Jörn Kalinowski

PEVZ-ID
147567

479 Publikationen

Alle markieren

  • [479]
    2025 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 3000967
    Hain C, Cieslak C, Kalinowski J, Stadler R (2025)
    T-Cell Receptor Rearrangements in Early Stages of Mycosis Fungoides May Be Associated with Pronounced Copy Number Variations: A Prognostic Factor?
    Cancers 17(3): 556.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [478]
    2025 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 3000701
    Peng F, Giacomelli G, Meyer F, Linder M, Haak M, Rückert-Reed C, Weiß M, Kalinowski J, Bramkamp M (2025)
    Early onset of septal FtsK localization allows for efficient DNA segregation in SMC-deleted Corynebacterium glutamicum strains.
    mBio.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [477]
    2025 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 3000586
    Dymek S-M, Jacob L, Pühler A, Kalinowski J (2025)
    Targeting Transcriptional Regulators Affecting Acarbose Biosynthesis in <i>Actinoplanes</i> sp. SE50/110 Using CRISPRi Silencing.
    Microorganisms 13(1): 1.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [476]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2993270 OA
    Oppel F, Gendreizig S, Martinez-Ruiz L, Florido J, López-Rodríguez A, Pabla H, Loganathan L, Hose L, Kühnel P, Schmidt P, Schürmann M, Neumann JM, Ful FV, Scholtz L-U, Ligum D, Brasch F, Niehaus K, Escames G, Busche T, Kalinowski J, Goon P, Sudhoff H (2024)
    Mucosa-like differentiation of head and neck cancer cells is inducible and drives the epigenetic loss of cell malignancy.
    Cell Death & Disease 15(10): 724.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [475]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2999829 OA
    Stepanyshyn A, Rückert-Reed C, Busche T, Yaruta B, Andreo-Vidal A, Marinelli F, Kalinowski J, Yushchuk O (2024)
    Complete Genome Assembly of Amycolatopsis bartoniae DSM 45807T Allows the Characterization of a Novel Glycopeptide Biosynthetic Gene Cluster.
    Genes 15(12): 1651.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [474]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992998 OA
    Hoffman J, Vendrami D, Hench K, Chen R, Stoffel M, Kardos M, Amos W, Kalinowski J, Rickert D, Köhrer K, Wachtmeister T, Goebel ME, Bonin CA, Gulland FMD, Dasmahapatra KK (2024)
    Genomic and fitness consequences of a near-extinction event in the northern elephant seal.
    Nature Ecology & Evolution.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [473]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992371
    Fatykhova D, Fritsch VN, Siebert K, Methling K, Lalk M, Busche T, Kalinowski J, Weiner J, Beule D, Bertrams W, Kohler TP, Hammerschmidt S, Lowa A, Fischer M, Mieth M, Hellwig K, Frey D, Neudecker J, Rueckert JC, Toennies M, Bauer TT, Graff M, Tran H-L, Eggeling S, Gruber AD, Antelmann H, Hippenstiel S, Hocke AC (2024)
    Microenvironmental acidification by pneumococcal sugar consumption fosters barrier disruption and immune suppression in the human alveolus.
    The European respiratory journal.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [472]
    2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994036
    Pawlowski K, Wibberg D, Mehrabi S, Obaid NB, Patyi A, Berckx F, Nguyen H, Hagen M, Lundin D, Brachmann A, Blom J, Herrera-Belaroussi A, Abrouk D, Pujic P, Hahlin A-S, Kalinowski J, Normand P, Sellstedt A (2024)
    Frankia [NiFe] uptake hydrogenases and genome reduction: different lineages of loss.
    FEMS Microbiology Ecology : fiae147.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [471]
    2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994435
    Berckx F, Van Nguyen T, Hilker R, Wibberg D, Battenberg K, Kalinowski J, Berry A, Pawlowski K (2024)
    Host dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by Frankia cluster-2.
    Journal of Experimental Botany: erae446.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [470]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2999630
    Kuschmierz L, Wagner A, Schmerling C, Busche T, Kalinowski J, Bräsen C, Siebers B (2024)
    5′-untranslated region sequences enhance plasmid-based protein production in <i>Sulfolobus acidocaldarius</i>.
    Frontiers in Microbiology 15: 1443342.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [469]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2994667 OA
    Schlüter L, Hansen KØ, Isaksson J, Andersen JH, Hansen EH, Kalinowski J, Schneider YK-H (2024)
    Discovery of thiazostatin D/E using UPLC-HR-MS2-based metabolomics and σ-factor engineering of Actinoplanes sp. SE50/110.
    Frontiers in Bioengineering and Biotechnology 12.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [468]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2999351
    Blumenstein J, Dostálová H, Rucká L, Stepánek V, Busche T, Kalinowski J, Pátek M, Barvík I (2024)
    Promoter recognition specificity of Corynebacterium glutamicum stress response sigma factors sigmaD and sigmaH deciphered using computer modeling and point mutagenesis.
    Journal of Computer-Aided Molecular Design 39(1): 1.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [467]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2993996 OA
    Cieslak C, Hain C, Rückert-Reed C, Busche T, Klages LJ, Schaper-Gerhardt K, Gutzmer R, Kalinowski J, Stadler R (2024)
    Nanopore Sequencing for T-Cell Receptor Rearrangement Analysis in Cutaneous T-Cell Lymphoma.
    Cancers 16(21): 3700.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [466]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990875
    Klages LJ, Kaup O, Busche T, Kalinowski J, Rückert-Reed C (2024)
    Classification of a novel Serratia species, isolated from a wound swab in North Rhine-Westphalia: Proposal of Serratia sarumanii sp. nov.
    Systematic and Applied Microbiology: 126527.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [465]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990920 OA
    Schlüter L, Busche T, Bondzio L, Hütten A, Niehaus K, Schneiker-Bekel S, Pühler A, Kalinowski J (2024)
    Sigma Factor Engineering in Actinoplanes sp. SE50/110: Expression of the Alternative Sigma Factor Gene ACSP50_0507 (sigmaHAs) Enhances Acarbose Yield and Alters Cell Morphology.
    Microorganisms 12(6): 1241.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [464]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990923 OA
    März C, Nölting S, Wollenschläger L, Pühler A, Kalinowski J (2024)
    Role of MalQ Enzyme in a Reconstructed Maltose/Maltodextrin Pathway in Actinoplanes sp. SE50/110.
    Microorganisms 12(6): 1221.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [463]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2990736 OA
    Scales BS, Hassenrück C, Moldaenke L, Hassa J, Rückert-Reed C, Rummel C, Völkner C, Rynek R, Busche T, Kalinowski J, Jahnke A, Schmitt‐Jansen M, Wendt‐Potthoff K, Oberbeckmann S (2024)
    Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch.
    Environmental Microbiology 26(6).
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [462]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988657
    Lick S, Wibberg D, Busche T, Blom J, Grimmler C, Goesmann A, Kalinowski J (2024)
    Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breast.
    International Journal of Systematic and Evolutionary Microbiology 74(4).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [461]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986093
    Yushchuk O, Binda E, Rückert-Reed C, Berini F, Fedorenko V, Kalinowski J, Marinelli F (2024)
    Actinoplanes oblitus sp. nov., producing the glycopeptide antibiotic A477.
    International Journal of Systematic and Evolutionary Microbiology 74(1).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [460]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988965
    Liunardo JJ, Messerli S, Gregotsch A-K, Lang S, Schlosser K, Rückert-Reed C, Busche T, Kalinowski J, Zischka M, Weller P, Nouioui I, Neumann-Schaal M, Risdian C, Wink J, Mack M (2024)
    Isolation, characterisation and description of the roseoflavin producer <i>Streptomyces berlinensis</i> sp. nov.
    Environmental Microbiology Reports 16(2): e13266.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [459]
    2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988344
    Berckx F, Wibberg D, Brachmann A, Morrison C, Obaid NB, Blom J, Kalinowski J, Wall LG, Pawlowski K (2024)
    Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere.
    FEMS Microbiology Ecology: fiae042.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [458]
    2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988649
    Schmid N, Brandt D, Walasek C, Rolland C, Wittmann J, Fischer D, Müsken M, Kalinowski J, Thormann K (2024)
    An autonomous plasmid as an inovirus phage satellite.
    Applied and Environmental Microbiology : e0024624.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [457]
    2024 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2988475
    Cieslak C, Rückert-Reed C, Hain C, Busche T, Kalinowski J, Schaper-Gerhardt K, Gutzmer R, Stadler R (2024)
    Nanopore sequencing for T-cell receptor repertoire analysis in patients with cutaneous T-cell lymphoma.
    Experimental Dermatology 33(3): P100.
    PUB | DOI | WoS
     
  • [456]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986496
    Helm T, Stausberg T, Previati M, Ernst P, Klein B, Busche T, Kalinowski J, Wibberg D, Wiechert W, Claerhout L, Wierckx N, Noack S (2024)
    Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant Bioprocess.
    Microbial Cell Factories 23(1): 29.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [455]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986096
    Hamed MB, Busche T, Simoens K, Carpentier S, Kormanec J, Van Mellaert L, Anné J, Kalinowski J, Bernaerts K, Karamanou S, Economou A (2024)
    Enhanced protein secretion in reduced genome strains of Streptomyces lividans.
    Microbial Cell Factories 23(1): 13.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [454]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985929
    Cedeno-Sanchez M, Cheng T, Lambert C, Kolarík M, Kuhnert E, Cox RJ, Kalinowski J, Verwaaijen B, Stadler M (2024)
    Unraveling intragenomic polymorphisms in the high-quality genome of Hypoxylaceae: a comprehensive study of the rDNA cistron.
    Mycological Progress 23(1): 5.
    PUB | DOI | WoS
     
  • [453]
    2023 | Preprint | Veröffentlicht | PUB-ID: 2991402
    Oppel F, Gendreizig S, Martinez-Ruiz L, Florido J, López-Rodríguez A, Pabla H, Loganathan L, Hose L, Kühnel P, Schmidt P, Schürmann M, Neumann JM, Viyof Ful F, Scholtz L-U, Ligum D, Brasch F, Niehaus K, Escames G, Busche T, Kalinowski J, Goon P, Sudhoff H (2023)
    Inducible mucosa-like differentiation of head and neck cancer cells drives the epigenetically determined loss of cell malignancy.
    bioRxiv.
    PUB | DOI
     
  • [452]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2982191
    Stanelle-Bertram S, Beck S, Mounogou NK, Schaumburg B, Stoll F, Al Jawazneh A, Schmal Z, Bai T, Zickler M, Beythien G, Becker K, de la Roi M, Heinrich F, Schulz C, Sauter M, Krasemann S, Lange P, Heinemann A, van Riel D, Leijten L, Bauer L, van den Bosch TPP, Lopuhaä B, Busche T, Wibberg D, Schaudien D, Goldmann T, Lüttjohann A, Ruschinski J, Jania H, Müller Z, Pinho Dos Reis V, Krupp-Buzimkic V, Wolff M, Fallerini C, Baldassarri M, Furini S, Norwood K, Käufer C, Schützenmeister N, von Köckritz-Blickwede M, Schroeder M, Jarczak D, Nierhaus A, Welte T, Kluge S, McHardy AC, Sommer F, Kalinowski J, Krauss-Etschmann S, Richter F, von der Thüsen J, Baumgärtner W, Klingel K, Ondruschka B, Renieri A, Gabriel G (2023)
    CYP19A1 mediates severe SARS-CoV-2 disease outcome in males.
    Cell Reports Medicine 4(9): 101152.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [451]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980686 OA
    Werner F, Schwardmann L, Siebert D, Rückert-Reed C, Kalinowski J, Wirth M-T, Hofer K, Takors R, Wendisch VF, Blombach B (2023)
    Metabolic engineering of Corynebacterium glutamicum for fatty alcohol production from glucose and wheat straw hydrolysate.
    Biotechnology for Biofuels and Bioproducts 16: 116.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [450]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2981183 OA
    Bitzenhofer NL, Höfel C, Thies S, Weiler AJ, Eberlein C, Heipieper HJ, Batra-Safferling R, Sundermeyer P, Heidler T, Sachse C, Busche T, Kalinowski J, Belthle T, Drepper T, Jaeger K-E, Loeschcke A (2023)
    Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis.
    Microbial Biotechnology.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [449]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424 OA
    Schmidt P, Brandt D, Busche T, Kalinowski J (2023)
    Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE).
    Microorganisms 11(6): 1388.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [448]
    2023 | Preprint | Veröffentlicht | PUB-ID: 2987224
    Hain C, Stadler R, Kalinowski J (2023)
    Long-read sequencing shows complex structural variants in tumor-stage mycosis fungoides.
    bioRxiv.
    PUB | DOI | Preprint
     
  • [447]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985593
    Stegmüller J, Rodriguez Estevez M, Shu W, Gläser L, Myronovskyi M, Rückert-Reed C, Kalinowski J, Luzhetskyy A, Wittmann C (2023)
    Systems metabolic engineering of the primary and secondary metabolism of Streptomyces albidoflavus enhances production of the reverse antibiotic nybomycin against multi-resistant Staphylococcus aureus.
    Metabolic Engineering 81.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [446]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986284
    Sun Y, Gerke J, Becker K, Kuhnert E, Verwaaijen B, Wibberg D, Kalinowski J, Stadler M, Cox RJ (2023)
    Rapid discovery of terpene tailoring enzymes for total biosynthesis.
    Chemical Science 14(46): 13463-13467.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [445]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985583
    Breuer J, Busche T, Kalinowski J, Nowrousian M (2023)
    Histone binding of ASF1 is required for fruiting body development but not for genome stability in the filamentous fungus Sordaria macrospora.
    mBio: e0289623.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [444]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978776 OA
    Nölting S, März C, Jacob L, Persicke M, Schneiker-Bekel S, Kalinowski J (2023)
    The 4-alpha-Glucanotransferase AcbQ Is Involved in Acarbose Modification in Actinoplanes sp. SE50/110.
    Microorganisms 11(4): 848.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [443]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2977932 OA
    Kann S, Concha G, Weinreich F, Hahn A, Rückert C, Kalinowski J, Landt O, Frickmann H (2023)
    Comparative Assessment of Two Commercial Real-Time PCR Assays for the Diagnosis of Trypanosoma cruzi DNA in Serum.
    Microorganisms 11(4): 901.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [442]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985907
    Seo K, Shu W, Rückert-Reed C, Gerlinger P, Erb TJ, Kalinowski J, Wittmann C (2023)
    From waste to health-supporting molecules: biosynthesis of natural products from lignin-, plastic- and seaweed-based monomers using metabolically engineered <i>Streptomyces lividans</i>.
    Microbial Cell Factories 22(1): 262.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [441]
    2023 | Preprint | Veröffentlicht | PUB-ID: 2985153
    Peng F, Giacomelli G, Meyer F, Linder M, Haak M, Rückert-Reed C, Weiß M, Kalinowski J, Bramkamp M (2023)
    Deletion of SMC renders FtsK essential in .
    bioRxiv.
    PUB | DOI
     
  • [440]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984921
    Van Loi V, Busche T, Kuropka B, Müller S, Methling K, Lalk M, Kalinowski J, Antelmann H (2023)
    Staphylococcus aureus adapts to the immunometabolite itaconic acid by inducing acid and oxidative stress responses including S-bacillithiolations and S-itaconations.
    Free Radical Biology and Medicine 208: 859-876.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [439]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984747
    Eckert N, Rebets Y, Horbal L, Zapp J, Herrmann J, Busche T, Müller R, Kalinowski J, Luzhetskyy A (2023)
    Discovery and overproduction of novel highly bioactive pamamycins through transcriptional engineering of the biosynthetic gene cluster.
    Microbial Cell Factories 22(1): 233.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [438]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2984306
    Loi VV, Busche T, Schnaufer F, Kalinowski J, Antelmann H (2023)
    The neutrophil oxidant hypothiocyanous acid causes a thiol-specific stress response and an oxidative shift of the bacillithiol redox potential in Staphylococcus aureus.
    Microbiology Spectrum : e0325223.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [437]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984307
    Beganovic S, Rückert-Reed C, Sucipto H, Shu W, Gläser L, Patschkowski T, Struck B, Kalinowski J, Luzhetskyy A, Wittmann C (2023)
    Systems biology of industrial oxytetracycline production in Streptomyces rimosus: the secrets of a mutagenized hyperproducer.
    Microbial Cell Factories 22(1): 222.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [436]
    2023 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2984072
    Cieslak C, Rückert-Reed C, Busche T, Hain C, Kalinowski J, Schaper-Gerhardt K, Gutzmer R, Stadler R (2023)
    T-cell receptor clonality analyses using nanopore sequencing for cutaneous T-cell lymphoma.
    In: The Abstract from The EORTC Cutaneous Lymphoma Tumour Group Annual Meeting. European Journal of Cancer, 190. Oxford: Elsevier .
    PUB | DOI | WoS
     
  • [435]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983200
    Savin M, Hammerl JA, Hassa J, Hembach N, Kalinowski J, Schwartz T, Droop F, Mutters NT (2023)
    Free-floating extracellular DNA (exDNA) in different wastewaters: Status quo on exDNA-associated antimicrobial resistance genes.
    Environmental Pollution 337: 122560.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [434]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980373 OA
    Sagurna L, Heinrich S, Kaufmann L-S, Rückert-Reed C, Busche T, Wolf A, Eickhoff J, Klebl B, Kalinowski J, Bandow JE (2023)
    Characterization of the Antibacterial Activity of Quinone-Based Compounds Originating from the Alnumycin Biosynthetic Gene Cluster of a Streptomyces Isolate.
    Antibiotics 12(7): 1116.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [433]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2978071
    Siebert D, Busche T, Saydam E, Kalinowski J, Rückert-Reed C, Blombach B (2023)
    Complete Genome Sequence of the Carboxydotrophic Knallgas Bacterium Pseudomonas carboxydohydrogena Strain DSM 1083.
    Microbiology Resource Announcements.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [432]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967760
    Pheiffer F, Schneider YK-H, Hansen EH, Andersen JH, Isaksson J, Busche T, Rückert C, Kalinowski J, Zyl L van, Trindade M (2023)
    Bioassay-Guided Fractionation Leads to the Detection of Cholic Acid Generated by the Rare Thalassomonas sp.
    Marine Drugs 21(1): 2.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [431]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968186 OA
    Shao S, Scholtz L-U, Gendreizig S, Martínez-Ruiz L, Florido J, Escames G, Schürmann M, Hain C, Hose L, Mentz A, Schmidt P, Wang M, Goon P, Wehmeier M, Brasch F, Kalinowski J, Oppel F, Sudhoff H (2023)
    Primary head and neck cancer cell cultures are susceptible to proliferation of Epstein-Barr virus infected lymphocytes.
    BMC Cancer 23(1): 47.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [430]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963726 OA
    Maraci Ö, Antonatou-Papaioannou A, Jünemann S, Engel K, Castillo-Gutiérrez O, Busche T, Kalinowski J, Caspers B (2022)
    Timing matters: Age-dependent impacts of the social environment and host selection on the avian gut microbiota.
    Microbiome 10(1): 202.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [429]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965769 OA
    Hain C, Stadler R, Kalinowski J (2022)
    Unraveling the Structural Variations of Early-Stage Mycosis Fungoides—CD3 Based Purification and Third Generation Sequencing as Novel Tools for the Genomic Landscape in CTCL.
    Cancers 14(18): 4466.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [428]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959607
    Hain C, Stadler R, Kalinowski J (2022)
    Sezary syndrome shows whole genome duplication as a late event in tumor evolution.
    The Journal of investigative dermatology 142(6): 1755-1758.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [427]
    2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967517 OA
    Fritsch VN, Linzner N, Busche T, Said N, Weise C, Kalinowski J, Wahl MC, Antelmann H (2022)
    The MerR-family regulator NmlR is involved in the defense against oxidative stress in Streptococcus pneumoniae.
    Molecular Microbiology .
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [426]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966253 OA
    Shi Y-M, Crames JJ, Czech L, Bozhuyuk KAJ, Shi Y-N, Hirschmann M, Lamberth S, Claus P, Paczia N, Rückert-Reed C, Kalinowski J, Bange G, Bode HB (2022)
    Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate-Containing Natural Products in Diverse Bacteria.
    Angewandte Chemie International Edition 134(51).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [425]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969696 OA
    Busche T, Dostalova H, Rucka L, Holatko J, Barvik I, Stepanek V, Patek M, Kalinowski J (2022)
    Overlapping SigH and SigE sigma factor regulons in Corynebacterium glutamicum.
    Frontiers in Microbiology 13: 1059649.
    PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
     
  • [424]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968933
    Berckx F, Bandong CM, Wibberg D, Kalinowski J, Willemse J, Brachmann A, Simbahan J, Pawlowski K (2022)
    Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermedia.
    International Journal of Systematic and Evolutionary Microbiology 72(12).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [423]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965718
    Oppel F, Shao S, Gendreizig S, Kühnel P, Przybycin V, Hain C, Schmidt P, Schürmann M, Goon P, Niehaus K, Kalinowski J, Sudhoff H (2022)
    Head and neck cancer cells can differentiate and resemble their tissue of origin.
    In: Proceedings: AACR Annual Meeting 2022; April 8-13, 2022; New Orleans, LA. Cancer Research, 82. American Association for Cancer Research (AACR): 111-111.
    PUB | DOI | WoS
     
  • [422]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684 OA
    Behle A, Dietsch M, Goldschmidt L, Murugathas W, Berwanger LC, Burmester J, Yao L, Brandt D, Busche T, Kalinowski J, Hudson EP, Ebenhöh O, Axmann IM, Machné R (2022)
    Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in .
    Nucleic Acids Research: gkac1132.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [421]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624 OA
    Hertel O, Neuss A, Busche T, Brandt D, Kalinowski J, Bahnemann J, Noll T (2022)
    Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications.
    Frontiers in Bioengineering and Biotechnology 10.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [420]
    2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2967393
    Tseduliak V-M, Dolia B, Ostash I, Lopatniuk M, Busche T, Ochi K, Kalinowski J, Luzhetskyy A, Fedorenko V, Ostash B (2022)
    Mutations within gene XNR_2147 for TetR-like protein enhance lincomycin resistance and endogenous specialized metabolism of Streptomyces albus J1074.
    Journal of Applied Genetics.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [419]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2966971
    Hain C, Cieslak C, Stadler R, Kalinowski J (2022)
    Structural variations in low tumor fraction mycosis fungoides unraveled by nanopore sequencing.
    European Journal of Cancer 173(Suppl. 1): S31.
    PUB | DOI | WoS
     
  • [418]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966361
    Lale R, Tietze L, Fages-Lartaud M, Nesje J, Onsager I, Engelhardt K, Wong CFA, Akan M, Hummel N, Kalinowski J, Rückert C, Hohmann-Marriott MF (2022)
    A universal approach to gene expression engineering.
    Synthetic Biology 7(1): ysac017.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [417]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966354
    Riese CN, Wittchen M, Jerome V, Freitag R, Busche T, Kalinowski J, Schueler D (2022)
    The transcriptomic landscape of Magnetospirillum gryphiswaldense during magnetosome biomineralization.
    BMC Genomics 23(1): 699.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [416]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965159 OA
    Schafhauser T, Wibberg D, Binder A, Rückert C, Busche T, Wohlleben W, Kalinowski J (2022)
    Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602.
    Journal of Fungi 8(8): 862.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [415]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965777
    Cieslak C, Hain C, Rückert C, Klages LJ, Schaper-Ger-Hardt K, Kalinowski J, Gutzmer R (2022)
    Entwicklung eines Protokolls für die Bestimmung der T-Zell-Rezeptor-Klonalität auf Basis der Nanopore-DNA-Sequenzierung.
    In: Special Issue:Abstractband anlässlich des, 32. Deutschen Hautkrebskongresses (ADO-Jahrestagung), 14.–17. September 2022. Journal der Deutschen Dermatologischen Gesellschaft, 20. Hoboken: Wiley: 102.
    PUB | WoS
     
  • [414]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965454
    Berckx F, Nguyen TV, Bandong CM, Lin H-H, Yamanaka T, Katayama S, Wibberg D, Blom J, Kalinowski J, Tateno M, Simbahan J, Liu C-T, Brachmann A, Pawlowski K (2022)
    A tale of two lineages: how the strains of the earliest divergent symbiotic Frankia clade spread over the world.
    BMC Genomics 23(1): 602.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [413]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659
    Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
    psi-Footprinting approach for the identification of protein synthesis inhibitor producers.
    NAR: Genomics and Bioinformatics 4(3): lqac055.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [412]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961676 OA
    Ullmann L, Wibberg D, Busche T, Rückert C, Müsgens A, Kalinowski J, Blank LM (2022)
    Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis.
    Journal of Fungi 8(3): 269.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [411]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961099 OA
    Klaus T, Ninck S, Albersmeier A, Busche T, Wibberg D, Jiang J, Elcheninov AG, Zayulina KS, Kaschani F, Braesen C, Overkleeft HS, Kalinowski J, Kublanov IV, Kaiser M, Siebers B (2022)
    Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E.
    Frontiers in Microbiology 12: 734039.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [410]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952449 OA
    Witte KE, Hertel O, Windmöller BA, Helweg L, Höving AL, Knabbe C, Busche T, Greiner J, Kalinowski J, Noll T, Mertzlufft F, Beshay M, Pfitzenmaier J, Kaltschmidt B, Kaltschmidt C, Banz-Jansen C, Simonis M (2021)
    Nanopore Sequencing Reveals Global Transcriptome Signatures of Mitochondrial and Ribosomal Gene Expressions in Various Human Cancer Stem-like Cell Populations.
    Cancers 13(5): 1136.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [409]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952704 OA
    Berger C, Rückert C, Blom J, Rabaey K, Kalinowski J, Rosenbaum MA (2021)
    Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics.
    Scientific Reports 11(1): 1370.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [408]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954736 OA
    Keysberg C, Hertel O, Schelletter L, Busche T, Sochart C, Kalinowski J, Hoffrogge R, Otte K, Noll T (2021)
    Exploring the molecular content of CHO exosomes during bioprocessing.
    Applied Microbiology and Biotechnology 105(9): 3673-3689.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [407]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292 OA
    Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, Goesmann A, Sczyrba A, Kalinowski J, Bräutigam A, Kruse O (2021)
    Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia.
    Scientific Reports 11(1): 1726.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [406]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954272 OA
    Droste J, Rückert C, Kalinowski J, Hamed MB, Anné J, Simoens K, Bernaerts K, Economou A, Busche T (2021)
    Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome Information.
    Frontiers in Microbiology 12: 604034.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [405]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950415 OA
    Zanini S, Secic E, Busche T, Galli M, Zheng Y, Kalinowski J, Kogel K-H (2021)
    Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyon- Magnaporthe oryzae Pathosystems.
    International journal of molecular sciences 22(2): 650.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [404]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428 OA
    Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
    A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters.
    International journal of molecular sciences 22(14): 7567.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [403]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
    Brandt D, Simunovic M, Busche T, Haak M, Belmann P, Jünemann S, Schulz T, Klages LJ, Vinke S, Beckstette M, Pohl E, Scherer C, Sczyrba A, Kalinowski J (2021)
    Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines.
    Viruses 13(9): 1870.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [402]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960297 OA
    Linder M, Haak M, Botes  A, Kalinowski J, Rückert C (2021)
    Construction of an IS-Free Corynebacterium glutamicum ATCC 13 032 Chassis Strain and Random Mutagenesis Using the Endogenous ISCg1 Transposase.
    Frontiers in Bioengineering and Biotechnology 9: 751334.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [401]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958416 OA
    Luttermann T, Rückert C, Wibberg D, Busche T, Schwarzhans J-P, Friehs K, Kalinowski J (2021)
    Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeres.
    NAR Genomics and Bioinformatics 3(4): 13.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [400]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2959606
    Creutz I, Busche T, Layer F, Bednarz H, Kalinowski J, Niehaus K (2021)
    Evaluation of virulence potential of methicillin-sensitive and methicillin-resistant Staphylococcus aureus isolates from a German refugee cohort.
    Travel medicine and infectious disease: 102204.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [399]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955527
    Hrab P, Rückert C, Busche T, Ostash I, Kalinowski J, Fedorenko V, Yushchuk O, Ostash B (2021)
    Complete genome sequence of Streptomyces cyanogenus S136, producer of anticancer angucycline landomycin A.
    3 Biotech 11(6): 282 .
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [398]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2958743
    Van Loi V, Busche T, Fritsch VN, Weise C, Gruhlke MCH, Slusarenko AJ, Kalinowski J, Antelmann H (2021)
    The two-Cys-type TetR repressor GbaA confers resistance under disulfide and electrophile stress in Staphylococcus aureus.
    Free Radical Biology and Medicine 177: 120-131.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [397]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959487
    Dziuba M, Riese CN, Borgert L, Wittchen M, Busche T, Kalinowski J, Uebe R, Schueler D (2021)
    The Complex Transcriptional Landscape of Magnetosome Gene Clusters in Magnetospirillum gryphiswaldense.
    mSystems 6(5): e00893-21.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [396]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958745 OA
    Brodehl A, Hain C, Flottmann F, Ratnavadivel S, Gaertner A, Klauke B, Kalinowski J, Korperich H, Gummert J, Paluszkiewicz L, Deutsch M-A, Milting H (2021)
    The Desmin Mutation DES-c.735G>C Causes Severe Restrictive Cardiomyopathy by Inducing In-Frame Skipping of Exon-3.
    Biomedicines 9(10): 1400.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [395]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958734
    Patenge N, Rückert C, Bull J, Strey K, Kalinowski J, Kreikemeyer B (2021)
    Whole-Genome Sequence of Streptococcus pyogenes Strain 591, Belonging to the Genotype emm49.
    Microbiology Resource Announcements 10(43): e0081621.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [394]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2957511
    Novakova R, Rückert C, Knirschova R, Feckova L, Busche T, Csolleiova D, Homerova D, Rezuchova B, Javorova R, Sevcikova B, Kalinowski J, Kormanec J (2021)
    The linear plasmid pSA3239 is essential for the replication of the Streptomyces lavendulae subsp. lavendulae CCM 3239 chromosome.
    Research in microbiology: 103870.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [393]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957898
    Fulde M, van Vorst K, Zhang K, Westermann AJ, Busche T, Huei YC, Welitschanski K, Froh I, Pagelow D, Plendl J, Pfarrer C, Kalinowski J, Vogel J, Valentin-Weigand P, Hensel M, Tedin K, Repnik U, Hornef MW (2021)
    SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivo.
    Gut microbes 13(1): 1973836.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [392]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955515
    Scales BS, Cable RN, Duhaime MB, Gerdts G, Fischer F, Fischer D, Mothes S, Hintzki L, Moldaenke L, Ruwe M, Kalinowski J, Kreikemeyer B, Pedrotti M-L, Gorsky G, Elineau A, Labrenz M, Oberbeckmann S (2021)
    Cross-Hemisphere Study Reveals Geographically Ubiquitous, Plastic-Specific Bacteria Emerging from the Rare and Unexplored Biosphere.
    mSphere 6(3): e00851-20.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [391]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956157
    Sekurova ON, Sun Y-Q, Zehl M, Rückert C, Stich A, Busche T, Kalinowski J, Zotchev SB (2021)
    Coupling of the engineered DNA "mutator" to a biosensor as a new paradigm for activation of silent biosynthetic gene clusters in Streptomyces.
    Nucleic acids research: gkab583.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [390]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358
    Lichtenstein D, Mentz A, Sprenger H, Schmidt FF, Albaum S, Kalinowski J, Planatscher H, Joos TO, Poetz O, Braeuning A (2021)
    A targeted transcriptomics approach for the determination of mixture effects of pesticides.
    Toxicology 460: 152892.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [389]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957237
    Secic E, Zanini S, Wibberg D, Jelonek L, Busche T, Kalinowski J, Nasfi S, Thielmann J, Imani J, Steinbrenner J, Kogel K-H (2021)
    A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis.
    BMC Biology 19(1): 171 .
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [388]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957069
    Schmidt FF, Lichtenstein D, Planatscher H, Mentz A, Kalinowski J, Steinhilber AE, Joos TO, Braeuning A, Poetz O (2021)
    Pesticide mixture effects on liver protein abundance in HepaRG cells.
    Toxicology 458: 152839.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [387]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957077
    Lichtenstein D, Lasch A, Alarcan J, Mentz A, Kalinowski J, Schmidt FF, Poetz O, Marx-Stoelting P, Braeuning A (2021)
    An eight-compound mixture but not corresponding concentrations of individual chemicals induces triglyceride accumulation in human liver cells.
    Toxicology 459: 152857.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [386]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956918 OA
    Faßhauer P, Busche T, Kalinowski J, Mäder U, Poehlein A, Daniel R, Stülke J (2021)
    Functional Redundancy and Specialization of the Conserved Cold Shock Proteins in Bacillus subtilis.
    Microorganisms 9(7): 1434.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [385]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951544
    Yushchuk O, Ostash I, Mosker E, Vlasiuk I, Deneka M, Rückert C, Busche T, Fedorenko V, Kalinowski J, Sussmuth RD, Ostash B (2021)
    Eliciting the silent lucensomycin biosynthetic pathway in Streptomyces cyanogenus S136 via manipulation of the global regulatory gene adpA.
    Scientific reports 11(1): 3507.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [384]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512
    Aevarsson A, Kaczorowska A-K, Adalsteinsson BT, Ahlqvist J, Al-Karadaghi S, Altenbuchner J, Arsin H, Atlasson UA, Brandt D, Cichowicz-Cieslak M, Cornish KAS, Courtin J, Dabrowski S, Dahle H, Djeffane S, Dorawa S, Dusaucy J, Enault F, Fedoy A-E, Freitag-Pohl S, Fridjonsson OH, Galiez C, Glomsaker E, Guerin M, Gundeso SE, Gudmundsdottir EE, Gudmundsson H, Hakansson M, Henke C, Helleux A, Henriksen JR, Hjorleifdottir S, Hreggvidsson GO, Jasilionis A, Jochheim A, Jonsdottir I, Jonsdottir LB, Jurczak-Kurek A, Kaczorowski T, Kalinowski J, Kozlowski LP, Krupovic M, Kwiatkowska-Semrau K, Lanes O, Lange J, Lebrat J, Linares-Pasten J, Liu Y, Lorentsen SA, Luttermann T, Mas T, Merre W, Mirdita M, Morzywolek A, Ndela EO, Karlsson EN, Olgudottir E, Pedersen C, Perler F, Petursdottir SK, Plotka M, Pohl E, Prangishvili D, Ray JL, Reynisson B, Robertsdottir T, Sandaa R-A, Sczyrba A, Skirnisdottir S, Soding J, Solstad T, Steen IH, Stefansson SK, Steinegger M, Overa KS, Striberny B, Svensson A, Szadkowska M, Tarrant EJ, Terzian P, Tourigny M, van den Bergh T, Vanhalst J, Vincent J, Vroling B, Walse B, Wang L, Watzlawick H, Welin M, Werbowy O, Wons E, Zhang R (2021)
    Going to extremes - a metagenomic journey into the dark matter of life.
    FEMS microbiology letters: fnab067.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [383]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159
    Medvedeva S, Brandt D, Cvirkaite-Krupovic V, Liu Y, Severinov K, Ishino S, Ishino Y, Prangishvili D, Kalinowski J, Krupovic M (Accepted)
    New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae.
    Environmental microbiology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [382]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919
    Schmitz LM, Hageneier F, Rosenthal K, Busche T, Brandt D, Kalinowski J, Lutz S (2021)
    Recombinant expression and characterization of novel P450s from Actinosynnema mirum.
    Bioorganic & medicinal chemistry 42: 116241.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [381]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955521
    Glaser L, Kuhl M, Stegmuller J, Rückert C, Myronovskyi M, Kalinowski J, Luzhetskyy A, Wittmann C (2021)
    Superior production of heavy pamamycin derivatives using a bkdR deletion mutant of Streptomyces albus J1074/R2.
    Microbial cell factories 20(1): 111 .
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [380]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526
    Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
    Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.
    International journal of systematic and evolutionary microbiology 71(6).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [379]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2954380
    Yushchuk O, Vior NM, Andreo-Vidal A, Berini F, Rückert C, Busche T, Binda E, Kalinowski J, Truman AW, Marinelli F (2021)
    Genomic-Led Discovery of a Novel Glycopeptide Antibiotic by Nonomuraea coxensis DSM 45129.
    ACS chemical biology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [378]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2952997
    Benninghoff JC, Kuschmierz L, Zhou X, Albersmeier A, Pham TK, Busche T, Wright PC, Kalinowski J, Makarova KS, Brasen C, Flemming H-C, Wingender J, Siebers B (2021)
    Response of the thermoacidophilic Archaeon Sulfolobus acidocaldarius to solvent stress exemplified by 1-butanol exposure.
    Applied and environmental microbiology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [377]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954831
    Kuhl M, Rückert C, Glaser L, Beganovic S, Luzhetskyy A, Kalinowski J, Wittmann C (Accepted)
    Microparticles enhance the formation of seven major classes of natural products in native and metabolically engineered actinobacteria through accelerated morphological development.
    Biotechnology and bioengineering.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [376]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954389
    Oberbeckmann S, Bartosik D, Huang S, Werner J, Hirschfeld C, Wibberg D, Heiden SE, Bunk B, Overmann J, Becher D, Kalinowski J, Schweder T, Labrenz M, Markert S (Accepted)
    Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties.
    Environmental microbiology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [375]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146
    Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
    Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha.
    International journal of systematic and evolutionary microbiology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [374]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141
    Blanc-Mathieu R, Dahle H, Hofgaard A, Brandt D, Ban H, Kalinowski J, Ogata H, Sandaa R-A (2021)
    A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism.
    Journal of virology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [373]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951630 OA
    Maraci Ö, Antonatou-Papaioannou A, Jünemann S, Castillo O, Busche T, Kalinowski J, Caspers B (2021)
    The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch.
    Frontiers in Microbiology 12: 619141.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [372]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952703
    Zwiener T, Mickoleit F, Dziuba M, Rückert C, Busche T, Kalinowski J, Faivre D, Uebe R, Schüler D (2021)
    Identification and elimination of genomic regions irrelevant for magnetosome biosynthesis by large-scale deletion in Magnetospirillum gryphiswaldense.
    BMC Microbiology 21(1): 65.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [371]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952132
    Zwiener T, Dziuba M, Mickoleit F, Rückert C, Busche T, Kalinowski J, Uebe R, Schueler D (2021)
    Towards a 'chassis' for bacterial magnetosome biosynthesis: genome streamlining of Magnetospirillum gryphiswaldense by multiple deletions.
    Microbial Cell Factories 20(1): 35.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [370]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951159 OA
    Wolf J, Koblitz J, Albersmeier A, Kalinowski J, Siebers B, Schomburg D, Neumann-Schaal M (2021)
    Utilization of Phenol as Carbon Source by the Thermoacidophilic Archaeon Saccharolobus solfataricus P2 Is Limited by Oxygen Supply and the Cellular Stress Response.
    Frontiers in Microbiology 11: 587032.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [369]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
    Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, Pistorio M (2021)
    Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress.
    FEMS Microbiology Ecology 97(1): fiaa235.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [368]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941608 OA
    Stadler M, Lambert C, Wibberg D, Kalinowski J, Cox RJ, Kolarik M, Kuhnert E (2020)
    Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota).
    MYCOLOGICAL PROGRESS 19(3): 235-245.
    PUB | PDF | DOI | WoS
     
  • [367]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943800 OA
    Wibberg D, Stadler M, Lambert C, Bunk B, Sproer C, Rückert C, Kalinowski J, Cox RJ, Kuhnert E (2020)
    High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa.
    FUNGAL DIVERSITY.
    PUB | PDF | DOI | WoS
     
  • [366]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978170
    Shtenikov MD, Ostapchuk AM, Vasylieva NY, Luzhetskyy AM, Rückert C, Kalinowski J, Ivanytsia VO (2020)
    Characteristics of Genome of Bacillus velezensis ONU 553 Strain Isolated from the Bottom Sediments of the Black Sea.
    Mikrobiolohichnyi Zhurnal = Microbiological Journal 82(3): 14-21.
    PUB | DOI | Download (ext.)
     
  • [365]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946320 OA
    Droste J, Kulisch M, Wolf T, Schaffert L, Schneiker-Bekel S, Pühler A, Kalinowski J (2020)
    A maltose-regulated large genomic region is activated by the transcriptional regulator MalT in Actinoplanes sp. SE50/110.
    Applied microbiology and biotechnology 104: 9283–9294.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [364]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949440 OA
    Braun R, Schönberger N, Vinke S, Lederer F, Kalinowski J, Pollmann K (2020)
    Application of Next Generation Sequencing (NGS) in Phage Displayed Peptide Selection to Support the Identification of Arsenic-Binding Motifs.
    Viruses 12(12): 1360.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [363]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260 OA
    Radukic M, Brandt D, Haak M, Müller K, Kalinowski J (2020)
    Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol.
    NAR Genomics and Bioinformatics 2(4): lqaa074.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [362]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267
    Schulte-Schrepping J, Reusch N, Paclik D, Baßler K, Schlickeiser S, Zhang B, Krämer B, Krammer T, Brumhard S, Bonaguro L, De Domenico E, Wendisch D, Grasshoff M, Kapellos TS, Beckstette M, Pecht T, Saglam A, Dietrich O, Mei HE, Schulz AR, Conrad C, Kunkel D, Vafadarnejad E, Xu C-J, Horne A, Herbert M, Drews A, Thibeault C, Pfeiffer M, Hippenstiel S, Hocke A, Müller-Redetzky H, Heim K-M, Machleidt F, Uhrig A, Bosquillon de Jarcy L, Jürgens L, Stegemann M, Glösenkamp CR, Volk H-D, Goffinet C, Landthaler M, Wyler E, Georg P, Schneider M, Dang-Heine C, Neuwinger N, Kappert K, Tauber R, Corman V, Raabe J, Kaiser KM, Vinh MT, Rieke G, Meisel C, Ulas T, Becker M, Geffers R, Witzenrath M, Drosten C, Suttorp N, von Kalle C, Kurth F, Händler K, Schultze JL, Aschenbrenner AC, Li Y, Nattermann J, Sawitzki B, Saliba A-E, Sander LE, Angelov A, Bals R, Bartholomäus A, Becker A, Bezdan D, Bonifacio E, Bork P, Clavel T, Colome-Tatche M, Diefenbach A, Dilthey A, Fischer N, Förstner K, Frick J-S, Gagneur J, Goesmann A, Hain T, Hummel M, Janssen S, Kalinowski J, Kallies R, Kehr B, Keller A, Kim-Hellmuth S, Klein C, Kohlbacher O, Korbel JO, Kurth I, Landthaler M, Li Y, Ludwig K, Makarewicz O, Marz M, McHardy A, Mertes C, Nöthen M, Nürnberg P, Ohler U, Ossowski S, Overmann J, Peter S, Pfeffer K, Poetsch AR, Pühler A, Rajewsky N, Ralser M, Rieß O, Ripke S, Nunes da Rocha U, Rosenstiel P, Saliba A-E, Sander LE, Sawitzki B, Schiffer P, Schulte E-C, Schultze JL, Sczyrba A, Stegle O, Stoye J, Theis F, Vehreschild J, Vogel J, von Kleist M, Walker A, Walter J, Wieczorek D, Ziebuhr J (2020)
    Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
    Cell 182(6): 1419-1440.e23.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [361]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949051 OA
    Engel K, Pankoke H, Jünemann S, Brandl HB, Sauer J, Griffith S, Kalinowski J, Caspers B (2020)
    Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches.
    BMC Ecology 20(1): 58.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [360]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950214
    Tian D-S, Kuhnert E, Ouazzani J, Wibberg D, Kalinowski J, Cox RJ (2020)
    The sporothriolides. A new biosynthetic family of fungal secondary metabolites.
    Chemical Science 11(46): 12477-12484.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [359]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948760
    Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, Lagares A, Torres Tejerizo GA, Del Papa MF (2020)
    Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation.
    Gene.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [358]
    2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2948421
    Bleichert P, Butof L, Rückert C, Herzberg M, Francisco R, Morais PV, Grass G, Kalinowski J, Nies DH (Accepted)
    Generation and analysis of mutant strains of Escherichia coli and methicillin-resistant Staphylococcus aureus obtained by laboratory selection to survive on metallic copper surfaces.
    Applied and environmental microbiology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [357]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949422
    Guerrero-Garzon JF, Madland E, Zehl M, Singh M, Rezaei S, Aachmann FL, Courtade G, Urban E, Rückert C, Busche T, Kalinowski J, Cao Y-R, Jiang Y, Jiang C-L, Selivanova G, Zotchev SB (2020)
    Class IV Lasso Peptides Synergistically Induce Proliferation of Cancer Cells and Sensitize Them to Doxorubicin.
    iScience 23(12): 101785.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [356]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242
    Lichtenstein D, Mentz A, Schmidt FF, Luckert C, Buhrke T, Marx-Stoelting P, Kalinowski J, Albaum S, Joos TO, Poetz O, Braeuning A (2020)
    Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells.
    Food and Chemical Toxicology 145: 111690.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [355]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948756
    Fritsch VN, Loi VV, Busche T, Tung QN, Lill R, Horvatek P, Wolz C, Kalinowski J, Antelmann H (2020)
    The alarmone (p)ppGpp confers tolerance to oxidative stress during the stationary phase by maintenance of redox and iron homeostasis in Staphylococcus aureus.
    Free radical biology & medicine.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [354]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948762 OA
    Graf M, Haas T, Teleki A, Feith A, Cerff M, Wiechert W, Nöh K, Busche T, Kalinowski J, Takors R (2020)
    Revisiting the Growth Modulon of Corynebacterium glutamicum Under Glucose Limited Chemostat Conditions.
    Frontiers in Bioengineering and Biotechnology 8: 584614.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [353]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945521 OA
    Kuhl M, Gläser L, Rebets Y, Rückert C, Sarkar N, Hartsch T, Kalinowski J, Luzhetskyy A, Wittmann C (2020)
    Microparticles globally reprogram Streptomyces albus toward accelerated morphogenesis, streamlined carbon core metabolism and enhanced production of the antituberculosis polyketide pamamycin.
    Biotechnology and Bioengineering.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [352]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945474 OA
    Hemmerich J, Labib M, Steffens C, Reich SJ, Weiske M, Baumgart M, Rückert C, Ruwe M, Siebert D, Wendisch VF, Kalinowski J, Wiechert W, Oldiges M (2020)
    Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretion.
    Microbial Biotechnology 13(6): 2020-2031.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [351]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949080 OA
    Droste J, Ortseifen V, Schaffert L, Persicke M, Schneiker-Bekel S, Pühler A, Kalinowski J (2020)
    The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase.
    BMC genomics 21: 818.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [350]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946157 OA
    Schaffert L, Jacob L, Schneiker-Bekel S, Persicke M, März C, Rückert C, Pühler A, Kalinowski J (2020)
    pSETT4, an Improved φC31-Based Integrative Vector System for Actinoplanes sp. SE50/110.
    Microbiology Resource Announcements 9(39): e00596-20.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [349]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948423
    Herrera-Belaroussi A, Normand P, Pawlowski K, Fernandez MP, Wibberg D, Kalinowski J, Brachmann A, Berckx F, Lee N, Blom J, Pozzi AC, Fournier P, Bethencourt L, Dubost A, Abrouk D, Sellstedt A (2020)
    Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-planta.
    Systematic and applied microbiology 43(6): 126134.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [348]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942701
    Rust M, Helfrich EJN, Freeman MF, Nanudorn P, Field CM, Rückert C, Kundig T, Page MJ, Webb VL, Kalinowski J, Sunagawa S, Piel J (2020)
    A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli.
    Proceedings of the National Academy of Sciences of the United States of America 117(17): 9508-9518.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [347]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945458
    Allers K, Stahl-Hennig C, Fiedler T, Wibberg D, Hofmann J, Kunkel D, Moos V, Kreikemeyer B, Kalinowski J, Schneider T (2020)
    The colonic mucosa-associated microbiome in SIV infection: shift towards Bacteroidetes coincides with mucosal CD4(+) T cell depletion and enterocyte damage.
    SCIENTIFIC REPORTS 10(1).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [346]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945532
    Bekiesch P, Zehl M, Domingo-Contreras E, Martin J, Perez-Victoria I, Reyes F, Kaplan A, Rückert C, Busche T, Kalinowski J, Zotchev SB (2020)
    Viennamycins: Lipopeptides Produced by a Streptomyces sp.
    Journal of natural products 83(8): 2381–2389.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [345]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945782
    Franco A, Rückert C, Blom J, Busche T, Reichert J, Schubert P, Goesmann A, Kalinowski J, Wilke T, Kampfer P, Glaeser SP (2020)
    High diversity of Vibrio spp. associated with different ecological niches in a marine aquaria system and description of Vibrio aquimaris sp. nov.
    Systematic and applied microbiology 43(5): 126123.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [344]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299 OA
    Kreienbaum M, Dörrich AK, Brandt D, Schmid NE, Leonhard T, Hager F, Brenzinger S, Hahn J, Glatter T, Ruwe M, Briegel A, Kalinowski J, Thormann KM (2020)
    Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm Formation.
    Frontiers in Microbiology 11: 573260.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [343]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945214
    Linzner N, Fritsch VN, Busche T, Tung QN, Loi VV, Bernhardt J, Kalinowski J, Antelmann H (2020)
    The plant-derived naphthoquinone lapachol causes an oxidative stress response in Staphylococcus aureus.
    Free radical biology & medicine 158: 126-136.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [342]
    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2945465
    Schmidt F, Planatscher H, Lichtenstein D, Mentz A, Kalinowski J, Joos T, Braeuning A, Poetz O (2020)
    DETERMINATION OF ADDITIVE, SYNERGISTIC AND ANTAGONISTIC EFFECTS BY THE ANALYSES OF PROTEIN MARKERS IN PESTICIDE MIXTURE-TREATED HEPARG-CELLS.
    In: DRUG METABOLISM AND PHARMACOKINETICS. 35. Tokyo: Japanese Soc Study Xenobiotics: S50.
    PUB | WoS
     
  • [341]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944774
    Siebert D, Busche T, Metz AY, Smaili M, Queck BAW, Kalinowski J, Eikmanns BJ (2020)
    Genetic Engineering of Oligotropha carboxidovorans Strain OM5-A Promising Candidate for the Aerobic Utilization of Synthesis Gas.
    ACS SYNTHETIC BIOLOGY 9(6): 1426-1440.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [340]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942996 OA
    Schaffert L, Schneiker-Bekel S, Gierhake J, Droste J, Persicke M, Rosen W, Pühler A, Kalinowski J (2020)
    Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110.
    Applied Microbiology and Biotechnology 104: 5395–5408.
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [339]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2943712
    Kissling L, Schneider C, Seibel K, Dorjjugder N, Busche T, Kalinowski J, Mack M (2020)
    The roseoflavin producer Streptomyces davaonensis has a high catalytic capacity and specific genetic adaptations with regard to the biosynthesis of riboflavin.
    Environmental microbiology.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [338]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943414 OA
    Voitsekhovskaia I, Paulus C, Dahlem C, Rebets Y, Nadmid S, Zapp J, Axenov-Gribanov D, Rückert C, Timofeyev M, Kalinowski J, Kiemer AK, Luzhetskyy A (2020)
    Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived Streptomyces sp. IB201691-2A.
    Microorganisms 8(5): 680.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [337]
    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812
    Radukic M, Brandt D, Haak M, Kalinowski J, Müller K (2020)
    Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids.
    In: MOLECULAR THERAPY. 28. Cambridge: Cell Press: 398-399.
    PUB | WoS
     
  • [336]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943125 OA
    Berckx F, Wibberg D, Kalinowski J, Pawlowski K (2020)
    The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type.
    Genes 11(4).
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [335]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386
    Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski J (2020)
    Pseudomonas carnis sp. nov., isolated from meat.
    International journal of systematic and evolutionary microbiology 70(3): 1528-1540.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [334]
    2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942457 OA
    Guerrero-Garzón JF, Zehl M, Schneider O, Rückert C, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2020)
    Streptomyces spp. From the Marine Sponge Antho dichotoma: Analyses of Secondary Metabolite Biosynthesis Gene Clusters and Some of Their Products.
    Frontiers in Microbiology 11: 437.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [333]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248
    Braeuning A, Mentz A, Schmidt FF, Albaum S, Planatscher H, Kalinowski J, Joos TO, Poetz O, Lichtenstein D (2020)
    RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS.
    EXCLI JOURNAL 19: 135-153.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [332]
    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941899
    Rust M, Helfrich EJN, Freeman MF, Nanudorn P, Field C, Rückert C, Page MJ, Webb VL, Kalinowski J, Sunagawa S, Piel J (2020)
    A Multi-Producer Microbiome Creates Chemical Diversity in the Marine Sponge Mycale hentscheli.
    In: MARINE DRUGS. 18. Basel: Mdpi.
    PUB | WoS
     
  • [331]
    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941898
    Cahn JKB, Peters EE, Lotti A, Field C, Rückert C, Kalinowski J, Sunagawa S, Takeyama H, Piel J (2020)
    The Evolutionary Profile of a Superproducer Sponge Symbiont, Candidatus "Entheonella".
    In: MARINE DRUGS. 18. Basel: Mdpi.
    PUB | WoS
     
  • [330]
    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2941893
    Schmidt F, Steinhilber A, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Joos T, Poetz O (2020)
    Mixture effects on toxicologically relevant liver proteins after pesticide treatment in hepaRG cells.
    In: NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY. 393. New york: Springer: 15.
    PUB | WoS
     
  • [329]
    2019 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2934136
    Braeuning A, Lichtenstein D, Mentz A, Kalinowski J, Schmidt F, Poetz O, Lampen A (2019)
    A targeted transcriptomic and proteomic approach to assess hepatotoxic mixture effects in vitro.
    Naunyn-Schmiedeberg's Archives of Pharmacology 392(S1): S76-S77.
    PUB | WoS
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934273 OA
    Gräwe A, Dreyer A, Vornholt T, Barteczko U, Buchholz L, Drews G, Ho UL, Jackowski ME, Kracht M, Lüders J, Bleckwehl T, Rositzka L, Ruwe M, Wittchen M, Lutter P, Müller K, Kalinowski J (2019)
    A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.
    PloS one 14(3): e0210940.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [327]
    2019 | Preprint | Unveröffentlicht | PUB-ID: 2949925
    Lale R, Tietze L, Nesje J, Onsager I, Engelhardt K, Wong CFA, Akan M, Hummel N, Kalinowski J, Rückert C, Hohmann-Marriott MF (Unpublished)
    A universal method for gene expression engineering.
    bioRxiv.
    PUB | DOI
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580
    Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L (2019)
    Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase.
    CHEMICAL SCIENCE 10(16): 4486-4490.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490
    Seeger B, Mentz A, Knebel C, Schmidt F, Bednarz H, Niehaus K, Albaum S, Kalinowski J, Noll T, Steinberg P, Marx-Stoelting P, Heise T (2019)
    Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.
    Archives of toxicology 93(8): 2321-2333.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518
    Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum S, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers S-V (2019)
    Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.
    FRONTIERS IN MICROBIOLOGY 9: 3201.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [323]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935870
    Haas T, Graf M, Niess A, Busche T, Kalinowski J, Blombach B, Takors R (2019)
    Identifying the Growth Modulon of Corynebacterium glutamicum.
    FRONTIERS IN MICROBIOLOGY 10: 974.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936724
    Fritsch VN, Loi VV, Busche T, Sommer A, Tedin K, Nurnberg DJ, Kalinowski J, Bernhardt J, Fulde M, Antelmann H (2019)
    The MarR-type repressor MhqR confers quinone and antimicrobial resistance in <i>Staphylococcus aureus</i>.
    Antioxidants & redox signaling 31(16): 1235-1252.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [321]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907
    Brandt C, Viehweger A, Singh A, Pletz MW, Wibberg D, Kalinowski J, Lerch S, Muller B, Makarewicz O (2019)
    Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.
    Scientific reports 9(1): 11223.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910
    Nguyen TV, Wibberg D, Vigil-Stenman T, Berckx F, Battenberg K, Demchenko KN, Blom J, Fernandez MP, Yamanaka T, Berry AM, Kalinowski J, Brachmann A, Pawlowski K (2019)
    Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams.
    Genome biology and evolution 11(8): 2273–2291.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [319]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
    Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
    Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia.
    Microbiology resource announcements 8(34): e00477-19.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936922
    Graf M, Haas T, Mueller F, Buchmann A, Harm-Bekbenbetova J, Freund A, Niess A, Persicke M, Kalinowski J, Blombach B, Takors R (2019)
    Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate.
    Frontiers in Microbiology 10: 1648.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [317]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936019
    Huennefeld M, Persicke M, Kalinowski J, Frunzke J (2019)
    The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum.
    FRONTIERS IN MICROBIOLOGY 10: 1039.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933296
    Dostalova H, Busche T, Holatko J, Rucka L, Stepanek V, Barvik I, Nesvera J, Kalinowski J, Patek M (2019)
    Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032.
    FRONTIERS IN MICROBIOLOGY 9(50): 3287.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [315]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933348
    Jahanshah G, Miess H, Busche T, Rückert C, Kalinowski J, Rokni-Zadeh H, Gross H (2019)
    Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran.
    Microbiology resource announcements 8(2): e01375-18.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [314]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936260
    Arenas-Lopez C, Locker J, Orol D, Walter F, Busche T, Kalinowski J, Minton NP, Kovacs K, Winzer K (2019)
    The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16.
    Biotechnology for biofuels 12(1): 150.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [313]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939523 OA
    Ruwe M, Persicke M, Busche T, Müller B, Kalinowski J (2019)
    Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicum.
    Frontiers in Microbiology 10: 2769.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
    Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
    Pseudomonas bubulae sp. nov., isolated from beef.
    International journal of systematic and evolutionary microbiology 70(1): 292-301.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [311]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 OA
    Schaffert L, Schneiker-Bekel S, Dymek S, Droste J, Persicke M, Busche T, Brandt D, Pühler A, Kalinowski J (2019)
    Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110.
    Frontiers in Microbiology 10: 2448.
    PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
     
  • [310]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936723
    Lopatniuk M, Myronovskyi M, Nottebrock A, Busche T, Kalinowski J, Ostash B, Fedorenko V, Luzhetskyy A (2019)
    Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites.
    Applied microbiology and biotechnology 103(17): 7097–7110.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936726
    Grenz S, Baumann PT, Rückert C, Nebel BA, Siebert D, Schwentner A, Eikmanns BJ, Hauer B, Kalinowski J, Takors R, Blombach B (2019)
    Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals.
    Metabolic engineering 55: 220-230.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
    Schaffert L, März C, Burkhardt L, Droste J, Brandt D, Busche T, Rosen W, Schneiker-Bekel S, Persicke M, Pühler A, Kalinowski J (2019)
    Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110.
    Microbial Cell Factories 18(1): 114.
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934794
    Farr M, Ferreira S, Al-Dilaimi A, Bogeholz S, Goesmann A, Kalinowski J, Knabbe C, Faber L, Oliveira JP, Rudolph V (2019)
    Fabry disease: Detection of Alu-mediated exon duplication by NGS.
    Molecular and cellular probes 45: 79-83.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [306]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937135 OA
    Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B (2019)
    Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome.
    Genes 10(9): 671.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937344
    Rebets Y, Nadmid S, Paulus C, Dahlem C, Herrmann J, Huebner H, Rückert C, Kiemer AK, Gmeiner P, Kalinowski J, Mueller R, Luzhetskyy A (2019)
    Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis.
    Angewandte Chemie International Edition 58(37): 12930-12934.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [304]
    2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936603
    Quehenberger J, Albersmeier A, Glatzel H, Hackl M, Kalinowski J, Spadiut O (2019)
    A defined cultivation medium for Sulfolobus acidocaldarius.
    JOURNAL OF BIOTECHNOLOGY 301: 56-67.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [303]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935892
    Loi VV, Huyen NTT, Busche T, Tung QN, Gruhlke MCH, Kalinowski J, Bernhardt J, Slusarenko AJ, Antelmann H (2019)
    Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress.
    Free radical biology & medicine 139: 55-69.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936033
    Tsolis KC, Hamed MB, Simoens K, Koepff J, Busche T, Rückert C, Oldiges M, Kalinowski J, Anne J, Kormanec J, Bernaerts K, Karamanou S, Economou A (2019)
    Secretome Dynamics in a Gram-Positive Bacterial Model.
    MOLECULAR & CELLULAR PROTEOMICS 18(3): 423-436.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [301]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936035
    Koshla OT, Rokytskyy IV, Ostash IS, Busche T, Kalinowski J, Moesker E, Suessmuth RD, Fedorenko VO, Ostash BO (2019)
    Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2.
    CYTOLOGY AND GENETICS 53(1): 1-7.
    PUB | DOI | WoS
     
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    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934613
    Hain C, Cieslak C, Mentz A, Stranzenbach R, Kalinowski J, Stadler R (2019)
    Molekulare Diagnostik bei kutanen T-Zell Lymphomen – Identifizierung neuer potentiell therapierelevanter Biomarke.
    JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT 17(Suppl. 1): 1.
    PUB | DOI | WoS
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930296 OA
    Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J (2018)
    Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.
    Journal of Biological Engineering 12(1): 13.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [298]
    2018 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2978171
    Grenz S, Baumann P, Nebel B, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
    Aerobe Produktion von Isoprenoiden aus Synthesegas mit DSM1084.
    In: Chemie Ingenieur Technik. 90. Wiley-VCH: 1254.
    PUB | DOI | Download (ext.)
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984 OA
    Neubauer P, Widmann C, Wibberg D, Schröder L, Frese M, Kottke T, Kalinowski J, Niemann H, Sewald N (2018)
    A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
    PLoS ONE 13(5): e0196797.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [296]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931971
    Ganschow S, Silvery J, Kalinowski J, Tiemann C (2018)
    toaSTR: A web application for forensic STR genotyping by massively parallel sequencing.
    Forensic Science International: Genetics 37: 21-28.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [295]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932963
    Schneider O, Simic N, Aachmann FL, Rückert C, Kristiansen KA, Kalinowski J, Jiang Y, Wang L, Jiang C-L, Lale R, Zotchev SB (2018)
    Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic.
    FRONTIERS IN MICROBIOLOGY 9: 3139.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [294]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932967
    Van Loi V, Busche T, Preuss T, Kalinowski J, Bernhardt J, Antelmann H (2018)
    The AGXX (R) Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus.
    FRONTIERS IN MICROBIOLOGY 9: 3037.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [293]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917042
    Kranz A, Busche T, Vogel A, Usadel B, Kalinowski J, Bott M, Polen T (2018)
    RNAseq analysis of alpha-proteobacterium Gluconobacter oxydans 621H.
    BMC GENOMICS 19(1): 17.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668
    Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)
    N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII.
    Zeitschrift für Naturforschung C 73(1-2): 49-57.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [291]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
    Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
    Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources.
    FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [290]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933021
    Jiao J, Paterson J, Busche T, Rückert C, Kalinowski J, Harwani D, Grosso H (2018)
    Draft Genome Sequence of Streptomyces sp. Strain DH-12, a Soilborne Isolate from the Thar Desert with Broad-Spectrum Antibacterial Activity.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(9): UNSP e00108-18.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [289]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806
    Yuecel O, Wibberg D, Philipp B, Kalinowski J (2018)
    Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(1): UNSP e01372-17.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931524
    Schult F, Lee TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers S-V, Siebers B (2018)
    Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.
    NUCLEIC ACIDS RESEARCH 46(14): 7179-7192.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [287]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921229
    Schneider O, Ilic-Tomic T, Rückert C, Kalinowski J, Gencic MS, Zivkovic MZ, Stankovic N, Radulovic NS, Vasiljevic B, Nikodinovic-Runic J, Zotchev SB (2018)
    Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10.
    FRONTIERS IN MICROBIOLOGY 9: 10.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931111
    Paulus C, Rebets Y, Zapp J, Rückert C, Kalinowski J, Luzhetskyy A (2018)
    New Alpiniamides From Streptomyces sp IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme.
    FRONTIERS IN MICROBIOLOGY 9: 1959.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
    Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
    Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts.
    GigaScience 7(7): giy075.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [284]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920940
    Kibret M, Guerrero-Garzon JF, Urban E, Zehl M, Wronski V-K, Rückert C, Busche T, Kalinowski J, Rollinger JM, Abate D, Zotchev SB (2018)
    Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry.
    FRONTIERS IN MICROBIOLOGY 9: 13.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920679
    Busche T, Tsolis KC, Koepff J, Rebets Y, Rückert C, Hamed MB, Bleidt A, Wiechert W, Lopatniuk M, Yousra A, Anne J, Karamanou S, Oldiges M, Kalinowski J, Luzhetskyy A, Economou A (2018)
    Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion.
    FRONTIERS IN MICROBIOLOGY 9: 12.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
    Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
    Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.
    BMC GENOMICS 19(1): 15.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [281]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930282
    Lange J, Muench E, Mueller J, Busche T, Kalinowski J, Takors R, Blombach B (2018)
    Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis.
    GENES 9(6): 297.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917736
    Vu VL, Busche T, Tedin K, Bernhardt J, Wollenhaupt J, Huyen NTT, Weise C, Kalinowski J, Wahl MC, Fulde M, Antelmann H (2018)
    Redox-Sensing Under Hypochlorite Stress and Infection Conditions by the Rrf2-Family Repressor HypR in Staphylococcus aureus.
    ANTIOXIDANTS & REDOX SIGNALING 29(7): 22.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919053
    Tsolis KC, Tsare E-P, Orfanoudaki G, Busche T, Kanaki K, Ramakrishnan R, Rousseau F, Schymkowitz J, Rückert C, Kalinowski J, Anne J, Karamanou S, Klapa MI, Economou A (2018)
    Comprehensive subcellular topologies of polypeptides in Streptomyces.
    MICROBIAL CELL FACTORIES 17(1): 12.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
    Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
    The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [277]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
    Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
    Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing.
    Microbial Ecology 76(2): 518-529.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920133 OA
    Ruwe M, Rückert C, Kalinowski J, Persicke M (2018)
    Functional characterization of a small Alarmone Hydrolase in Corynebacterium glutamicum.
    Frontiers in Microbiology 9: 916.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930693 OA
    Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit A-C, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman J (2018)
    RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.
    G3: Genes|Genomes|Genetics 8(8): 2709-2722.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920943 OA
    Blifernez-Klassen O, Chaudhari S, Klassen V, Wördenweber R, Steffens T, Cholewa D, Niehaus K, Kalinowski J, Kruse O (2018)
    Metabolic survey of Botryococcus braunii: Impact of the physiological state on product formation.
    PLOS ONE 13(6): e0198976.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969 OA
    Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, Kalinowski J, Kormanec J, Rückert C (2018)
    Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin.
    Genome Announcements 6(9): e00103-18.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917296 OA
    Wittchen M, Busche T, Gaspar AH, Lee JH, Ton-That H, Kalinowski J, Tauch A (2018)
    Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation.
    BMC Genomics 19(1): 82.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921026 OA
    Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B (2018)
    High Quality de Novo Transcriptome Assembly of Croton tiglium.
    Frontiers in Molecular Biosciences 5: 62.
    PUB | PDF | DOI | Download (ext.)
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511
    Liu Y, Brandt D, Ishino S, Ishino Y, Koonin EV, Kalinowski J, Krupovic M, Prangishvili D (2018)
    New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures.
    Environmental Microbiology 21(6): 2002-2014.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917735
    Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Brasen C, Kalinowski J, Siebers B, Albers S-V (2018)
    Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(3): 19.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932986
    Schmidt FF, Steinhilber AE, Hammer HS, Mentz A, Kalinowski J, Lichtenstein D, Braeuning A, Marx-Stoelting P, Lampen A, Joos T, Poetz O (2018)
    Analysis of toxicologically relevant biomarkers in pesticide-treated HepaRG cells by MS-based immunoassays.
    TOXICOLOGY LETTERS 295(Suppl. 1): S87.
    PUB | DOI | WoS
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931492
    Yushchuk O, Ostash I, Vlasiuk I, Gren T, Luzhetskyy A, Kalinowski J, Fedorenko V, Ostash B (2018)
    Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 102(19): 8419-8428.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930276
    Ludwig P, Sevin DC, Busche T, Kalinowski J, Bourdeaux F, Grininger M, Mack M (2018)
    Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis.
    MICROBIOLOGY-SGM 164(6): 908-919.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267
    Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)
    Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification.
    JOURNAL OF BIOTECHNOLOGY 272: 40-47.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920690
    Schwentner A, Feith A, Muench E, Busche T, Rückert C, Kalinowski J, Takors R, Blombach B (2018)
    Metabolic engineering to guide evolution - Creating a novel mode for L-valine production with Corynebacterium glutamicum.
    METABOLIC ENGINEERING 47: 31-41.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235
    Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)
    Characterization of the Actinonin Biosynthetic Gene Cluster.
    CHEMBIOCHEM 19(11): 1189-1195.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662
    Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, Lavy A, Rückert C, Ilan M, Kalinowski J, Matsunaga S, Takeyama H, Piel J (2018)
    Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918674
    Landwehr W, Kaempfer P, Glaeser SP, Rückert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, Rohde M, Martin K, Stadler M, Wink J (2018)
    Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1): 382-393.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913367
    Baumgart M, Unthan S, Kloss R, Radek A, Polen T, Tenhaef N, Müller MF, Küberl A, Siebert D, Brühl N, Marin K, Hans S, Krämer R, Bott M, Kalinowski J, Wiechert W, Seibold G, Frunzke J, Rückert C, Wendisch VF, Noack S (2018)
    Corynebacterium glutamicum chassis C1*: Building and testing a novel platform host for synthetic biology and industrial biotechnology.
    ACS Synthetic Biology 7(1): 132–144.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691
    Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)
    Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA).
    METALLOMICS 10(5): 722-734.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
    Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, Schmidt G, Tischler D (2018)
    On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
    Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
    Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans.
    BIOTECHNOLOGY PROGRESS 34(1): 287-292.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913116 OA
    Wolf T, Droste J, Gren T, Ortseifen V, Schneiker-Bekel S, Zemke T, Pühler A, Kalinowski J (2017)
    The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110.
    BMC Genomics 18(1): 562.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912234
    Eliwa EM, Abdel-Razek AS, Frese M, Wibberg D, Halawa AH, El-Agrody AM, Bedair AH, Kalinowski J, Sewald N, Shaaban M (2017)
    New bioactive compounds from the marine-derived actinomycete Nocardiopsis lucentensis sp. ASMR2.
    Zeitschrift für Naturforschung B 72(5): 351-360.
    PUB | DOI | WoS
     
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    2017 | Datenpublikation | PUB-ID: 2930821 OA
    Karsten L, Bergen D, Drake C, Dymek S, Edich M, Haak M, Kerkhoff D, Kerkhoff Y, Liebers M, März C, Schlüter L, Schmidt O, Vinke S, M. Whitford C, Pucker B, Droste J, Rückert C, Müller K, Kalinowski J (2017)
    Expanding The Genetic Code.
    Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909070
    Paulus C, Rebets Y, Tokovenko B, Nadmid S, Terekhova LP, Myronovskyi M, Zotchev SB, Rückert C, Braig S, Zahler S, Kalinowski J, Luzhetskyy A (2017)
    New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp MP131-18.
    SCIENTIFIC REPORTS 7(1): 42382.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908076
    Makarewicz O, Lucas M, Brandt C, Herrmann L, Albersmeier A, Rückert C, Blom J, Goesmann A, van der Linden M, Kalinowski J, Pletz MW (2017)
    Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15B.
    PLoS One 12(1): e0169370.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911272
    Hillion M, Bernhardt J, Busche T, Rossius M, Maaß S, Becher D, Rawat M, Wirtz M, Hell R, Rückert C, Kalinowski J, Antelmann H (2017)
    Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress.
    Sci Rep 7(1): 1195.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | PUB-ID: 2911274
    Crnovčić I, Rückert C, Semsary S, Lang M, Kalinowski J, Keller U (2017)
    Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C.
    Adv Appl Bioinform Chem 10: 29-46.
    PUB | DOI | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | PUB-ID: 2912103
    Tokovenko B, Rückert C, Kalinowski J, Mohammadipanah F, Wink J, Rosenkränzer B, Myronovskyi M, Luzhetskyy A (2017)
    Complete Draft Genome Sequence of the Actinobacterium Nocardiopsis sinuspersici UTMC102 (DSM 45277T), Which Produces Serine Protease.
    Genome Announc 5(20): e00362-17.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913400
    Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk H-P, Busche T, Kalinowski J, Bredholt H, Zotchev SB (2017)
    Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.
    Antonie Van Leeuwenhoek. Journal of Microbiology 110(12): 1705-1717.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | PUB-ID: 2913404
    Grimm I, Dumke J, Vollmer T, Hinse D, Rückert C, Kalinowski J, Knabbe C, Dreier J (2017)
    Complete Genome Sequence of the Streptococcus gallolyticus subsp. gallolyticus Strain DSM 16831.
    Genome Announcements 5(16): e00108-17.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912983
    Boehm K, Meyer F, Rhomberg A, Kalinowski J, Donovan C, Bramkamp M (2017)
    Novel Chromosome Organization Pattern in Actinomycetales-Overlapping Replication Cycles Combined with Diploidy.
    MBIO 8(3): e00511-17.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916525
    Dostalova H, Holatko J, Busche T, Rucka L, Rapoport A, Halada P, Nesvera J, Kalinowski J, Patek M (2017)
    Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum.
    AMB EXPRESS 7(1): 133.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916533
    Sun Y-Q, Busche T, Rückert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB (2017)
    Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites.
    ACS SYNTHETIC BIOLOGY 6(6): 1026-1033.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916403
    Hossain MS, Persicke M, ElSayed AI, Kalinowski J, Dietz K-J (2017)
    Metabolite profiling at the cellular and subcellular level reveals metabolites associated with salinity tolerance in sugar beet.
    Journal of Experimental Botany 68(21-22): 5961-5976.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916447
    Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C (2017)
    The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner.
    PLOS ONE 12(10): e0186505.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913963 OA
    Ruwe M, Kalinowski J, Persicke M (2017)
    Identification and Functional Characterization of Small Alarmone Synthetases in Corynebacterium glutamicum.
    Frontiers in Microbiology 8: 1601.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912419 OA
    Taniguchi H, Busche T, Patschkowski T, Niehaus K, Patek M, Kalinowski J, Wendisch VF (2017)
    Physiological roles of sigma factor SigD in Corynebacterium glutamicum.
    BMC Microbiology 17(1): 158.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914662 OA
    Fernandes de Brito L, Irla M, Kalinowski J, Wendisch VF (2017)
    Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology.
    BMC Genomics 18(1): 846.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2913401
    Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
    Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms.
    International Journal of Systematic and Evolutionary Microbiology 67(8): 3111-3116.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386 OA
    Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
    Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation.
    Biotechnology for Biofuels 10(1): 197.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038 OA
    Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
    Highly efficient methane generation from untreated microalgae biomass.
    Biotechnology for Biofuels 10(1): 186.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913110 OA
    Kulis-Horn R, Rückert C, Kalinowski J, Persicke M (2017)
    Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond.
    BMC Microbiology 17(1): 161.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432
    Celis JS, Edgell DR, Stelbrink B, Wibberg D, Hauffe T, Blom J, Kalinowski J, Wilke T (2017)
    Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
    PLOS ONE 12(3): e0173734.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668 OA
    Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
    A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production.
    Frontiers in Microbiology 8: 780.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419 OA
    Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
    Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.
    Genome Announcements 5(4): e01513-16.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916528
    Wolf T, Schneiker-Bekel S, Neshat A, Ortseifen V, Wibberg D, Zemke T, Pühler A, Kalinowski J (2017)
    Genome improvement of the acarbose producer Actinoplanes sp SE50/110 and annotation refinement based on RNA-seq analysis.
    JOURNAL OF BIOTECHNOLOGY 251: 112-123.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017
    Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)
    Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases.
    PHYTOCHEMISTRY 136: 15-22.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912973
    Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D (2017)
    Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.
    FEBS JOURNAL 284(13): 2078-2095.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911994
    Wolf F, Bauer JS, Bendel TM, Kulik A, Kalinowski J, Gross H, Kaysser L (2017)
    Biosynthesis of the beta-Lactone Proteasome Inhibitors Belactosin and Cystargolide.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 56(23): 6665-6668.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911273
    Koepff J, Keller M, Tsolis CK, Busche T, Rückert C, Hamed MB, Anné J, Kalinowski J, Wiechert W, Economou A, Oldiges M (2017)
    Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation.
    Biotechnol Bioeng 114(9): 2011-2022.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380
    Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2017)
    New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4.
    Zeitschrift für Naturforschung B 72(1): 53-62.
    PUB | DOI | WoS
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916444
    Schwarzhans JP, Luttermann T, Geier M, Kalinowski J, Friehs K (2017)
    Towards systems metabolic engineering in Pichia pastoris.
    BIOTECHNOLOGY ADVANCES 35(6): 681-710.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
    Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
    Isolation and whole genome analysis of endospore-forming bacteria from heroin.
    Forensic Sci Int Genet 32: 1-6.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914538
    Ortseifen V, Kalinowski J, Pühler A, Rückert C (2017)
    The complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) carrying gene clusters for the biosynthesis of tetracenomycin C, 5`-hydroxy streptomycin, and acarbose.
    J Biotechnol 262: 84-88.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
    Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, Wohlleben W (2017)
    Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
    Journal of Biotechnology 257: 233-239.
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918206
    Kämpfer P, Rückert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP (2017)
    Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953.
    International Journal of Systematic and Evolutionary Microbiology 68(1): 42-46.
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    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916527
    Rieke S, Heise T, Schmidt F, Haider W, Bednarz H, Niehaus K, Mentz A, Kalinowski J, Hirsch-Ernst KI, Steinberg P, Niemann L, Marx-Stoelting P (2017)
    Mixture effects of azole fungicides on the adrenal gland in a broad dose range.
    TOXICOLOGY 385: 28-37.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2017 | Zeitschriftenaufsatz | PUB-ID: 2913406
    Albersmeier A, Pfeifer-Sancar K, Rückert C, Kalinowski J (2017)
    Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.
    Journal of Biotechnology 257: 99-109.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907722
    Wolf J, Stark H, Fafenrot K, Albersmeier A, Pham TK, Mueller KB, Meyer BH, Hoffmann L, Shen L, Albaum SP, Kouril T, Schmidt-Hohagen K, Neumann-Schaal M, Braesen C, Kalinowski J, Wright PC, Albers S-V, Schomburg D, Siebers B (2016)
    A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.
    MOLECULAR MICROBIOLOGY 102(5): 882-908.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
    Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)
    An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
    BMC Genomics 17(1): 796.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
    Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
    Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes.
    PLOS ONE 11(8): e0159873.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905959
    Horbal L, Ostash B, Luzhetskyy A, Walker S, Kalinowski J, Fedorenko V (2016)
    A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 100(17): 7629-7638.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
    Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
    Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
    BMC Genomics 17(1): 117.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655 OA
    Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
    Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization.
    Microbial Cell Factories 15(1): 84.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679 OA
    Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
    Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing.
    Scientific Reports 6(1): 38952.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685 OA
    Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
    Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge.
    Standards in Genomic Sciences 11(1): 91.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976 OA
    Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
    Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa).
    Genome Announcements 4(3): e00524-16.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904989 OA
    Shah A, Schielzeth H, Albersmeier A, Kalinowski J, Hoffman J (2016)
    High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.
    Ecology and Evolution 16(6): 5718-5727.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143
    Wibberg D, Al-Dilaimi A, Busche T, Wedderhoff I, Schrempf H, Kalinowski J, Lucana DO de O (2016)
    Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose.
    JOURNAL OF BIOTECHNOLOGY 222: 13-14.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630
    Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)
    Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors.
    Journal of Biotechnology 232: 79-88.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907748
    Jagmann N, Bleicher V, Busche T, Kalinowski J, Philipp B (2016)
    The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila.
    ENVIRONMENTAL MICROBIOLOGY 18(10): 3550-3564.
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    2016 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907640
    Baumgart M, Unthan S, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Kalinowski J, Rückert C, Wendisch VF, Noack S, Frunzke J (2016)
    Chassis organism from Corynebacterium glutamicum – Genome reduction as a tool toward improved strains for synthetic biology and industrial biotechnology.
    In: New Biotechnology. New Biotechnology, 33. Elsevier BV.
    PUB | DOI | WoS
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
    Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
    Complete mitochondrial genome of the scleractinian coral Porites rus.
    Mitochondrial DNA 27(5): 3695-3696.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
    Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, Vargas LK, Wendisch VF (2016)
    Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems.
    Soil Biology and Biochemistry 96: 191-197.
    PUB | DOI | WoS
     
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905947
    Zimmermann J, Rückert C, Kalinowski J, Lipski A (2016)
    Corynebacterium crudilactis sp. nov., a new Corynebacterium species isolated from raw cow´s milk.
    Int J Syst Evol Microbiol 66(12): 5288-5293.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505
    Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)
    Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System.
    Journal of Biotechnology 231: 122-128.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905632
    Walter F, Grenz S, Ortseifen V, Persicke M, Kalinowski J (2016)
    Corynebacterium glutamicum ggtB encodes a functional gamma-glutamyl transpeptidase with gamma-glutamyl dipeptide synthetic and hydrolytic activity.
    Journal of Biotechnology 232: 99-109.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901243
    Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A (2016)
    Comparative proteome analysis of Actinoplanes sp SE50/110 grown with maltose or glucose shows Minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters.
    Journal of Proteomics 131: 140-148.
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    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905633
    Manderscheid N, Bilyk B, Busche T, Kalinowski J, Paululat T, Bechthold A, Petzke L, Luzhetskyy A (2016)
    An influence of the copy number of biosynthetic gene clusters on the production level of antibiotics in a heterologous host.
    JOURNAL OF BIOTECHNOLOGY 232: 110-117.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771
    Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S (2015)
    Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clusters.
    Biotechnology Journal 10(2): 290-301.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758666
    Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T, Giard J-C, Kalinowski J, Hain T, Hartke A (2015)
    The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice.
    PLoS ONE 10(5): e0126143.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901251
    Leipoldt F, Zeyhle P, Kulik A, Kalinowski J, Heide L, Kaysser L (2015)
    Diversity of ABBA Prenyltransferases in Marine Streptomyces sp CNQ-509: Promiscuous Enzymes for the Biosynthesis of Mixed Terpenoid Compounds.
    Plos One 10(12): e0143237.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131 OA
    Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)
    De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.
    BMC Genomics 16(1): 1038.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868 OA
    Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2015)
    Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T.
    Standards in Genomic Sciences 10(1): 5.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160
    Kurosawa K, Plassmeier J, Kalinowski J, Rückert C, Sinskey AJ (2015)
    Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production.
    Metabolic engineering 30: 89-95.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706344 OA
    Irla M, Neshat A, Brautaset T, Rückert C, Kalinowski J, Wendisch VF (2015)
    Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape.
    BMC Genomics 16(1): 73.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2723776
    Heravi KM, Lange J, Watzlawick H, Kalinowski J, Altenbuchner J (2015)
    Transcriptional Regulation of the Vanillate Utilization Genes (vanABK Operon) of Corynebacterium glutamicum by VanR, a PadR-Like Repressor.
    Journal of Bacteriology 197(5): 959-972.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746
    Rückert C, Leipoldt F, Zeyhle P, Fenical W, Jensen PR, Kalinowski J, Heide L, Kaysser L (2015)
    Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry.
    Journal of Biotechnology 216: 140-141.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764291
    Ostash B, Yushchuk O, Tistechok S, Mutenko H, Horbal L, Muryn A, Dacyuk Y, Kalinowski J, Luzhetskyy A, Fedorenko V (2015)
    The adpA-like regulatory gene from Actinoplanes teichomyceticus: in silico analysis and heterologous expression.
    World Journal of Microbiology and Biotechnology 31(8): 1297-1301.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555
    Müller C, Birmes FS, Rückert C, Kalinowski J, Fetzner S (2015)
    Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuation.
    Applied and Environmental Microbiology 81(22): 7720-7729.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
    Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
    Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules.
    Journal of biotechnology 211: 99-100.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434
    Oelschlägel M, Rückert C, Kalinowski J, Schmidt G, Schlömann M, Tischler D (2015)
    Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid.
    International journal of systematic and evolutionary microbiology 65(Part 9): 3008-3015.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700185
    Al-Dilaimi A, Bednarz H, Lömker A, Niehaus K, Kalinowski J, Rückert C (2015)
    Revisiting Corynebacterium glyciniphilum (ex Kubota et al. 1972) sp. nov., nom. rev., isolated from putrefied banana.
    International journal of systematic and evolutionary microbiology 65(Pt 1): 177-182.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
    Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
    Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.
    Journal of Biotechnology 194: 81-83.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764307
    Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A (2015)
    Comprehensive proteome analysis of Actinoplanes sp SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster.
    Journal of Proteomics 125: 1-16.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
    Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J (2015)
    Complete genome sequence of Streptomyces lividans TK24.
    Journal of Biotechnology 199: 21-22.
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    2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2902782
    Knebel C, Marx-Stoelting P, Pfeil R, Seeger B, Steinberg P, Mentz A, Bednarz H, Niehaus K, Kalinowski J, Noll T, Heise T (2015)
    Multi-level omics analysis of combination effects of (tri-)azoles in a set of different cell lines.
    Toxicology Letters 238(2): S355.
    PUB | DOI | WoS
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901032
    Mahr R, Gaetgens C, Gaetgens J, Polen T, Kalinowski J, Frunzke J (2015)
    Biosensor-driven adaptive laboratory evolution of L-valine production in Corynebacterium glutamicum.
    Metabolic Engineering 32: 184-194.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
    Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, Jacques P, Huijbers MME, van Berkel WJH, Weber T, Wohlleben W, Kalinowski J (2015)
    Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential.
    Journal of Biotechnology 211: 101-102.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2759737
    Kulis-Horn R, Persicke M, Kalinowski J (2015)
    Corynebacterium glutamicum ATP-phosphoribosyl transferases suitable for L-histidine production - Strategies for the elimination of feedback inhibition.
    Journal of Biotechnology 206: 26-37.
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    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884
    Fernandes de Brito L, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia L, Wendisch VF (2015)
    Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium.
    Journal of Biotechnology 207: 30-31.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676082
    Ian E, Malko DB, Sekurova ON, Bredholt H, Rückert C, Borisova ME, Albersmeier A, Kalinowski J, Gelfand MS, Zotchev SB (2014)
    Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential.
    PloS one 9(5): e96719.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
    Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UAE, Heycke N, Schmitt S, Rinke C, Helfrich EJN, Brachmann AO, Gurgui C, Wakimoto T, Kracht M, Crüsemann M, Hentschel U, Abe I, Matsunaga S, Kalinowski J, Takeyama H, Piel J (2014)
    An environmental bacterial taxon with a large and distinct metabolic repertoire.
    Nature 506(7486): 58-62.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685853
    Zeyhle P, Bauer JS, Kalinowski J, Shin-ya K, Gross H, Heide L (2014)
    Genome-Based Discovery of a Novel Membrane-Bound 1,6-Dihydroxyphenazine Prenyltransferase from a Marine Actinomycete.
    PLoS ONE 9(6): e99122.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
    Rebets Y, Tokovenko B, Lushchyk I, Rückert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A (2014)
    Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.
    BMC genomics 15(1): 885.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647986
    Rückert C, Kalinowski J, Heide L, Apel AK (2014)
    Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin.
    Genome announcements 2(1): e01147-13.
    PUB | DOI | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
    Flinspach K, Rückert C, Kalinowski J, Heide L, Apel AK (2014)
    Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin.
    Genome announcements 2(1): e01146-13.
    PUB | DOI | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944854
    Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UAE, Heycke N, Schmitt S, Rinke C, Helfrich EJN, Brachmann AO, Gurgui C, Wakimoto T, Kracht M, Crüsemann M, Hentschel U, Abe I, Matsunaga S, Kalinowski J, Takeyama H, Piel J (2014)
    Erratum: Corrigendum: An environmental bacterial taxon with a large and distinct metabolic repertoire.
    Nature 507(7491): 262-262.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
    Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
    GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
    PLOS ONE 9(9): e107014.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
    Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
    Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph.
    Journal of Biotechnology 188: 110-111.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029 OA
    Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
    ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis.
    PLoS ONE 9(11): e113909.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
    Lübke N-C, Wolf T, Braun R, Rückert C, Kalinowski J (2014)
    Vom Schärfesensor zur mikrobiellen Brennstoffzelle.
    BIOspektrum 20(4): 468-469.
    PUB | DOI
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
    Neshat A, Mentz A, Rückert C, Kalinowski J (2014)
    Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis.
    Journal of biotechnology 190: 55-63.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
    Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A (2014)
    ReadXplorer - Visualization and Analysis of Mapped Sequences.
    Bioinformatics 30(16): 2247-2254.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
    Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A (2014)
    Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.
    Journal of Biotechnology 190: 85-95.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645148
    Kulis-Horn R, Persicke M, Kalinowski J (2014)
    Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum.
    Microbial Biotechnology 7(1): 5-25.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289
    Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C (2014)
    Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer.
    Journal of Biotechnology 189: 70-71.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
    Walter F, Albersmeier A, Kalinowski J, Rückert C (2014)
    Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese.
    Journal of Biotechnology 189: 76-77.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707667
    Zeyhle P, Bauer JS, Steimle M, Leipoldt F, Roesch M, Kalinowski J, Gross H, Heide L (2014)
    A Membrane-Bound Prenyltransferase Catalyzes the O-Prenylation of 1,6-Dihydroxyphenazine in the Marine Bacterium Streptomyces sp CNQ-509.
    ChemBioChem 15(16): 2385-2392.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656728
    Chi BK, Busche T, Van Laer K, Baesell K, Becher D, Clermont L, Seibold GM, Persicke M, Kalinowski J, Messens J, Antelmann H (2014)
    Protein S-Mycothiolation Functions as Redox-Switch and Thiol Protection Mechanism in Corynebacterium glutamicum Under Hypochlorite Stress.
    Antioxidants & Redox Signaling 20(4): 589-605.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676806
    Busche T, Pfeifer-Sancar K, Rückert C, Kalinowski J (2014)
    Identifizierung von Promotoren in Corynebacterium glutamicum.
    BIOspektrum 20(3): 284-287.
    PUB | DOI
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
    Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J (2014)
    Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.
    Journal of biotechnology 178: 41-42.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689749
    Milse J, Petri K, Rückert C, Kalinowski J (2014)
    Transcriptional response of Corynebacterium glutamicum ATCC 13032 to hydrogen peroxide stress and characterization of the OxyR regulon.
    Journal of Biotechnology 190: 40-54.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662843
    Myronovskyi M, Tokovenko B, Brötz E, Rückert C, Kalinowski J, Luzhetskyy A (2014)
    Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activation.
    Applied microbiology and biotechnology 98(2): 795-806.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693535
    Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C (2014)
    Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid.
    Journal of biotechnology 189: 46-47.
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    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710431
    Wendler S, Ortseifen V, Persicke M, Klein A, Neshat A, Niehaus K, Schneiker-Bekel S, Walter F, Wehmeier UF, Kalinowski J, Pühler A (2014)
    Carbon source dependent biosynthesis of acarviose metabolites in Actinoplanes sp SE50/110.
    Journal of Biotechnology 191: 113-120.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555771
    Pátek M, Holátko J, Busche T, Kalinowski J, Nešvera J (2013)
    Corynebacterium glutamicum promoters: a practical approach.
    Microbial Biotechnology 6(2): 103-117.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2648007
    Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J (2013)
    Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T).
    Standards in Genomic Sciences 9(3): 505-513.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631977 OA
    Petri K, Walter F, Persicke M, Rückert C, Kalinowski J (2013)
    A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum.
    BMC Genomics 14(1): 713.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2644101 OA
    Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C (2013)
    Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T).
    Standards in Genomic Sciences 8(3): 516-524.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631969 OA
    Mentz A, Neshat A, Pfeifer-Sancar K, Pühler A, Rückert C, Kalinowski J (2013)
    Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
    BMC Genomics 14(1): 714.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643373 OA
    Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J (2013)
    Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
    BMC Genomics 14(1): 888.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
    Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
    Corrigendum: Updating benchtop sequencing performance comparison.
    Nature biotechnology 31(12): 1148.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
    Köhler KAK, Rückert C, Schatschneider S, Vorhölter F-J, Szczepanowski R, Blank LM, Niehaus K, Goesmann A, Pühler A, Kalinowski J, Schmid A (2013)
    Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil.
    Journal of Biotechnology 168(4): 729-730.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614906
    Wendler S, Hürtgen D, Kalinowski J, Klein A, Niehaus K, Schulte F, Schwientek P, Wehlmann H, Wehmeier UF, Pühler A (2013)
    The cytosolic and extracellular proteomes of Actinoplanes sp. SE50/110 led to the identification of gene products involved in acarbose metabolism.
    Journal of Biotechnology 167(2): 178-189.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
    Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S (2013)
    Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study.
    PLoS medicine 10(2): e1001387.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
    Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
    Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.
    Journal of Biotechnology 168(4): 739-740.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625606
    Klaffl S, Brocker M, Kalinowski J, Eikmanns BJ, Bott M (2013)
    Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum.
    Journal Of Bacteriology 195(18): 4283-4296.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
    Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D (2013)
    Updating benchtop sequencing performance comparison.
    Nature Biotechnology 31(4): 294-296.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2614036
    Baumgart M, Unthan S, Rückert C, Sivalingam J, Grünberger A, Kalinowski J, Bott M, Noack S, Frunzke J (2013)
    Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnology.
    Applied and environmental microbiology 79(19): 6006-6015.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
    Schwientek P, Wendler S, Neshat A, Eirich C, Rückert C, Klein A, Wehmeier UF, Kalinowski J, Stoye J, Pühler A (2013)
    Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media.
    Journal of Biotechnology 167(2): 166-177.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668 OA
    Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O (2013)
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics 14(1): 926.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555355
    Plassmeier J, Busche T, Molck S, Persicke M, Pühler A, Rückert C, Kalinowski J (2013)
    A propionate-inducible expression system based on the Corynebacterium glutamicum prpD2 promoter and PrpR activator and its application for the redirection of amino acid biosynthesis pathways.
    Journal of Biotechnology 163(2): 225-232.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486027
    Laslo T, von Zaluskowski P, Gabris C, Lodd E, Rückert C, Dangel P, Kalinowski J, Auchter M, Seibold G, Eikmanns BJ (2012)
    Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlR.
    Journal of Bacteriology 194(5): 941-955.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2545867
    Klenke C, Janowski SJ, Borck D, Widera D, Ebmeyer J, Kalinowski J, Leichtle A, Hofestädt R, Upile T, Kaltschmidt C, Kaltschmidt B, Sudhoff H (2012)
    Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome Microarrays.
    PLoS One 7(12): e52718.
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
    Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A (2012)
    The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
    BMC Genomics 13(1): 112.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [130]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2528277 OA
    Busche T, Silar R, Picmanova M, Patek M, Kalinowski J (2012)
    Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum.
    BMC Genomics 13(1): 445.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551038
    Rückert C, Albersmeier A, Al-Dilaimi A, Niehaus K, Szczepanowski R, Kalinowski J (2012)
    Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093T (= DSM 44683T).
    Standards in Genomic Sciences 7(2): 284-293.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
    Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
    The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
    Journal of bacteriology 194(24): 6818-6827.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530872
    Rückert C, Licht K, Kalinowski J, Espírito Santo C, Antwerpen M, Hanczaruk M, Reischl U, Holzmann T, Gessner A, Tiemann C, Grass G (2012)
    Draft Genome Sequence of Bacillus anthracis UR-1, Isolated from a German Heroin User.
    Journal of bacteriology 194(21): 5997-5998.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560259
    Heyer A, Gaetgens C, Hentschel E, Kalinowski J, Bott M, Frunzke J (2012)
    The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicum.
    Microbiology 158(Pt_12): 3020-3031.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548248
    Antwerpen M, Proença DN, Rückert C, Licht K, Kalinowski J, Hanczaruk M, Tiemann C, Grass G (2012)
    Draft genome sequence of Bacillus anthracis BF-1, Isolated from Bavarian cattle.
    Journal of bacteriology 194(22): 6360-6361.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2530508
    Piel J, Freeman MF, Gurgui C, Helf M, Morinaka B, Wilson MC, Mori T, Rückert C, Steffens U, Takada K, Gernert C, Uria AR, Wakimoto T, Abe I, Hentschel U, Kalinowski J, Takeyama H, Matsunaga S (2012)
    Chemical surprises from an uncultivated sponge symbiont.
    Planta Medica 78(11): 1040-+.
    PUB | WoS
     
  • [123]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501701
    Beckert P, Hillemann D, Kohl T, Kalinowski J, Richter E, Niemann S, Feuerriegel S (2012)
    rplC T460C Identified as a Dominant Mutation in Linezolid-Resistant Mycobacterium tuberculosis Strains.
    Antimicrobial Agents and Chemotherapy 56(5): 2743-2745.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
    Persicke M, Rückert C, Plassmeier J, Stutz L, Kessler N, Kalinowski J, Goesmann A, Neuweger H (2012)
    MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example.
    Metabolomics 8(2): 310-322.
    PUB | DOI | WoS
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
    Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
    Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae.
    BMC Genomics 13(1): 465.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2520163
    Chen X, Kohl TA, Rückert C, Rodionov DA, Li L-H, Ding J-Y, Kalinowski J, Liu S-J (2012)
    Phenylacetic Acid Catabolism and Its Transcriptional Regulation in Corynebacterium glutamicum.
    Applied and environmental microbiology 78(16): 5796-5804.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
    Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
    Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis.
    BMC Genomics 12(1): 400.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944855
    Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
    Erratum to “Size exclusion chromatography—An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites” [J. Biotechnol. 154 (2–3) (2011) 171–178].
    Journal of Biotechnology 155(2): 266-267.
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289494
    Persicke M, Plassmeier J, Neuweger H, Rückert C, Pühler A, Kalinowski J (2011)
    Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites.
    Journal of Biotechnology 154(2-3): 171-178.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404808
    Plassmeier J, Persicke M, Pühler A, Sterthoff C, Rückert C, Kalinowski J (2011)
    Molecular characterization of PrpR, the transcriptional activator of propionate catabolism in Corynebacterium glutamicum.
    Journal of Biotechnology 159(1-2): 1-11.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2440558
    Jankowitsch F, Kuehm C, Kellner R, Kalinowski J, Pelzer S, Macheroux P, Mack M (2011)
    A Novel N,N-8-Amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) Catalyzing the Two Terminal Steps of Roseoflavin Biosynthesis in Streptomyces davawensis.
    Journal of Biological Chemistry 286(44): 38275-38285.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289491
    Kalinowski J (2011)
    Regulatory and Metabolic Networks for Amino Acid Production by Corynebacterium glutamicum.
    Journal of Biotechnology 154(2-3): 99-100.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
    Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
    Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis.
    Clinical Chemistry and Laboratory Medicine 49: S837.
    PUB | WoS
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
    Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
    Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
    Bioinformatics 27(10): 1351-1358.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093546
    Auchter M, Laslo T, Fleischer C, Schiller L, Arndt A, Gaigalat L, Kalinowski J, Eikmanns BJ (2011)
    Control of adhA and sucR expression by the SucR regulator in Corynebacterium glutamicum.
    Journal of Biotechnology 152(3): 77-86.
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    RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolism.
    J Biotechnol 154(2-3): 126-139.
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    Kalinowski J, Rückert C, Szczepanowski R, Pühler A (2010)
    Advanced Genomics and Transcriptomics of Industrial Microorganisms.
    Chemie Ingenieur Technik 82(9): 1518-1519.
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    Fraenzel B, Troetschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA (2010)
    Adaptation of Corynebacterium glutamicum to salt-stress conditions.
    PROTEOMICS 10(3): 445-457.
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    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795939
    Chao T-C, Kalinowski J, Nyalwidhe J, Hansmeier N (2010)
    Comprehensive proteome profiling of the Fe(III)-reducing myxobacterium Anaeromyxobacter dehalogenans 2CP-C during growth with fumarate and ferric citrate.
    PROTEOMICS 10(8): 1673-1684.
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    Fraenzel B, Poetsch A, Troetschel C, Persicke M, Kalinowski J, Wolters DA (2010)
    Quantitative proteomic overview on the Corynebacterium glutamicum L-lysine producing strain DM1730.
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    Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
    BMC Systems Biology 3(1): 82.
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    Characterization of the Lacl-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032.
    MICROBIOLOGY 155(1): 150-164.
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    Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
    Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
    Bioinformatics 25(23): 3128-3134.
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    Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J (2009)
    From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet.
    NUCLEIC ACIDS RESEARCH 37(14): e97.
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    Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis.
    BMC Genomics 10(1): 621.
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    Barreiro C, Nakunst D, Hueser AT, de Paz HD, Kalinowski J, Martin JF (2009)
    Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum.
    MICROBIOLOGY-SGM 155(2): 359-372.
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    Gartemann K-H, Abt B, Bekel T, Burger A, Engemann J, Fluegel M, Gaigalat L, Goesmann A, Graefen I, Kalinowski J, Kaup O, Kirchner O, Krause L, Linke B, McHardy A, Meyer F, Pohle S, Rückert C, Schneiker-Bekel S, Zellermann E-M, Pühler A, Eichenlaub R, Kaiser O, Bartels D (2008)
    The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity.
    JOURNAL OF BACTERIOLOGY 190(6): 2138-2149.
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    Rückert C, Kalinowski J (2008)
    Sulfur Metabolism in Corynebacterium glutamicum.
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    Brinkrolf K, Ploeger S, Solle S, Brune I, Nentwich SS, Hueser AT, Kalinowski J, Pühler A, Tauch A (2008)
    The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences.
    MICROBIOLOGY 154(4): 1068-1081.
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    2008 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1587496
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    Looking for non-coding RNAs in Corynebacterium glutamicum.
    FEBS JOURNAL 275(Suppl. 1): 153.
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    Rückert C, Milse J, Albersmeier A, Koch DJ, Pühler A, Kalinowski J (2008)
    The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules.
    BMC GENOMICS 9(1): 483.
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    Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, Kalinowski J, Kamp P-B, Lobo FP, Viehöver P, Weisshaar B, Soriano F, Droege M, Pühler A (2008)
    The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
    Journal of Biotechnology 136(1-2): 11-21.
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    2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
    Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
    ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
    In: HUPO 7th Annual World Congress. .
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    Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter F-J, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Bloecker H, Pühler A, Mueller R (2007)
    Complete genome sequence of the myxobacterium Sorangium cellulosum.
    Nature Biotechnology 25(11): 1281-1289.
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    Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A (2007)
    CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
    BMC Systems Biology 1(1): 55.
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    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596355
    Walter B, Haenssler E, Kalinowski J, Burkovski A (2007)
    Nitrogen metabolism and nitrogen control in corynebacteria: Variations of a common theme.
    JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 12(1-2): 131-138.
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    Brune I, Jochmann N, Brinkrolf K, Hueser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A (2007)
    The Ic1R-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum.
    JOURNAL OF BACTERIOLOGY 189(7): 2720-2733.
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    Hansmeier N, Chao T-C, Daschkey S, Muesken M, Kalinowski J, Pühler A, Tauch A (2007)
    A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411.
    PROTEOMICS 7(7): 1076-1096.
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    Haenssler E, Mueller T, Jessberger N, Voelzke A, Plassmeier J, Kalinowski J, Kraemer R, Burkovski A (2007)
    FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 76(3): 625-632.
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    2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596102 OA
    Larisch C, Nakunst D, Hueser AT, Tauch A, Kalinowski J (2007)
    The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase.
    BMC Genomics 8(1): 4.
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    Investigation of central carbon metabolism and the 2-methylcitrate cycle in Corynebacterium glutamicum by metabolic profiling using gas chromatography-mass spectrometry.
    Journal of Biotechnology 130(4): 354-363.
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    The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes.
    JOURNAL OF BACTERIOLOGY 189(13): 4696-4707.
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    Gaigalat L, Schlüter J-P, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J (2007)
    The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum.
    BMC Molecular Biology 8(1): 104.
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    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1946381
    Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A (2006)
    Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression.
    J Biotechnol 127(1): 21-33.
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    2006 | Zeitschriftenaufsatz | PUB-ID: 2405187
    Feng J, Che Y, Milse J, Yin Y-J, Liu L, Rückert C, Shen X-H, Qi S-W, Kalinowski J, Liu S-J (2006)
    The Gene ncgl2918 Encodes a Novel Maleylpyruvate Isomerase That Needs Mycothiol as Cofactor and Links Mycothiol Biosynthesis and Gentisate Assimilation in Corynebacterium glutamicum.
    Journal of Biological Chemistry 281(16): 10778-10785.
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    Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A (2006)
    The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.
    BMC Genomics 7(1): 21.
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    Feng J, Che YS, Milse J, Yin YJ, Liu L, Ruckert C, Shen XH, Qi SW, Kalinowski J, Liu SJ (2006)
    The gene ncgl2918 encodes a novel maleylpyruvate isomerase that needs mycothiol as cofactor and links mycothiol biosynthesis and gentisate assimilation in Corynebacterium glutamicum.
    JOURNAL OF BIOLOGICAL CHEMISTRY 281(16): 10778-10785.
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    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599402
    Hansmeier N, Chao TC, Kalinowski J, Pühler A, Tauch A (2006)
    Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae.
    PROTEOMICS 6(8): 2465-2476.
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    Hansmeier N, Albersmeier A, Tauch A, Damberg T, Ros R, Anselmetti D, Pühler A, Kalinowski J (2006)
    The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032.
    Microbiology 152(4): 923-935.
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    Hansmeier N, Chao TC, Pühler A, Tauch A, Kalinowski J (2006)
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    PROTEOMICS 6(1): 233-250.
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    Seibold G, Auchter M, Berens S, Kalinowski J, Eikmanns BJ (2006)
    Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: Growth and lysine production.
    JOURNAL OF BIOTECHNOLOGY 124(2): 381-391.
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    Brockmann-Gretza O, Kalinowski J (2006)
    Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p) ppGpp synthase.
    BMC Genomics 7(1): 230.
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    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895365
    Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W (2006)
    Emerging Corynebacterium glutamicum systems biology.
    Journal of Biotechnology 124(1): 74-92.
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    Mormann S, Lömker A, Rückert C, Gaigalat L, Tauch A, Pühler A, Kalinowski J (2006)
    Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway.
    BMC Genomics 7(1): 205.
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    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599211
    Mahne M, Tauch A, Pühler A, Kalinowski J (2006)
    The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins.
    FEMS MICROBIOLOGY LETTERS 259(2): 226-233.
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    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598225
    Valbuena N, Letek M, Ramos A, Ayala J, Nakunst D, Kalinowski J, Mateos LM, Gil JA (2006)
    Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of Ftsl.
    MICROBIOLOGY-SGM 152(8): 2491-2503.
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    2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2906740
    Heinz D, Bott M, Kalinowski J, Niefind K, Rakors R, Wendisch VF (2005)
    The Transparent Cell.
    In: BIOTECHNOLOGY 2020 – From the Transparent Cell to the Custom-designed Process. European Commision: 8-15.
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    Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisakova V, Patek M, Kalinowski J, Brune I, Pühler A, Tauch A (2005)
    Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genorne-wide transcriptional profiling.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(6): 3255-3268.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603821
    Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J (2005)
    The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.
    MOLECULAR MICROBIOLOGY 56(4): 871-887.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601771 OA
    Rückert C, Koch DJ, Rey DA, Albersmeier A, Mormann S, Pühler A, Kalinowski J (2005)
    Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction.
    BMC Genomics 6(1): 121.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
     
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602017
    Koch DJ, Rückert C, Rey DA, Mix A, Pühler A, Kalinowski J (2005)
    Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(10): 6104-6114.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602137
    Koch DJ, Rückert C, Albersmeier A, Hüser AT, Tauch A, Pühler A, Kalinowski J (2005)
    The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate.
    Mol Microbiol 58(2): 480-494.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601955
    Silberbach M, Hüser AT, Kalinowski J, Pühler A, Walter B, Kramer R, Burkovski A (2005)
    DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum.
    JOURNAL OF BIOTECHNOLOGY 119(4): 357-367.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
    Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker-Bekel S, Viehöver P, Pühler A (2005)
    Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
    Journal of Bacteriology 187(13): 4671-4682.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773606 OA
    Brune I, Brinkrolf K, Kalinowski J, Pühler A, Tauch A (2005)
    The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences.
    BMC Genomics 6(1): 86.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1602146
    Beckers G, Strosser J, Hildebrandt U, Kalinowski J, Farwick M, Kramer R, Burkovski A (2005)
    Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon.
    MOLECULAR MICROBIOLOGY 58(2): 580-595.
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    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603889
    Silberbach M, Schafer M, Hüser AT, Kalinowski J, Pühler A, Kramer R, Burkovski A (2005)
    Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71(5): 2391-2402.
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    2004 | Sammelwerksbeitrag | PUB-ID: 2906741
    Heinz D, Bott M, Kalinowski J, Niefind K, Takors R, Wendisch VF (2004)
    Die gläserne Zelle.
    In: BIOTECHNOLOGIE 2020 - Von der gläsernen Zelle zum maßgeschneiderten Prozess. DECHEMA: 6-13.
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    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608687
    Küster H, Hohnjec N, Krajinski F, El Yahyaoui F, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, Gianinazzi-Pearson V, Pühler A, Gamas P, Becker A (2004)
    Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.
    JOURNAL OF BIOTECHNOLOGY 108(2): 95-113.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [56]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608839
    McHardy AC, Pühler A, Kalinowski J, Meyer F (2004)
    Comparing expression level-dependent features in codon usage with protein abundance: An analysis of 'predictive proteomics'.
    PROTEOMICS 4(1): 46-58.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [55]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606270
    Hartmann M, Barsch A, Niehaus K, Pühler A, Tauch A, Kalinowski J (2004)
    The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum.
    ARCHIVES OF MICROBIOLOGY 182(4): 299-312.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [54]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1606500
    Tauch A, Bischoff N, Pühler A, Kalinowski J (2004)
    Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
    PLASMID 52(2): 102-118.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [53]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773130 OA
    Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Pühler A, Kalinowski J (2004)
    Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.
    J Biotechnol 112(1-2): 177-193.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [52]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
    Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
    EMMA: a platform for consistent storage and efficient analysis of microarray data.
    JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [51]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612397
    Tauch A, Bischoff N, Brune I, Kalinowski J (2003)
    Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence.
    PLASMID 49(1): 63-74.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [50]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610269
    Rückert C, Pühler A, Kalinowski J (2003)
    Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation.
    JOURNAL OF BIOTECHNOLOGY 104(1-3): 213-228.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [49]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609350
    Watt SA, Patschkowski T, Kalinowski J, Niehaus K (2003)
    Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT).
    Journal of Biotechnology 106(2-3): 287-300.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [48]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611014
    Brand S, Niehaus K, Pühler A, Kalinowski J (2003)
    Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope.
    Archives of Microbiology 180(1): 33-44.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [47]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610260
    Hartmann M, Tauch A, Eggeling L, Bathe B, Mockel B, Pühler A, Kalinowski J (2003)
    Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum.
    J Biotechnol 104(1-3): 199-211.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [46]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612500
    Puehler F, Schwarz H, Waidner B, Kalinowski J, Kaspers B, Bereswill S, Staeheli P (2003)
    An interferon-gamma-binding protein of novel structure encoded by the fowlpox virus.
    JOURNAL OF BIOLOGICAL CHEMISTRY 278(9): 6905-6911.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [45]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610274
    McHardy AC, Tauch A, Rückert C, Pühler A, Kalinowski J (2003)
    Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum.
    J Biotechnol 104(1-3): 229-240.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [44]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880 OA
    Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
    GenDB - an open source genome annotation system for prokaryote genomes.
    Nucleic Acids Research 31(8): 2187-2195.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [43]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610254
    Tauch A, Pühler A, Kalinowski J, Thierbach G (2003)
    Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics.
    JOURNAL OF BIOTECHNOLOGY 104(1-3): 27-40.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [42]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1611276
    Rey DA, Pühler A, Kalinowski J (2003)
    The putative transcriptional repressor McbR, member of the TetR-family, is involved in the regulation of the metabolic network directing the synthesis of sulfur containing amino acids in Corynebacterium glutamicum.
    JOURNAL OF BIOTECHNOLOGY 103(1): 51-65.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [41]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609339
    Hüser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Pühler A, Wiegräbe I, Tauch A (2003)
    Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source.
    JOURNAL OF BIOTECHNOLOGY 106(2-3): 269-286.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [40]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
    Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Pühler A, Rey DA, Rückert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A (2003)
    The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
    Journal of Biotechnology 104(1-3): 5-25.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [39]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613421
    Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
    The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.
    Plasmid 48(2): 117-129.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [38]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613598
    Tauch A, Kirchner O, Löffler B, Götker S, Pühler A, Kalinowski J (2002)
    Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1.
    CURRENT MICROBIOLOGY 45(5): 362-367.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [37]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1614539
    Claes WA, Pühler A, Kalinowski J (2002)
    Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle.
    J Bacteriol 184(10): 2728-2739.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [36]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
    Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R (2002)
    PathFinder: reconstruction and dynamic visualization of metabolic pathways.
    BIOINFORMATICS 18(1): 124-129.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [35]
    2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1613526
    Tauch A, Götker S, Pühler A, Kalinowski J, Thierbach G (2002)
    The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains.
    JOURNAL OF BIOTECHNOLOGY 99(1): 79-91.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [34]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616804
    Tauch A, Wehmeier L, Gotker S, Pühler A, Kalinowski J (2001)
    Relaxed rrn expression and amino acid requirement of a Corynebacterium glutamicum rel mutant defective in (p)ppGpp metabolism.
    FEMS Microbiol Lett 201(1): 53-58.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [33]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616981
    Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Pühler A, Bendt AK, Kramer R, Burkovski A (2001)
    Proteome analysis of Corynebacterium glutamicum.
    ELECTROPHORESIS 22(9): 1712-1723.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1617736
    Wehmeier L, Brockmann-Gretza O, Pisabarro A, Tauch A, Pühler A, Martin JF, Kalinowski J (2001)
    A Corynebacterium glutamicum mutant with a defined deletion within the rpIK gene is impaired in (p)ppGpp accumulation upon amino acid starvation.
    Microbiology 147: 691-700.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [31]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1620384
    Tauch A, Krieft S, Kalinowski J, Pühler A (2000)
    The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens.
    MOLECULAR AND GENERAL GENETICS 263(1): 1-11.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [30]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1618501
    Tauch A, Pühler A, Kalinowski J, Thierbach G (2000)
    TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems.
    PLASMID 44(3): 285-291.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [29]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621449
    Elischewski F, Pühler A, Kalinowski J (1999)
    Pantothenate production in Escherichia coli K12 by enhanced expression of the panE gene encoding ketopantoate reductase.
    JOURNAL OF BIOTECHNOLOGY 75(2-3): 135-146.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [28]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623329
    Tauch A, Krieft S, Pühler A, Kalinowski J (1999)
    The tetAB genes of the Corynebacterium striatum R-plasmid pTP10 encode an ABC transporter and confer tetracycline, oxytetracycline and oxacillin resistance in Corynebacterium glutamicum.
    FEMS Microbiol Lett 173(1): 203-209.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [27]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1623284
    Dusch N, Pühler A, Kalinowski J (1999)
    Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli.
    Appl Environ Microbiol 65(4): 1530-1539.
    PUB | WoS | PubMed | Europe PMC | GenBank
     
  • [26]
    1999 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1621156
    Quast K, Bathe B, Pühler A, Kalinowski J (1999)
    The Corynebacterium glutamicum insertion sequence ISCg2 prefers conserved target sequences located adjacent to genes involved in aspartate and glutamate metabolism.
    Mol Gen Genet 262(3): 568-578.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [25]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626331
    Götting C, Thierbach G, Pühler A, Kalinowski J (1998)
    Versatile low-copy-number plasmids for temperature-inducible overexpression of bacterial genes in Escherichia coli.
    BIOTECHNIQUES 24(3): 362-+.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1904807
    Peters-Wendisch P, Kreutzer C, Kalinowski J, Pátek M, Sahm H, Eikmanns BJ (1998)
    Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene.
    Microbiology-Sgm 144(4): 915-927.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [23]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1624721
    Tauch A, Zheng ZX, Pühler A, Kalinowski J (1998)
    Corynebacterium striatum chloramphenicol resistance transposon Tn5564: Genetic organization and transposition in Corynebacterium glutamicum.
    Plasmid 40(2): 126-139.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [22]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625135
    Wehmeier L, Schafer A, Burkovski A, Kramer R, Mechold U, Malke H, Pühler A, Kalinowski J (1998)
    The role of the Corynebacterium glutamicum rel gene in (p)ppGpp metabolism.
    Microbiology 144(7): 1853-1862.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [21]
    1998 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1625704
    Tauch A, Hermann T, Burkovski A, Kramer R, Pühler A, Kalinowski J (1998)
    Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product.
    ARCHIVES OF MICROBIOLOGY 169(4): 303-312.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [20]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1626635
    Schäfer A, Tauch A, Droste N, Pühler A, Kalinowski J (1997)
    The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain.
    Gene 203(2): 95-101.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [19]
    1997 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637471
    Jäger W, Kalinowski J, Pühler A (1997)
    A Corynebacterium glutamicum gene conferring multidrug resistance in the heterologous host Escherichia coli.
    J Bacteriol 179(7): 2449-2451.
    PUB | WoS | PubMed | Europe PMC | GenBank
     
  • [18]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1637976
    Fernandez-Gonzalez C, Gil JA, Mateos LM, Schwarzer A, Schafer A, Kalinowski J, Pühler A, Martin JF (1996)
    Construction of L-lysine-overproducing strains of Brevibacterium lactofermentum by targeted disruption of the hom and thrB genes.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 46(5-6): 554-558.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638621
    Jäger W, Peters-Wendisch P, Kalinowski J, Pühler A (1996)
    A Corynebacterium glutamicum gene encoding a two-domain protein similar to biotin carboxylases and biotin-carboxyl-carrier proteins.
    Arch Microbiol 166(2): 76-82.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [16]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638387
    Bathe B, Kalinowski J, Pühler A (1996)
    A physical and genetic map of the Corynebacterium glutamicum ATCC 13032 chromosome.
    MOLECULAR & GENERAL GENETICS 252(3): 255-265.
    PUB | WoS | PubMed | Europe PMC
     
  • [15]
    1996 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1638415
    Mateos LM, Schäfer A, Kalinowski J, Martin JF, Pühler A (1996)
    Integration of narrow-host-range vectors from Escherichia coli into the genomes of amino acid-producing corynebacteria after intergeneric conjugation.
    JOURNAL OF BACTERIOLOGY 178(19): 5768-5775.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1641658
    Jäger W, Schäfer A, Kalinowski J, Pühler A (1995)
    Isolation of insertion elements from gram-positive Brevibacterium, Corynebacterium and Rhodococcus strains using the Bacillus subtilis sacB gene as a positive selection marker.
    FEMS MICROBIOLOGY LETTERS 126(1): 1-6.
    PUB | WoS | PubMed | Europe PMC
     
  • [13]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1640693
    Tauch A, Kassing F, Kalinowski J, Pühler A (1995)
    The erythromycin resistance gene of the Corynebacterium xerosis R-plasmid pTP10 also carrying chloramphenicol, kanamycin, and tetracycline resistances is capable of transposition in Corynebacterium glutamicum.
    PLASMID 33(3): 168-179.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    1995 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1639972
    Tauch A, KASSING F, Kalinowski J, Pühler A (1995)
    The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX.
    Plasmid 34(2): 119-131.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [11]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1644393
    Schäfer A, Kalinowski J, Pühler A (1994)
    Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY 60(2): 756-759.
    PUB | WoS | PubMed | Europe PMC
     
  • [10]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642272
    Tauch A, Kirchner O, Wehmeier L, Kalinowski J, Pühler A (1994)
    Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli.
    FEMS MICROBIOLOGY LETTERS 123(3): 343-347.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1643046
    SCHAEFER A, Tauch A, JAEGER W, Kalinowski J, THIERBACH G, Pühler A (1994)
    Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.
    Gene 145(1): 69-73.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [8]
    1994 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1642103
    Schäfer A, Schwarzer A, Kalinowski J, Pühler A (1994)
    Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli.
    J Bacteriol 176(23): 7309-7319.
    PUB | WoS | PubMed | Europe PMC | GenBank
     
  • [7]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649702
    Schrumpf B, Schwarzer A, Kalinowski J, Pühler A, Eggeling L, Sahm H (1991)
    A functionally split pathway for lysine synthesis in Corynebacterium glutamicium.
    Journal of Bacteriology 173(14): 4510-4516.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1649978
    Kalinowski J, Cremer J, Bachmann B, Eggeling L, Sahm H, Pühler A (1991)
    Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum.
    MOLECULAR MICROBIOLOGY 5(5): 1197-1204.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [5]
    1991 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1648831
    Seep-Feldhaus AH, Kalinowski J, Pühler A (1991)
    Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake.
    MOLECULAR MICROBIOLOGY 5(12): 2995-3005.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1629917
    Kalinowski J, Bachmann B, Thierbach G, Pühler A (1990)
    Aspartokinase genes lysC alpha and lysC beta overlap and are adjacent to the aspartate beta-semialdehyde dehydrogenase gene asd in Corynebacterium glutamicum.
    MOLECULAR & GENERAL GENETICS 224(3): 317-324.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [3]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652001
    Thierbach G, Kalinowski J, Bachmann B, Pühler A (1990)
    Cloning of a DNA fragment from Corynebacterium glutamicum conferring aminoethyl cysteine resistance and feedback resistance to aspartokinase.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 32(4): 443-448.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    1990 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1651883
    Schäfer A, Kalinowski J, Simon R, Seep-Feldhaus AH, Pühler A (1990)
    High-frequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria.
    JOURNAL OF BACTERIOLOGY 172(3): 1663-1666.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    1989 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1652907
    PRIEFER UB, Kalinowski J, RUGER B, HEUMANN W, Pühler A (1989)
    ISR1, A TRANSPOSABLE DNA-SEQUENCE RESIDENT IN RHIZOBIUM CLASS-IV STRAINS, SHOWS STRUCTURAL CHARACTERISTICS OF CLASSICAL INSERTION ELEMENTS.
    PLASMID 21(2): 120-128.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
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