302 Publikationen

Alle markieren

[302]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L (2019)
Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase.
CHEMICAL SCIENCE 10(16): 4486-4490.
PUB | DOI | WoS | PubMed | Europe PMC
 
[301]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr M, Ferreira S, Al-Dilaimi A, Bogeholz S, Goesmann A, Kalinowski J, Knabbe C, Faber L, Oliveira JP, Rudolph V (2019)
Fabry disease: Detection of Alu-mediated exon duplication by NGS.
Molecular and cellular probes.
PUB | DOI | PubMed | Europe PMC
 
[300]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
Hain C, Cieslak C, Mentz A, Stranzenbach R, Kalinowski J, Stadler R (2019)
Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke.
JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT 17(Suppl. 1): 1.
PUB | DOI | WoS
 
[299]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273
Gräwe A, Dreyer A, Vornholt T, Barteczko U, Buchholz L, Drews G, Ho UL, Jackowski ME, Kracht M, Lüders J, Bleckwehl T, Rositzka L, Ruwe M, Wittchen M, Lutter P, Müller K, Kalinowski J (2019)
A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.
PloS one 14(3): 0210940.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[298]
2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
Braeuning A, Lichtenstein D, Mentz A, Kalinowski J, Schmidt F, Poetz O, Lampen A (2019)
A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro.
In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. 392. Springer: S76-S77.
PUB | WoS
 
[297]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
Dostalova H, Busche T, Holatko J, Rucka L, Stepanek V, Barvik I, Nesvera J, Kalinowski J, Patek M (2019)
Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032.
FRONTIERS IN MICROBIOLOGY 9: 3287.
PUB | DOI | WoS | PubMed | Europe PMC
 
[296]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum S, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers S-V (2019)
Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.
FRONTIERS IN MICROBIOLOGY 9: 3201.
PUB | DOI | WoS | PubMed | Europe PMC
 
[295]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348
Jahanshah G, Miess H, Busche T, Rückert C, Kalinowski J, Rokni-Zadeh H, Gross H (2019)
Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran.
Microbiology resource announcements 8(2).
PUB | DOI | WoS | PubMed | Europe PMC
 
[294]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296
Wittchen M, Busche T, Gaspar AH, Lee JH, Ton-That H, Kalinowski J, Tauch A (2018)
Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation.
BMC Genomics 19(1): 82.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[293]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026
Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
High Quality de Novo Transcriptome Assembly of Croton tiglium.
Frontiers in Molecular Biosciences 5: 62.
PUB | PDF | DOI | Download (ext.)
 
[292]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693
Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit A-C, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman J (2018)
RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.
G3: Genes|Genomes|Genetics 8(8): 2709-2722.
PUB | PDF | DOI
 
[291]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984
Neubauer P, Widmann C, Wibberg D, Schröder L, Frese M, Kottke T, Kalinowski J, Niemann H, Sewald N (2018)
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLOS ONE 13(5): e0196797.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[290]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943
Blifernez-Klassen O, Chaudhari S, Klassen V, Wördenweber R, Steffens T, Cholewa D, Niehaus K, Kalinowski J, Kruse O (2018)
Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation.
PLOS ONE 13(6): 23.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[289]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, Kalinowski J, Kormanec J, Rückert C (2018)
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin.
Genome Announcements 6(9): e00103-18.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[288]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider O, Simic N, Aachmann FL, Rückert C, Kristiansen KA, Kalinowski J, Jiang Y, Wang L, Jiang C-L, Lale R, Zotchev SB (2018)
Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic.
FRONTIERS IN MICROBIOLOGY 9: 3139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[287]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
Van Loi V, Busche T, Preuss T, Kalinowski J, Bernhardt J, Antelmann H (2018)
The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus.
FRONTIERS IN MICROBIOLOGY 9: 3037.
PUB | DOI | WoS | PubMed | Europe PMC
 
[286]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[285]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986
Schmidt FF, Steinhilber AE, Hammer HS, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Marx-Stoelting P, Lampen A, Joos T, Poetz O (2018)
Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays.
TOXICOLOGY LETTERS 295(Suppl. 1): S87.
PUB | DOI | WoS
 
[284]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021
Jiao J, Paterson J, Busche T, Rückert C, Kalinowski J, Harwani D, Grosso H (2018)
Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial Activity.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(9): UNSP e00108-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[283]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296
Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.
Journal of Biological Engineering 12: 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[282]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806
Yuecel O, Wibberg D, Philipp B, Kalinowski J (2018)
Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(1): UNSP e01372-17.
PUB | DOI | WoS
 
[281]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679
Busche T, Tsolis KC, Koepff J, Rebets Y, Rückert C, Hamed MB, Bleidt A, Wiechert W, Lopatniuk M, Yousra A, Anne J, Karamanou S, Oldiges M, Kalinowski J, Luzhetskyy A, Economou A (2018)
Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion.
FRONTIERS IN MICROBIOLOGY 9: 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[280]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930282
Lange J, Muench E, Mueller J, Busche T, Kalinowski J, Takors R, Blombach B (2018)
Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis.
GENES 9(6): 297.
PUB | DOI | WoS | PubMed | Europe PMC
 
[279]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
Schneider O, Ilic-Tomic T, Rückert C, Kalinowski J, Gencic MS, Zivkovic MZ, Stankovic N, Radulovic NS, Vasiljevic B, Nikodinovic-Runic J, Zotchev SB (2018)
Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10.
FRONTIERS IN MICROBIOLOGY 9: 10.
PUB | DOI | WoS | PubMed | Europe PMC
 
[278]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts.
GigaScience 7(7): giy075.
PUB | DOI | WoS | PubMed | Europe PMC
 
[277]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133
Ruwe M, Rückert C, Kalinowski J, Persicke M (2018)
Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicum.
Frontiers in Microbiology 9: 916.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[276]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult F, Lee TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers S-V, Siebers B (2018)
Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.
NUCLEIC ACIDS RESEARCH 46(14): 7179-7192.
PUB | DOI | WoS | PubMed | Europe PMC
 
[275]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
Paulus C, Rebets Y, Zapp J, Rückert C, Kalinowski J, Luzhetskyy A (2018)
New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme.
FRONTIERS IN MICROBIOLOGY 9: 1959.
PUB | DOI | WoS | PubMed | Europe PMC
 
[274]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
Kibret M, Guerrero-Garzon JF, Urban E, Zehl M, Wronski V-K, Rückert C, Busche T, Kalinowski J, Rollinger JM, Abate D, Zotchev SB (2018)
Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry.
FRONTIERS IN MICROBIOLOGY 9: 13.
PUB | DOI | WoS | PubMed | Europe PMC
 
[273]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971
Ganschow S, Silvery J, Kalinowski J, Tiemann C (2018)
toaSTR: A web application for forensic STR genotyping by massively parallel sequencing.
Forensic Science International: Genetics 37: 21-28.
PUB | DOI | WoS | PubMed | Europe PMC
 
[272]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
Yushchuk O, Ostash I, Vlasiuk I, Gren T, Luzhetskyy A, Kalinowski J, Fedorenko V, Ostash B (2018)
Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(19): 8419-8428.
PUB | DOI | WoS | PubMed | Europe PMC
 
[271]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing.
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
[270]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
Ludwig P, Sevin DC, Busche T, Kalinowski J, Bourdeaux F, Grininger M, Mack M (2018)
Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis.
MICROBIOLOGY-SGM 164(6): 908-919.
PUB | DOI | WoS | PubMed | Europe PMC
 
[269]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735
Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Brasen C, Kalinowski J, Siebers B, Albers S-V (2018)
Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(3): 19.
PUB | DOI | WoS
 
[268]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
Kranz A, Busche T, Vogel A, Usadel B, Kalinowski J, Bott M, Polen T (2018)
RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H.
BMC GENOMICS 19: 17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[267]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.
BMC GENOMICS 19: 15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[266]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)
Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification.
JOURNAL OF BIOTECHNOLOGY 272: 40-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[265]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
Schwentner A, Feith A, Muench E, Busche T, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum.
METABOLIC ENGINEERING 47: 31-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[264]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
Vu VL, Busche T, Tedin K, Bernhardt J, Wollenhaupt J, Huyen NTT, Weise C, Kalinowski J, Wahl MC, Fulde M, Antelmann H (2018)
Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus.
ANTIOXIDANTS & REDOX SIGNALING: 22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[263]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
Tsolis KC, Tsare E-P, Orfanoudaki G, Busche T, Kanaki K, Ramakrishnan R, Rousseau F, Schymkowitz J, Rückert C, Kalinowski J, Anne J, Karamanou S, Klapa MI, Economou A (2018)
Comprehensive subcellular topologies of polypeptides in Streptomyces.
MICROBIAL CELL FACTORIES 17: 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[262]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[261]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)
N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII.
ZEITSCHRIFT FÜR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES 73(1-2): 49-57.
PUB | DOI | WoS | PubMed | Europe PMC
 
[260]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)
Characterization of the Actinonin Biosynthetic Gene Cluster.
CHEMBIOCHEM 19(11): 1189-1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[259]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, Lavy A, Rückert C, Ilan M, Kalinowski J, Matsunaga S, Takeyama H, Piel J (2018)
Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[258]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674
Landwehr W, Kaempfer P, Glaeser SP, Rückert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, Rohde M, Martin K, Stadler M, Wink J (2018)
Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1): 382-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[257]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367
Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, Hans S, Krämer R, Bott M, Kalinowski J, Wiechert W, Seibold G, Frunzke J, Rückert C, Wendisch VF, Noack S (2018)
Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology.
ACS Synthetic Biology 7: 132–144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[256]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)
Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA).
METALLOMICS 10(5): 722-734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[255]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, Schmidt G, Tischler D (2018)
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[254]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans.
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[253]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916525
Dostalova H, Holatko J, Busche T, Rucka L, Rapoport A, Halada P, Nesvera J, Kalinowski J, Patek M (2017)
Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum.
AMB EXPRESS 7: 133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[252]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916447
Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C (2017)
The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner.
PLOS ONE 12(10): e0186505.
PUB | DOI | WoS | PubMed | Europe PMC
 
[251]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403
Hossain MS, Persicke M, ElSayed AI, Kalinowski J, Dietz K-J (2017)
Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet.
Journal of Experimental Botany 68(21-22): 5961-5976.
PUB | DOI | WoS | PubMed | Europe PMC
 
[250]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432
Celis JS, Edgell DR, Stelbrink B, Wibberg D, Hauffe T, Blom J, Kalinowski J, Wilke T (2017)
Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
PLOS ONE 12(3): e0173734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[249]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913400
Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk H-P, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2017)
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.
Antonie Van Leeuwenhoek. Journal of Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[248]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911274
Crnovčić I, Rückert C, Semsary S, Lang M, Kalinowski J, Keller U (2017)
Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C.
Adv Appl Bioinform Chem 10: 29-46.
PUB | DOI | PubMed | Europe PMC
 
[247]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908076
Makarewicz O, Lucas M, Brandt C, Herrmann L, Albersmeier A, Rückert C, Blom J, Goesmann A, van der Linden M, Kalinowski J, Pletz MW (2017)
Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15B.
PLoS One 12(1): e0169370.
PUB | DOI | WoS | PubMed | Europe PMC
 
[246]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272
Hillion M, Bernhardt J, Busche T, Rossius M, Maaß S, Becher D, Rawat M, Wirtz M, Hell R, Rückert C, Kalinowski J, Antelmann H (2017)
Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress.
Sci Rep 7(1): 1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[245]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070
Paulus C, Rebets Y, Tokovenko B, Nadmid S, Terekhova LP, Myronovskyi M, Zotchev SB, Rückert C, Braig S, Zahler S, Kalinowski J, Luzhetskyy A (2017)
New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18.
SCIENTIFIC REPORTS 7: 42382.
PUB | DOI | WoS | PubMed | Europe PMC
 
[244]
2017 | Datenpublikation | PUB-ID: 2930821
Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, Schmidt O, Vinke S, M. Whitford C, Pucker B, Droste J, Rückert C, M. Müller K, Kalinowski J (2017)
Expanding The Genetic Code.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[243]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Highly efficient methane generation from untreated microalgae biomass.
Biotechnology for Biofuels 10: 186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[242]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
Wolf T, Droste J, Gren T, Ortseifen V, Schneiker-Bekel S, Zemke T, Pühler A, Kalinowski J (2017)
The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110.
BMC Genomics 18: 562.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[241]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production.
Frontiers in Microbiology 8: 780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[240]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation.
Biotechnology for Biofuels 10: 197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[239]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913963
Ruwe M, Kalinowski J, Persicke M (2017)
Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicum.
Frontiers in Microbiology 8: 1601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[238]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI
 
[237]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662
Fernandes de Brito L, Irla M, Kalinowski J, Wendisch VF (2017)
Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology.
BMC Genomics 18: 846.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[236]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912419
Taniguchi H, Busche T, Patschkowski T, Niehaus K, Patek M, Kalinowski J, Wendisch VF (2017)
Physiological roles of sigma factor SigD in Corynebacterium glutamicum.
BMC Microbiology 17: 158.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[235]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110
Kulis-Horn R, Rückert C, Kalinowski J, Persicke M (2017)
Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond.
BMC Microbiology 17(1): 161.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[234]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912983
Boehm K, Meyer F, Rhomberg A, Kalinowski J, Donovan C, Bramkamp M (2017)
Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with Diploidy.
MBIO 8(3): e00511-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[233]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
Wolf T, Schneiker-Bekel S, Neshat A, Ortseifen V, Wibberg D, Zemke T, Pühler A, Kalinowski J (2017)
Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis.
JOURNAL OF BIOTECHNOLOGY 251: 112-123.
PUB | DOI | WoS | PubMed | Europe PMC
 
[232]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916533
Sun Y-Q, Busche T, Rückert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB (2017)
Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites.
ACS SYNTHETIC BIOLOGY 6(6): 1026-1033.
PUB | DOI | WoS | PubMed | Europe PMC
 
[231]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017
Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)
Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases.
PHYTOCHEMISTRY 136: 15-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[230]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912973
Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D (2017)
Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.
FEBS JOURNAL 284(13): 2078-2095.
PUB | DOI | WoS | PubMed | Europe PMC
 
[229]
2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
Tokovenko B, Rückert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkränzer B, Myronovskyi M, Luzhetskyy A (2017)
Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease.
Genome Announc 5(20).
PUB | DOI | PubMed | Europe PMC
 
[228]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911994
Wolf F, Bauer JS, Bendel TM, Kulik A, Kalinowski J, Gross H, Kaysser L (2017)
Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and Cystargolide.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56(23): 6665-6668.
PUB | DOI | WoS | PubMed | Europe PMC
 
[227]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911273
Koepff J, Keller M, Tsolis CK, Busche T, Rückert C, Hamed MB, Anné J, Kalinowski J, Wiechert W, Economou A, Oldiges M (2017)
Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation.
Biotechnol Bioeng 114(9): 2011-2022.
PUB | DOI | WoS | PubMed | Europe PMC
 
[226]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2017)
New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4.
Zeitschrift für Naturforschung B 72(1): 53-62.
PUB | DOI | WoS
 
[225]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916444
Schwarzhans JP, Luttermann T, Geier M, Kalinowski J, Friehs K (2017)
Towards systems metabolic engineering in Pichia pastoris.
BIOTECHNOLOGY ADVANCES 35(6): 681-710.
PUB | DOI | WoS | PubMed | Europe PMC
 
[224]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[223]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913404
Grimm I, Dumke J, Vollmer T, Hinse D, Rückert C, Kalinowski J, Knabbe C, Dreier J (2017)
Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831.
Genome Announcements 5(16).
PUB | DOI | PubMed | Europe PMC
 
[222]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
Ortseifen V, Kalinowski J, Pühler A, Rückert C (2017)
The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose.
J Biotechnol 262: 84-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[221]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, Wohlleben W (2017)
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[220]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918206
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953.
International Journal of Systematic and Evolutionary Microbiology 68(1): 42-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[219]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916527
Rieke S, Heise T, Schmidt F, Haider W, Bednarz H, Niehaus K, Mentz A, Kalinowski J, Hirsch-Ernst KI, Steinberg P, Niemann L, Marx-Stoelting P (2017)
Mixture effects of azole fungicides on the adrenal gland in a broad dose range.
TOXICOLOGY 385: 28-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[218]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913401
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms.
International Journal of Systematic and Evolutionary Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[217]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913406
Albersmeier A, Pfeifer-Sancar K, Rückert C, Kalinowski J (2017)
Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.
Journal of Biotechnology 257: 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[216]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes.
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[215]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904989
Shah A, Schielzeth H, Albersmeier A, Kalinowski J, Hoffman J (2016)
High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.
Ecology and Evolution 16(6): 5718-5727.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[214]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge.
Standards in Genomic Sciences 11: 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[213]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing.
Scientific Reports 6: 38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[212]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization.
Microbial Cell Factories 15: 84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[211]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa).
Genome Announcements 4(3): e00524-16.
PUB | PDF | DOI
 
[210]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143
Wibberg D, Al-Dilaimi A, Busche T, Wedderhoff I, Schrempf H, Kalinowski J, Lucana DO de O (2016)
Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose.
JOURNAL OF BIOTECHNOLOGY 222: 13-14.
PUB | DOI | WoS | PubMed | Europe PMC
 
[209]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)
Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors.
Journal of Biotechnology 232: 79-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[208]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907748
Jagmann N, Bleicher V, Busche T, Kalinowski J, Philipp B (2016)
The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila.
ENVIRONMENTAL MICROBIOLOGY 18(10): 3550-3564.
PUB | DOI | WoS | PubMed | Europe PMC
 
[207]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907722
Wolf J, Stark H, Fafenrot K, Albersmeier A, Pham TK, Mueller KB, Meyer BH, Hoffmann L, Shen L, Albaum SP, Kouril T, Schmidt-Hohagen K, Neumann-Schaal M, Braesen C, Kalinowski J, Wright PC, Albers S-V, Schomburg D, Siebers B (2016)
A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.
MOLECULAR MICROBIOLOGY 102(5): 882-908.
PUB | DOI | WoS | PubMed | Europe PMC
 
[206]
2016 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907640
Baumgart M, Unthan S, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Kalinowski J, Rückert C, Wendisch VF, Noack S, Frunzke J (2016)
Chassis organism from Corynebacterium glutamicum – Genome reduction as a tool toward improved strains for synthetic biology and industrial biotechnology.
New Biotechnology 33: S25.
PUB | DOI | WoS
 
[205]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Complete mitochondrial genome of the scleractinian coral Porites rus.
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[204]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, Vargas LK, Wendisch VF (2016)
Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems.
Soil Biology and Biochemistry 96: 191-197.
PUB | DOI | WoS
 
[203]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947
Zimmermann J, Rückert C, Kalinowski J, Lipski A (2016)
Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk.
Int J Syst Evol Microbiol 66: 5288-5293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[202]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905959
Horbal L, Ostash B, Luzhetskyy A, Walker S, Kalinowski J, Fedorenko V (2016)
A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 100(17): 7629-7638.
PUB | DOI | WoS | PubMed | Europe PMC
 
[201]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)
Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System.
Journal of Biotechnology 231: 122-128.
PUB | DOI | WoS | PubMed | Europe PMC
 
[200]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter F, Grenz S, Ortseifen V, Persicke M, Kalinowski J (2016)
Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity.
Journal of Biotechnology 232: 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[199]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
BMC Genomics 17(1): 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[198]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A (2016)
Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters.
Journal of Proteomics 131: 140-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[197]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905633
Manderscheid N, Bilyk B, Busche T, Kalinowski J, Paululat T, Bechthold A, Petzke L, Luzhetskyy A (2016)
An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous host.
JOURNAL OF BIOTECHNOLOGY 232: 110-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[196]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
BMC Genomics 17: 796.
PUB | DOI | WoS | PubMed | Europe PMC
 
[195]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901251
Leipoldt F, Zeyhle P, Kulik A, Kalinowski J, Heide L, Kaysser L (2015)
Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid Compounds.
Plos One 10(12): e0143237.
PUB | DOI | WoS | PubMed | Europe PMC
 
[194]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758666
Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T, Giard J-C, Kalinowski J, Hain T, Hartke A (2015)
The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice.
PLoS ONE 10(5): e0126143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[193]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)
De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.
BMC Genomics 16: 1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[192]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868
Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2015)
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T.
Standards in Genomic Sciences 10: 5.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[191]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344
Irla M, Neshat A, Brautaset T, Rückert C, Kalinowski J, Wendisch VF (2015)
Transcriptome analysis of thermophilic methylotrophic *Bacillus methanolicus* MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape.
BMC Genomics 16: 73.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[190]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764291
Ostash B, Yushchuk O, Tistechok S, Mutenko H, Horbal L, Muryn A, Dacyuk Y, Kalinowski J, Luzhetskyy A, Fedorenko V (2015)
The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expression.
World Journal of Microbiology and Biotechnology 31(8): 1297-1301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[189]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746
Rückert C, Leipoldt F, Zeyhle P, Fenical W, Jensen PR, Kalinowski J, Heide L, Kaysser L (2015)
Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry.
Journal of Biotechnology 216: 140-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
[188]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555
Müller C, Birmes FS, Rückert C, Kalinowski J, Fetzner S (2015)
Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuation.
Applied and Environmental Microbiology 81(22): 7720-7729.
PUB | DOI | WoS | PubMed | Europe PMC
 
[187]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules.
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[186]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434
Oelschlägel M, Rückert C, Kalinowski J, Schmidt G, Schlömann M, Tischler D (2015)
Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid.
International journal of systematic and evolutionary microbiology 65(Part 9): 3008-3015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[185]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160
Kurosawa K, Plassmeier J, Kalinowski J, Rückert C, Sinskey AJ (2015)
Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production.
Metabolic engineering 30: 89-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[184]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S (2015)
Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clusters.
Biotechnology Journal 10(2): 290-301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[183]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700185
Al-Dilaimi A, Bednarz H, Lömker A, Niehaus K, Kalinowski J, Rückert C (2015)
Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied banana.
International journal of systematic and evolutionary microbiology 65(Pt 1): 177-182.
PUB | DOI | WoS | PubMed | Europe PMC
 
[182]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[181]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A (2015)
Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster.
Journal of Proteomics 125: 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[180]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J (2015)
Complete genome sequence of Streptomyces lividans TK24.
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[179]
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2902782
Knebel C, Marx-Stoelting P, Pfeil R, Seeger B, Steinberg P, Mentz A, Bednarz H, Niehaus K, Kalinowski J, Noll T, Heise T (2015)
Multi-level omics analysis of combination effects of (tri-)azoles in a set of different cell lines.
Toxicology Letters 238(2): S355.
PUB | DOI | WoS
 
[178]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2723776
Heravi KM, Lange J, Watzlawick H, Kalinowski J, Altenbuchner J (2015)
Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor.
Journal of Bacteriology 197(5): 959-972.
PUB | DOI | WoS
 
[177]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901032
Mahr R, Gaetgens C, Gaetgens J, Polen T, Kalinowski J, Frunzke J (2015)
Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum.
Metabolic Engineering 32: 184-194.
PUB | DOI | WoS | PubMed | Europe PMC
 
[176]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, Jacques P, Huijbers MME, van Berkel WJH, Weber T, Wohlleben W, Kalinowski J (2015)
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential.
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[175]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
Kulis-Horn R, Persicke M, Kalinowski J (2015)
Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibition.
Journal of Biotechnology 206: 26-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[174]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
Fernandes de Brito L, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia L, Wendisch VF (2015)
Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium.
Journal of Biotechnology 207: 30-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[173]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
Rebets Y, Tokovenko B, Lushchyk I, Rückert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A (2014)
Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.
BMC genomics 15(1): 885.
PUB | DOI | WoS | PubMed | Europe PMC
 
[172]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
PLOS ONE 9(9): e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[171]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853
Zeyhle P, Bauer JS, Kalinowski J, Shin-ya K, Gross H, Heide L (2014)
Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete.
PLoS ONE 9(6).
PUB | DOI | WoS | PubMed | Europe PMC
 
[170]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
Lübke N-C, Wolf T, Braun R, Rückert C, Kalinowski J (2014)
Vom Schärfesensor zur mikrobiellen Brennstoffzelle.
BIOspektrum 20(4): 468-469.
PUB | DOI
 
[169]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
Neshat A, Mentz A, Rückert C, Kalinowski J (2014)
Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis.
Journal of biotechnology 190: 55-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
[168]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A (2014)
ReadXplorer - Visualization and Analysis of Mapped Sequences.
Bioinformatics 30(16): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
[167]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A (2014)
Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.
Journal of Biotechnology 190: 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[166]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
Flinspach K, Rückert C, Kalinowski J, Heide L, Apel AK (2014)
Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin.
Genome announcements 2(1): e01146-13.
PUB | DOI | PubMed | Europe PMC
 
[165]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UAE, Heycke N, Schmitt S, Rinke C, Helfrich EJN, Brachmann AO, Gurgui C, Wakimoto T, Kracht M, Crüsemann M, Hentschel U, Abe I, Matsunaga S, Kalinowski J, Takeyama H, Piel J (2014)
An environmental bacterial taxon with a large and distinct metabolic repertoire.
Nature 506(7486): 58-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[164]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148
Kulis-Horn R, Persicke M, Kalinowski J (2014)
Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum.
Microbial Biotechnology 7(1): 5-25.
PUB | DOI | WoS | PubMed | Europe PMC
 
[163]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289
Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C (2014)
Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer.
Journal of Biotechnology 189: 70-71.
PUB | DOI | WoS | PubMed | Europe PMC
 
[162]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
Walter F, Albersmeier A, Kalinowski J, Rückert C (2014)
Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese.
Journal of Biotechnology 189: 76-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
[161]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656728
Chi BK, Busche T, Van Laer K, Baesell K, Becher D, Clermont L, Seibold GM, Persicke M, Kalinowski J, Messens J, Antelmann H (2014)
Protein S-Mycothiolation Functions as Redox-Switch and Thiol Protection Mechanism in Corynebacterium glutamicum Under Hypochlorite Stress.
Antioxidants & Redox Signaling 20(4): 589-605.
PUB | DOI | WoS | PubMed | Europe PMC
 
[160]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph.
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[159]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707667
Zeyhle P, Bauer JS, Steimle M, Leipoldt F, Roesch M, Kalinowski J, Gross H, Heide L (2014)
A Membrane-Bound Prenyltransferase Catalyzes the O-Prenylation of 1,6-Dihydroxyphenazine in the Marine Bacterium Streptomyces sp CNQ-509.
ChemBioChem 15(16): 2385-2392.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986
Rückert C, Kalinowski J, Heide L, Apel AK (2014)
Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin.
Genome announcements 2(1): e01147-13.
PUB | DOI | PubMed | Europe PMC
 
[157]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806
Busche T, Pfeifer-Sancar K, Rückert C, Kalinowski J (2014)
Identifizierung von Promotoren in Corynebacterium glutamicum.
BIOspektrum 20(3): 284-287.
PUB | DOI
 
[156]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)
Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.
Journal of biotechnology 178: 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[155]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689749
Milse J, Petri K, Rückert C, Kalinowski J (2014)
Transcriptional response of Corynebacterium glutamicum ATCC 13032 to hydrogen peroxide stress and characterization of the OxyR regulon.
Journal of Biotechnology 190: 40-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662843
Myronovskyi M, Tokovenko B, Brötz E, Rückert C, Kalinowski J, Luzhetskyy A (2014)
Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activation.
Applied microbiology and biotechnology 98(2): 795-806.
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693535
Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C (2014)
Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid.
Journal of biotechnology 189: 46-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[152]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis.
PLoS ONE 9(11): e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[151]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler S, Ortseifen V, Persicke M, Klein A, Neshat A, Niehaus K, Schneiker-Bekel S, Walter F, Wehmeier UF, Kalinowski J, Pühler A (2014)
Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110.
Journal of Biotechnology 191: 113-120.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676082
Ian E, Malko DB, Sekurova ON, Bredholt H, Rückert C, Borisova ME, Albersmeier A, Kalinowski J, Gelfand MS, Zotchev SB (2014)
Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential.
PloS one 9(5): 96719.
PUB | DOI | WoS | PubMed | Europe PMC
 
[149]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977
Petri K, Walter F, Persicke M, Rückert C, Kalinowski J (2013)
A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum.
BMC Genomics 14(1): 713.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[148]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
Mentz A, Neshat A, Pfeifer-Sancar K, Pühler A, Rückert C, Kalinowski J (2013)
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
BMC Genomics 14(1): 714.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[147]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373
Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J (2013)
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
BMC Genomics 14(1): 888.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[146]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Corrigendum: Updating benchtop sequencing performance comparison.
Nature biotechnology 31(12): 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil.
Journal of Biotechnology 168(4): 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A (2013)
The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism.
Journal of Biotechnology 167(2): 178-189.
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555771
Pátek M, Holátko J, Busche T, Kalinowski J, Nešvera J (2013)
Corynebacterium glutamicum promoters: a practical approach.
Microbial Biotechnology 6(2): 103-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S (2013)
Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study.
PLoS medicine 10(2): e1001387.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625606
Klaffl S, Brocker M, Kalinowski J, Eikmanns BJ, Bott M (2013)
Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum.
Journal Of Bacteriology 195(18): 4283-4296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[140]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.
Journal of Biotechnology 168(4): 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Updating benchtop sequencing performance comparison.
Nature Biotechnology 31(4): 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614036
Baumgart M, Unthan S, Rückert C, Sivalingam J, Grünberger A, Kalinowski J, Bott M, Noack S, Frunzke J (2013)
Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnology.
Applied and environmental microbiology 79(19): 6006-6015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A (2013)
Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media.
Journal of Biotechnology 167(2): 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O (2013)
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
BMC Genomics 14(1): 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier J, Busche T, Molck S, Persicke M, Pühler A, Rückert C, Kalinowski J (2013)
A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways.
Journal of Biotechnology 163(2): 225-232.
PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007
Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T).
Standards in Genomic Sciences 9(3): 505-513.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101
Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2013)
Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T).
Standards in Genomic Sciences 8(3): 516-524.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[132]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528277
Busche T, Silar R, Picmanova M, Patek M, Kalinowski J (2012)
Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum.
BMC Genomics 13(1): 445.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[131]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038
Rückert C, Albersmeier A, Al-Dilaimi A, Niehaus K, Szczepanowski R, Kalinowski J (2012)
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T).
Standards in Genomic Sciences 7(2): 284-293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Journal of bacteriology 194(24): 6818-6827.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530872
Rückert C, Licht K, Kalinowski J, Espírito Santo C, Antwerpen M, Hanczaruk M, Reischl U, Holzmann T, Gessner A, Tiemann C, Grass G (2012)
Draft Genome Sequence of Bacillus anthracis UR-1, Isolated from a German Heroin User.
Journal of bacteriology 194(21): 5997-5998.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560259
Heyer A, Gaetgens C, Hentschel E, Kalinowski J, Bott M, Frunzke J (2012)
The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicum.
Microbiology 158(Pt_12): 3020-3031.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548248
Antwerpen M, Proença DN, Rückert C, Licht K, Kalinowski J, Hanczaruk M, Tiemann C, Grass G (2012)
Draft genome sequence of Bacillus anthracis BF-1, Isolated from Bavarian cattle.
Journal of bacteriology 194(22): 6360-6361.
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2545867
Klenke C, Janowski SJ, Borck D, Widera D, Ebmeyer J, Kalinowski J, Leichtle A, Hofestädt R, Upile T, Kaltschmidt C, Kaltschmidt B, Sudhoff H (2012)
Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome Microarrays.
PLoS One 7(12): e52718.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2530508
Piel J, Freeman MF, Gurgui C, Helf M, Morinaka B, Wilson MC, Mori T, Rückert C, Steffens U, Takada K, Gernert C, Uria AR, Wakimoto T, Abe I, Hentschel U, Kalinowski J, Takeyama H, Matsunaga S (2012)
Chemical surprises from an uncultivated sponge symbiont.
Planta Medica 78(11): 1040-+.
PUB | WoS
 
[124]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486027
Laslo T, von Zaluskowski P, Gabris C, Lodd E, Rückert C, Dangel P, Kalinowski J, Auchter M, Seibold G, Eikmanns BJ (2012)
Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlR.
Journal of bacteriology 194(5): 941-955.
PUB | DOI | WoS | PubMed | Europe PMC
 
[123]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A (2012)
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
BMC Genomics 13(1): 112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[122]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501701
Beckert P, Hillemann D, Kohl T, Kalinowski J, Richter E, Niemann S, Feuerriegel S (2012)
rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains.
Antimicrobial Agents and Chemotherapy 56(5): 2743-2745.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)
MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example.
Metabolomics 8(2): 310-322.
PUB | DOI | WoS
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae.
BMC Genomics 13(1): 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2520163
Chen X, Kohl TA, Rückert C, Rodionov DA, Li L-H, Ding J-Y, Kalinowski J, Liu S-J (2012)
Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicum.
Applied and environmental microbiology 78(16): 5796-5804.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis.
BMC Genomics 12(1): 400.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites.
Journal of Biotechnology 154(2-3): 171-178.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier J, Persicke M, Pühler A, Sterthoff C, Rückert C, Kalinowski J (2011)
Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum.
Journal of Biotechnology 159(1-2): 1-11.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[115]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2440558
Jankowitsch F, Kuehm C, Kellner R, Kalinowski J, Pelzer S, Macheroux P, Mack M (2011)
A Novel N,N-8-Amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) Catalyzing the Two Terminal Steps of Roseoflavin Biosynthesis in Streptomyces davawensis.
Journal of Biological Chemistry 286(44): 38275-38285.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289491
Kalinowski J (2011)
Regulatory and Metabolic Networks for Amino Acid Production by Corynebacterium glutamicum.
Journal of Biotechnology 154(2-3): 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis.
Clinical Chemistry and Laboratory Medicine 49: S837.
PUB | WoS
 
[112]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Bioinformatics 27(10): 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093546
Auchter M, Laslo T, Fleischer C, Schiller L, Arndt A, Gaigalat L, Kalinowski J, Eikmanns BJ (2011)
Control of adhA and sucR expression by the SucR regulator in Corynebacterium glutamicum.
Journal of Biotechnology 152(3): 77-86.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1896635
Auchter M, Cramer A, Hüser A, Rückert C, Emer D, Schwarz P, Arndt A, Lange C, Kalinowski J, Wendisch VF, Eikmanns BJ (2011)
RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolism.
J Biotechnol 154(2-3): 126-139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski J, Rückert C, Szczepanowski R, Pühler A (2010)
Advanced Genomics and Transcriptomics of Industrial Microorganisms.
Chemie Ingenieur Technik 82(9): 1518-1519.
PUB | DOI
 
[108]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796753
Fraenzel B, Troetschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA (2010)
Adaptation of Corynebacterium glutamicum to salt-stress conditions.
PROTEOMICS 10(3): 445-457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795939
Chao T-C, Kalinowski J, Nyalwidhe J, Hansmeier N (2010)
Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citrate.
PROTEOMICS 10(8): 1673-1684.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968272
Fraenzel B, Poetsch A, Troetschel C, Persicke M, Kalinowski J, Wolters DA (2010)
Quantitative proteomic overview on the Corynebacterium glutamicum L-lysine producing strain DM1730.
Journal of Proteomics 73(12): 2336-2353.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
BMC Systems Biology 3(1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[104]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich SS, Brinkrolf K, Gaigalat L, Hueser AT, Rey DA, Mohrbach T, Marin K, Pühler A, Tauch A, Kalinowski J (2009)
Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032.
MICROBIOLOGY 155(1): 150-164.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588891
Follmann M, Ochrombel I, Kraemer R, Troetschel C, Poetsch A, Rückert C, Hueser A, Persicke M, Seiferling D, Kalinowski J, Marin K (2009)
Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis.
BMC Genomics 10(1): 621.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[101]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J (2009)
From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet.
NUCLEIC ACIDS RESEARCH 37(14): e97.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635517
Barreiro C, Nakunst D, Hueser AT, de Paz HD, Kalinowski J, Martin JF (2009)
Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum.
MICROBIOLOGY-SGM 155(2): 359-372.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2397428
Rückert C, Kalinowski J (2008)
Sulfur Metabolism in Corynebacterium glutamicum.
In: Corynebacteria: Genomics and Molecular Biology. Burkovski A (Ed); Norfolk, UK: Caister Academic Press: 217-240.
PUB
 
[98]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf K, Ploeger S, Solle S, Brune I, Nentwich SS, Hueser AT, Kalinowski J, Pühler A, Tauch A (2008)
The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences.
MICROBIOLOGY 154(4): 1068-1081.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
Gkogkoglou K, Mentz A, Albersmeier A, Kalinowski J, Giegerich R (2008)
Looking for non-coding RNAs in Corynebacterium glutamicum.
FEBS JOURNAL 275(Suppl. 1): 153.
PUB | WoS
 
[96]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
Rückert C, Milse J, Albersmeier A, Koch DJ, Pühler A, Kalinowski J (2008)
The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules.
BMC GENOMICS 9(1): 483.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[95]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, Kalinowski J, Kamp P-B, Lobo FP, Viehöver P, Weisshaar B, Soriano F, Droege M, Pühler A (2008)
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Journal of Biotechnology 136(1-2): 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann K-H, Abt B, Bekel T, Burger A, Engemann J, Fluegel M, Gaigalat L, Goesmann A, Graefen I, Kalinowski J, Kaup O, Kirchner O, Krause L, Linke B, McHardy A, Meyer F, Pohle S, Rückert C, Schneiker-Bekel S, Zellermann E-M, Pühler A, Eichenlaub R, Kaiser O, Bartels D (2008)
The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity.
JOURNAL OF BACTERIOLOGY 190(6): 2138-2149.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. .
PUB
 
[92]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
BMC Systems Biology 1(1): 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[91]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter F-J, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Bloecker H, Pühler A, Mueller R (2007)
Complete genome sequence of the myxobacterium Sorangium cellulosum.
Nature Biotechnology 25(11): 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596355
Walter B, Haenssler E, Kalinowski J, Burkovski A (2007)
Nitrogen metabolism and nitrogen control in corynebacteria: Variations of a common theme.
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 12(1-2): 131-138.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune I, Jochmann N, Brinkrolf K, Hueser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A (2007)
The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum.
JOURNAL OF BACTERIOLOGY 189(7): 2720-2733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier N, Chao T-C, Daschkey S, Muesken M, Kalinowski J, Pühler A, Tauch A (2007)
A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411.
PROTEOMICS 7(7): 1076-1096.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1632884
Haenssler E, Mueller T, Jessberger N, Voelzke A, Plassmeier J, Kalinowski J, Kraemer R, Burkovski A (2007)
FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 76(3): 625-632.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596102
Larisch C, Nakunst D, Hueser AT, Tauch A, Kalinowski J (2007)
The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase.
BMC Genomics 8(1): 4.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[85]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593292
Plassmeier J, Barsch A, Persicke M, Niehaus K, Kalinowski J (2007)
Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry.
Journal of Biotechnology 130(4): 354-363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst D, Larisch C, Hueser AT, Tauch A, Pühler A, Kalinowski J (2007)
The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes.
JOURNAL OF BACTERIOLOGY 189(13): 4696-4707.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat L, Schlüter J-P, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J (2007)
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum.
BMC Molecular Biology 8(1): 104.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[82]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A (2006)
Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression.
J Biotechnol 127(1): 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2006 | Zeitschriftenaufsatz | PUB-ID: 2405187
Feng J, Che Y, Milse J, Yin Y-J, Liu L, Rückert C, Shen X-H, Qi S-W, Kalinowski J, Liu S-J (2006)
The Gene ncgl2918 Encodes a Novel Maleylpyruvate Isomerase That Needs Mycothiol as Cofactor and Links Mycothiol Biosynthesis and Gentisate Assimilation in Corynebacterium glutamicum.
Journal of Biological Chemistry 281(16): 10778-10785.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[80]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A (2006)
The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.
BMC Genomics 7(1): 21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[79]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599645
Feng J, Che YS, Milse J, Yin YJ, Liu L, Ruckert C, Shen XH, Qi SW, Kalinowski J, Liu SJ (2006)
The gene ncgl2918 encodes a novel maleylpyruvate isomerase that needs mycothiol as cofactor and links mycothiol biosynthesis and gentisate assimilation in Corynebacterium glutamicum.
JOURNAL OF BIOLOGICAL CHEMISTRY 281(16): 10778-10785.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier N, Chao TC, Kalinowski J, Pühler A, Tauch A (2006)
Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae.
PROTEOMICS 6(8): 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier N, Albersmeier A, Tauch A, Damberg T, Ros R, Anselmetti D, Pühler A, Kalinowski J (2006)
The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032.
Microbiology 152(4): 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier N, Chao TC, Pühler A, Tauch A, Kalinowski J (2006)
The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032.
PROTEOMICS 6(1): 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598610
Seibold G, Auchter M, Berens S, Kalinowski J, Eikmanns BJ (2006)
Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: Growth and lysine production.
JOURNAL OF BIOTECHNOLOGY 124(2): 381-391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597814
Brockmann-Gretza O, Kalinowski J (2006)
Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase.
BMC Genomics 7(1): 230.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895365
Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W (2006)
Emerging Corynebacterium glutamicum systems biology.
Journal of Biotechnology 124(1): 74-92.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann S, Lömker A, Rückert C, Gaigalat L, Tauch A, Pühler A, Kalinowski J (2006)
Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway.
BMC Genomics 7(1): 205.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[71]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne M, Tauch A, Pühler A, Kalinowski J (2006)
The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins.
FEMS MICROBIOLOGY LETTERS 259(2): 226-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598225
Valbuena N, Letek M, Ramos A, Ayala J, Nakunst D, Kalinowski J, Mateos LM, Gil JA (2006)
Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of Ftsl.
MICROBIOLOGY-SGM 152(8): 2491-2503.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2906740
Heinz D, Bott M, Kalinowski J, Niefind K, Rakors R, Wendisch VF (2005)
The Transparent Cell.
In: BIOTECHNOLOGY 2020 – From the Transparent Cell to the Custom-designed Process. European Commision: 8-15.
PUB | Download (ext.)
 
[68]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisakova V, Patek M, Kalinowski J, Brune I, Pühler A, Tauch A (2005)
Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(6): 3255-3268.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J (2005)
The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.
MOLECULAR MICROBIOLOGY 56(4): 871-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert C, Koch DJ, Rey DA, Albersmeier A, Mormann S, Pühler A, Kalinowski J (2005)
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction.
BMC Genomics 6(1): 121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[65]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch DJ, Rückert C, Rey DA, Mix A, Pühler A, Kalinowski J (2005)
Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[64]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch DJ, Rückert C, Albersmeier A, Hüser AT, Tauch A, Pühler A, Kalinowski J (2005)
The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate.
Mol Microbiol 58(2): 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach M, Hüser AT, Kalinowski J, Pühler A, Walter B, Kramer R, Burkovski A (2005)
DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum.
JOURNAL OF BIOTECHNOLOGY 119(4): 357-367.
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[61]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune I, Brinkrolf K, Kalinowski J, Pühler A, Tauch A (2005)
The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences.
BMC Genomics 6(1): 86.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[60]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602146
Beckers G, Strosser J, Hildebrandt U, Kalinowski J, Farwick M, Kramer R, Burkovski A (2005)
Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon.
MOLECULAR MICROBIOLOGY 58(2): 580-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach M, Schafer M, Hüser AT, Kalinowski J, Pühler A, Kramer R, Burkovski A (2005)
Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(5): 2391-2402.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2004 | Sammelwerksbeitrag | PUB-ID: 2906741
Heinz D, Bott M, Kalinowski J, Niefind K, Takors R, Wendisch VF (2004)
Die gläserne Zelle.
In: BIOTECHNOLOGIE 2020 - Von der gläsernen Zelle zum maßgeschneiderten Prozess. DECHEMA: 6-13.
PUB
 
[57]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster H, Hohnjec N, Krajinski F, El Yahyaoui F, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, Gianinazzi-Pearson V, Pühler A, Gamas P, Becker A (2004)
Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.
JOURNAL OF BIOTECHNOLOGY 108(2): 95-113.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy AC, Pühler A, Kalinowski J, Meyer F (2004)
Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'.
PROTEOMICS 4(1): 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
Hartmann M, Barsch A, Niehaus K, Pühler A, Tauch A, Kalinowski J (2004)
The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
ARCHIVES OF MICROBIOLOGY 182(4): 299-312.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
Tauch A, Bischoff N, Pühler A, Kalinowski J (2004)
Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
PLASMID 52(2): 102-118.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[53]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Pühler A, Kalinowski J (2004)
Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.
J Biotechnol 112(1-2): 177-193.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[52]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397
Tauch A, Bischoff N, Brune I, Kalinowski J (2003)
Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence.
PLASMID 49(1): 63-74.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[51]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
Rückert C, Pühler A, Kalinowski J (2003)
Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 213-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350
Watt SA, Patschkowski T, Kalinowski J, Niehaus K (2003)
Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT).
Journal of Biotechnology 106(2-3): 287-300.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
Brand S, Niehaus K, Pühler A, Kalinowski J (2003)
Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope.
Archives of Microbiology 180(1): 33-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
Hartmann M, Tauch A, Eggeling L, Bathe B, Mockel B, Pühler A, Kalinowski J (2003)
Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum.
J Biotechnol 104(1-3): 199-211.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[47]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500
Puehler F, Schwarz H, Waidner B, Kalinowski J, Kaspers B, Bereswill S, Staeheli P (2003)
An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus.
JOURNAL OF BIOLOGICAL CHEMISTRY 278(9): 6905-6911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
EMMA: a platform for consistent storage and efficient analysis of microarray data.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
McHardy AC, Tauch A, Rückert C, Pühler A, Kalinowski J (2003)
Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum.
J Biotechnol 104(1-3): 229-240.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[44]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[43]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch A, Pühler A, Kalinowski J, Thierbach G (2003)
Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 27-40.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[42]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey DA, Pühler A, Kalinowski J (2003)
The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum.
JOURNAL OF BIOTECHNOLOGY 103(1): 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
Hüser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Pühler A, Wiegräbe I, Tauch A (2003)
Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 269-286.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Pühler A, Rey DA, Rückert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A (2003)
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Journal of Biotechnology 104(1-3): 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[39]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.
Plasmid 48(2): 117-129.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[38]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598
Tauch A, Kirchner O, Löffler B, Götker S, Pühler A, Kalinowski J (2002)
Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1.
CURRENT MICROBIOLOGY 45(5): 362-367.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[37]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539
Claes WA, Pühler A, Kalinowski J (2002)
Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle.
J Bacteriol 184(10): 2728-2739.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[36]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R (2002)
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
BIOINFORMATICS 18(1): 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526
Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains.
JOURNAL OF BIOTECHNOLOGY 99(1): 79-91.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[34]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804
Tauch A, Wehmeier L, Gotker S, Pühler A, Kalinowski J (2001)
Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism.
FEMS Microbiol Lett 201(1): 53-58.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[33]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981
Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Pühler A, Bendt AK, Kramer R, Burkovski A (2001)
Proteome analysis of Corynebacterium glutamicum.
ELECTROPHORESIS 22(9): 1712-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[32]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736
Wehmeier L, Brockmann-Gretza O, Pisabarro A, Tauch A, Pühler A, Martin JF, Kalinowski J (2001)
A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvation.
Microbiology 147: 691-700.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[31]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384
Tauch A, Krieft S, Kalinowski J, Pühler A (2000)
The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens.
MOLECULAR AND GENERAL GENETICS 263(1): 1-11.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[30]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501
Tauch A, Pühler A, Kalinowski J, Thierbach G (2000)
TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems.
PLASMID 44(3): 285-291.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[29]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449
Elischewski F, Pühler A, Kalinowski J (1999)
Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase.
JOURNAL OF BIOTECHNOLOGY 75(2-3): 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329
Tauch A, Krieft S, Pühler A, Kalinowski J (1999)
The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum.
FEMS Microbiol Lett 173(1): 203-209.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[27]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284
Dusch N, Pühler A, Kalinowski J (1999)
Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli.
Appl Environ Microbiol 65(4): 1530-1539.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[26]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156
Quast K, Bathe B, Pühler A, Kalinowski J (1999)
The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism.
Mol Gen Genet 262(3): 568-578.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[25]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331
Götting C, Thierbach G, Pühler A, Kalinowski J (1998)
Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coli.
BIOTECHNIQUES 24(3): 362-+.
PUB | WoS | PubMed | Europe PMC
 
[24]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807
Peters-Wendisch P, Kreutzer C, Kalinowski J, Pátek M, Sahm H, Eikmanns BJ (1998)
Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene.
Microbiology-Sgm 144(4): 915-927.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[23]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721
Tauch A, Zheng ZX, Pühler A, Kalinowski J (1998)
Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicum.
Plasmid 40(2): 126-139.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[22]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135
Wehmeier L, Schafer A, Burkovski A, Kramer R, Mechold U, Malke H, Pühler A, Kalinowski J (1998)
The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolism.
Microbiology 144(7): 1853-1862.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[21]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704
Tauch A, Hermann T, Burkovski A, Kramer R, Pühler A, Kalinowski J (1998)
Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product.
ARCHIVES OF MICROBIOLOGY 169(4): 303-312.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[20]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635
Schäfer A, Tauch A, Droste N, Pühler A, Kalinowski J (1997)
The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain.
Gene 203(2): 95-101.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[19]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471
Jäger W, Kalinowski J, Pühler A (1997)
A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli.
J Bacteriol 179(7): 2449-2451.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[18]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976
Fernandez-Gonzalez C, Gil JA, Mateos LM, Schwarzer A, Schafer A, Kalinowski J, Pühler A, Martin JF (1996)
Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genes.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 46(5-6): 554-558.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621
Jäger W, Peters-Wendisch P, Kalinowski J, Pühler A (1996)
A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins.
Arch Microbiol 166(2): 76-82.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[16]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387
Bathe B, Kalinowski J, Pühler A (1996)
A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome.
MOLECULAR & GENERAL GENETICS 252(3): 255-265.
PUB | WoS | PubMed | Europe PMC
 
[15]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415
Mateos LM, Schäfer A, Kalinowski J, Martin JF, Pühler A (1996)
Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugation.
JOURNAL OF BACTERIOLOGY 178(19): 5768-5775.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658
Jäger W, Schäfer A, Kalinowski J, Pühler A (1995)
Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection marker.
FEMS MICROBIOLOGY LETTERS 126(1): 1-6.
PUB | WoS | PubMed | Europe PMC
 
[13]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693
Tauch A, Kassing F, Kalinowski J, Pühler A (1995)
The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicum.
PLASMID 33(3): 168-179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972
Tauch A, KASSING F, Kalinowski J, Pühler A (1995)
The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX.
Plasmid 34(2): 119-131.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[11]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393
Schäfer A, Kalinowski J, Pühler A (1994)
Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 60(2): 756-759.
PUB | WoS | PubMed | Europe PMC
 
[10]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272
Tauch A, Kirchner O, Wehmeier L, Kalinowski J, Pühler A (1994)
Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli.
FEMS MICROBIOLOGY LETTERS 123(3): 343-347.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046
SCHAEFER A, Tauch A, JAEGER W, Kalinowski J, THIERBACH G, Pühler A (1994)
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.
Gene 145(1): 69-73.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[8]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103
Schäfer A, Schwarzer A, Kalinowski J, Pühler A (1994)
Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli.
J Bacteriol 176(23): 7309-7319.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[7]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702
Schrumpf B, Schwarzer A, Kalinowski J, Pühler A, Eggeling L, Sahm H (1991)
A functionally split pathway for lysine synthesis in Corynebacterium glutamicium.
Journal of Bacteriology 173(14): 4510-4516.
PUB | WoS | PubMed | Europe PMC
 
[6]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978
Kalinowski J, Cremer J, Bachmann B, Eggeling L, Sahm H, Pühler A (1991)
Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum.
MOLECULAR MICROBIOLOGY 5(5): 1197-1204.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[5]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831
Seep-Feldhaus AH, Kalinowski J, Pühler A (1991)
Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake.
MOLECULAR MICROBIOLOGY 5(12): 2995-3005.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001
Thierbach G, Kalinowski J, Bachmann B, Pühler A (1990)
Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 32(4): 443-448.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883
Schäfer A, Kalinowski J, Simon R, Seep-Feldhaus AH, Pühler A (1990)
High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria.
JOURNAL OF BACTERIOLOGY 172(3): 1663-1666.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917
Kalinowski J, Bachmann B, Thierbach G, Pühler A (1990)
Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicum.
MOLECULAR & GENERAL GENETICS 224(3): 317-324.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[1]
1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907
PRIEFER UB, Kalinowski J, RUGER B, HEUMANN W, Pühler A (1989)
ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTS.
PLASMID 21(2): 120-128.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 

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[302]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L (2019)
Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase.
CHEMICAL SCIENCE 10(16): 4486-4490.
PUB | DOI | WoS | PubMed | Europe PMC
 
[301]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
Farr M, Ferreira S, Al-Dilaimi A, Bogeholz S, Goesmann A, Kalinowski J, Knabbe C, Faber L, Oliveira JP, Rudolph V (2019)
Fabry disease: Detection of Alu-mediated exon duplication by NGS.
Molecular and cellular probes.
PUB | DOI | PubMed | Europe PMC
 
[300]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
Hain C, Cieslak C, Mentz A, Stranzenbach R, Kalinowski J, Stadler R (2019)
Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke.
JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT 17(Suppl. 1): 1.
PUB | DOI | WoS
 
[299]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273
Gräwe A, Dreyer A, Vornholt T, Barteczko U, Buchholz L, Drews G, Ho UL, Jackowski ME, Kracht M, Lüders J, Bleckwehl T, Rositzka L, Ruwe M, Wittchen M, Lutter P, Müller K, Kalinowski J (2019)
A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.
PloS one 14(3): 0210940.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[298]
2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
Braeuning A, Lichtenstein D, Mentz A, Kalinowski J, Schmidt F, Poetz O, Lampen A (2019)
A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro.
In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. 392. Springer: S76-S77.
PUB | WoS
 
[297]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
Dostalova H, Busche T, Holatko J, Rucka L, Stepanek V, Barvik I, Nesvera J, Kalinowski J, Patek M (2019)
Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032.
FRONTIERS IN MICROBIOLOGY 9: 3287.
PUB | DOI | WoS | PubMed | Europe PMC
 
[296]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum S, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers S-V (2019)
Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.
FRONTIERS IN MICROBIOLOGY 9: 3201.
PUB | DOI | WoS | PubMed | Europe PMC
 
[295]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348
Jahanshah G, Miess H, Busche T, Rückert C, Kalinowski J, Rokni-Zadeh H, Gross H (2019)
Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran.
Microbiology resource announcements 8(2).
PUB | DOI | WoS | PubMed | Europe PMC
 
[294]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296
Wittchen M, Busche T, Gaspar AH, Lee JH, Ton-That H, Kalinowski J, Tauch A (2018)
Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation.
BMC Genomics 19(1): 82.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[293]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026
Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
High Quality de Novo Transcriptome Assembly of Croton tiglium.
Frontiers in Molecular Biosciences 5: 62.
PUB | PDF | DOI | Download (ext.)
 
[292]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693
Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit A-C, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman J (2018)
RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.
G3: Genes|Genomes|Genetics 8(8): 2709-2722.
PUB | PDF | DOI
 
[291]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984
Neubauer P, Widmann C, Wibberg D, Schröder L, Frese M, Kottke T, Kalinowski J, Niemann H, Sewald N (2018)
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLOS ONE 13(5): e0196797.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[290]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943
Blifernez-Klassen O, Chaudhari S, Klassen V, Wördenweber R, Steffens T, Cholewa D, Niehaus K, Kalinowski J, Kruse O (2018)
Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation.
PLOS ONE 13(6): 23.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[289]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, Kalinowski J, Kormanec J, Rückert C (2018)
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin.
Genome Announcements 6(9): e00103-18.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[288]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
Schneider O, Simic N, Aachmann FL, Rückert C, Kristiansen KA, Kalinowski J, Jiang Y, Wang L, Jiang C-L, Lale R, Zotchev SB (2018)
Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic.
FRONTIERS IN MICROBIOLOGY 9: 3139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[287]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
Van Loi V, Busche T, Preuss T, Kalinowski J, Bernhardt J, Antelmann H (2018)
The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus.
FRONTIERS IN MICROBIOLOGY 9: 3037.
PUB | DOI | WoS | PubMed | Europe PMC
 
[286]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[285]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986
Schmidt FF, Steinhilber AE, Hammer HS, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Marx-Stoelting P, Lampen A, Joos T, Poetz O (2018)
Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays.
TOXICOLOGY LETTERS 295(Suppl. 1): S87.
PUB | DOI | WoS
 
[284]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021
Jiao J, Paterson J, Busche T, Rückert C, Kalinowski J, Harwani D, Grosso H (2018)
Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial Activity.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(9): UNSP e00108-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[283]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296
Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.
Journal of Biological Engineering 12: 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[282]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806
Yuecel O, Wibberg D, Philipp B, Kalinowski J (2018)
Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(1): UNSP e01372-17.
PUB | DOI | WoS
 
[281]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679
Busche T, Tsolis KC, Koepff J, Rebets Y, Rückert C, Hamed MB, Bleidt A, Wiechert W, Lopatniuk M, Yousra A, Anne J, Karamanou S, Oldiges M, Kalinowski J, Luzhetskyy A, Economou A (2018)
Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion.
FRONTIERS IN MICROBIOLOGY 9: 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[280]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930282
Lange J, Muench E, Mueller J, Busche T, Kalinowski J, Takors R, Blombach B (2018)
Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis.
GENES 9(6): 297.
PUB | DOI | WoS | PubMed | Europe PMC
 
[279]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
Schneider O, Ilic-Tomic T, Rückert C, Kalinowski J, Gencic MS, Zivkovic MZ, Stankovic N, Radulovic NS, Vasiljevic B, Nikodinovic-Runic J, Zotchev SB (2018)
Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10.
FRONTIERS IN MICROBIOLOGY 9: 10.
PUB | DOI | WoS | PubMed | Europe PMC
 
[278]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts.
GigaScience 7(7): giy075.
PUB | DOI | WoS | PubMed | Europe PMC
 
[277]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133
Ruwe M, Rückert C, Kalinowski J, Persicke M (2018)
Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicum.
Frontiers in Microbiology 9: 916.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[276]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
Schult F, Lee TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers S-V, Siebers B (2018)
Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.
NUCLEIC ACIDS RESEARCH 46(14): 7179-7192.
PUB | DOI | WoS | PubMed | Europe PMC
 
[275]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
Paulus C, Rebets Y, Zapp J, Rückert C, Kalinowski J, Luzhetskyy A (2018)
New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme.
FRONTIERS IN MICROBIOLOGY 9: 1959.
PUB | DOI | WoS | PubMed | Europe PMC
 
[274]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
Kibret M, Guerrero-Garzon JF, Urban E, Zehl M, Wronski V-K, Rückert C, Busche T, Kalinowski J, Rollinger JM, Abate D, Zotchev SB (2018)
Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry.
FRONTIERS IN MICROBIOLOGY 9: 13.
PUB | DOI | WoS | PubMed | Europe PMC
 
[273]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971
Ganschow S, Silvery J, Kalinowski J, Tiemann C (2018)
toaSTR: A web application for forensic STR genotyping by massively parallel sequencing.
Forensic Science International: Genetics 37: 21-28.
PUB | DOI | WoS | PubMed | Europe PMC
 
[272]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
Yushchuk O, Ostash I, Vlasiuk I, Gren T, Luzhetskyy A, Kalinowski J, Fedorenko V, Ostash B (2018)
Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(19): 8419-8428.
PUB | DOI | WoS | PubMed | Europe PMC
 
[271]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing.
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
[270]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
Ludwig P, Sevin DC, Busche T, Kalinowski J, Bourdeaux F, Grininger M, Mack M (2018)
Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis.
MICROBIOLOGY-SGM 164(6): 908-919.
PUB | DOI | WoS | PubMed | Europe PMC
 
[269]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735
Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Brasen C, Kalinowski J, Siebers B, Albers S-V (2018)
Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(3): 19.
PUB | DOI | WoS
 
[268]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
Kranz A, Busche T, Vogel A, Usadel B, Kalinowski J, Bott M, Polen T (2018)
RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H.
BMC GENOMICS 19: 17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[267]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.
BMC GENOMICS 19: 15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[266]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)
Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification.
JOURNAL OF BIOTECHNOLOGY 272: 40-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[265]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
Schwentner A, Feith A, Muench E, Busche T, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum.
METABOLIC ENGINEERING 47: 31-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[264]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
Vu VL, Busche T, Tedin K, Bernhardt J, Wollenhaupt J, Huyen NTT, Weise C, Kalinowski J, Wahl MC, Fulde M, Antelmann H (2018)
Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus.
ANTIOXIDANTS & REDOX SIGNALING: 22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[263]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
Tsolis KC, Tsare E-P, Orfanoudaki G, Busche T, Kanaki K, Ramakrishnan R, Rousseau F, Schymkowitz J, Rückert C, Kalinowski J, Anne J, Karamanou S, Klapa MI, Economou A (2018)
Comprehensive subcellular topologies of polypeptides in Streptomyces.
MICROBIAL CELL FACTORIES 17: 12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[262]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[261]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)
N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII.
ZEITSCHRIFT FÜR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES 73(1-2): 49-57.
PUB | DOI | WoS | PubMed | Europe PMC
 
[260]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)
Characterization of the Actinonin Biosynthetic Gene Cluster.
CHEMBIOCHEM 19(11): 1189-1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[259]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, Lavy A, Rückert C, Ilan M, Kalinowski J, Matsunaga S, Takeyama H, Piel J (2018)
Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[258]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674
Landwehr W, Kaempfer P, Glaeser SP, Rückert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, Rohde M, Martin K, Stadler M, Wink J (2018)
Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1): 382-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[257]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367
Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, Hans S, Krämer R, Bott M, Kalinowski J, Wiechert W, Seibold G, Frunzke J, Rückert C, Wendisch VF, Noack S (2018)
Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology.
ACS Synthetic Biology 7: 132–144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[256]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)
Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA).
METALLOMICS 10(5): 722-734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[255]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, Schmidt G, Tischler D (2018)
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[254]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans.
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[253]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916525
Dostalova H, Holatko J, Busche T, Rucka L, Rapoport A, Halada P, Nesvera J, Kalinowski J, Patek M (2017)
Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum.
AMB EXPRESS 7: 133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[252]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916447
Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C (2017)
The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner.
PLOS ONE 12(10): e0186505.
PUB | DOI | WoS | PubMed | Europe PMC
 
[251]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403
Hossain MS, Persicke M, ElSayed AI, Kalinowski J, Dietz K-J (2017)
Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet.
Journal of Experimental Botany 68(21-22): 5961-5976.
PUB | DOI | WoS | PubMed | Europe PMC
 
[250]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432
Celis JS, Edgell DR, Stelbrink B, Wibberg D, Hauffe T, Blom J, Kalinowski J, Wilke T (2017)
Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
PLOS ONE 12(3): e0173734.
PUB | DOI | WoS | PubMed | Europe PMC
 
[249]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913400
Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk H-P, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2017)
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.
Antonie Van Leeuwenhoek. Journal of Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[248]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911274
Crnovčić I, Rückert C, Semsary S, Lang M, Kalinowski J, Keller U (2017)
Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C.
Adv Appl Bioinform Chem 10: 29-46.
PUB | DOI | PubMed | Europe PMC
 
[247]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908076
Makarewicz O, Lucas M, Brandt C, Herrmann L, Albersmeier A, Rückert C, Blom J, Goesmann A, van der Linden M, Kalinowski J, Pletz MW (2017)
Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15B.
PLoS One 12(1): e0169370.
PUB | DOI | WoS | PubMed | Europe PMC
 
[246]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272
Hillion M, Bernhardt J, Busche T, Rossius M, Maaß S, Becher D, Rawat M, Wirtz M, Hell R, Rückert C, Kalinowski J, Antelmann H (2017)
Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress.
Sci Rep 7(1): 1195.
PUB | DOI | WoS | PubMed | Europe PMC
 
[245]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070
Paulus C, Rebets Y, Tokovenko B, Nadmid S, Terekhova LP, Myronovskyi M, Zotchev SB, Rückert C, Braig S, Zahler S, Kalinowski J, Luzhetskyy A (2017)
New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18.
SCIENTIFIC REPORTS 7: 42382.
PUB | DOI | WoS | PubMed | Europe PMC
 
[244]
2017 | Datenpublikation | PUB-ID: 2930821
Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, Schmidt O, Vinke S, M. Whitford C, Pucker B, Droste J, Rückert C, M. Müller K, Kalinowski J (2017)
Expanding The Genetic Code.
Bielefeld University.
PUB | Dateien verfügbar | DOI
 
[243]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Highly efficient methane generation from untreated microalgae biomass.
Biotechnology for Biofuels 10: 186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[242]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116
Wolf T, Droste J, Gren T, Ortseifen V, Schneiker-Bekel S, Zemke T, Pühler A, Kalinowski J (2017)
The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110.
BMC Genomics 18: 562.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[241]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production.
Frontiers in Microbiology 8: 780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[240]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation.
Biotechnology for Biofuels 10: 197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[239]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913963
Ruwe M, Kalinowski J, Persicke M (2017)
Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicum.
Frontiers in Microbiology 8: 1601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[238]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI
 
[237]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662
Fernandes de Brito L, Irla M, Kalinowski J, Wendisch VF (2017)
Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology.
BMC Genomics 18: 846.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[236]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912419
Taniguchi H, Busche T, Patschkowski T, Niehaus K, Patek M, Kalinowski J, Wendisch VF (2017)
Physiological roles of sigma factor SigD in Corynebacterium glutamicum.
BMC Microbiology 17: 158.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[235]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110
Kulis-Horn R, Rückert C, Kalinowski J, Persicke M (2017)
Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond.
BMC Microbiology 17(1): 161.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[234]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912983
Boehm K, Meyer F, Rhomberg A, Kalinowski J, Donovan C, Bramkamp M (2017)
Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with Diploidy.
MBIO 8(3): e00511-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
[233]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
Wolf T, Schneiker-Bekel S, Neshat A, Ortseifen V, Wibberg D, Zemke T, Pühler A, Kalinowski J (2017)
Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis.
JOURNAL OF BIOTECHNOLOGY 251: 112-123.
PUB | DOI | WoS | PubMed | Europe PMC
 
[232]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916533
Sun Y-Q, Busche T, Rückert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB (2017)
Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites.
ACS SYNTHETIC BIOLOGY 6(6): 1026-1033.
PUB | DOI | WoS | PubMed | Europe PMC
 
[231]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017
Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)
Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases.
PHYTOCHEMISTRY 136: 15-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[230]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912973
Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D (2017)
Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.
FEBS JOURNAL 284(13): 2078-2095.
PUB | DOI | WoS | PubMed | Europe PMC
 
[229]
2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
Tokovenko B, Rückert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkränzer B, Myronovskyi M, Luzhetskyy A (2017)
Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease.
Genome Announc 5(20).
PUB | DOI | PubMed | Europe PMC
 
[228]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911994
Wolf F, Bauer JS, Bendel TM, Kulik A, Kalinowski J, Gross H, Kaysser L (2017)
Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and Cystargolide.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56(23): 6665-6668.
PUB | DOI | WoS | PubMed | Europe PMC
 
[227]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911273
Koepff J, Keller M, Tsolis CK, Busche T, Rückert C, Hamed MB, Anné J, Kalinowski J, Wiechert W, Economou A, Oldiges M (2017)
Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation.
Biotechnol Bioeng 114(9): 2011-2022.
PUB | DOI | WoS | PubMed | Europe PMC
 
[226]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2017)
New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4.
Zeitschrift für Naturforschung B 72(1): 53-62.
PUB | DOI | WoS
 
[225]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916444
Schwarzhans JP, Luttermann T, Geier M, Kalinowski J, Friehs K (2017)
Towards systems metabolic engineering in Pichia pastoris.
BIOTECHNOLOGY ADVANCES 35(6): 681-710.
PUB | DOI | WoS | PubMed | Europe PMC
 
[224]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[223]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913404
Grimm I, Dumke J, Vollmer T, Hinse D, Rückert C, Kalinowski J, Knabbe C, Dreier J (2017)
Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831.
Genome Announcements 5(16).
PUB | DOI | PubMed | Europe PMC
 
[222]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
Ortseifen V, Kalinowski J, Pühler A, Rückert C (2017)
The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose.
J Biotechnol 262: 84-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[221]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, Wohlleben W (2017)
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[220]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918206
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953.
International Journal of Systematic and Evolutionary Microbiology 68(1): 42-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[219]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916527
Rieke S, Heise T, Schmidt F, Haider W, Bednarz H, Niehaus K, Mentz A, Kalinowski J, Hirsch-Ernst KI, Steinberg P, Niemann L, Marx-Stoelting P (2017)
Mixture effects of azole fungicides on the adrenal gland in a broad dose range.
TOXICOLOGY 385: 28-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[218]
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913401
Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms.
International Journal of Systematic and Evolutionary Microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[217]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913406
Albersmeier A, Pfeifer-Sancar K, Rückert C, Kalinowski J (2017)
Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.
Journal of Biotechnology 257: 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[216]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes.
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[215]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904989
Shah A, Schielzeth H, Albersmeier A, Kalinowski J, Hoffman J (2016)
High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.
Ecology and Evolution 16(6): 5718-5727.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[214]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge.
Standards in Genomic Sciences 11: 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[213]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing.
Scientific Reports 6: 38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[212]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization.
Microbial Cell Factories 15: 84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[211]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa).
Genome Announcements 4(3): e00524-16.
PUB | PDF | DOI
 
[210]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143
Wibberg D, Al-Dilaimi A, Busche T, Wedderhoff I, Schrempf H, Kalinowski J, Lucana DO de O (2016)
Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose.
JOURNAL OF BIOTECHNOLOGY 222: 13-14.
PUB | DOI | WoS | PubMed | Europe PMC
 
[209]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)
Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors.
Journal of Biotechnology 232: 79-88.
PUB | DOI | WoS | PubMed | Europe PMC
 
[208]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907748
Jagmann N, Bleicher V, Busche T, Kalinowski J, Philipp B (2016)
The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila.
ENVIRONMENTAL MICROBIOLOGY 18(10): 3550-3564.
PUB | DOI | WoS | PubMed | Europe PMC
 
[207]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907722
Wolf J, Stark H, Fafenrot K, Albersmeier A, Pham TK, Mueller KB, Meyer BH, Hoffmann L, Shen L, Albaum SP, Kouril T, Schmidt-Hohagen K, Neumann-Schaal M, Braesen C, Kalinowski J, Wright PC, Albers S-V, Schomburg D, Siebers B (2016)
A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.
MOLECULAR MICROBIOLOGY 102(5): 882-908.
PUB | DOI | WoS | PubMed | Europe PMC
 
[206]
2016 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907640
Baumgart M, Unthan S, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Kalinowski J, Rückert C, Wendisch VF, Noack S, Frunzke J (2016)
Chassis organism from Corynebacterium glutamicum – Genome reduction as a tool toward improved strains for synthetic biology and industrial biotechnology.
New Biotechnology 33: S25.
PUB | DOI | WoS
 
[205]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Complete mitochondrial genome of the scleractinian coral Porites rus.
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[204]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, Vargas LK, Wendisch VF (2016)
Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems.
Soil Biology and Biochemistry 96: 191-197.
PUB | DOI | WoS
 
[203]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947
Zimmermann J, Rückert C, Kalinowski J, Lipski A (2016)
Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk.
Int J Syst Evol Microbiol 66: 5288-5293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[202]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905959
Horbal L, Ostash B, Luzhetskyy A, Walker S, Kalinowski J, Fedorenko V (2016)
A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 100(17): 7629-7638.
PUB | DOI | WoS | PubMed | Europe PMC
 
[201]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)
Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System.
Journal of Biotechnology 231: 122-128.
PUB | DOI | WoS | PubMed | Europe PMC
 
[200]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
Walter F, Grenz S, Ortseifen V, Persicke M, Kalinowski J (2016)
Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity.
Journal of Biotechnology 232: 99-109.
PUB | DOI | WoS | PubMed | Europe PMC
 
[199]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
BMC Genomics 17(1): 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[198]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A (2016)
Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters.
Journal of Proteomics 131: 140-148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[197]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905633
Manderscheid N, Bilyk B, Busche T, Kalinowski J, Paululat T, Bechthold A, Petzke L, Luzhetskyy A (2016)
An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous host.
JOURNAL OF BIOTECHNOLOGY 232: 110-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[196]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
BMC Genomics 17: 796.
PUB | DOI | WoS | PubMed | Europe PMC
 
[195]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901251
Leipoldt F, Zeyhle P, Kulik A, Kalinowski J, Heide L, Kaysser L (2015)
Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid Compounds.
Plos One 10(12): e0143237.
PUB | DOI | WoS | PubMed | Europe PMC
 
[194]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758666
Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T, Giard J-C, Kalinowski J, Hain T, Hartke A (2015)
The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice.
PLoS ONE 10(5): e0126143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[193]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)
De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.
BMC Genomics 16: 1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[192]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868
Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2015)
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T.
Standards in Genomic Sciences 10: 5.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[191]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344
Irla M, Neshat A, Brautaset T, Rückert C, Kalinowski J, Wendisch VF (2015)
Transcriptome analysis of thermophilic methylotrophic *Bacillus methanolicus* MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape.
BMC Genomics 16: 73.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[190]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764291
Ostash B, Yushchuk O, Tistechok S, Mutenko H, Horbal L, Muryn A, Dacyuk Y, Kalinowski J, Luzhetskyy A, Fedorenko V (2015)
The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expression.
World Journal of Microbiology and Biotechnology 31(8): 1297-1301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[189]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746
Rückert C, Leipoldt F, Zeyhle P, Fenical W, Jensen PR, Kalinowski J, Heide L, Kaysser L (2015)
Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry.
Journal of Biotechnology 216: 140-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
[188]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555
Müller C, Birmes FS, Rückert C, Kalinowski J, Fetzner S (2015)
Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuation.
Applied and Environmental Microbiology 81(22): 7720-7729.
PUB | DOI | WoS | PubMed | Europe PMC
 
[187]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules.
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[186]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434
Oelschlägel M, Rückert C, Kalinowski J, Schmidt G, Schlömann M, Tischler D (2015)
Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid.
International journal of systematic and evolutionary microbiology 65(Part 9): 3008-3015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[185]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160
Kurosawa K, Plassmeier J, Kalinowski J, Rückert C, Sinskey AJ (2015)
Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production.
Metabolic engineering 30: 89-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[184]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S (2015)
Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clusters.
Biotechnology Journal 10(2): 290-301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[183]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700185
Al-Dilaimi A, Bednarz H, Lömker A, Niehaus K, Kalinowski J, Rückert C (2015)
Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied banana.
International journal of systematic and evolutionary microbiology 65(Pt 1): 177-182.
PUB | DOI | WoS | PubMed | Europe PMC
 
[182]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[181]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A (2015)
Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster.
Journal of Proteomics 125: 1-16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[180]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J (2015)
Complete genome sequence of Streptomyces lividans TK24.
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[179]
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2902782
Knebel C, Marx-Stoelting P, Pfeil R, Seeger B, Steinberg P, Mentz A, Bednarz H, Niehaus K, Kalinowski J, Noll T, Heise T (2015)
Multi-level omics analysis of combination effects of (tri-)azoles in a set of different cell lines.
Toxicology Letters 238(2): S355.
PUB | DOI | WoS
 
[178]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2723776
Heravi KM, Lange J, Watzlawick H, Kalinowski J, Altenbuchner J (2015)
Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor.
Journal of Bacteriology 197(5): 959-972.
PUB | DOI | WoS
 
[177]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901032
Mahr R, Gaetgens C, Gaetgens J, Polen T, Kalinowski J, Frunzke J (2015)
Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum.
Metabolic Engineering 32: 184-194.
PUB | DOI | WoS | PubMed | Europe PMC
 
[176]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, Jacques P, Huijbers MME, van Berkel WJH, Weber T, Wohlleben W, Kalinowski J (2015)
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential.
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[175]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
Kulis-Horn R, Persicke M, Kalinowski J (2015)
Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibition.
Journal of Biotechnology 206: 26-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[174]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
Fernandes de Brito L, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia L, Wendisch VF (2015)
Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium.
Journal of Biotechnology 207: 30-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[173]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
Rebets Y, Tokovenko B, Lushchyk I, Rückert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A (2014)
Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.
BMC genomics 15(1): 885.
PUB | DOI | WoS | PubMed | Europe PMC
 
[172]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
PLOS ONE 9(9): e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[171]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853
Zeyhle P, Bauer JS, Kalinowski J, Shin-ya K, Gross H, Heide L (2014)
Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete.
PLoS ONE 9(6).
PUB | DOI | WoS | PubMed | Europe PMC
 
[170]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
Lübke N-C, Wolf T, Braun R, Rückert C, Kalinowski J (2014)
Vom Schärfesensor zur mikrobiellen Brennstoffzelle.
BIOspektrum 20(4): 468-469.
PUB | DOI
 
[169]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
Neshat A, Mentz A, Rückert C, Kalinowski J (2014)
Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis.
Journal of biotechnology 190: 55-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
[168]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A (2014)
ReadXplorer - Visualization and Analysis of Mapped Sequences.
Bioinformatics 30(16): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
[167]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A (2014)
Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.
Journal of Biotechnology 190: 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
[166]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
Flinspach K, Rückert C, Kalinowski J, Heide L, Apel AK (2014)
Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin.
Genome announcements 2(1): e01146-13.
PUB | DOI | PubMed | Europe PMC
 
[165]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UAE, Heycke N, Schmitt S, Rinke C, Helfrich EJN, Brachmann AO, Gurgui C, Wakimoto T, Kracht M, Crüsemann M, Hentschel U, Abe I, Matsunaga S, Kalinowski J, Takeyama H, Piel J (2014)
An environmental bacterial taxon with a large and distinct metabolic repertoire.
Nature 506(7486): 58-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[164]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148
Kulis-Horn R, Persicke M, Kalinowski J (2014)
Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum.
Microbial Biotechnology 7(1): 5-25.
PUB | DOI | WoS | PubMed | Europe PMC
 
[163]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289
Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C (2014)
Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer.
Journal of Biotechnology 189: 70-71.
PUB | DOI | WoS | PubMed | Europe PMC
 
[162]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
Walter F, Albersmeier A, Kalinowski J, Rückert C (2014)
Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese.
Journal of Biotechnology 189: 76-77.
PUB | DOI | WoS | PubMed | Europe PMC
 
[161]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656728
Chi BK, Busche T, Van Laer K, Baesell K, Becher D, Clermont L, Seibold GM, Persicke M, Kalinowski J, Messens J, Antelmann H (2014)
Protein S-Mycothiolation Functions as Redox-Switch and Thiol Protection Mechanism in Corynebacterium glutamicum Under Hypochlorite Stress.
Antioxidants & Redox Signaling 20(4): 589-605.
PUB | DOI | WoS | PubMed | Europe PMC
 
[160]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph.
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[159]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707667
Zeyhle P, Bauer JS, Steimle M, Leipoldt F, Roesch M, Kalinowski J, Gross H, Heide L (2014)
A Membrane-Bound Prenyltransferase Catalyzes the O-Prenylation of 1,6-Dihydroxyphenazine in the Marine Bacterium Streptomyces sp CNQ-509.
ChemBioChem 15(16): 2385-2392.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986
Rückert C, Kalinowski J, Heide L, Apel AK (2014)
Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin.
Genome announcements 2(1): e01147-13.
PUB | DOI | PubMed | Europe PMC
 
[157]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806
Busche T, Pfeifer-Sancar K, Rückert C, Kalinowski J (2014)
Identifizierung von Promotoren in Corynebacterium glutamicum.
BIOspektrum 20(3): 284-287.
PUB | DOI
 
[156]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)
Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.
Journal of biotechnology 178: 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[155]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689749
Milse J, Petri K, Rückert C, Kalinowski J (2014)
Transcriptional response of Corynebacterium glutamicum ATCC 13032 to hydrogen peroxide stress and characterization of the OxyR regulon.
Journal of Biotechnology 190: 40-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662843
Myronovskyi M, Tokovenko B, Brötz E, Rückert C, Kalinowski J, Luzhetskyy A (2014)
Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activation.
Applied microbiology and biotechnology 98(2): 795-806.
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693535
Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C (2014)
Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid.
Journal of biotechnology 189: 46-47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[152]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis.
PLoS ONE 9(11): e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[151]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
Wendler S, Ortseifen V, Persicke M, Klein A, Neshat A, Niehaus K, Schneiker-Bekel S, Walter F, Wehmeier UF, Kalinowski J, Pühler A (2014)
Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110.
Journal of Biotechnology 191: 113-120.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676082
Ian E, Malko DB, Sekurova ON, Bredholt H, Rückert C, Borisova ME, Albersmeier A, Kalinowski J, Gelfand MS, Zotchev SB (2014)
Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential.
PloS one 9(5): 96719.
PUB | DOI | WoS | PubMed | Europe PMC
 
[149]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977
Petri K, Walter F, Persicke M, Rückert C, Kalinowski J (2013)
A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum.
BMC Genomics 14(1): 713.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[148]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969
Mentz A, Neshat A, Pfeifer-Sancar K, Pühler A, Rückert C, Kalinowski J (2013)
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
BMC Genomics 14(1): 714.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[147]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373
Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J (2013)
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
BMC Genomics 14(1): 888.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[146]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Corrigendum: Updating benchtop sequencing performance comparison.
Nature biotechnology 31(12): 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil.
Journal of Biotechnology 168(4): 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A (2013)
The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism.
Journal of Biotechnology 167(2): 178-189.
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555771
Pátek M, Holátko J, Busche T, Kalinowski J, Nešvera J (2013)
Corynebacterium glutamicum promoters: a practical approach.
Microbial Biotechnology 6(2): 103-117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S (2013)
Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study.
PLoS medicine 10(2): e1001387.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625606
Klaffl S, Brocker M, Kalinowski J, Eikmanns BJ, Bott M (2013)
Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum.
Journal Of Bacteriology 195(18): 4283-4296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[140]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.
Journal of Biotechnology 168(4): 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
Updating benchtop sequencing performance comparison.
Nature Biotechnology 31(4): 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614036
Baumgart M, Unthan S, Rückert C, Sivalingam J, Grünberger A, Kalinowski J, Bott M, Noack S, Frunzke J (2013)
Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnology.
Applied and environmental microbiology 79(19): 6006-6015.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A (2013)
Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media.
Journal of Biotechnology 167(2): 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O (2013)
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
BMC Genomics 14(1): 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
Plassmeier J, Busche T, Molck S, Persicke M, Pühler A, Rückert C, Kalinowski J (2013)
A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways.
Journal of Biotechnology 163(2): 225-232.
PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007
Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T).
Standards in Genomic Sciences 9(3): 505-513.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101
Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2013)
Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T).
Standards in Genomic Sciences 8(3): 516-524.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[132]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528277
Busche T, Silar R, Picmanova M, Patek M, Kalinowski J (2012)
Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum.
BMC Genomics 13(1): 445.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[131]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038
Rückert C, Albersmeier A, Al-Dilaimi A, Niehaus K, Szczepanowski R, Kalinowski J (2012)
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T).
Standards in Genomic Sciences 7(2): 284-293.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Journal of bacteriology 194(24): 6818-6827.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530872
Rückert C, Licht K, Kalinowski J, Espírito Santo C, Antwerpen M, Hanczaruk M, Reischl U, Holzmann T, Gessner A, Tiemann C, Grass G (2012)
Draft Genome Sequence of Bacillus anthracis UR-1, Isolated from a German Heroin User.
Journal of bacteriology 194(21): 5997-5998.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560259
Heyer A, Gaetgens C, Hentschel E, Kalinowski J, Bott M, Frunzke J (2012)
The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicum.
Microbiology 158(Pt_12): 3020-3031.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548248
Antwerpen M, Proença DN, Rückert C, Licht K, Kalinowski J, Hanczaruk M, Tiemann C, Grass G (2012)
Draft genome sequence of Bacillus anthracis BF-1, Isolated from Bavarian cattle.
Journal of bacteriology 194(22): 6360-6361.
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2545867
Klenke C, Janowski SJ, Borck D, Widera D, Ebmeyer J, Kalinowski J, Leichtle A, Hofestädt R, Upile T, Kaltschmidt C, Kaltschmidt B, Sudhoff H (2012)
Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome Microarrays.
PLoS One 7(12): e52718.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2530508
Piel J, Freeman MF, Gurgui C, Helf M, Morinaka B, Wilson MC, Mori T, Rückert C, Steffens U, Takada K, Gernert C, Uria AR, Wakimoto T, Abe I, Hentschel U, Kalinowski J, Takeyama H, Matsunaga S (2012)
Chemical surprises from an uncultivated sponge symbiont.
Planta Medica 78(11): 1040-+.
PUB | WoS
 
[124]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486027
Laslo T, von Zaluskowski P, Gabris C, Lodd E, Rückert C, Dangel P, Kalinowski J, Auchter M, Seibold G, Eikmanns BJ (2012)
Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlR.
Journal of bacteriology 194(5): 941-955.
PUB | DOI | WoS | PubMed | Europe PMC
 
[123]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A (2012)
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
BMC Genomics 13(1): 112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[122]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501701
Beckert P, Hillemann D, Kohl T, Kalinowski J, Richter E, Niemann S, Feuerriegel S (2012)
rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains.
Antimicrobial Agents and Chemotherapy 56(5): 2743-2745.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)
MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example.
Metabolomics 8(2): 310-322.
PUB | DOI | WoS
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae.
BMC Genomics 13(1): 465.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2520163
Chen X, Kohl TA, Rückert C, Rodionov DA, Li L-H, Ding J-Y, Kalinowski J, Liu S-J (2012)
Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicum.
Applied and environmental microbiology 78(16): 5796-5804.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis.
BMC Genomics 12(1): 400.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites.
Journal of Biotechnology 154(2-3): 171-178.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
Plassmeier J, Persicke M, Pühler A, Sterthoff C, Rückert C, Kalinowski J (2011)
Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum.
Journal of Biotechnology 159(1-2): 1-11.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[115]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2440558
Jankowitsch F, Kuehm C, Kellner R, Kalinowski J, Pelzer S, Macheroux P, Mack M (2011)
A Novel N,N-8-Amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) Catalyzing the Two Terminal Steps of Roseoflavin Biosynthesis in Streptomyces davawensis.
Journal of Biological Chemistry 286(44): 38275-38285.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289491
Kalinowski J (2011)
Regulatory and Metabolic Networks for Amino Acid Production by Corynebacterium glutamicum.
Journal of Biotechnology 154(2-3): 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis.
Clinical Chemistry and Laboratory Medicine 49: S837.
PUB | WoS
 
[112]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Bioinformatics 27(10): 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093546
Auchter M, Laslo T, Fleischer C, Schiller L, Arndt A, Gaigalat L, Kalinowski J, Eikmanns BJ (2011)
Control of adhA and sucR expression by the SucR regulator in Corynebacterium glutamicum.
Journal of Biotechnology 152(3): 77-86.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1896635
Auchter M, Cramer A, Hüser A, Rückert C, Emer D, Schwarz P, Arndt A, Lange C, Kalinowski J, Wendisch VF, Eikmanns BJ (2011)
RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolism.
J Biotechnol 154(2-3): 126-139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486400
Kalinowski J, Rückert C, Szczepanowski R, Pühler A (2010)
Advanced Genomics and Transcriptomics of Industrial Microorganisms.
Chemie Ingenieur Technik 82(9): 1518-1519.
PUB | DOI
 
[108]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796753
Fraenzel B, Troetschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA (2010)
Adaptation of Corynebacterium glutamicum to salt-stress conditions.
PROTEOMICS 10(3): 445-457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795939
Chao T-C, Kalinowski J, Nyalwidhe J, Hansmeier N (2010)
Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citrate.
PROTEOMICS 10(8): 1673-1684.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968272
Fraenzel B, Poetsch A, Troetschel C, Persicke M, Kalinowski J, Wolters DA (2010)
Quantitative proteomic overview on the Corynebacterium glutamicum L-lysine producing strain DM1730.
Journal of Proteomics 73(12): 2336-2353.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
BMC Systems Biology 3(1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[104]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635951
Nentwich SS, Brinkrolf K, Gaigalat L, Hueser AT, Rey DA, Mohrbach T, Marin K, Pühler A, Tauch A, Kalinowski J (2009)
Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032.
MICROBIOLOGY 155(1): 150-164.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588891
Follmann M, Ochrombel I, Kraemer R, Troetschel C, Poetsch A, Rückert C, Hueser A, Persicke M, Seiferling D, Kalinowski J, Marin K (2009)
Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis.
BMC Genomics 10(1): 621.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[101]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591178
Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J (2009)
From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet.
NUCLEIC ACIDS RESEARCH 37(14): e97.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635517
Barreiro C, Nakunst D, Hueser AT, de Paz HD, Kalinowski J, Martin JF (2009)
Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum.
MICROBIOLOGY-SGM 155(2): 359-372.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2397428
Rückert C, Kalinowski J (2008)
Sulfur Metabolism in Corynebacterium glutamicum.
In: Corynebacteria: Genomics and Molecular Biology. Burkovski A (Ed); Norfolk, UK: Caister Academic Press: 217-240.
PUB
 
[98]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588078
Brinkrolf K, Ploeger S, Solle S, Brune I, Nentwich SS, Hueser AT, Kalinowski J, Pühler A, Tauch A (2008)
The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences.
MICROBIOLOGY 154(4): 1068-1081.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
Gkogkoglou K, Mentz A, Albersmeier A, Kalinowski J, Giegerich R (2008)
Looking for non-coding RNAs in Corynebacterium glutamicum.
FEBS JOURNAL 275(Suppl. 1): 153.
PUB | WoS
 
[96]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585560
Rückert C, Milse J, Albersmeier A, Koch DJ, Pühler A, Kalinowski J (2008)
The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules.
BMC GENOMICS 9(1): 483.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[95]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, Kalinowski J, Kamp P-B, Lobo FP, Viehöver P, Weisshaar B, Soriano F, Droege M, Pühler A (2008)
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Journal of Biotechnology 136(1-2): 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592345
Gartemann K-H, Abt B, Bekel T, Burger A, Engemann J, Fluegel M, Gaigalat L, Goesmann A, Graefen I, Kalinowski J, Kaup O, Kirchner O, Krause L, Linke B, McHardy A, Meyer F, Pohle S, Rückert C, Schneiker-Bekel S, Zellermann E-M, Pühler A, Eichenlaub R, Kaiser O, Bartels D (2008)
The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity.
JOURNAL OF BACTERIOLOGY 190(6): 2138-2149.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. .
PUB
 
[92]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
BMC Systems Biology 1(1): 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[91]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter F-J, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Bloecker H, Pühler A, Mueller R (2007)
Complete genome sequence of the myxobacterium Sorangium cellulosum.
Nature Biotechnology 25(11): 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596355
Walter B, Haenssler E, Kalinowski J, Burkovski A (2007)
Nitrogen metabolism and nitrogen control in corynebacteria: Variations of a common theme.
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 12(1-2): 131-138.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594087
Brune I, Jochmann N, Brinkrolf K, Hueser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A (2007)
The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum.
JOURNAL OF BACTERIOLOGY 189(7): 2720-2733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594426
Hansmeier N, Chao T-C, Daschkey S, Muesken M, Kalinowski J, Pühler A, Tauch A (2007)
A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411.
PROTEOMICS 7(7): 1076-1096.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1632884
Haenssler E, Mueller T, Jessberger N, Voelzke A, Plassmeier J, Kalinowski J, Kraemer R, Burkovski A (2007)
FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 76(3): 625-632.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596102
Larisch C, Nakunst D, Hueser AT, Tauch A, Kalinowski J (2007)
The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase.
BMC Genomics 8(1): 4.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[85]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593292
Plassmeier J, Barsch A, Persicke M, Niehaus K, Kalinowski J (2007)
Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry.
Journal of Biotechnology 130(4): 354-363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593371
Nakunst D, Larisch C, Hueser AT, Tauch A, Pühler A, Kalinowski J (2007)
The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes.
JOURNAL OF BACTERIOLOGY 189(13): 4696-4707.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783727
Gaigalat L, Schlüter J-P, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J (2007)
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum.
BMC Molecular Biology 8(1): 104.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[82]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A (2006)
Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression.
J Biotechnol 127(1): 21-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2006 | Zeitschriftenaufsatz | PUB-ID: 2405187
Feng J, Che Y, Milse J, Yin Y-J, Liu L, Rückert C, Shen X-H, Qi S-W, Kalinowski J, Liu S-J (2006)
The Gene ncgl2918 Encodes a Novel Maleylpyruvate Isomerase That Needs Mycothiol as Cofactor and Links Mycothiol Biosynthesis and Gentisate Assimilation in Corynebacterium glutamicum.
Journal of Biological Chemistry 281(16): 10778-10785.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[80]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773628
Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A (2006)
The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.
BMC Genomics 7(1): 21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[79]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599645
Feng J, Che YS, Milse J, Yin YJ, Liu L, Ruckert C, Shen XH, Qi SW, Kalinowski J, Liu SJ (2006)
The gene ncgl2918 encodes a novel maleylpyruvate isomerase that needs mycothiol as cofactor and links mycothiol biosynthesis and gentisate assimilation in Corynebacterium glutamicum.
JOURNAL OF BIOLOGICAL CHEMISTRY 281(16): 10778-10785.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
Hansmeier N, Chao TC, Kalinowski J, Pühler A, Tauch A (2006)
Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae.
PROTEOMICS 6(8): 2465-2476.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599618
Hansmeier N, Albersmeier A, Tauch A, Damberg T, Ros R, Anselmetti D, Pühler A, Kalinowski J (2006)
The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032.
Microbiology 152(4): 923-935.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1600852
Hansmeier N, Chao TC, Pühler A, Tauch A, Kalinowski J (2006)
The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Cornyebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032.
PROTEOMICS 6(1): 233-250.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598610
Seibold G, Auchter M, Berens S, Kalinowski J, Eikmanns BJ (2006)
Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: Growth and lysine production.
JOURNAL OF BIOTECHNOLOGY 124(2): 381-391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597814
Brockmann-Gretza O, Kalinowski J (2006)
Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase.
BMC Genomics 7(1): 230.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895365
Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W (2006)
Emerging Corynebacterium glutamicum systems biology.
Journal of Biotechnology 124(1): 74-92.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773853
Mormann S, Lömker A, Rückert C, Gaigalat L, Tauch A, Pühler A, Kalinowski J (2006)
Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway.
BMC Genomics 7(1): 205.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[71]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
Mahne M, Tauch A, Pühler A, Kalinowski J (2006)
The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins.
FEMS MICROBIOLOGY LETTERS 259(2): 226-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598225
Valbuena N, Letek M, Ramos A, Ayala J, Nakunst D, Kalinowski J, Mateos LM, Gil JA (2006)
Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of Ftsl.
MICROBIOLOGY-SGM 152(8): 2491-2503.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2906740
Heinz D, Bott M, Kalinowski J, Niefind K, Rakors R, Wendisch VF (2005)
The Transparent Cell.
In: BIOTECHNOLOGY 2020 – From the Transparent Cell to the Custom-designed Process. European Commision: 8-15.
PUB | Download (ext.)
 
[68]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603458
Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisakova V, Patek M, Kalinowski J, Brune I, Pühler A, Tauch A (2005)
Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(6): 3255-3268.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J (2005)
The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.
MOLECULAR MICROBIOLOGY 56(4): 871-887.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771
Rückert C, Koch DJ, Rey DA, Albersmeier A, Mormann S, Pühler A, Kalinowski J (2005)
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction.
BMC Genomics 6(1): 121.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[65]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
Koch DJ, Rückert C, Rey DA, Mix A, Pühler A, Kalinowski J (2005)
Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 6104-6114.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[64]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
Koch DJ, Rückert C, Albersmeier A, Hüser AT, Tauch A, Pühler A, Kalinowski J (2005)
The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate.
Mol Microbiol 58(2): 480-494.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
Silberbach M, Hüser AT, Kalinowski J, Pühler A, Walter B, Kramer R, Burkovski A (2005)
DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum.
JOURNAL OF BIOTECHNOLOGY 119(4): 357-367.
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Journal of Bacteriology 187(13): 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[61]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606
Brune I, Brinkrolf K, Kalinowski J, Pühler A, Tauch A (2005)
The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences.
BMC Genomics 6(1): 86.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[60]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602146
Beckers G, Strosser J, Hildebrandt U, Kalinowski J, Farwick M, Kramer R, Burkovski A (2005)
Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon.
MOLECULAR MICROBIOLOGY 58(2): 580-595.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
Silberbach M, Schafer M, Hüser AT, Kalinowski J, Pühler A, Kramer R, Burkovski A (2005)
Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(5): 2391-2402.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2004 | Sammelwerksbeitrag | PUB-ID: 2906741
Heinz D, Bott M, Kalinowski J, Niefind K, Takors R, Wendisch VF (2004)
Die gläserne Zelle.
In: BIOTECHNOLOGIE 2020 - Von der gläsernen Zelle zum maßgeschneiderten Prozess. DECHEMA: 6-13.
PUB
 
[57]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
Küster H, Hohnjec N, Krajinski F, El Yahyaoui F, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, Gianinazzi-Pearson V, Pühler A, Gamas P, Becker A (2004)
Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.
JOURNAL OF BIOTECHNOLOGY 108(2): 95-113.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
McHardy AC, Pühler A, Kalinowski J, Meyer F (2004)
Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'.
PROTEOMICS 4(1): 46-58.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
Hartmann M, Barsch A, Niehaus K, Pühler A, Tauch A, Kalinowski J (2004)
The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
ARCHIVES OF MICROBIOLOGY 182(4): 299-312.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
Tauch A, Bischoff N, Pühler A, Kalinowski J (2004)
Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
PLASMID 52(2): 102-118.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[53]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130
Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Pühler A, Kalinowski J (2004)
Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.
J Biotechnol 112(1-2): 177-193.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[52]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397
Tauch A, Bischoff N, Brune I, Kalinowski J (2003)
Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence.
PLASMID 49(1): 63-74.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[51]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
Rückert C, Pühler A, Kalinowski J (2003)
Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 213-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350
Watt SA, Patschkowski T, Kalinowski J, Niehaus K (2003)
Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT).
Journal of Biotechnology 106(2-3): 287-300.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
Brand S, Niehaus K, Pühler A, Kalinowski J (2003)
Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope.
Archives of Microbiology 180(1): 33-44.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
Hartmann M, Tauch A, Eggeling L, Bathe B, Mockel B, Pühler A, Kalinowski J (2003)
Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum.
J Biotechnol 104(1-3): 199-211.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[47]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500
Puehler F, Schwarz H, Waidner B, Kalinowski J, Kaspers B, Bereswill S, Staeheli P (2003)
An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus.
JOURNAL OF BIOLOGICAL CHEMISTRY 278(9): 6905-6911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
EMMA: a platform for consistent storage and efficient analysis of microarray data.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
McHardy AC, Tauch A, Rückert C, Pühler A, Kalinowski J (2003)
Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum.
J Biotechnol 104(1-3): 229-240.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[44]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
GenDB - an open source genome annotation system for prokaryote genomes.
Nucleic Acids Research 31(8): 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[43]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
Tauch A, Pühler A, Kalinowski J, Thierbach G (2003)
Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics.
JOURNAL OF BIOTECHNOLOGY 104(1-3): 27-40.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[42]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
Rey DA, Pühler A, Kalinowski J (2003)
The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum.
JOURNAL OF BIOTECHNOLOGY 103(1): 51-65.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
Hüser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Pühler A, Wiegräbe I, Tauch A (2003)
Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source.
JOURNAL OF BIOTECHNOLOGY 106(2-3): 269-286.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Pühler A, Rey DA, Rückert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A (2003)
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Journal of Biotechnology 104(1-3): 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[39]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.
Plasmid 48(2): 117-129.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[38]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598
Tauch A, Kirchner O, Löffler B, Götker S, Pühler A, Kalinowski J (2002)
Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1.
CURRENT MICROBIOLOGY 45(5): 362-367.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[37]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539
Claes WA, Pühler A, Kalinowski J (2002)
Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle.
J Bacteriol 184(10): 2728-2739.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[36]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R (2002)
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
BIOINFORMATICS 18(1): 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526
Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains.
JOURNAL OF BIOTECHNOLOGY 99(1): 79-91.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[34]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804
Tauch A, Wehmeier L, Gotker S, Pühler A, Kalinowski J (2001)
Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism.
FEMS Microbiol Lett 201(1): 53-58.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[33]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981
Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Pühler A, Bendt AK, Kramer R, Burkovski A (2001)
Proteome analysis of Corynebacterium glutamicum.
ELECTROPHORESIS 22(9): 1712-1723.
PUB | DOI | WoS | PubMed | Europe PMC
 
[32]
2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736
Wehmeier L, Brockmann-Gretza O, Pisabarro A, Tauch A, Pühler A, Martin JF, Kalinowski J (2001)
A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvation.
Microbiology 147: 691-700.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[31]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384
Tauch A, Krieft S, Kalinowski J, Pühler A (2000)
The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens.
MOLECULAR AND GENERAL GENETICS 263(1): 1-11.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[30]
2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501
Tauch A, Pühler A, Kalinowski J, Thierbach G (2000)
TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems.
PLASMID 44(3): 285-291.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[29]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449
Elischewski F, Pühler A, Kalinowski J (1999)
Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase.
JOURNAL OF BIOTECHNOLOGY 75(2-3): 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329
Tauch A, Krieft S, Pühler A, Kalinowski J (1999)
The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum.
FEMS Microbiol Lett 173(1): 203-209.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[27]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284
Dusch N, Pühler A, Kalinowski J (1999)
Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli.
Appl Environ Microbiol 65(4): 1530-1539.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[26]
1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156
Quast K, Bathe B, Pühler A, Kalinowski J (1999)
The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism.
Mol Gen Genet 262(3): 568-578.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[25]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331
Götting C, Thierbach G, Pühler A, Kalinowski J (1998)
Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coli.
BIOTECHNIQUES 24(3): 362-+.
PUB | WoS | PubMed | Europe PMC
 
[24]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807
Peters-Wendisch P, Kreutzer C, Kalinowski J, Pátek M, Sahm H, Eikmanns BJ (1998)
Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene.
Microbiology-Sgm 144(4): 915-927.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[23]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721
Tauch A, Zheng ZX, Pühler A, Kalinowski J (1998)
Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicum.
Plasmid 40(2): 126-139.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[22]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135
Wehmeier L, Schafer A, Burkovski A, Kramer R, Mechold U, Malke H, Pühler A, Kalinowski J (1998)
The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolism.
Microbiology 144(7): 1853-1862.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[21]
1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704
Tauch A, Hermann T, Burkovski A, Kramer R, Pühler A, Kalinowski J (1998)
Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product.
ARCHIVES OF MICROBIOLOGY 169(4): 303-312.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[20]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635
Schäfer A, Tauch A, Droste N, Pühler A, Kalinowski J (1997)
The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain.
Gene 203(2): 95-101.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[19]
1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471
Jäger W, Kalinowski J, Pühler A (1997)
A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli.
J Bacteriol 179(7): 2449-2451.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[18]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976
Fernandez-Gonzalez C, Gil JA, Mateos LM, Schwarzer A, Schafer A, Kalinowski J, Pühler A, Martin JF (1996)
Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genes.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 46(5-6): 554-558.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621
Jäger W, Peters-Wendisch P, Kalinowski J, Pühler A (1996)
A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins.
Arch Microbiol 166(2): 76-82.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[16]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387
Bathe B, Kalinowski J, Pühler A (1996)
A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome.
MOLECULAR & GENERAL GENETICS 252(3): 255-265.
PUB | WoS | PubMed | Europe PMC
 
[15]
1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415
Mateos LM, Schäfer A, Kalinowski J, Martin JF, Pühler A (1996)
Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugation.
JOURNAL OF BACTERIOLOGY 178(19): 5768-5775.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658
Jäger W, Schäfer A, Kalinowski J, Pühler A (1995)
Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection marker.
FEMS MICROBIOLOGY LETTERS 126(1): 1-6.
PUB | WoS | PubMed | Europe PMC
 
[13]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693
Tauch A, Kassing F, Kalinowski J, Pühler A (1995)
The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicum.
PLASMID 33(3): 168-179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972
Tauch A, KASSING F, Kalinowski J, Pühler A (1995)
The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX.
Plasmid 34(2): 119-131.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[11]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393
Schäfer A, Kalinowski J, Pühler A (1994)
Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 60(2): 756-759.
PUB | WoS | PubMed | Europe PMC
 
[10]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272
Tauch A, Kirchner O, Wehmeier L, Kalinowski J, Pühler A (1994)
Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli.
FEMS MICROBIOLOGY LETTERS 123(3): 343-347.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046
SCHAEFER A, Tauch A, JAEGER W, Kalinowski J, THIERBACH G, Pühler A (1994)
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.
Gene 145(1): 69-73.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[8]
1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103
Schäfer A, Schwarzer A, Kalinowski J, Pühler A (1994)
Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli.
J Bacteriol 176(23): 7309-7319.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[7]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702
Schrumpf B, Schwarzer A, Kalinowski J, Pühler A, Eggeling L, Sahm H (1991)
A functionally split pathway for lysine synthesis in Corynebacterium glutamicium.
Journal of Bacteriology 173(14): 4510-4516.
PUB | WoS | PubMed | Europe PMC
 
[6]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978
Kalinowski J, Cremer J, Bachmann B, Eggeling L, Sahm H, Pühler A (1991)
Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum.
MOLECULAR MICROBIOLOGY 5(5): 1197-1204.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[5]
1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831
Seep-Feldhaus AH, Kalinowski J, Pühler A (1991)
Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake.
MOLECULAR MICROBIOLOGY 5(12): 2995-3005.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001
Thierbach G, Kalinowski J, Bachmann B, Pühler A (1990)
Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 32(4): 443-448.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883
Schäfer A, Kalinowski J, Simon R, Seep-Feldhaus AH, Pühler A (1990)
High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria.
JOURNAL OF BACTERIOLOGY 172(3): 1663-1666.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917
Kalinowski J, Bachmann B, Thierbach G, Pühler A (1990)
Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicum.
MOLECULAR & GENERAL GENETICS 224(3): 317-324.
PUB | WoS | PubMed | Europe PMC | GenBank
 
[1]
1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907
PRIEFER UB, Kalinowski J, RUGER B, HEUMANN W, Pühler A (1989)
ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTS.
PLASMID 21(2): 120-128.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 

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