOTECHNOLOGY 222, 13-14.
PUB | DOI | WoS | PubMed | Europe PMC
 
[209]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., Persicke, M., Pühler, A., and Kalinowski, J. (2016). Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology 232, 79-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[208]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907748
Jagmann, N., Bleicher, V., Busche, T., Kalinowski, J., and Philipp, B. (2016). The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila. ENVIRONMENTAL MICROBIOLOGY 18, 3550-3564.
PUB | DOI | WoS | PubMed | Europe PMC
 
[207]
2016 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907640
Baumgart, M., Unthan, S., Radek, A., Herbst, M., Siebert, D., Brühl, N., Bartsch, A., Bott, M., Wiechert, W., Marin, K., et al. (2016). Chassis organism from Corynebacterium glutamicum – Genome reduction as a tool toward improved strains for synthetic biology and industrial biotechnology. New Biotechnology 33:S25.
PUB | DOI | WoS
 
[206]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907722
Wolf, J., Stark, H., Fafenrot, K., Albersmeier, A., Pham, T. K., Mueller, K. B., Meyer, B. H., Hoffmann, L., Shen, L., Albaum, S. P., et al. (2016). A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose. MOLECULAR MICROBIOLOGY 102, 882-908.
PUB | DOI | WoS | PubMed | Europe PMC
 
[205]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis, J. S., Wibberg, D., Winkler, A., Wilke, T., and Kalinowski, J. (2016). Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA 27, 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[204]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
Campos, S. B., Lisboa, B. B., Camargo, F. A. O., Bayer, C., Sczyrba, A., Dirksen, P., Albersmeier, A., Kalinowski, J., Beneduzi, A., Costa, P. B., et al. (2016). Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems. Soil Biology and Biochemistry 96, 191-197.
PUB | DOI | WoS
 
[203]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947
Zimmermann, J., Rückert, C., Kalinowski, J., and Lipski, A. (2016). Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk. Int J Syst Evol Microbiol 66, 5288-5293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[202]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905959
Horbal, L., Ostash, B., Luzhetskyy, A., Walker, S., Kalinowski, J., and Fedorenko, V. (2016). A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 100, 7629-7638.
PUB | DOI | WoS | PubMed | Europe PMC
 
[201]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf, T., Gren, T., Thieme, E., Wibberg, D., Zemke, T., Pühler, A., and Kalinowski, J. (2016). Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System. Journal of Biotechnology 231, 122-128.
PUB | DOI | WoS | PubMed | Europe PMC
 
[200]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter, F., Grenz, S., Ortseifen, V., Persicke, M., and Kalinowski, J. (2016). Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity. Journal of Biotechnology 232, 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[199]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Moghadam, M. S., Albersmeier, A., Winkler, A., Cimmino, L., Rise, K., Hohmann-Marriott, M. F., Kalinowski, J., Rückert, C., Wentzel, A., and Lale, R. (2016). Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics 17, 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[198]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Wolf, T., Zemke, T., Wehmeier, U. F., Hecker, M., et al. (2016). Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters. Journal of Proteomics 131, 140-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[197]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905633
Manderscheid, N., Bilyk, B., Busche, T., Kalinowski, J., Paululat, T., Bechthold, A., Petzke, L., and Luzhetskyy, A. (2016). An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous host. JOURNAL OF BIOTECHNOLOGY 232, 110-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[196]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen, T. V., Wibberg, D., Battenberg, K., Blom, J., Vanden Heuvel, B., Berry, A. M., Kalinowski, J., and Pawlowski, K. (2016). An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH. BMC Genomics 17:796.
PUB | DOI | WoS | PubMed | Europe PMC
 
[195]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2723776
Heravi, K. M., Lange, J., Watzlawick, H., Kalinowski, J., and Altenbuchner, J. (2015). Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor. Journal of Bacteriology 197, 959-972.
PUB | DOI | WoS | PubMed | Europe PMC
 
[194]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901251
Leipoldt, F., Zeyhle, P., Kulik, A., Kalinowski, J., Heide, L., and Kaysser, L. (2015). Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid Compounds. Plos One 10:e0143237.
PUB | DOI | WoS | PubMed | Europe PMC
 
[193]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758666
Muller, C., Cacaci, M., Sauvageot, N., Sanguinetti, M., Rattei, T., Eder, T., Giard, J. - C., Kalinowski, J., Hain, T., and Hartke, A. (2015). The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice. PLoS ONE 10:e0126143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[192]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., and Hoffman, J. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics 16:1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[191]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868
Persicke, M., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., and Rückert, C. (2015). Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences 10:5.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[190]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344
Irla, M., Neshat, A., Brautaset, T., Rückert, C., Kalinowski, J., and Wendisch, V. F. (2015). Transcriptome analysis of thermophilic methylotrophic *Bacillus methanolicus* MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape. BMC Genomics 16:73.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[189]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764291
Ostash, B., Yushchuk, O., Tistechok, S., Mutenko, H., Horbal, L., Muryn, A., Dacyuk, Y., Kalinowski, J., Luzhetskyy, A., and Fedorenko, V. (2015). The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expression. World Journal of Microbiology and Biotechnology 31, 1297-1301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[188]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746
Rückert, C., Leipoldt, F., Zeyhle, P., Fenical, W., Jensen, P. R., Kalinowski, J., Heide, L., and Kaysser, L. (2015). Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry. Journal of Biotechnology 216, 140-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
[187]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555
Müller, C., Birmes, F. S., Rückert, C., Kalinowski, J., and Fetzner, S. (2015). Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuation. Applied and Environmental Microbiology 81, 7720-7729.
PUB | DOI | WoS | PubMed | Europe PMC
 
[186]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Rückert, C., Birmes, F. S., Müller, C., Niewerth, H., Winkler, A., Fetzner, S., and Kalinowski, J. (2015). Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules. Journal of biotechnology 211, 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[185]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434
Oelschlägel, M., Rückert, C., Kalinowski, J., Schmidt, G., Schlömann, M., and Tischler, D. (2015). Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid. International journal of systematic and evolutionary microbiology 65, 3008-3015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[184]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160
Kurosawa, K., Plassmeier, J., Kalinowski, J., Rückert, C., and Sinskey, A. J. (2015). Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production. Metabolic engineering 30, 89-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[183]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771
Unthan, S., Baumgart, M., Radek, A., Herbst, M., Siebert, D., Brühl, N., Bartsch, A., Bott, M., Wiechert, W., Marin, K., et al. (2015). Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clusters. Biotechnology Journal 10, 290-301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[182]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, V., Winkler, A., Albersmeier, A., Wendler, S., Pühler, A., Kalinowski, J., and Rückert, C. (2015). Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid. Journal of Biotechnology 194, 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[181]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700185
Al-Dilaimi, A., Bednarz, H., Lömker, A., Niehaus, K., Kalinowski, J., and Rückert, C. (2015). Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied banana. International journal of systematic and evolutionary microbiology 65, 177-182.
PUB | DOI | WoS | PubMed | Europe PMC
 
[180]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Walter, F., Wolf, T., Zemke, T., Wehmeier, U. F., et al. (2015). Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster. Journal of Proteomics 125, 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[179]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Rückert, C., Albersmeier, A., Busche, T., Jaenicke, S., Winkler, A., Friðjónsson, Ó. H., Hreggviðsson, G. Ó., Lambert, C., Badcock, D., Bernaerts, K., et al. (2015). Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology 199, 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[178]
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2902782
Knebel, C., Marx-Stoelting, P., Pfeil, R., Seeger, B., Steinberg, P., Mentz, A., Bednarz, H., Niehaus, K., Kalinowski, J., Noll, T., et al. (2015). Multi-level omics analysis of combination effects of (tri-)azoles in a set of different cell lines. Toxicology Letters 238, S355.
PUB | DOI | WoS
 
[177]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901032
Mahr, R., Gaetgens, C., Gaetgens, J., Polen, T., Kalinowski, J., and Frunzke, J. (2015). Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum. Metabolic Engineering 32, 184-194.
PUB | DOI | WoS | PubMed | Europe PMC
 
[176]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser, T., Wibberg, D., Rückert, C., Winkler, A., Flor, L., van Pée, K. - H., Fewer, D. P., Sivonen, K., Jahn, L., Ludwig-Müller, J., et al. (2015). Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential. Journal of Biotechnology 211, 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[175]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
Kulis-Horn, R., Persicke, M., and Kalinowski, J. (2015). Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibition. Journal of Biotechnology 206, 26-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[174]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
Fernandes de Brito, L., Bach, E., Kalinowski, J., Rückert, C., Wibberg, D., Passaglia, L., and Wendisch, V. F. (2015). Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium. Journal of Biotechnology 207, 30-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[173]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029
Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE 9, e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[172]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
Rebets, Y., Tokovenko, B., Lushchyk, I., Rückert, C., Zaburannyi, N., Bechthold, A., Kalinowski, J., and Luzhetskyy, A. (2014). Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae. BMC genomics 15, 885.
PUB | DOI | WoS | PubMed | Europe PMC
 
[171]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
Lübke, N. - C., Wolf, T., Braun, R., Rückert, C., and Kalinowski, J. (2014). Vom Schärfesensor zur mikrobiellen Brennstoffzelle. BIOspektrum 20, 468-469.
PUB | DOI
 
[170]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853
Zeyhle, P., Bauer, J. S., Kalinowski, J., Shin-ya, K., Gross, H., and Heide, L. (2014). Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete. PLoS ONE 9.
PUB | DOI | WoS | PubMed | Europe PMC
 
[169]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., and Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9, e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[168]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
Neshat, A., Mentz, A., Rückert, C., and Kalinowski, J. (2014). Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis. Journal of biotechnology 190, 55-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
[167]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., Stadermann, K. B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., and Goesmann, A. (2014). ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30, 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
[166]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., Stoye, J., and Pühler, A. (2014). Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology 190, 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[165]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
Flinspach, K., Rückert, C., Kalinowski, J., Heide, L., and Apel, A. K. (2014). Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin. Genome announcements 2, e01146-13.
PUB | DOI | PubMed | Europe PMC
 
[164]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
Wilson, M. C., Mori, T., Rückert, C., Uria, A. R., Helf, M. J., Takada, K., Gernert, C., Steffens, U. A. E., Heycke, N., Schmitt, S., et al. (2014). An environmental bacterial taxon with a large and distinct metabolic repertoire. Nature 506, 58-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[163]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148
Kulis-Horn, R., Persicke, M., and Kalinowski, J. (2014). Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum. Microbial Biotechnology 7, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC
 
[162]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289
Al-Dilaimi, A., Albersmeier, A., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer. Journal of Biotechnology 189, 70-71.
PUB | DOI | WoS | PubMed | Europe PMC
 
[161]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
Walter, F., Albersmeier, A., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese. Journal of Biotechnology 189, 76-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
[160]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656728
Chi, B. K., Busche, T., Van Laer, K., Baesell, K., Becher, D., Clermont, L., Seibold, G. M., Persicke, M., Kalinowski, J., Messens, J., et al. (2014). Protein S-Mycothiolation Functions as Redox-Switch and Thiol Protection Mechanism in Corynebacterium glutamicum Under Hypochlorite Stress. Antioxidants & Redox Signaling 20, 589-605.
PUB | DOI | WoS | PubMed | Europe PMC
 
[159]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Irla, M., Neshat, A., Winkler, A., Albersmeier, A., Heggeset, T. M., Brautaset, T., Kalinowski, J., Wendisch, V. F., and Rückert, C. (2014). Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph. Journal of Biotechnology 188, 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707667
Zeyhle, P., Bauer, J. S., Steimle, M., Leipoldt, F., Roesch, M., Kalinowski, J., Gross, H., and Heide, L. (2014). A Membrane-Bound Prenyltransferase Catalyzes the O-Prenylation of 1,6-Dihydroxyphenazine in the Marine Bacterium Streptomyces sp CNQ-509. ChemBioChem 15, 2385-2392.
PUB | DOI | WoS | PubMed | Europe PMC
 
[157]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986
Rückert, C., Kalinowski, J., Heide, L., and Apel, A. K. (2014). Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin. Genome announcements 2, e01147-13.
PUB | DOI | PubMed | Europe PMC
 
[156]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806
Busche, T., Pfeifer-Sancar, K., Rückert, C., and Kalinowski, J. (2014). Identifizierung von Promotoren in Corynebacterium glutamicum. BIOspektrum 20, 284-287.
PUB | DOI
 
[155]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., Biener, R., Schwartz, D., and Kalinowski, J. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689749
Milse, J., Petri, K., Rückert, C., and Kalinowski, J. (2014). Transcriptional response of Corynebacterium glutamicum ATCC 13032 to hydrogen peroxide stress and characterization of the OxyR regulon. Journal of Biotechnology 190, 40-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662843
Myronovskyi, M., Tokovenko, B., Brötz, E., Rückert, C., Kalinowski, J., and Luzhetskyy, A. (2014). Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activation. Applied microbiology and biotechnology 98, 795-806.
PUB | DOI | WoS | PubMed | Europe PMC
 
[152]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693535
Stegmann, E., Albersmeier, A., Spohn, M., Gert, H., Weber, T., Wohlleben, W., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology 189, 46-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler, S., Ortseifen, V., Persicke, M., Klein, A., Neshat, A., Niehaus, K., Schneiker-Bekel, S., Walter, F., Wehmeier, U. F., Kalinowski, J., et al. (2014). Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110. Journal of Biotechnology 191, 113-120.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676082
Ian, E., Malko, D. B., Sekurova, O. N., Bredholt, H., Rückert, C., Borisova, M. E., Albersmeier, A., Kalinowski, J., Gelfand, M. S., and Zotchev, S. B. (2014). Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential. PloS one 9, 96719.
PUB | DOI | WoS | PubMed | Europe PMC
 
[149]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101
Schaffert, L., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., and Rückert, C. (2013). Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T). Standards in Genomic Sciences 8, 516-524.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[148]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977
Petri, K., Walter, F., Persicke, M., Rückert, C., and Kalinowski, J. (2013). A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum. BMC Genomics 14:713.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[147]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
Mentz, A., Neshat, A., Pfeifer-Sancar, K., Pühler, A., Rückert, C., and Kalinowski, J. (2013). Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics 14, 714.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[146]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373
Pfeifer-Sancar, K., Mentz, A., Rückert, C., and Kalinowski, J. (2013). Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique. BMC Genomics 14, 888.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[145]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler, S., Hürtgen, D., Kalinowski, J., Klein, A., Niehaus, K., Schulte, F., Schwientek, P., Wehlmann, H., Wehmeier, U. F., and Pühler, A. (2013). The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism. Journal of Biotechnology 167, 178-189.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Roetzer, A., Diel, R., Kohl, T. A., Rückert, C., Nübel, U., Blom, J., Wirth, T., Jaenicke, S., Schuback, S., Rüsch-Gerdes, S., et al. (2013). Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine 10, e1001387.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555771
Pátek, M., Holátko, J., Busche, T., Kalinowski, J., and Nešvera, J. (2013). Corynebacterium glutamicum promoters: a practical approach. Microbial Biotechnology 6, 103-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[140]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625606
Klaffl, S., Brocker, M., Kalinowski, J., Eikmanns, B. J., and Bott, M. (2013). Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum. Journal Of Bacteriology 195, 4283-4296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614036
Baumgart, M., Unthan, S., Rückert, C., Sivalingam, J., Grünberger, A., Kalinowski, J., Bott, M., Noack, S., and Frunzke, J. (2013). Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnology. Applied and environmental microbiology 79, 6006-6015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U. F., Kalinowski, J., Stoye, J., and Pühler, A. (2013). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology 167, 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier, J., Busche, T., Molck, S., Persicke, M., Pühler, A., Rückert, C., and Kalinowski, J. (2013). A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways. Journal of Biotechnology 163, 225-232.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., and Kalinowski, J. (2013). Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences 9, 505-513.
PUB | DOI | WoS | PubMed | Europe PMC
 
[132]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528277
Busche, T., Silar, R., Picmanova, M., Patek, M., and Kalinowski, J. (2012). Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum. BMC Genomics 13, 445.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[131]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Niehaus, K., Szczepanowski, R., and Kalinowski, J. (2012). Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T). Standards in Genomic Sciences 7, 284-293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
Jankowitsch, F., Schwarz, J., Rückert, C., Gust, B., Szczepanowski, R., Blom, J., Pelzer, S., Kalinowski, J., and Mack, M. (2012). The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. Journal of bacteriology 194, 6818-6827.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530872
Rückert, C., Licht, K., Kalinowski, J., Espírito Santo, C., Antwerpen, M., Hanczaruk, M., Reischl, U., Holzmann, T., Gessner, A., Tiemann, C., et al. (2012). Draft Genome Sequence of Bacillus anthracis UR-1, Isolated from a German Heroin User. Journal of bacteriology 194, 5997-5998.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560259
Heyer, A., Gaetgens, C., Hentschel, E., Kalinowski, J., Bott, M., and Frunzke, J. (2012). The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicum. Microbiology 158, 3020-3031.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548248
Antwerpen, M., Proença, D. N., Rückert, C., Licht, K., Kalinowski, J., Hanczaruk, M., Tiemann, C., and Grass, G. (2012). Draft genome sequence of Bacillus anthracis BF-1, Isolated from Bavarian cattle. Journal of bacteriology 194, 6360-6361.
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2545867
Klenke, C., Janowski, S. J., Borck, D., Widera, D., Ebmeyer, J., Kalinowski, J., Leichtle, A., Hofestädt, R., Upile, T., Kaltschmidt, C., et al. (2012). Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome Microarrays. PLoS One 7, e52718.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2530508
Piel, J., Freeman, M. F., Gurgui, C., Helf, M., Morinaka, B., Wilson, M. C., Mori, T., Rückert, C., Steffens, U., Takada, K., et al. (2012). Chemical surprises from an uncultivated sponge symbiont. Planta Medica 78, 1040-+.
PUB | WoS
 
[124]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486027
Laslo, T., von Zaluskowski, P., Gabris, C., Lodd, E., Rückert, C., Dangel, P., Kalinowski, J., Auchter, M., Seibold, G., and Eikmanns, B. J. (2012). Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlR. Journal of bacteriology 194, 941-955.
PUB | DOI | WoS | PubMed | Europe PMC
 
[123]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., Stoye, J., and Pühler, A. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13:112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[122]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501701
Beckert, P., Hillemann, D., Kohl, T., Kalinowski, J., Richter, E., Niemann, S., and Feuerriegel, S. (2012). rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains. Antimicrobial Agents and Chemotherapy 56, 2743-2745.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., and Neuweger, H. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics 8, 310-322.
PUB | DOI | WoS
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Strobel, T., Al-Dilaimi, A., Blom, J., Gessner, A., Kalinowski, J., Luzhetska, M., Pühler, A., Szczepanowski, R., Bechthold, A., and Rückert, C. (2012). Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae. BMC Genomics 13, 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2520163
Chen, X., Kohl, T. A., Rückert, C., Rodionov, D. A., Li, L. - H., Ding, J. - Y., Kalinowski, J., and Liu, S. - J. (2012). Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicum. Applied and environmental microbiology 78, 5796-5804.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., and Dreier, J. (2011). Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics 12, 400.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke, M., Plassmeier, J., Neuweger, H., Rückert, C., Pühler, A., and Kalinowski, J. (2011). Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites. Journal of Biotechnology 154, 171-178.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier, J., Persicke, M., Pühler, A., Sterthoff, C., Rückert, C., and Kalinowski, J. (2011). Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum. Journal of Biotechnology 159, 1-11.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[115]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2440558
Jankowitsch, F., Kuehm, C., Kellner, R., Kalinowski, J., Pelzer, S., Macheroux, P., and Mack, M. (2011). A Novel N,N-8-Amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) Catalyzing the Two Terminal Steps of Roseoflavin Biosynthesis in Streptomyces davawensis. Journal of Biological Chemistry 286, 38275-38285.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289491
Kalinowski, J. (2011). Regulatory and Metabolic Networks for Amino Acid Production by Corynebacterium glutamicum. Journal of Biotechnology 154, 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., and Dreier, J. (2011). Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis. Clinical Chemistry and Laboratory Medicine 49, S837.
PUB | WoS
 
[112]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., and Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093546
Auchter, M., Laslo, T., Fleischer, C., Schiller, L., Arndt, A., Gaigalat, L., Kalinowski, J., and Eikmanns, B. J. (2011). Control of adhA and sucR expression by the SucR regulator in Corynebacterium glutamicum. Journal of Biotechnology 152, 77-86.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1896635
Auchter, M., Cramer, A., Hüser, A., Rückert, C., Emer, D., Schwarz, P., Arndt, A., Lange, C., Kalinowski, J., Wendisch, V. F., et al. (2011). RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolism. J Biotechnol 154, 126-139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski, J., Rückert, C., Szczepanowski, R., and Pühler, A. (2010). Advanced Genomics and Transcriptomics of Industrial Microorganisms. Chemie Ingenieur Technik 82, 1518-1519.
PUB | DOI
 
[108]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796753
Fraenzel, B., Troetschel, C., Rückert, C., Kalinowski, J., Poetsch, A., and Wolters, D. A. (2010). Adaptation of Corynebacterium glutamicum to salt-stress conditions. PROTEOMICS 10, 445-457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795939
Chao, T. - C., Kalinowski, J., Nyalwidhe, J., and Hansmeier, N. (2010). Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citrate. PROTEOMICS 10, 1673-1684.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968272
Fraenzel, B., Poetsch, A., Troetschel, C., Persicke, M., Kalinowski, J., and Wolters, D. A. (2010). Quantitative proteomic overview on the Corynebacterium glutamicum L-lysine producing strain DM1730. Journal of Proteomics 73, 2336-2353.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., Schneider, J., Kalinowski, J., and Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3:82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[104]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich, S. S., Brinkrolf, K., Gaigalat, L., Hueser, A. T., Rey, D. A., Mohrbach, T., Marin, K., Pühler, A., Tauch, A., and Kalinowski, J. (2009). Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032. MICROBIOLOGY 155, 150-164.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk, J., Kohl, T. A., Goesmann, A., Kalinowski, J., and Baumbach, J. (2009). From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. NUCLEIC ACIDS RESEARCH 37, e97.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588891
Follmann, M., Ochrombel, I., Kraemer, R., Troetschel, C., Poetsch, A., Rückert, C., Hueser, A., Persicke, M., Seiferling, D., Kalinowski, J., et al. (2009). Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis. BMC Genomics 10, 621.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[100]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635517
Barreiro, C., Nakunst, D., Hueser, A. T., de Paz, H. D., Kalinowski, J., and Martin, J. F. (2009). Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum. MICROBIOLOGY-SGM 155, 359-372.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2397428
Rückert, C., and Kalinowski, J. (2008). “Sulfur Metabolism in Corynebacterium glutamicum” in Corynebacteria: Genomics and Molecular Biology, Burkovski, A. ed. (Norfolk, UK: Caister Academic Press), 217-240.
PUB
 
[98]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf, K., Ploeger, S., Solle, S., Brune, I., Nentwich, S. S., Hueser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2008). The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. MICROBIOLOGY 154, 1068-1081.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
Gkogkoglou, K., Mentz, A., Albersmeier, A., Kalinowski, J., and Giegerich, R. (2008). Looking for non-coding RNAs in Corynebacterium glutamicum. FEBS JOURNAL 275, 153.
PUB | WoS
 
[96]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
Rückert, C., Milse, J., Albersmeier, A., Koch, D. J., Pühler, A., and Kalinowski, J. (2008). The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC GENOMICS 9, 483.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[95]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., Goesmann, A., Graefen, I., Kalinowski, J., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY 190, 2138-2149.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
PUB
 
[92]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[91]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596355
Walter, B., Haenssler, E., Kalinowski, J., and Burkovski, A. (2007). Nitrogen metabolism and nitrogen control in corynebacteria: Variations of a common theme. JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 12, 131-138.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, I., Jochmann, N., Brinkrolf, K., Hueser, A. T., Gerstmeir, R., Eikmanns, B. J., Kalinowski, J., Pühler, A., and Tauch, A. (2007). The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. JOURNAL OF BACTERIOLOGY 189, 2720-2733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, N., Chao, T. - C., Daschkey, S., Muesken, M., Kalinowski, J., Pühler, A., and Tauch, A. (2007). A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411. PROTEOMICS 7, 1076-1096.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1632884
Haenssler, E., Mueller, T., Jessberger, N., Voelzke, A., Plassmeier, J., Kalinowski, J., Kraemer, R., and Burkovski, A. (2007). FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 76, 625-632.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596102
Larisch, C., Nakunst, D., Hueser, A. T., Tauch, A., and Kalinowski, J. (2007). The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase. BMC Genomics 8:4.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[85]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593292
Plassmeier, J., Barsch, A., Persicke, M., Niehaus, K., and Kalinowski, J. (2007). Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry. Journal of Biotechnology 130, 354-363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, D., Larisch, C., Hueser, A. T., Tauch, A., Pühler, A., and Kalinowski, J. (2007). The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. JOURNAL OF BACTERIOLOGY 189, 4696-4707.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat, L., Schlüter, J. - P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., and Kalinowski, J. (2007). The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Molecular Biology 8, 104.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[82]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, I., Becker, A., Paarmann, D., Albersmeier, A., Kalinowski, J., Pühler, A., and Tauch, A. (2006). Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. J Biotechnol 127, 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2006 | Zeitschriftenaufsatz | PUB-ID: 2405187
Feng, J., Che, Y., Milse, J., Yin, Y. - J., Liu, L., Rückert, C., Shen, X. - H., Qi, S. - W., Kalinowski, J., and Liu, S. - J. (2006). The Gene ncgl2918 Encodes a Novel Maleylpyruvate Isomerase That Needs Mycothiol as Cofactor and Links Mycothiol Biosynthesis and Gentisate Assimilation in Corynebacterium glutamicum. Journal of Biological Chemistry 281, 10778-10785.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[80]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune, I., Werner, H., Hüser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2006). The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genomics 7:21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[79]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599645
Feng, J., Che, Y. S., Milse, J., Yin, Y. J., Liu, L., Ruckert, C., Shen, X. H., Qi, S. W., Kalinowski, J., and Liu, S. J. (2006). The gene ncgl2918 encodes a novel maleylpyruvate isomerase that needs mycothiol as cofactor and links mycothiol biosynthesis and gentisate assimilation in Corynebacterium glutamicum. JOURNAL OF BIOLOGICAL CHEMISTRY 281, 10778-10785.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T. C., Kalinowski, J., Pühler, A., and Tauch, A. (2006). Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae. PROTEOMICS 6, 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier, N., Chao, T. C., Pühler, A., Tauch, A., and Kalinowski, J. (2006). The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032. PROTEOMICS 6, 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598610
Seibold, G., Auchter, M., Berens, S., Kalinowski, J., and Eikmanns, B. J. (2006). Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: Growth and lysine production. JOURNAL OF BIOTECHNOLOGY 124, 381-391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier, N., Albersmeier, A., Tauch, A., Damberg, T., Ros, R., Anselmetti, D., Pühler, A., and Kalinowski, J. (2006). The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032. Microbiology 152, 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597814
Brockmann-Gretza, O., and Kalinowski, J. (2006). Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase. BMC Genomics 7, 230.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895365
Wendisch, V. F., Bott, M., Kalinowski, J., Oldiges, M., and Wiechert, W. (2006). Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology 124, 74-92.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann, S., Lömker, A., Rückert, C., Gaigalat, L., Tauch, A., Pühler, A., and Kalinowski, J. (2006). Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. BMC Genomics 7:205.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[71]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne, M., Tauch, A., Pühler, A., and Kalinowski, J. (2006). The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins. FEMS MICROBIOLOGY LETTERS 259, 226-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598225
Valbuena, N., Letek, M., Ramos, A., Ayala, J., Nakunst, D., Kalinowski, J., Mateos, L. M., and Gil, J. A. (2006). Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of Ftsl. MICROBIOLOGY-SGM 152, 2491-2503.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2906740
Heinz, D., Bott, M., Kalinowski, J., Niefind, K., Rakors, R., and Wendisch, V. F. (2005). “The Transparent Cell” in BIOTECHNOLOGY 2020 – From the Transparent Cell to the Custom-designed Process (European Commision), 8-15.
PUB | Download (ext.)
 
[68]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser, A. T., Chassagnole, C., Lindley, N. D., Merkamm, M., Guyonvarch, A., Elisakova, V., Patek, M., Kalinowski, J., Brune, I., Pühler, A., et al. (2005). Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 3255-3268.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey, D. A., Nentwich, S. S., Koch, D. J., Rückert, C., Pühler, A., Tauch, A., and Kalinowski, J. (2005). The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. MOLECULAR MICROBIOLOGY 56, 871-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert, C., Koch, D. J., Rey, D. A., Albersmeier, A., Mormann, S., Pühler, A., and Kalinowski, J. (2005). Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics 6:121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[65]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch, D. J., Rückert, C., Rey, D. A., Mix, A., Pühler, A., and Kalinowski, J. (2005). Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[64]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch, D. J., Rückert, C., Albersmeier, A., Hüser, A. T., Tauch, A., Pühler, A., and Kalinowski, J. (2005). The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate. Mol Microbiol 58, 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[62]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach, M., Hüser, A. T., Kalinowski, J., Pühler, A., Walter, B., Kramer, R., and Burkovski, A. (2005). DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY 119, 357-367.
PUB | DOI | WoS | PubMed | Europe PMC
 
[61]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune, I., Brinkrolf, K., Kalinowski, J., Pühler, A., and Tauch, A. (2005). The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences. BMC Genomics 6:86.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[60]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach, M., Schafer, M., Hüser, A. T., Kalinowski, J., Pühler, A., Kramer, R., and Burkovski, A. (2005). Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 2391-2402.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602146
Beckers, G., Strosser, J., Hildebrandt, U., Kalinowski, J., Farwick, M., Kramer, R., and Burkovski, A. (2005). Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY 58, 580-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2004 | Sammelwerksbeitrag | PUB-ID: 2906741
Heinz, D., Bott, M., Kalinowski, J., Niefind, K., Takors, R., and Wendisch, V. F. (2004). “Die gläserne Zelle” in BIOTECHNOLOGIE 2020 - Von der gläsernen Zelle zum maßgeschneiderten Prozess (DECHEMA), 6-13.
PUB
 
[57]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster, H., Hohnjec, N., Krajinski, F., El Yahyaoui, F., Manthey, K., Gouzy, J., Dondrup, M., Meyer, F., Kalinowski, J., Brechenmacher, L., et al. (2004). Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula. JOURNAL OF BIOTECHNOLOGY 108, 95-113.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy, A. C., Pühler, A., Kalinowski, J., and Meyer, F. (2004). Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'. PROTEOMICS 4, 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
Hartmann, M., Barsch, A., Niehaus, K., Pühler, A., Tauch, A., and Kalinowski, J. (2004). The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum. ARCHIVES OF MICROBIOLOGY 182, 299-312.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
Tauch, A., Bischoff, N., Pühler, A., and Kalinowski, J. (2004). Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID 52, 102-118.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[53]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Hansmeier, N., Bartels, F. W., Ros, R., Anselmetti, D., Tauch, A., Pühler, A., and Kalinowski, J. (2004). Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol 112, 177-193.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[52]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397
Tauch, A., Bischoff, N., Brune, I., and Kalinowski, J. (2003). Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence. PLASMID 49, 63-74.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[51]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
Rückert, C., Pühler, A., and Kalinowski, J. (2003). Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. JOURNAL OF BIOTECHNOLOGY 104, 213-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
Brand, S., Niehaus, K., Pühler, A., and Kalinowski, J. (2003). Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope. Archives of Microbiology 180, 33-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350
Watt, S. A., Patschkowski, T., Kalinowski, J., and Niehaus, K. (2003). Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT). Journal of Biotechnology 106, 287-300.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
Hartmann, M., Tauch, A., Eggeling, L., Bathe, B., Mockel, B., Pühler, A., and Kalinowski, J. (2003). Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum. J Biotechnol 104, 199-211.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[47]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500
Puehler, F., Schwarz, H., Waidner, B., Kalinowski, J., Kaspers, B., Bereswill, S., and Staeheli, P. (2003). An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus. JOURNAL OF BIOLOGICAL CHEMISTRY 278, 6905-6911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
McHardy, A. C., Tauch, A., Rückert, C., Pühler, A., and Kalinowski, J. (2003). Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum. J Biotechnol 104, 229-240.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[45]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., and Meyer, F. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[43]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey, D. A., Pühler, A., and Kalinowski, J. (2003). The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY 103, 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch, A., Pühler, A., Kalinowski, J., and Thierbach, G. (2003). Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY 104, 27-40.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[41]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
Hüser, A. T., Becker, A., Brune, I., Dondrup, M., Kalinowski, J., Plassmeier, J., Pühler, A., Wiegräbe, I., and Tauch, A. (2003). Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. JOURNAL OF BIOTECHNOLOGY 106, 269-286.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[39]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
Tauch, A., Götker, S., Pühler, A., Kalinowski, J., and Thierbach, G. (2002). The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100. Plasmid 48, 117-129.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[38]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598
Tauch, A., Kirchner, O., Löffler, B., Götker, S., Pühler, A., and Kalinowski, J. (2002). Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. CURRENT MICROBIOLOGY 45, 362-367.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[37]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539
Claes, W. A., Pühler, A., and Kalinowski, J. (2002). Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle. J Bacteriol 184, 2728-2739.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[36]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., and Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18, 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526
Tauch, A., Götker, S., Pühler, A., Kalinowski, J., and Thierbach, G. (2002). The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains. JOURNAL OF BIOTECHNOLOGY 99, 79-91.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[34]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804
Tauch, A., Wehmeier, L., Gotker, S., Pühler, A., and Kalinowski, J. (2001). Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism. FEMS Microbiol Lett 201, 53-58.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[33]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981
Hermann, T., Pfefferle, W., Baumann, C., Busker, E., Schaffer, S., Bott, M., Sahm, H., Dusch, N., Kalinowski, J., Pühler, A., et al. (2001). Proteome analysis of Corynebacterium glutamicum. ELECTROPHORESIS 22, 1712-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[32]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736
Wehmeier, L., Brockmann-Gretza, O., Pisabarro, A., Tauch, A., Pühler, A., Martin, J. F., and Kalinowski, J. (2001). A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvation. Microbiology 147, 691-700.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[31]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384
Tauch, A., Krieft, S., Kalinowski, J., and Pühler, A. (2000). The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens. MOLECULAR AND GENERAL GENETICS 263, 1-11.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[30]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501
Tauch, A., Pühler, A., Kalinowski, J., and Thierbach, G. (2000). TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems. PLASMID 44, 285-291.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[29]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449
Elischewski, F., Pühler, A., and Kalinowski, J. (1999). Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase. JOURNAL OF BIOTECHNOLOGY 75, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329
Tauch, A., Krieft, S., Pühler, A., and Kalinowski, J. (1999). The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum. FEMS Microbiol Lett 173, 203-209.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[27]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284
Dusch, N., Pühler, A., and Kalinowski, J. (1999). Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli. Appl Environ Microbiol 65, 1530-1539.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[26]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156
Quast, K., Bathe, B., Pühler, A., and Kalinowski, J. (1999). The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism. Mol Gen Genet 262, 568-578.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[25]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331
Götting, C., Thierbach, G., Pühler, A., and Kalinowski, J. (1998). Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coli. BIOTECHNIQUES 24, 362-+.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807
Peters-Wendisch, P., Kreutzer, C., Kalinowski, J., Pátek, M., Sahm, H., and Eikmanns, B. J. (1998). Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene. Microbiology-Sgm 144, 915-927.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[23]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721
Tauch, A., Zheng, Z. X., Pühler, A., and Kalinowski, J. (1998). Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicum. Plasmid 40, 126-139.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[22]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135
Wehmeier, L., Schafer, A., Burkovski, A., Kramer, R., Mechold, U., Malke, H., Pühler, A., and Kalinowski, J. (1998). The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolism. Microbiology 144, 1853-1862.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[21]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704
Tauch, A., Hermann, T., Burkovski, A., Kramer, R., Pühler, A., and Kalinowski, J. (1998). Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product. ARCHIVES OF MICROBIOLOGY 169, 303-312.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[20]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635
Schäfer, A., Tauch, A., Droste, N., Pühler, A., and Kalinowski, J. (1997). The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain. Gene 203, 95-101.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[19]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471
Jäger, W., Kalinowski, J., and Pühler, A. (1997). A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli. J Bacteriol 179, 2449-2451.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[18]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976
Fernandez-Gonzalez, C., Gil, J. A., Mateos, L. M., Schwarzer, A., Schafer, A., Kalinowski, J., Pühler, A., and Martin, J. F. (1996). Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genes. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 46, 554-558.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621
Jäger, W., Peters-Wendisch, P., Kalinowski, J., and Pühler, A. (1996). A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins. Arch Microbiol 166, 76-82.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[16]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387
Bathe, B., Kalinowski, J., and Pühler, A. (1996). A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome. MOLECULAR & GENERAL GENETICS 252, 255-265.
PUB | WoS | PubMed | Europe PMC
 
[15]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415
Mateos, L. M., Schäfer, A., Kalinowski, J., Martin, J. F., and Pühler, A. (1996). Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugation. JOURNAL OF BACTERIOLOGY 178, 5768-5775.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658
Jäger, W., Schäfer, A., Kalinowski, J., and Pühler, A. (1995). Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection marker. FEMS MICROBIOLOGY LETTERS 126, 1-6.
PUB | WoS | PubMed | Europe PMC
 
[13]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693
Tauch, A., Kassing, F., Kalinowski, J., and Pühler, A. (1995). The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicum. PLASMID 33, 168-179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972
Tauch, A., KASSING, F., Kalinowski, J., and Pühler, A. (1995). The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX. Plasmid 34, 119-131.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[11]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393
Schäfer, A., Kalinowski, J., and Pühler, A. (1994). Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 60, 756-759.
PUB | WoS | PubMed | Europe PMC
 
[10]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272
Tauch, A., Kirchner, O., Wehmeier, L., Kalinowski, J., and Pühler, A. (1994). Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli. FEMS MICROBIOLOGY LETTERS 123, 343-347.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046
SCHAEFER, A., Tauch, A., JAEGER, W., Kalinowski, J., THIERBACH, G., and Pühler, A. (1994). Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145, 69-73.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[8]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103
Schäfer, A., Schwarzer, A., Kalinowski, J., and Pühler, A. (1994). Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli. J Bacteriol 176, 7309-7319.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[7]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702
Schrumpf, B., Schwarzer, A., Kalinowski, J., Pühler, A., Eggeling, L., and Sahm, H. (1991). A functionally split pathway for lysine synthesis in Corynebacterium glutamicium. Journal of Bacteriology 173, 4510-4516.
PUB | WoS | PubMed | Europe PMC
 
[6]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978
Kalinowski, J., Cremer, J., Bachmann, B., Eggeling, L., Sahm, H., and Pühler, A. (1991). Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum. MOLECULAR MICROBIOLOGY 5, 1197-1204.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[5]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831
Seep-Feldhaus, A. H., Kalinowski, J., and Pühler, A. (1991). Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake. MOLECULAR MICROBIOLOGY 5, 2995-3005.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001
Thierbach, G., Kalinowski, J., Bachmann, B., and Pühler, A. (1990). Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 32, 443-448.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883
Schäfer, A., Kalinowski, J., Simon, R., Seep-Feldhaus, A. H., and Pühler, A. (1990). High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria. JOURNAL OF BACTERIOLOGY 172, 1663-1666.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917
Kalinowski, J., Bachmann, B., Thierbach, G., and Pühler, A. (1990). Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicum. MOLECULAR & GENERAL GENETICS 224, 317-324.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[1]
1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907
PRIEFER, U. B., Kalinowski, J., RUGER, B., HEUMANN, W., and Pühler, A. (1989). ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTS. PLASMID 21, 120-128.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 

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[320]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135
Pucker, B., Rückert, C., Stracke, R., Viehöver, P., Kalinowski, J., and Weisshaar, B. (2019). Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome. Genes 10:671.
PUB | PDF | DOI | PubMed | Europe PMC | EBI - ENA Project
 
[319]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
Rebets, Y., Nadmid, S., Paulus, C., Dahlem, C., Herrmann, J., Huebner, H., Rückert, C., Kiemer, A. K., Gmeiner, P., Kalinowski, J., et al. (2019). Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis. Angewandte Chemie International Edition 58, 12930-12934.
PUB | DOI | WoS | PubMed | Europe PMC
 
[318]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
Grenz, S., Baumann, P. T., Rückert, C., Nebel, B. A., Siebert, D., Schwentner, A., Eikmanns, B. J., Hauer, B., Kalinowski, J., Takors, R., et al. (2019). Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals. Metabolic engineering 55, 220-230.
PUB | DOI | WoS | PubMed | Europe PMC
 
[317]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Sorieul, L., Rückert, C., Al-Dilaimi, A., Winkler, A., Kalinowski, J., Pham, D., Wabete, N., and Boulo, V. (2019). Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia. Microbiology resource announcements 8:e00477-19.
PUB | DOI | PubMed | Europe PMC
 
[316]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922
Graf, M., Haas, T., Mueller, F., Buchmann, A., Harm-Bekbenbetova, J., Freund, A., Niess, A., Persicke, M., Kalinowski, J., Blombach, B., et al. (2019). Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate. Frontiers in Microbiology 10:1648.
PUB | DOI | WoS | PubMed | Europe PMC
 
[315]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
Fritsch, V. N., Loi, V. V., Busche, T., Sommer, A., Tedin, K., Nurnberg, D. J., Kalinowski, J., Bernhardt, J., Fulde, M., and Antelmann, H. (2019). The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>. Antioxidants & redox signaling.
PUB | DOI | WoS | PubMed | Europe PMC
 
[314]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
Lopatniuk, M., Myronovskyi, M., Nottebrock, A., Busche, T., Kalinowski, J., Ostash, B., Fedorenko, V., and Luzhetskyy, A. (2019). Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites. Applied microbiology and biotechnology 103, 7097–7110.
PUB | DOI | WoS | PubMed | Europe PMC
 
[313]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907
Brandt, C., Viehweger, A., Singh, A., Pletz, M. W., Wibberg, D., Kalinowski, J., Lerch, S., Muller, B., and Makarewicz, O. (2019). Assessing genetic diversity and similarity of 435 KPC-carrying plasmids. Scientific reports 9:11223 .
PUB | DOI | WoS | PubMed | Europe PMC
 
[312]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910
Nguyen, T. V., Wibberg, D., Vigil-Stenman, T., Berckx, F., Battenberg, K., Demchenko, K. N., Blom, J., Fernandez, M. P., Yamanaka, T., Berry, A. M., et al. (2019). Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams. Genome biology and evolution 11, 2273–2291.
PUB | DOI | PubMed | Europe PMC
 
[311]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603
Quehenberger, J., Albersmeier, A., Glatzel, H., Hackl, M., Kalinowski, J., and Spadiut, O. (2019). A defined cultivation medium for Sulfolobus acidocaldarius. JOURNAL OF BIOTECHNOLOGY 301, 56-67.
PUB | DOI | WoS | PubMed | Europe PMC
 
[310]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439
Schaffert, L., März, C., Burkhardt, L., Droste, J., Brandt, D., Busche, T., Rosen, W., Schneiker-Bekel, S., Persicke, M., Pühler, A., et al. (2019). Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110. Microbial Cell Factories 18:114.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[309]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
Seeger, B., Mentz, A., Knebel, C., Schmidt, F., Bednarz, H., Niehaus, K., Albaum, S., Kalinowski, J., Noll, T., Steinberg, P., et al. (2019). Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology.
PUB | DOI | PubMed | Europe PMC
 
[308]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr, M., Ferreira, S., Al-Dilaimi, A., Bogeholz, S., Goesmann, A., Kalinowski, J., Knabbe, C., Faber, L., Oliveira, J. P., and Rudolph, V. (2019). Fabry disease: Detection of Alu-mediated exon duplication by NGS. Molecular and cellular probes.
PUB | DOI | WoS | PubMed | Europe PMC
 
[307]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260
Arenas-Lopez, C., Locker, J., Orol, D., Walter, F., Busche, T., Kalinowski, J., Minton, N. P., Kovacs, K., and Winzer, K. (2019). The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16. Biotechnology for biofuels 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[306]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935892
Loi, V. V., Huyen, N. T. T., Busche, T., Tung, Q. N., Gruhlke, M. C. H., Kalinowski, J., Bernhardt, J., Slusarenko, A. J., and Antelmann, H. (2019). Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress. Free radical biology & medicine 139, 55-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
[305]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936033
Tsolis, K. C., Hamed, M. B., Simoens, K., Koepff, J., Busche, T., Rückert, C., Oldiges, M., Kalinowski, J., Anne, J., Kormanec, J., et al. (2019). Secretome Dynamics in a Gram-Positive Bacterial Model. MOLECULAR & CELLULAR PROTEOMICS 18, 423-436.
PUB | DOI | WoS | PubMed | Europe PMC
 
[304]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019
Huennefeld, M., Persicke, M., Kalinowski, J., and Frunzke, J. (2019). The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum. FRONTIERS IN MICROBIOLOGY 10:1039.
PUB | DOI | WoS | PubMed | Europe PMC
 
[303]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936035
Koshla, O. T., Rokytskyy, I. V., Ostash, I. S., Busche, T., Kalinowski, J., Moesker, E., Suessmuth, R. D., Fedorenko, V. O., and Ostash, B. O. (2019). Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2. CYTOLOGY AND GENETICS 53, 1-7.
PUB | DOI | WoS
 
[302]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935870
Haas, T., Graf, M., Niess, A., Busche, T., Kalinowski, J., Blombach, B., and Takors, R. (2019). Identifying the Growth Modulon of Corynebacterium glutamicum. FRONTIERS IN MICROBIOLOGY 10:974.
PUB | DOI | WoS | PubMed | Europe PMC
 
[301]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
Baulig, A., Helmle, I., Bader, M., Wolf, F., Kulik, A., Al-Dilaimi, A., Wibberg, D., Kalinowski, J., Gross, H., and Kaysser, L. (2019). Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase. CHEMICAL SCIENCE 10, 4486-4490.
PUB | DOI | WoS | PubMed | Europe PMC
 
[300]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
Hain, C., Cieslak, C., Mentz, A., Stranzenbach, R., Kalinowski, J., and Stadler, R. (2019). Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke. JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT 17, 1.
PUB | DOI | WoS
 
[299]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273
Gräwe, A., Dreyer, A., Vornholt, T., Barteczko, U., Buchholz, L., Drews, G., Ho, U. L., Jackowski, M. E., Kracht, M., Lüders, J., et al. (2019). A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs. PloS one 14:0210940.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[298]
2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
Braeuning, A., Lichtenstein, D., Mentz, A., Kalinowski, J., Schmidt, F., Poetz, O., and Lampen, A. (2019). “A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro” in NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, vol. 392, (Springer), S76-S77.
PUB | WoS
 
[297]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
Dostalova, H., Busche, T., Holatko, J., Rucka, L., Stepanek, V., Barvik, I., Nesvera, J., Kalinowski, J., and Patek, M. (2019). Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032. FRONTIERS IN MICROBIOLOGY 9:3287.
PUB | DOI | WoS | PubMed | Europe PMC
 
[296]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
Bischof, L. F., Haurat, M. F., Hoffmann, L., Albersmeier, A., Wolf, J., Neu, A., Pham, T. K., Albaum, S., Jakobi, T., Schouten, S., et al. (2019). Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY 9:3201.
PUB | DOI | WoS | PubMed | Europe PMC
 
[295]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348
Jahanshah, G., Miess, H., Busche, T., Rückert, C., Kalinowski, J., Rokni-Zadeh, H., and Gross, H. (2019). Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran. Microbiology resource announcements 8.
PUB | DOI | WoS | PubMed | Europe PMC
 
[294]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693
Humble, E., Dasmahapatra, K. K., Martinez-Barrio, A., Gregório, I., Forcada, J., Polikeit, A. - C., Goldsworthy, S. D., Goebel, M. E., Kalinowski, J., Wolf, J. B. W., et al. (2018). RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding. G3: Genes|Genomes|Genetics 8, 2709-2722.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[293]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735
Wagner, M., Shen, L., Albersmeier, A., van der Kolk, N., Kim, S., Cha, J., Brasen, C., Kalinowski, J., Siebers, B., and Albers, S. - V. (2018). Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84:19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[292]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026
Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., and Pucker, B. (2018). High Quality de Novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences 5:62.
PUB | PDF | DOI | Download (ext.)
 
[291]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296
Wittchen, M., Busche, T., Gaspar, A. H., Lee, J. H., Ton-That, H., Kalinowski, J., and Tauch, A. (2018). Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation. BMC Genomics 19:82.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[290]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984
Neubauer, P., Widmann, C., Wibberg, D., Schröder, L., Frese, M., Kottke, T., Kalinowski, J., Niemann, H., and Sewald, N. (2018). A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination. PLOS ONE 13:e0196797.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[289]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943
Blifernez-Klassen, O., Chaudhari, S., Klassen, V., Wördenweber, R., Steffens, T., Cholewa, D., Niehaus, K., Kalinowski, J., and Kruse, O. (2018). Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation. PLOS ONE 13:23.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[288]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969
Busche, T., Novakova, R., Al'Dilaimi, A., Homerova, D., Feckova, L., Rezuchova, B., Mingyar, E., Csolleiova, D., Bekeova, C., Winkler, A., et al. (2018). Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin. Genome Announcements 6:e00103-18.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[287]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider, O., Simic, N., Aachmann, F. L., Rückert, C., Kristiansen, K. A., Kalinowski, J., Jiang, Y., Wang, L., Jiang, C. - L., Lale, R., et al. (2018). Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic. FRONTIERS IN MICROBIOLOGY 9:3139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[286]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
Van Loi, V., Busche, T., Preuss, T., Kalinowski, J., Bernhardt, J., and Antelmann, H. (2018). The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus. FRONTIERS IN MICROBIOLOGY 9:3037.
PUB | DOI | WoS | PubMed | Europe PMC
 
[285]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Bracharz, F., Helmdach, D., Aschenbrenner, I., Funck, N., Wibberg, D., Winkler, A., Bohnen, F., Kalinowski, J., Mehlmer, N., and Brueck, T. B. (2018). Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6:200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[284]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986
Schmidt, F. F., Steinhilber, A. E., Hammer, H. S., Mentz, A., Kalinowski, J., Lichtenstein, D., Braeuning, A., Marx-Stoelting, P., Lampen, A., Joos, T., et al. (2018). Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays. TOXICOLOGY LETTERS 295, S87.
PUB | DOI | WoS
 
[283]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021
Jiao, J., Paterson, J., Busche, T., Rückert, C., Kalinowski, J., Harwani, D., and Grosso, H. (2018). Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial Activity. MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6:UNSP e00108-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[282]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296
Whitford, C. M., Dymek, S., Kerkhoff, D., März, C., Schmidt, O., Edich, M., Droste, J., Pucker, B., Rückert, C., and Kalinowski, J. (2018). Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications. Journal of Biological Engineering 12:13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[281]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806
Yuecel, O., Wibberg, D., Philipp, B., and Kalinowski, J. (2018). Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism. MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6:UNSP e01372-17.
PUB | DOI | WoS
 
[280]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679
Busche, T., Tsolis, K. C., Koepff, J., Rebets, Y., Rückert, C., Hamed, M. B., Bleidt, A., Wiechert, W., Lopatniuk, M., Yousra, A., et al. (2018). Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion. FRONTIERS IN MICROBIOLOGY 9:12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[279]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
Schneider, O., Ilic-Tomic, T., Rückert, C., Kalinowski, J., Gencic, M. S., Zivkovic, M. Z., Stankovic, N., Radulovic, N. S., Vasiljevic, B., Nikodinovic-Runic, J., et al. (2018). Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY 9:10.
PUB | DOI | WoS | PubMed | Europe PMC
 
[278]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930282
Lange, J., Muench, E., Mueller, J., Busche, T., Kalinowski, J., Takors, R., and Blombach, B. (2018). Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis. GENES 9:297.
PUB | DOI | WoS | PubMed | Europe PMC
 
[277]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133
Ruwe, M., Rückert, C., Kalinowski, J., and Persicke, M. (2018). Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicum. Frontiers in Microbiology 9:916.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[276]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis, J. S., Wibberg, D., Ramírez-Portilla, C., Rupp, O., Sczyrba, A., Winkler, A., Kalinowski, J., and Wilke, T. (2018). Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts. GigaScience 7:giy075.
PUB | DOI | WoS | PubMed | Europe PMC
 
[275]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult, F., Lee, T. N., Albersmeier, A., Rauch, B., Blumenkamp, P., van der Does, C., Goesmann, A., Kalinowski, J., Albers, S. - V., and Siebers, B. (2018). Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response. NUCLEIC ACIDS RESEARCH 46, 7179-7192.
PUB | DOI | WoS | PubMed | Europe PMC
 
[274]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
Paulus, C., Rebets, Y., Zapp, J., Rückert, C., Kalinowski, J., and Luzhetskyy, A. (2018). New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme. FRONTIERS IN MICROBIOLOGY 9:1959.
PUB | DOI | WoS | PubMed | Europe PMC
 
[273]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
Kibret, M., Guerrero-Garzon, J. F., Urban, E., Zehl, M., Wronski, V. - K., Rückert, C., Busche, T., Kalinowski, J., Rollinger, J. M., Abate, D., et al. (2018). Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry. FRONTIERS IN MICROBIOLOGY 9:13.
PUB | DOI | WoS | PubMed | Europe PMC
 
[272]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971
Ganschow, S., Silvery, J., Kalinowski, J., and Tiemann, C. (2018). toaSTR: A web application for forensic STR genotyping by massively parallel sequencing. Forensic Science International: Genetics 37, 21-28.
PUB | DOI | WoS | PubMed | Europe PMC
 
[271]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
Yushchuk, O., Ostash, I., Vlasiuk, I., Gren, T., Luzhetskyy, A., Kalinowski, J., Fedorenko, V., and Ostash, B. (2018). Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102, 8419-8428.
PUB | DOI | WoS | PubMed | Europe PMC
 
[270]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Engel, K., Sauer, J., Jünemann, S., Winkler, A., Wibberg, D., Kalinowski, J., Tauch, A., and Caspers, B. (2018). Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. Microbial Ecology 76, 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
[269]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
Ludwig, P., Sevin, D. C., Busche, T., Kalinowski, J., Bourdeaux, F., Grininger, M., and Mack, M. (2018). Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis. MICROBIOLOGY-SGM 164, 908-919.
PUB | DOI | WoS | PubMed | Europe PMC
 
[268]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
Kranz, A., Busche, T., Vogel, A., Usadel, B., Kalinowski, J., Bott, M., and Polen, T. (2018). RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H. BMC GENOMICS 19:17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[267]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Adamek, M., Alanjary, M., Sales-Ortells, H., Goodfellow, M., Bull, A. T., Winkler, A., Wibberg, D., Kalinowski, J., and Ziemert, N. (2018). Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species. BMC GENOMICS 19:15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[266]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
Zirpel, B., Degenhardt, F., Zammarelli, C., Wibberg, D., Kalinowski, J., Stehle, F., and Kayser, O. (2018). Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification. JOURNAL OF BIOTECHNOLOGY 272, 40-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[265]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
Schwentner, A., Feith, A., Muench, E., Busche, T., Rückert, C., Kalinowski, J., Takors, R., and Blombach, B. (2018). Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum. METABOLIC ENGINEERING 47, 31-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[264]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
Vu, V. L., Busche, T., Tedin, K., Bernhardt, J., Wollenhaupt, J., Huyen, N. T. T., Weise, C., Kalinowski, J., Wahl, M. C., Fulde, M., et al. (2018). Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus. ANTIOXIDANTS & REDOX SIGNALING, 22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[263]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
Hamed, A., Abdel-Razek, A. S., Frese, M., Wibberg, D., El-Haddad, A. F., Ibrahim, T. M. A., Kalinowski, J., Sewald, N., and Shaaban, M. (2018). N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII. ZEITSCHRIFT FÜR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES 73, 49-57.
PUB | DOI | WoS | PubMed | Europe PMC
 
[262]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
Tsolis, K. C., Tsare, E. - P., Orfanoudaki, G., Busche, T., Kanaki, K., Ramakrishnan, R., Rousseau, F., Schymkowitz, J., Rückert, C., Kalinowski, J., et al. (2018). Comprehensive subcellular topologies of polypeptides in Streptomyces. MICROBIAL CELL FACTORIES 17:12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[261]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
Senges, C. H. R., Al-Dilaimi, A., Marchbank, D. H., Wibberg, D., Winkler, A., Haltli, B., Nowrousian, M., Kalinowski, J., Kerr, R. G., and Bandow, J. E. (2018). The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115, 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[260]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
Wolf, F., Leipoldt, F., Kulik, A., Wibberg, D., Kalinowski, J., and Kaysser, L. (2018). Characterization of the Actinonin Biosynthetic Gene Cluster. CHEMBIOCHEM 19, 1189-1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[259]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
Mori, T., Cahn, J. K. B., Wilson, M. C., Meoded, R. A., Wiebach, V., Martinez, A. F. C., Helfrich, E. J. N., Albersmeier, A., Wibberg, D., Datwyler, S., et al. (2018). Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115, 1718-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[258]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674
Landwehr, W., Kaempfer, P., Glaeser, S. P., Rückert, C., Kalinowski, J., Blom, J., Goesmann, A., Mack, M., Schumann, P., Atasayar, E., et al. (2018). Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68, 382-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[257]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367
Baumgart, M., Unthan, S., Kloss, R., Radek, A., Polen, T., Tenhaef, N., Müller, M. F., Küberl, A., Siebert, D., Brühl, N., et al. (2018). Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology. ACS Synthetic Biology 7, 132–144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[256]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
Heine, T., Zimmerling, J., Ballmann, A., Kleeberg, S. B., Rückert, C., Busche, T., Winkler, A., Kalinowski, J., Poetsch, A., Scholtissek, A., et al. (2018). On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84:16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[255]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
Spohn, M., Edenhart, S., Alanjary, M., Ziemert, N., Wibberg, D., Kalinowski, J., Niedermeyer, T. H. J., Stegmann, E., and Wohlleben, W. (2018). Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA). METALLOMICS 10, 722-734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[254]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Koepff, J., Morschett, H., Busche, T., Winkler, A., Kalinowski, J., Wiechert, W., and Oldiges, M. (2018). Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans. BIOTECHNOLOGY PROGRESS 34, 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[253]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403
Hossain, M. S., Persicke, M., ElSayed, A. I., Kalinowski, J., and Dietz, K. - J. (2017). Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet. Journal of Experimental Botany 68, 5961-5976.
PUB | DOI | WoS | PubMed | Europe PMC
 
[252]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913404
Grimm, I., Dumke, J., Vollmer, T., Hinse, D., Rückert, C., Kalinowski, J., Knabbe, C., and Dreier, J. (2017). Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831. Genome Announcements 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[251]
2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
Tokovenko, B., Rückert, C., Kalinowski, J., Mohammadipanah, F., Wink, J., Rosenkränzer, B., Myronovskyi, M., and Luzhetskyy, A. (2017). Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease. Genome Announc 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[250]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Torres Tejerizo, G. A., Wibberg, D., Winkler, A., Ormeño-Orrillo, E., Martínez-Romero, E., Niehaus, K., Pühler, A., Kalinowski, J., Lagares, A., Schlüter, A., et al. (2017). Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T. Genome Announcements 5, e01513-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[249]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916525
Dostalova, H., Holatko, J., Busche, T., Rucka, L., Rapoport, A., Halada, P., Nesvera, J., Kalinowski, J., and Patek, M. (2017). Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum. AMB EXPRESS 7:133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[248]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916447
Schneefeld, M., Busche, T., Geffers, R., Kalinowski, J., and Bange, F. - C. (2017). The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE 12:e0186505.
PUB | DOI | WoS | PubMed | Europe PMC
 
[247]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432
Celis, J. S., Edgell, D. R., Stelbrink, B., Wibberg, D., Hauffe, T., Blom, J., Kalinowski, J., and Wilke, T. (2017). Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia). PLOS ONE 12:e0173734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[246]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913400
Nouioui, I., Rückert, C., Willemse, J., van Wezel, G. P., Klenk, H. - P., Busche, T., Kalinowski, J., Bredholt, H., and Zotchev, S. B. (2017). Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. Antonie Van Leeuwenhoek. Journal of Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[245]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911274
Crnovčić, I., Rückert, C., Semsary, S., Lang, M., Kalinowski, J., and Keller, U. (2017). Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C. Adv Appl Bioinform Chem 10, 29-46.
PUB | DOI | PubMed | Europe PMC
 
[244]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908076
Makarewicz, O., Lucas, M., Brandt, C., Herrmann, L., Albersmeier, A., Rückert, C., Blom, J., Goesmann, A., van der Linden, M., Kalinowski, J., et al. (2017). Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15B. PLoS One 12, e0169370.
PUB | DOI | WoS | PubMed | Europe PMC
 
[243]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272
Hillion, M., Bernhardt, J., Busche, T., Rossius, M., Maaß, S., Becher, D., Rawat, M., Wirtz, M., Hell, R., Rückert, C., et al. (2017). Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress. Sci Rep 7:1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[242]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070
Paulus, C., Rebets, Y., Tokovenko, B., Nadmid, S., Terekhova, L. P., Myronovskyi, M., Zotchev, S. B., Rückert, C., Braig, S., Zahler, S., et al. (2017). New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18. SCIENTIFIC REPORTS 7:42382.
PUB | DOI | WoS | PubMed | Europe PMC
 
[241]
2017 | Datenpublikation | PUB-ID: 2930821
Karsten, L., Bergen, D., Drake, C., Dymek, S., Edich, M., Haak, M., Kerkhoff, D., Kerkhoff, Y., Liebers, M., März, C., et al. (2017). Expanding The Genetic Code. Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[240]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038
Klassen, V., Blifernez-Klassen, O., Wibberg, D., Winkler, A., Kalinowski, J., Posten, C., and Kruse, O. (2017). Highly efficient methane generation from untreated microalgae biomass. Biotechnology for Biofuels 10:186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[239]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
Wolf, T., Droste, J., Gren, T., Ortseifen, V., Schneiker-Bekel, S., Zemke, T., Pühler, A., and Kalinowski, J. (2017). The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110. BMC Genomics 18:562.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[238]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668
Friehs, K., Schwarzhans, J. P., Luttermann, T., Wibberg, D., Winkler, A., Hübner, W., Huser, T., and Kalinowski, J. (2017). A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production. Frontiers in Microbiology 8:780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[237]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386
Jaeger, D., Winkler, A., Mussgnug, J. H., Kalinowski, J., Goesmann, A., and Kruse, O. (2017). Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation. Biotechnology for Biofuels 10:197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[236]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913963
Ruwe, M., Kalinowski, J., and Persicke, M. (2017). Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicum. Frontiers in Microbiology 8:1601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[235]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662
Fernandes de Brito, L., Irla, M., Kalinowski, J., and Wendisch, V. F. (2017). Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology. BMC Genomics 18:846.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[234]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912419
Taniguchi, H., Busche, T., Patschkowski, T., Niehaus, K., Patek, M., Kalinowski, J., and Wendisch, V. F. (2017). Physiological roles of sigma factor SigD in Corynebacterium glutamicum. BMC Microbiology 17:158.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[233]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110
Kulis-Horn, R., Rückert, C., Kalinowski, J., and Persicke, M. (2017). Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond. BMC Microbiology 17:161.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[232]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912983
Boehm, K., Meyer, F., Rhomberg, A., Kalinowski, J., Donovan, C., and Bramkamp, M. (2017). Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with Diploidy. MBIO 8:e00511-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[231]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
Wolf, T., Schneiker-Bekel, S., Neshat, A., Ortseifen, V., Wibberg, D., Zemke, T., Pühler, A., and Kalinowski, J. (2017). Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis. JOURNAL OF BIOTECHNOLOGY 251, 112-123.
PUB | DOI | WoS | PubMed | Europe PMC
 
[230]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916533
Sun, Y. - Q., Busche, T., Rückert, C., Paulus, C., Rebets, Y., Novakova, R., Kalinowski, J., Luzhetskyy, A., Kormanec, J., Sekurova, O. N., et al. (2017). Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites. ACS SYNTHETIC BIOLOGY 6, 1026-1033.
PUB | DOI | WoS | PubMed | Europe PMC
 
[229]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017
Kracht, O. N., Ammann, A. - C., Stockmann, J., Wibberg, D., Kalinowski, J., Piotrowski, M., Kerr, R., Brueck, T., and Kourist, R. (2017). Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY 136, 15-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[228]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912973
Stark, H., Wolf, J., Albersmeier, A., Pham, T. K., Hofmann, J. D., Siebers, B., Kalinowski, J., Wright, P. C., Neumann-Schaal, M., and Schomburg, D. (2017). Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus. FEBS JOURNAL 284, 2078-2095.
PUB | DOI | WoS | PubMed | Europe PMC
 
[227]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911994
Wolf, F., Bauer, J. S., Bendel, T. M., Kulik, A., Kalinowski, J., Gross, H., and Kaysser, L. (2017). Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and Cystargolide. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56, 6665-6668.
PUB | DOI | WoS | PubMed | Europe PMC
 
[226]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911273
Koepff, J., Keller, M., Tsolis, C. K., Busche, T., Rückert, C., Hamed, M. B., Anné, J., Kalinowski, J., Wiechert, W., Economou, A., et al. (2017). Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation. Biotechnol Bioeng 114, 2011-2022.
PUB | DOI | WoS | PubMed | Europe PMC
 
[225]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380
Hamed, A., Abdel-Razek, A. S., Frese, M., Wibberg, D., El-Haddad, A. F., Ibrahim, T. M. A., Kalinowski, J., Sewald, N., and Shaaban, M. (2017). New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4. Zeitschrift für Naturforschung B 72, 53-62.
PUB | DOI | WoS
 
[224]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916444
Schwarzhans, J. P., Luttermann, T., Geier, M., Kalinowski, J., and Friehs, K. (2017). Towards systems metabolic engineering in Pichia pastoris. BIOTECHNOLOGY ADVANCES 35, 681-710.
PUB | DOI | WoS | PubMed | Europe PMC
 
[223]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Kalinowski, J., Ahrens, B., Al-Dilaimi, A., Winkler, A., Wibberg, D., Schleenbecker, U., Rückert, C., Wölfel, R., and Grass, G. (2017). Isolation and whole genome analysis of endospore-forming bacteria from heroin. Forensic Sci Int Genet 32, 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[222]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
Ortseifen, V., Kalinowski, J., Pühler, A., and Rückert, C. (2017). The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose. J Biotechnol 262, 84-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[221]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Jahn, L., Schafhauser, T., Wibberg, D., Rückert, C., Winkler, A., Kulik, A., Weber, T., Flor, L., van Pée, K. - H., Kalinowski, J., et al. (2017). Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin. Journal of Biotechnology 257, 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[220]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918206
Kämpfer, P., Rückert, C., Blom, J., Goesmann, A., Wink, J., Kalinowski, J., and Glaeser, S. P. (2017). Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953. International Journal of Systematic and Evolutionary Microbiology 68, 42-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[219]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916527
Rieke, S., Heise, T., Schmidt, F., Haider, W., Bednarz, H., Niehaus, K., Mentz, A., Kalinowski, J., Hirsch-Ernst, K. I., Steinberg, P., et al. (2017). Mixture effects of azole fungicides on the adrenal gland in a broad dose range. TOXICOLOGY 385, 28-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[218]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913401
Kämpfer, P., Rückert, C., Blom, J., Goesmann, A., Wink, J., Kalinowski, J., and Glaeser, S. P. (2017). Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms. International Journal of Systematic and Evolutionary Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[217]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913406
Albersmeier, A., Pfeifer-Sancar, K., Rückert, C., and Kalinowski, J. (2017). Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum. Journal of Biotechnology 257, 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[216]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., and Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements 4:e00524-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[215]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Busche, T., Winkler, A., Wedderhoff, I., Rückert, C., Kalinowski, J., and Lucana, D. O. de O. (2016). Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes. PLOS ONE 11:e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[214]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685
Schaffert, L., Albersmeier, A., Winkler, A., Kalinowski, J., Zotchev, S. B., and Rückert, C. (2016). Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge. Standards in Genomic Sciences 11:91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[213]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904989
Shah, A., Schielzeth, H., Albersmeier, A., Kalinowski, J., and Hoffman, J. (2016). High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome. Ecology and Evolution 16, 5718-5727.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[212]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Schwarzhans, J. P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J., and Friehs, K. (2016). Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing. Scientific Reports 6:38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[211]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Schwarzhans, J. P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J., and Friehs, K. (2016). Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization. Microbial Cell Factories 15:84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[210]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143
Wibberg, D., Al-Dilaimi, A., Busche, T., Wedderhoff, I., Schrempf, H., Kalinowski, J., and Lucana, D. O. de O. (2016). Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose. JOURNAL OF BIOTECHNOLOGY 222, 13-14.
PUB | DOI | WoS | PubMed | Europe PMC
 
[209]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., Persicke, M., Pühler, A., and Kalinowski, J. (2016). Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors. Journal of Biotechnology 232, 79-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[208]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907748
Jagmann, N., Bleicher, V., Busche, T., Kalinowski, J., and Philipp, B. (2016). The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila. ENVIRONMENTAL MICROBIOLOGY 18, 3550-3564.
PUB | DOI | WoS | PubMed | Europe PMC
 
[207]
2016 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907640
Baumgart, M., Unthan, S., Radek, A., Herbst, M., Siebert, D., Brühl, N., Bartsch, A., Bott, M., Wiechert, W., Marin, K., et al. (2016). Chassis organism from Corynebacterium glutamicum – Genome reduction as a tool toward improved strains for synthetic biology and industrial biotechnology. New Biotechnology 33:S25.
PUB | DOI | WoS
 
[206]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907722
Wolf, J., Stark, H., Fafenrot, K., Albersmeier, A., Pham, T. K., Mueller, K. B., Meyer, B. H., Hoffmann, L., Shen, L., Albaum, S. P., et al. (2016). A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose. MOLECULAR MICROBIOLOGY 102, 882-908.
PUB | DOI | WoS | PubMed | Europe PMC
 
[205]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis, J. S., Wibberg, D., Winkler, A., Wilke, T., and Kalinowski, J. (2016). Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA 27, 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[204]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
Campos, S. B., Lisboa, B. B., Camargo, F. A. O., Bayer, C., Sczyrba, A., Dirksen, P., Albersmeier, A., Kalinowski, J., Beneduzi, A., Costa, P. B., et al. (2016). Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems. Soil Biology and Biochemistry 96, 191-197.
PUB | DOI | WoS
 
[203]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947
Zimmermann, J., Rückert, C., Kalinowski, J., and Lipski, A. (2016). Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk. Int J Syst Evol Microbiol 66, 5288-5293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[202]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905959
Horbal, L., Ostash, B., Luzhetskyy, A., Walker, S., Kalinowski, J., and Fedorenko, V. (2016). A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 100, 7629-7638.
PUB | DOI | WoS | PubMed | Europe PMC
 
[201]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf, T., Gren, T., Thieme, E., Wibberg, D., Zemke, T., Pühler, A., and Kalinowski, J. (2016). Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System. Journal of Biotechnology 231, 122-128.
PUB | DOI | WoS | PubMed | Europe PMC
 
[200]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter, F., Grenz, S., Ortseifen, V., Persicke, M., and Kalinowski, J. (2016). Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity. Journal of Biotechnology 232, 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[199]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Moghadam, M. S., Albersmeier, A., Winkler, A., Cimmino, L., Rise, K., Hohmann-Marriott, M. F., Kalinowski, J., Rückert, C., Wentzel, A., and Lale, R. (2016). Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics 17, 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[198]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Wolf, T., Zemke, T., Wehmeier, U. F., Hecker, M., et al. (2016). Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters. Journal of Proteomics 131, 140-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[197]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905633
Manderscheid, N., Bilyk, B., Busche, T., Kalinowski, J., Paululat, T., Bechthold, A., Petzke, L., and Luzhetskyy, A. (2016). An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous host. JOURNAL OF BIOTECHNOLOGY 232, 110-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[196]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen, T. V., Wibberg, D., Battenberg, K., Blom, J., Vanden Heuvel, B., Berry, A. M., Kalinowski, J., and Pawlowski, K. (2016). An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH. BMC Genomics 17:796.
PUB | DOI | WoS | PubMed | Europe PMC
 
[195]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2723776
Heravi, K. M., Lange, J., Watzlawick, H., Kalinowski, J., and Altenbuchner, J. (2015). Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor. Journal of Bacteriology 197, 959-972.
PUB | DOI | WoS | PubMed | Europe PMC
 
[194]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901251
Leipoldt, F., Zeyhle, P., Kulik, A., Kalinowski, J., Heide, L., and Kaysser, L. (2015). Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid Compounds. Plos One 10:e0143237.
PUB | DOI | WoS | PubMed | Europe PMC
 
[193]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758666
Muller, C., Cacaci, M., Sauvageot, N., Sanguinetti, M., Rattei, T., Eder, T., Giard, J. - C., Kalinowski, J., Hain, T., and Hartke, A. (2015). The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice. PLoS ONE 10:e0126143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[192]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., and Hoffman, J. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics 16:1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[191]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868
Persicke, M., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., and Rückert, C. (2015). Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T. Standards in Genomic Sciences 10:5.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[190]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344
Irla, M., Neshat, A., Brautaset, T., Rückert, C., Kalinowski, J., and Wendisch, V. F. (2015). Transcriptome analysis of thermophilic methylotrophic *Bacillus methanolicus* MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape. BMC Genomics 16:73.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[189]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764291
Ostash, B., Yushchuk, O., Tistechok, S., Mutenko, H., Horbal, L., Muryn, A., Dacyuk, Y., Kalinowski, J., Luzhetskyy, A., and Fedorenko, V. (2015). The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expression. World Journal of Microbiology and Biotechnology 31, 1297-1301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[188]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746
Rückert, C., Leipoldt, F., Zeyhle, P., Fenical, W., Jensen, P. R., Kalinowski, J., Heide, L., and Kaysser, L. (2015). Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry. Journal of Biotechnology 216, 140-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
[187]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555
Müller, C., Birmes, F. S., Rückert, C., Kalinowski, J., and Fetzner, S. (2015). Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuation. Applied and Environmental Microbiology 81, 7720-7729.
PUB | DOI | WoS | PubMed | Europe PMC
 
[186]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Rückert, C., Birmes, F. S., Müller, C., Niewerth, H., Winkler, A., Fetzner, S., and Kalinowski, J. (2015). Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules. Journal of biotechnology 211, 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[185]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434
Oelschlägel, M., Rückert, C., Kalinowski, J., Schmidt, G., Schlömann, M., and Tischler, D. (2015). Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid. International journal of systematic and evolutionary microbiology 65, 3008-3015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[184]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160
Kurosawa, K., Plassmeier, J., Kalinowski, J., Rückert, C., and Sinskey, A. J. (2015). Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production. Metabolic engineering 30, 89-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[183]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771
Unthan, S., Baumgart, M., Radek, A., Herbst, M., Siebert, D., Brühl, N., Bartsch, A., Bott, M., Wiechert, W., Marin, K., et al. (2015). Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clusters. Biotechnology Journal 10, 290-301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[182]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, V., Winkler, A., Albersmeier, A., Wendler, S., Pühler, A., Kalinowski, J., and Rückert, C. (2015). Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid. Journal of Biotechnology 194, 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[181]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700185
Al-Dilaimi, A., Bednarz, H., Lömker, A., Niehaus, K., Kalinowski, J., and Rückert, C. (2015). Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied banana. International journal of systematic and evolutionary microbiology 65, 177-182.
PUB | DOI | WoS | PubMed | Europe PMC
 
[180]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler, S., Otto, A., Ortseifen, V., Bonn, F., Neshat, A., Schneiker-Bekel, S., Walter, F., Wolf, T., Zemke, T., Wehmeier, U. F., et al. (2015). Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster. Journal of Proteomics 125, 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[179]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Rückert, C., Albersmeier, A., Busche, T., Jaenicke, S., Winkler, A., Friðjónsson, Ó. H., Hreggviðsson, G. Ó., Lambert, C., Badcock, D., Bernaerts, K., et al. (2015). Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology 199, 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[178]
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2902782
Knebel, C., Marx-Stoelting, P., Pfeil, R., Seeger, B., Steinberg, P., Mentz, A., Bednarz, H., Niehaus, K., Kalinowski, J., Noll, T., et al. (2015). Multi-level omics analysis of combination effects of (tri-)azoles in a set of different cell lines. Toxicology Letters 238, S355.
PUB | DOI | WoS
 
[177]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901032
Mahr, R., Gaetgens, C., Gaetgens, J., Polen, T., Kalinowski, J., and Frunzke, J. (2015). Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum. Metabolic Engineering 32, 184-194.
PUB | DOI | WoS | PubMed | Europe PMC
 
[176]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser, T., Wibberg, D., Rückert, C., Winkler, A., Flor, L., van Pée, K. - H., Fewer, D. P., Sivonen, K., Jahn, L., Ludwig-Müller, J., et al. (2015). Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential. Journal of Biotechnology 211, 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[175]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
Kulis-Horn, R., Persicke, M., and Kalinowski, J. (2015). Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibition. Journal of Biotechnology 206, 26-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[174]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
Fernandes de Brito, L., Bach, E., Kalinowski, J., Rückert, C., Wibberg, D., Passaglia, L., and Wendisch, V. F. (2015). Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium. Journal of Biotechnology 207, 30-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[173]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029
Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE 9, e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[172]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
Rebets, Y., Tokovenko, B., Lushchyk, I., Rückert, C., Zaburannyi, N., Bechthold, A., Kalinowski, J., and Luzhetskyy, A. (2014). Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae. BMC genomics 15, 885.
PUB | DOI | WoS | PubMed | Europe PMC
 
[171]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
Lübke, N. - C., Wolf, T., Braun, R., Rückert, C., and Kalinowski, J. (2014). Vom Schärfesensor zur mikrobiellen Brennstoffzelle. BIOspektrum 20, 468-469.
PUB | DOI
 
[170]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853
Zeyhle, P., Bauer, J. S., Kalinowski, J., Shin-ya, K., Gross, H., and Heide, L. (2014). Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete. PLoS ONE 9.
PUB | DOI | WoS | PubMed | Europe PMC
 
[169]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., and Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9, e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[168]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
Neshat, A., Mentz, A., Rückert, C., and Kalinowski, J. (2014). Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis. Journal of biotechnology 190, 55-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
[167]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., Stadermann, K. B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., and Goesmann, A. (2014). ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30, 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
[166]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., Stoye, J., and Pühler, A. (2014). Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology 190, 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[165]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
Flinspach, K., Rückert, C., Kalinowski, J., Heide, L., and Apel, A. K. (2014). Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin. Genome announcements 2, e01146-13.
PUB | DOI | PubMed | Europe PMC
 
[164]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
Wilson, M. C., Mori, T., Rückert, C., Uria, A. R., Helf, M. J., Takada, K., Gernert, C., Steffens, U. A. E., Heycke, N., Schmitt, S., et al. (2014). An environmental bacterial taxon with a large and distinct metabolic repertoire. Nature 506, 58-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[163]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148
Kulis-Horn, R., Persicke, M., and Kalinowski, J. (2014). Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum. Microbial Biotechnology 7, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC
 
[162]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289
Al-Dilaimi, A., Albersmeier, A., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer. Journal of Biotechnology 189, 70-71.
PUB | DOI | WoS | PubMed | Europe PMC
 
[161]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
Walter, F., Albersmeier, A., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese. Journal of Biotechnology 189, 76-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
[160]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656728
Chi, B. K., Busche, T., Van Laer, K., Baesell, K., Becher, D., Clermont, L., Seibold, G. M., Persicke, M., Kalinowski, J., Messens, J., et al. (2014). Protein S-Mycothiolation Functions as Redox-Switch and Thiol Protection Mechanism in Corynebacterium glutamicum Under Hypochlorite Stress. Antioxidants & Redox Signaling 20, 589-605.
PUB | DOI | WoS | PubMed | Europe PMC
 
[159]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Irla, M., Neshat, A., Winkler, A., Albersmeier, A., Heggeset, T. M., Brautaset, T., Kalinowski, J., Wendisch, V. F., and Rückert, C. (2014). Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph. Journal of Biotechnology 188, 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707667
Zeyhle, P., Bauer, J. S., Steimle, M., Leipoldt, F., Roesch, M., Kalinowski, J., Gross, H., and Heide, L. (2014). A Membrane-Bound Prenyltransferase Catalyzes the O-Prenylation of 1,6-Dihydroxyphenazine in the Marine Bacterium Streptomyces sp CNQ-509. ChemBioChem 15, 2385-2392.
PUB | DOI | WoS | PubMed | Europe PMC
 
[157]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986
Rückert, C., Kalinowski, J., Heide, L., and Apel, A. K. (2014). Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin. Genome announcements 2, e01147-13.
PUB | DOI | PubMed | Europe PMC
 
[156]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806
Busche, T., Pfeifer-Sancar, K., Rückert, C., and Kalinowski, J. (2014). Identifizierung von Promotoren in Corynebacterium glutamicum. BIOspektrum 20, 284-287.
PUB | DOI
 
[155]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., Biener, R., Schwartz, D., and Kalinowski, J. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689749
Milse, J., Petri, K., Rückert, C., and Kalinowski, J. (2014). Transcriptional response of Corynebacterium glutamicum ATCC 13032 to hydrogen peroxide stress and characterization of the OxyR regulon. Journal of Biotechnology 190, 40-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662843
Myronovskyi, M., Tokovenko, B., Brötz, E., Rückert, C., Kalinowski, J., and Luzhetskyy, A. (2014). Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activation. Applied microbiology and biotechnology 98, 795-806.
PUB | DOI | WoS | PubMed | Europe PMC
 
[152]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693535
Stegmann, E., Albersmeier, A., Spohn, M., Gert, H., Weber, T., Wohlleben, W., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology 189, 46-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler, S., Ortseifen, V., Persicke, M., Klein, A., Neshat, A., Niehaus, K., Schneiker-Bekel, S., Walter, F., Wehmeier, U. F., Kalinowski, J., et al. (2014). Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110. Journal of Biotechnology 191, 113-120.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676082
Ian, E., Malko, D. B., Sekurova, O. N., Bredholt, H., Rückert, C., Borisova, M. E., Albersmeier, A., Kalinowski, J., Gelfand, M. S., and Zotchev, S. B. (2014). Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential. PloS one 9, 96719.
PUB | DOI | WoS | PubMed | Europe PMC
 
[149]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101
Schaffert, L., Albersmeier, A., Bednarz, H., Niehaus, K., Kalinowski, J., and Rückert, C. (2013). Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T). Standards in Genomic Sciences 8, 516-524.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[148]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977
Petri, K., Walter, F., Persicke, M., Rückert, C., and Kalinowski, J. (2013). A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum. BMC Genomics 14:713.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[147]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
Mentz, A., Neshat, A., Pfeifer-Sancar, K., Pühler, A., Rückert, C., and Kalinowski, J. (2013). Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032. BMC Genomics 14, 714.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[146]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373
Pfeifer-Sancar, K., Mentz, A., Rückert, C., and Kalinowski, J. (2013). Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique. BMC Genomics 14, 888.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[145]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler, S., Hürtgen, D., Kalinowski, J., Klein, A., Niehaus, K., Schulte, F., Schwientek, P., Wehlmann, H., Wehmeier, U. F., and Pühler, A. (2013). The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism. Journal of Biotechnology 167, 178-189.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Roetzer, A., Diel, R., Kohl, T. A., Rückert, C., Nübel, U., Blom, J., Wirth, T., Jaenicke, S., Schuback, S., Rüsch-Gerdes, S., et al. (2013). Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine 10, e1001387.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555771
Pátek, M., Holátko, J., Busche, T., Kalinowski, J., and Nešvera, J. (2013). Corynebacterium glutamicum promoters: a practical approach. Microbial Biotechnology 6, 103-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[140]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625606
Klaffl, S., Brocker, M., Kalinowski, J., Eikmanns, B. J., and Bott, M. (2013). Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum. Journal Of Bacteriology 195, 4283-4296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614036
Baumgart, M., Unthan, S., Rückert, C., Sivalingam, J., Grünberger, A., Kalinowski, J., Bott, M., Noack, S., and Frunzke, J. (2013). Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnology. Applied and environmental microbiology 79, 6006-6015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U. F., Kalinowski, J., Stoye, J., and Pühler, A. (2013). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology 167, 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier, J., Busche, T., Molck, S., Persicke, M., Pühler, A., Rückert, C., and Kalinowski, J. (2013). A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways. Journal of Biotechnology 163, 225-232.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Bednarz, H., Niehaus, K., Szczepanowski, R., and Kalinowski, J. (2013). Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T). Standards in Genomic Sciences 9, 505-513.
PUB | DOI | WoS | PubMed | Europe PMC
 
[132]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528277
Busche, T., Silar, R., Picmanova, M., Patek, M., and Kalinowski, J. (2012). Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum. BMC Genomics 13, 445.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[131]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038
Rückert, C., Albersmeier, A., Al-Dilaimi, A., Niehaus, K., Szczepanowski, R., and Kalinowski, J. (2012). Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T). Standards in Genomic Sciences 7, 284-293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
Jankowitsch, F., Schwarz, J., Rückert, C., Gust, B., Szczepanowski, R., Blom, J., Pelzer, S., Kalinowski, J., and Mack, M. (2012). The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. Journal of bacteriology 194, 6818-6827.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530872
Rückert, C., Licht, K., Kalinowski, J., Espírito Santo, C., Antwerpen, M., Hanczaruk, M., Reischl, U., Holzmann, T., Gessner, A., Tiemann, C., et al. (2012). Draft Genome Sequence of Bacillus anthracis UR-1, Isolated from a German Heroin User. Journal of bacteriology 194, 5997-5998.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560259
Heyer, A., Gaetgens, C., Hentschel, E., Kalinowski, J., Bott, M., and Frunzke, J. (2012). The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicum. Microbiology 158, 3020-3031.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548248
Antwerpen, M., Proença, D. N., Rückert, C., Licht, K., Kalinowski, J., Hanczaruk, M., Tiemann, C., and Grass, G. (2012). Draft genome sequence of Bacillus anthracis BF-1, Isolated from Bavarian cattle. Journal of bacteriology 194, 6360-6361.
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2545867
Klenke, C., Janowski, S. J., Borck, D., Widera, D., Ebmeyer, J., Kalinowski, J., Leichtle, A., Hofestädt, R., Upile, T., Kaltschmidt, C., et al. (2012). Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome Microarrays. PLoS One 7, e52718.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2530508
Piel, J., Freeman, M. F., Gurgui, C., Helf, M., Morinaka, B., Wilson, M. C., Mori, T., Rückert, C., Steffens, U., Takada, K., et al. (2012). Chemical surprises from an uncultivated sponge symbiont. Planta Medica 78, 1040-+.
PUB | WoS
 
[124]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486027
Laslo, T., von Zaluskowski, P., Gabris, C., Lodd, E., Rückert, C., Dangel, P., Kalinowski, J., Auchter, M., Seibold, G., and Eikmanns, B. J. (2012). Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlR. Journal of bacteriology 194, 941-955.
PUB | DOI | WoS | PubMed | Europe PMC
 
[123]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., Stoye, J., and Pühler, A. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13:112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[122]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501701
Beckert, P., Hillemann, D., Kohl, T., Kalinowski, J., Richter, E., Niemann, S., and Feuerriegel, S. (2012). rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains. Antimicrobial Agents and Chemotherapy 56, 2743-2745.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., and Neuweger, H. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics 8, 310-322.
PUB | DOI | WoS
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Strobel, T., Al-Dilaimi, A., Blom, J., Gessner, A., Kalinowski, J., Luzhetska, M., Pühler, A., Szczepanowski, R., Bechthold, A., and Rückert, C. (2012). Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae. BMC Genomics 13, 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2520163
Chen, X., Kohl, T. A., Rückert, C., Rodionov, D. A., Li, L. - H., Ding, J. - Y., Kalinowski, J., and Liu, S. - J. (2012). Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicum. Applied and environmental microbiology 78, 5796-5804.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., and Dreier, J. (2011). Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics 12, 400.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke, M., Plassmeier, J., Neuweger, H., Rückert, C., Pühler, A., and Kalinowski, J. (2011). Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites. Journal of Biotechnology 154, 171-178.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier, J., Persicke, M., Pühler, A., Sterthoff, C., Rückert, C., and Kalinowski, J. (2011). Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum. Journal of Biotechnology 159, 1-11.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[115]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2440558
Jankowitsch, F., Kuehm, C., Kellner, R., Kalinowski, J., Pelzer, S., Macheroux, P., and Mack, M. (2011). A Novel N,N-8-Amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) Catalyzing the Two Terminal Steps of Roseoflavin Biosynthesis in Streptomyces davawensis. Journal of Biological Chemistry 286, 38275-38285.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289491
Kalinowski, J. (2011). Regulatory and Metabolic Networks for Amino Acid Production by Corynebacterium glutamicum. Journal of Biotechnology 154, 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., and Dreier, J. (2011). Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis. Clinical Chemistry and Laboratory Medicine 49, S837.
PUB | WoS
 
[112]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., and Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093546
Auchter, M., Laslo, T., Fleischer, C., Schiller, L., Arndt, A., Gaigalat, L., Kalinowski, J., and Eikmanns, B. J. (2011). Control of adhA and sucR expression by the SucR regulator in Corynebacterium glutamicum. Journal of Biotechnology 152, 77-86.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1896635
Auchter, M., Cramer, A., Hüser, A., Rückert, C., Emer, D., Schwarz, P., Arndt, A., Lange, C., Kalinowski, J., Wendisch, V. F., et al. (2011). RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolism. J Biotechnol 154, 126-139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski, J., Rückert, C., Szczepanowski, R., and Pühler, A. (2010). Advanced Genomics and Transcriptomics of Industrial Microorganisms. Chemie Ingenieur Technik 82, 1518-1519.
PUB | DOI
 
[108]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796753
Fraenzel, B., Troetschel, C., Rückert, C., Kalinowski, J., Poetsch, A., and Wolters, D. A. (2010). Adaptation of Corynebacterium glutamicum to salt-stress conditions. PROTEOMICS 10, 445-457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795939
Chao, T. - C., Kalinowski, J., Nyalwidhe, J., and Hansmeier, N. (2010). Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citrate. PROTEOMICS 10, 1673-1684.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968272
Fraenzel, B., Poetsch, A., Troetschel, C., Persicke, M., Kalinowski, J., and Wolters, D. A. (2010). Quantitative proteomic overview on the Corynebacterium glutamicum L-lysine producing strain DM1730. Journal of Proteomics 73, 2336-2353.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., Schneider, J., Kalinowski, J., and Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3:82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[104]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich, S. S., Brinkrolf, K., Gaigalat, L., Hueser, A. T., Rey, D. A., Mohrbach, T., Marin, K., Pühler, A., Tauch, A., and Kalinowski, J. (2009). Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032. MICROBIOLOGY 155, 150-164.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk, J., Kohl, T. A., Goesmann, A., Kalinowski, J., and Baumbach, J. (2009). From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. NUCLEIC ACIDS RESEARCH 37, e97.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588891
Follmann, M., Ochrombel, I., Kraemer, R., Troetschel, C., Poetsch, A., Rückert, C., Hueser, A., Persicke, M., Seiferling, D., Kalinowski, J., et al. (2009). Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis. BMC Genomics 10, 621.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[100]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635517
Barreiro, C., Nakunst, D., Hueser, A. T., de Paz, H. D., Kalinowski, J., and Martin, J. F. (2009). Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum. MICROBIOLOGY-SGM 155, 359-372.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2397428
Rückert, C., and Kalinowski, J. (2008). “Sulfur Metabolism in Corynebacterium glutamicum” in Corynebacteria: Genomics and Molecular Biology, Burkovski, A. ed. (Norfolk, UK: Caister Academic Press), 217-240.
PUB
 
[98]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf, K., Ploeger, S., Solle, S., Brune, I., Nentwich, S. S., Hueser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2008). The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences. MICROBIOLOGY 154, 1068-1081.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
Gkogkoglou, K., Mentz, A., Albersmeier, A., Kalinowski, J., and Giegerich, R. (2008). Looking for non-coding RNAs in Corynebacterium glutamicum. FEBS JOURNAL 275, 153.
PUB | WoS
 
[96]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
Rückert, C., Milse, J., Albersmeier, A., Koch, D. J., Pühler, A., and Kalinowski, J. (2008). The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules. BMC GENOMICS 9, 483.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[95]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., Goesmann, A., Graefen, I., Kalinowski, J., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY 190, 2138-2149.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
PUB
 
[92]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[91]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596355
Walter, B., Haenssler, E., Kalinowski, J., and Burkovski, A. (2007). Nitrogen metabolism and nitrogen control in corynebacteria: Variations of a common theme. JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 12, 131-138.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune, I., Jochmann, N., Brinkrolf, K., Hueser, A. T., Gerstmeir, R., Eikmanns, B. J., Kalinowski, J., Pühler, A., and Tauch, A. (2007). The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum. JOURNAL OF BACTERIOLOGY 189, 2720-2733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier, N., Chao, T. - C., Daschkey, S., Muesken, M., Kalinowski, J., Pühler, A., and Tauch, A. (2007). A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411. PROTEOMICS 7, 1076-1096.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1632884
Haenssler, E., Mueller, T., Jessberger, N., Voelzke, A., Plassmeier, J., Kalinowski, J., Kraemer, R., and Burkovski, A. (2007). FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 76, 625-632.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596102
Larisch, C., Nakunst, D., Hueser, A. T., Tauch, A., and Kalinowski, J. (2007). The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase. BMC Genomics 8:4.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[85]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593292
Plassmeier, J., Barsch, A., Persicke, M., Niehaus, K., and Kalinowski, J. (2007). Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry. Journal of Biotechnology 130, 354-363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst, D., Larisch, C., Hueser, A. T., Tauch, A., Pühler, A., and Kalinowski, J. (2007). The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. JOURNAL OF BACTERIOLOGY 189, 4696-4707.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat, L., Schlüter, J. - P., Hartmann, M., Mormann, S., Tauch, A., Pühler, A., and Kalinowski, J. (2007). The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum. BMC Molecular Biology 8, 104.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[82]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune, I., Becker, A., Paarmann, D., Albersmeier, A., Kalinowski, J., Pühler, A., and Tauch, A. (2006). Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. J Biotechnol 127, 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2006 | Zeitschriftenaufsatz | PUB-ID: 2405187
Feng, J., Che, Y., Milse, J., Yin, Y. - J., Liu, L., Rückert, C., Shen, X. - H., Qi, S. - W., Kalinowski, J., and Liu, S. - J. (2006). The Gene ncgl2918 Encodes a Novel Maleylpyruvate Isomerase That Needs Mycothiol as Cofactor and Links Mycothiol Biosynthesis and Gentisate Assimilation in Corynebacterium glutamicum. Journal of Biological Chemistry 281, 10778-10785.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[80]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune, I., Werner, H., Hüser, A. T., Kalinowski, J., Pühler, A., and Tauch, A. (2006). The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum. BMC Genomics 7:21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[79]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599645
Feng, J., Che, Y. S., Milse, J., Yin, Y. J., Liu, L., Ruckert, C., Shen, X. H., Qi, S. W., Kalinowski, J., and Liu, S. J. (2006). The gene ncgl2918 encodes a novel maleylpyruvate isomerase that needs mycothiol as cofactor and links mycothiol biosynthesis and gentisate assimilation in Corynebacterium glutamicum. JOURNAL OF BIOLOGICAL CHEMISTRY 281, 10778-10785.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier, N., Chao, T. C., Kalinowski, J., Pühler, A., and Tauch, A. (2006). Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae. PROTEOMICS 6, 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier, N., Chao, T. C., Pühler, A., Tauch, A., and Kalinowski, J. (2006). The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032. PROTEOMICS 6, 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598610
Seibold, G., Auchter, M., Berens, S., Kalinowski, J., and Eikmanns, B. J. (2006). Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: Growth and lysine production. JOURNAL OF BIOTECHNOLOGY 124, 381-391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier, N., Albersmeier, A., Tauch, A., Damberg, T., Ros, R., Anselmetti, D., Pühler, A., and Kalinowski, J. (2006). The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032. Microbiology 152, 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597814
Brockmann-Gretza, O., and Kalinowski, J. (2006). Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase. BMC Genomics 7, 230.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895365
Wendisch, V. F., Bott, M., Kalinowski, J., Oldiges, M., and Wiechert, W. (2006). Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology 124, 74-92.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann, S., Lömker, A., Rückert, C., Gaigalat, L., Tauch, A., Pühler, A., and Kalinowski, J. (2006). Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. BMC Genomics 7:205.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[71]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne, M., Tauch, A., Pühler, A., and Kalinowski, J. (2006). The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins. FEMS MICROBIOLOGY LETTERS 259, 226-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598225
Valbuena, N., Letek, M., Ramos, A., Ayala, J., Nakunst, D., Kalinowski, J., Mateos, L. M., and Gil, J. A. (2006). Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of Ftsl. MICROBIOLOGY-SGM 152, 2491-2503.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2906740
Heinz, D., Bott, M., Kalinowski, J., Niefind, K., Rakors, R., and Wendisch, V. F. (2005). “The Transparent Cell” in BIOTECHNOLOGY 2020 – From the Transparent Cell to the Custom-designed Process (European Commision), 8-15.
PUB | Download (ext.)
 
[68]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser, A. T., Chassagnole, C., Lindley, N. D., Merkamm, M., Guyonvarch, A., Elisakova, V., Patek, M., Kalinowski, J., Brune, I., Pühler, A., et al. (2005). Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 3255-3268.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey, D. A., Nentwich, S. S., Koch, D. J., Rückert, C., Pühler, A., Tauch, A., and Kalinowski, J. (2005). The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. MOLECULAR MICROBIOLOGY 56, 871-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert, C., Koch, D. J., Rey, D. A., Albersmeier, A., Mormann, S., Pühler, A., and Kalinowski, J. (2005). Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics 6:121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[65]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch, D. J., Rückert, C., Rey, D. A., Mix, A., Pühler, A., and Kalinowski, J. (2005). Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[64]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch, D. J., Rückert, C., Albersmeier, A., Hüser, A. T., Tauch, A., Pühler, A., and Kalinowski, J. (2005). The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate. Mol Microbiol 58, 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[62]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach, M., Hüser, A. T., Kalinowski, J., Pühler, A., Walter, B., Kramer, R., and Burkovski, A. (2005). DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY 119, 357-367.
PUB | DOI | WoS | PubMed | Europe PMC
 
[61]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune, I., Brinkrolf, K., Kalinowski, J., Pühler, A., and Tauch, A. (2005). The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences. BMC Genomics 6:86.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[60]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach, M., Schafer, M., Hüser, A. T., Kalinowski, J., Pühler, A., Kramer, R., and Burkovski, A. (2005). Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71, 2391-2402.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602146
Beckers, G., Strosser, J., Hildebrandt, U., Kalinowski, J., Farwick, M., Kramer, R., and Burkovski, A. (2005). Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY 58, 580-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2004 | Sammelwerksbeitrag | PUB-ID: 2906741
Heinz, D., Bott, M., Kalinowski, J., Niefind, K., Takors, R., and Wendisch, V. F. (2004). “Die gläserne Zelle” in BIOTECHNOLOGIE 2020 - Von der gläsernen Zelle zum maßgeschneiderten Prozess (DECHEMA), 6-13.
PUB
 
[57]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster, H., Hohnjec, N., Krajinski, F., El Yahyaoui, F., Manthey, K., Gouzy, J., Dondrup, M., Meyer, F., Kalinowski, J., Brechenmacher, L., et al. (2004). Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula. JOURNAL OF BIOTECHNOLOGY 108, 95-113.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy, A. C., Pühler, A., Kalinowski, J., and Meyer, F. (2004). Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'. PROTEOMICS 4, 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
Hartmann, M., Barsch, A., Niehaus, K., Pühler, A., Tauch, A., and Kalinowski, J. (2004). The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum. ARCHIVES OF MICROBIOLOGY 182, 299-312.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
Tauch, A., Bischoff, N., Pühler, A., and Kalinowski, J. (2004). Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID 52, 102-118.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[53]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Hansmeier, N., Bartels, F. W., Ros, R., Anselmetti, D., Tauch, A., Pühler, A., and Kalinowski, J. (2004). Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol 112, 177-193.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[52]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397
Tauch, A., Bischoff, N., Brune, I., and Kalinowski, J. (2003). Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence. PLASMID 49, 63-74.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[51]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
Rückert, C., Pühler, A., and Kalinowski, J. (2003). Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. JOURNAL OF BIOTECHNOLOGY 104, 213-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
Brand, S., Niehaus, K., Pühler, A., and Kalinowski, J. (2003). Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope. Archives of Microbiology 180, 33-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350
Watt, S. A., Patschkowski, T., Kalinowski, J., and Niehaus, K. (2003). Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT). Journal of Biotechnology 106, 287-300.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
Hartmann, M., Tauch, A., Eggeling, L., Bathe, B., Mockel, B., Pühler, A., and Kalinowski, J. (2003). Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum. J Biotechnol 104, 199-211.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[47]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500
Puehler, F., Schwarz, H., Waidner, B., Kalinowski, J., Kaspers, B., Bereswill, S., and Staeheli, P. (2003). An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus. JOURNAL OF BIOLOGICAL CHEMISTRY 278, 6905-6911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
McHardy, A. C., Tauch, A., Rückert, C., Pühler, A., and Kalinowski, J. (2003). Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum. J Biotechnol 104, 229-240.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[45]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., and Meyer, F. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[43]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey, D. A., Pühler, A., and Kalinowski, J. (2003). The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum. JOURNAL OF BIOTECHNOLOGY 103, 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch, A., Pühler, A., Kalinowski, J., and Thierbach, G. (2003). Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY 104, 27-40.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[41]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
Hüser, A. T., Becker, A., Brune, I., Dondrup, M., Kalinowski, J., Plassmeier, J., Pühler, A., Wiegräbe, I., and Tauch, A. (2003). Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. JOURNAL OF BIOTECHNOLOGY 106, 269-286.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[39]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
Tauch, A., Götker, S., Pühler, A., Kalinowski, J., and Thierbach, G. (2002). The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100. Plasmid 48, 117-129.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[38]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598
Tauch, A., Kirchner, O., Löffler, B., Götker, S., Pühler, A., and Kalinowski, J. (2002). Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. CURRENT MICROBIOLOGY 45, 362-367.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[37]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539
Claes, W. A., Pühler, A., and Kalinowski, J. (2002). Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle. J Bacteriol 184, 2728-2739.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[36]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., and Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18, 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526
Tauch, A., Götker, S., Pühler, A., Kalinowski, J., and Thierbach, G. (2002). The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains. JOURNAL OF BIOTECHNOLOGY 99, 79-91.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[34]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804
Tauch, A., Wehmeier, L., Gotker, S., Pühler, A., and Kalinowski, J. (2001). Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism. FEMS Microbiol Lett 201, 53-58.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[33]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981
Hermann, T., Pfefferle, W., Baumann, C., Busker, E., Schaffer, S., Bott, M., Sahm, H., Dusch, N., Kalinowski, J., Pühler, A., et al. (2001). Proteome analysis of Corynebacterium glutamicum. ELECTROPHORESIS 22, 1712-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[32]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736
Wehmeier, L., Brockmann-Gretza, O., Pisabarro, A., Tauch, A., Pühler, A., Martin, J. F., and Kalinowski, J. (2001). A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvation. Microbiology 147, 691-700.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[31]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384
Tauch, A., Krieft, S., Kalinowski, J., and Pühler, A. (2000). The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens. MOLECULAR AND GENERAL GENETICS 263, 1-11.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[30]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501
Tauch, A., Pühler, A., Kalinowski, J., and Thierbach, G. (2000). TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems. PLASMID 44, 285-291.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[29]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449
Elischewski, F., Pühler, A., and Kalinowski, J. (1999). Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase. JOURNAL OF BIOTECHNOLOGY 75, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329
Tauch, A., Krieft, S., Pühler, A., and Kalinowski, J. (1999). The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum. FEMS Microbiol Lett 173, 203-209.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[27]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284
Dusch, N., Pühler, A., and Kalinowski, J. (1999). Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli. Appl Environ Microbiol 65, 1530-1539.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[26]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156
Quast, K., Bathe, B., Pühler, A., and Kalinowski, J. (1999). The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism. Mol Gen Genet 262, 568-578.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[25]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331
Götting, C., Thierbach, G., Pühler, A., and Kalinowski, J. (1998). Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coli. BIOTECHNIQUES 24, 362-+.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807
Peters-Wendisch, P., Kreutzer, C., Kalinowski, J., Pátek, M., Sahm, H., and Eikmanns, B. J. (1998). Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene. Microbiology-Sgm 144, 915-927.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[23]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721
Tauch, A., Zheng, Z. X., Pühler, A., and Kalinowski, J. (1998). Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicum. Plasmid 40, 126-139.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[22]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135
Wehmeier, L., Schafer, A., Burkovski, A., Kramer, R., Mechold, U., Malke, H., Pühler, A., and Kalinowski, J. (1998). The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolism. Microbiology 144, 1853-1862.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[21]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704
Tauch, A., Hermann, T., Burkovski, A., Kramer, R., Pühler, A., and Kalinowski, J. (1998). Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product. ARCHIVES OF MICROBIOLOGY 169, 303-312.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[20]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635
Schäfer, A., Tauch, A., Droste, N., Pühler, A., and Kalinowski, J. (1997). The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain. Gene 203, 95-101.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[19]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471
Jäger, W., Kalinowski, J., and Pühler, A. (1997). A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli. J Bacteriol 179, 2449-2451.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[18]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976
Fernandez-Gonzalez, C., Gil, J. A., Mateos, L. M., Schwarzer, A., Schafer, A., Kalinowski, J., Pühler, A., and Martin, J. F. (1996). Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genes. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 46, 554-558.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621
Jäger, W., Peters-Wendisch, P., Kalinowski, J., and Pühler, A. (1996). A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins. Arch Microbiol 166, 76-82.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[16]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387
Bathe, B., Kalinowski, J., and Pühler, A. (1996). A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome. MOLECULAR & GENERAL GENETICS 252, 255-265.
PUB | WoS | PubMed | Europe PMC
 
[15]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415
Mateos, L. M., Schäfer, A., Kalinowski, J., Martin, J. F., and Pühler, A. (1996). Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugation. JOURNAL OF BACTERIOLOGY 178, 5768-5775.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658
Jäger, W., Schäfer, A., Kalinowski, J., and Pühler, A. (1995). Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection marker. FEMS MICROBIOLOGY LETTERS 126, 1-6.
PUB | WoS | PubMed | Europe PMC
 
[13]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693
Tauch, A., Kassing, F., Kalinowski, J., and Pühler, A. (1995). The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicum. PLASMID 33, 168-179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972
Tauch, A., KASSING, F., Kalinowski, J., and Pühler, A. (1995). The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX. Plasmid 34, 119-131.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[11]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393
Schäfer, A., Kalinowski, J., and Pühler, A. (1994). Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 60, 756-759.
PUB | WoS | PubMed | Europe PMC
 
[10]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272
Tauch, A., Kirchner, O., Wehmeier, L., Kalinowski, J., and Pühler, A. (1994). Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli. FEMS MICROBIOLOGY LETTERS 123, 343-347.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046
SCHAEFER, A., Tauch, A., JAEGER, W., Kalinowski, J., THIERBACH, G., and Pühler, A. (1994). Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145, 69-73.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[8]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103
Schäfer, A., Schwarzer, A., Kalinowski, J., and Pühler, A. (1994). Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli. J Bacteriol 176, 7309-7319.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[7]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702
Schrumpf, B., Schwarzer, A., Kalinowski, J., Pühler, A., Eggeling, L., and Sahm, H. (1991). A functionally split pathway for lysine synthesis in Corynebacterium glutamicium. Journal of Bacteriology 173, 4510-4516.
PUB | WoS | PubMed | Europe PMC
 
[6]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978
Kalinowski, J., Cremer, J., Bachmann, B., Eggeling, L., Sahm, H., and Pühler, A. (1991). Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum. MOLECULAR MICROBIOLOGY 5, 1197-1204.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[5]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831
Seep-Feldhaus, A. H., Kalinowski, J., and Pühler, A. (1991). Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake. MOLECULAR MICROBIOLOGY 5, 2995-3005.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001
Thierbach, G., Kalinowski, J., Bachmann, B., and Pühler, A. (1990). Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 32, 443-448.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883
Schäfer, A., Kalinowski, J., Simon, R., Seep-Feldhaus, A. H., and Pühler, A. (1990). High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria. JOURNAL OF BACTERIOLOGY 172, 1663-1666.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917
Kalinowski, J., Bachmann, B., Thierbach, G., and Pühler, A. (1990). Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicum. MOLECULAR & GENERAL GENETICS 224, 317-324.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[1]
1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907
PRIEFER, U. B., Kalinowski, J., RUGER, B., HEUMANN, W., and Pühler, A. (1989). ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTS. PLASMID 21, 120-128.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 

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