Complete genome sequence of Streptomyces lividans TK24

Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Rückert, ChristianUniBi ; Albersmeier, AndreasUniBi; Busche, TobiasUniBi; Jaenicke, SebastianUniBi; Winkler, AnikaUniBi; Friðjónsson, Ólafur H; Hreggviðsson, Guðmundur Óli; Lambert, Christophe; Badcock, Daniel; Bernaerts, Kristel; Anne, Jozef; Economou, Anastassios
Alle
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Abstract / Bemerkung
: Streptomyces lividans TK24 is the standard host for the heterologous expression of a number of different proteins and antibiotic-synthesizing enzymes. As such, it is often used as an experimental microbial cell factory for the production of secreted heterologous proteins including human cytokines and industrial enzymes, and of several antibiotics. It accepts methylated DNA and is an ideal Streptomyces cloning system. Here, we report the complete genome sequence of S. lividans TK24 that includes a plasmid-less genome of 8.345Mbp (72.24% G+C content).
Erscheinungsjahr
2015
Zeitschriftentitel
Journal of Biotechnology
Band
199
Seite(n)
21-22
ISSN
1873-4863
Page URI
https://pub.uni-bielefeld.de/record/2719877

Zitieren

Rückert C, Albersmeier A, Busche T, et al. Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology. 2015;199:21-22.
Rückert, C., Albersmeier, A., Busche, T., Jaenicke, S., Winkler, A., Friðjónsson, Ó. H., Hreggviðsson, G. Ó., et al. (2015). Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology, 199, 21-22. doi:10.1016/j.jbiotec.2015.02.004
Rückert, Christian, Albersmeier, Andreas, Busche, Tobias, Jaenicke, Sebastian, Winkler, Anika, Friðjónsson, Ólafur H, Hreggviðsson, Guðmundur Óli, et al. 2015. “Complete genome sequence of Streptomyces lividans TK24”. Journal of Biotechnology 199: 21-22.
Rückert, C., Albersmeier, A., Busche, T., Jaenicke, S., Winkler, A., Friðjónsson, Ó. H., Hreggviðsson, G. Ó., Lambert, C., Badcock, D., Bernaerts, K., et al. (2015). Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology 199, 21-22.
Rückert, C., et al., 2015. Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology, 199, p 21-22.
C. Rückert, et al., “Complete genome sequence of Streptomyces lividans TK24”, Journal of Biotechnology, vol. 199, 2015, pp. 21-22.
Rückert, C., Albersmeier, A., Busche, T., Jaenicke, S., Winkler, A., Friðjónsson, Ó.H., Hreggviðsson, G.Ó., Lambert, C., Badcock, D., Bernaerts, K., Anne, J., Economou, A., Kalinowski, J.: Complete genome sequence of Streptomyces lividans TK24. Journal of Biotechnology. 199, 21-22 (2015).
Rückert, Christian, Albersmeier, Andreas, Busche, Tobias, Jaenicke, Sebastian, Winkler, Anika, Friðjónsson, Ólafur H, Hreggviðsson, Guðmundur Óli, Lambert, Christophe, Badcock, Daniel, Bernaerts, Kristel, Anne, Jozef, Economou, Anastassios, and Kalinowski, Jörn. “Complete genome sequence of Streptomyces lividans TK24”. Journal of Biotechnology 199 (2015): 21-22.

22 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Different Secondary Metabolite Profiles of Phylogenetically almost Identical Streptomyces griseus Strains Originating from Geographically Remote Locations.
Sottorff I, Wiese J, Lipfert M, Preußke N, Sönnichsen FD, Imhoff JF., Microorganisms 7(6), 2019
PMID: 31174336
Studies on Antibacterial Activity and Diversity of Cultivable Actinobacteria Isolated from Mangrove Soil in Futian and Maoweihai of China.
Li F, Liu S, Lu Q, Zheng H, Osterman IA, Lukyanov DA, Sergiev PV, Dontsova OA, Liu S, Ye J, Huang D, Sun C., Evid Based Complement Alternat Med 2019(), 2019
PMID: 31281398
Four thiol-oxidoreductases involved in the formation of disulphide bonds in the Streptomyces lividans TK21 secretory proteins.
Gullón S, Marín S, Mellado RP., Microb Cell Fact 18(1), 2019
PMID: 31345224
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans.
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M., Biotechnol Prog 34(1), 2018
PMID: 28960883
Comprehensive subcellular topologies of polypeptides in Streptomyces.
Tsolis KC, Tsare EP, Orfanoudaki G, Busche T, Kanaki K, Ramakrishnan R, Rousseau F, Schymkowitz J, Rückert C, Kalinowski J, Anné J, Karamanou S, Klapa MI, Economou A., Microb Cell Fact 17(1), 2018
PMID: 29544487
Antioxidative Potential of a Streptomyces sp. MUM292 Isolated from Mangrove Soil.
Tan LT, Chan KG, Chan CK, Khan TM, Lee LH, Goh BH., Biomed Res Int 2018(), 2018
PMID: 29805975
The Cellular Mechanisms that Ensure an Efficient Secretion in Streptomyces.
Gullón S, Mellado RP., Antibiotics (Basel) 7(2), 2018
PMID: 29661993
Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion.
Busche T, Tsolis KC, Koepff J, Rebets Y, Rückert C, Hamed MB, Bleidt A, Wiechert W, Lopatniuk M, Yousra A, Anné J, Karamanou S, Oldiges M, Kalinowski J, Luzhetskyy A, Economou A., Front Microbiol 9(), 2018
PMID: 29915569
Modelling the metabolism of protein secretion through the Tat route in Streptomyces lividans.
Valverde JR, Gullón S, Mellado RP., BMC Microbiol 18(1), 2018
PMID: 29898665
Activation of microbial secondary metabolic pathways: Avenues and challenges.
Baral B, Akhgari A, Metsä-Ketelä M., Synth Syst Biotechnol 3(3), 2018
PMID: 30345402
An efficient blue-white screening system for markerless deletions and stable integrations in Streptomyces chromosomes based on the blue pigment indigoidine biosynthetic gene bpsA.
Rezuchova B, Homerova D, Sevcikova B, Núñez LE, Novakova R, Feckova L, Skultety L, Cortés J, Kormanec J., Appl Microbiol Biotechnol 102(23), 2018
PMID: 30259098
Comparative Genomics among Closely Related Streptomyces Strains Revealed Specialized Metabolite Biosynthetic Gene Cluster Diversity.
Vicente CM, Thibessard A, Lorenzi JN, Benhadj M, Hôtel L, Gacemi-Kirane D, Lespinet O, Leblond P, Aigle B., Antibiotics (Basel) 7(4), 2018
PMID: 30279346
Heterologous Expression of the Nybomycin Gene Cluster from the Marine Strain Streptomyces albus subsp. chlorinus NRRL B-24108.
Rodríguez Estévez M, Myronovskyi M, Gummerlich N, Nadmid S, Luzhetskyy A., Mar Drugs 16(11), 2018
PMID: 30400361
Impacts of horizontal gene transfer on the compact genome of the clavulanic acid-producing Streptomyces strain F613-1.
Li J, Zhao Z, Zhong W, Zhong C, Zong G, Fu J, Cao G., 3 Biotech 8(11), 2018
PMID: 30456006
Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions.
Koepff J, Sachs CC, Wiechert W, Kohlheyer D, Nöh K, Oldiges M, Grünberger A., Front Microbiol 9(), 2018
PMID: 30524383
Characterization of Sigma Factor Genes in Streptomyces lividans TK24 Using a Genomic Library-Based Approach for Multiple Gene Deletions.
Rebets Y, Tsolis KC, Guðmundsdóttir EE, Koepff J, Wawiernia B, Busche T, Bleidt A, Horbal L, Myronovskyi M, Ahmed Y, Wiechert W, Rückert C, Hamed MB, Bilyk B, Anné J, Friðjónsson Ó, Kalinowski J, Oldiges M, Economou A, Luzhetskyy A., Front Microbiol 9(), 2018
PMID: 30619125
Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein.
Daniels W, Bouvin J, Busche T, Rückert C, Simoens K, Karamanou S, Van Mellaert L, Friðjónsson ÓH, Nicolai B, Economou A, Kalinowski J, Anné J, Bernaerts K., Microb Cell Fact 17(1), 2018
PMID: 30577858
Fast and reliable strain characterization of Streptomyces lividans through micro-scale cultivation.
Koepff J, Keller M, Tsolis KC, Busche T, Rückert C, Hamed MB, Anné J, Kalinowski J, Wiechert W, Economou A, Oldiges M., Biotechnol Bioeng 114(9), 2017
PMID: 28436005
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.
Nouioui I, Rückert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SB., Antonie Van Leeuwenhoek 110(12), 2017
PMID: 28770445
Large-scale production of a thermostable Rhodothermus marinus cellulase by heterologous secretion from Streptomyces lividans.
Hamed MB, Karamanou S, Ólafsdottir S, Basílio JSM, Simoens K, Tsolis KC, Van Mellaert L, Guðmundsdóttir EE, Hreggvidsson GO, Anné J, Bernaerts K, Fridjonsson OH, Economou A., Microb Cell Fact 16(1), 2017
PMID: 29274637
Deciphering the streamlined genome of Streptomyces xiamenensis 318 as the producer of the anti-fibrotic drug candidate xiamenmycin.
Xu MJ, Wang JH, Bu XL, Yu HL, Li P, Ou HY, He Y, Xu FD, Hu XY, Zhu XM, Ao P, Xu J., Sci Rep 6(), 2016
PMID: 26744183
The Three Streptomyces lividans HtrA-Like Proteases Involved in the Secretion Stress Response Act in a Cooperative Manner.
Vicente RL, Gullón S, Marín S, Mellado RP., PLoS One 11(12), 2016
PMID: 27977736

19 References

Daten bereitgestellt von Europe PubMed Central.

Protein secretion biotechnology in Gram-positive bacteria with special emphasis on Streptomyces lividans.
Anne J, Vrancken K, Van Mellaert L, Van Impe J, Bernaerts K., Biochim. Biophys. Acta 1843(8), 2014
PMID: 24412306
Investigations into viomycin biosynthesis by using heterologous production in Streptomyces lividans.
Barkei JJ, Kevany BM, Felnagle EA, Thomas MG., Chembiochem 10(2), 2009
PMID: 19105177
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).
Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA., Nature 417(6885), 2002
PMID: 12000953
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.
Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, Weber T., Nucleic Acids Res. 41(Web Server issue), 2013
PMID: 23737449
The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island.
Cruz-Morales P, Vijgenboom E, Iruegas-Bocardo F, Girard G, Yanez-Guerra LA, Ramos-Aboites HE, Pernodet JL, Anne J, van Wezel GP, Barona-Gomez F., Genome Biol Evol 5(6), 2013
PMID: 23709624
Viewing and editing assembled sequences using Consed
Gordon, Curr. Protoc. Bioinform. (), 2003
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico.
Hopwood DA., Microbiology (Reading, Engl.) 145 ( Pt 9)(), 1999
PMID: 10517572
Bioethanol production by heterologous expression of Pdc and AdhII in Streptomyces lividans.
Lee JS, Chi WJ, Hong SK, Yang JW, Chang YK., Appl. Microbiol. Biotechnol. 97(13), 2013
PMID: 23681589
A multidrug efflux system is involved in colony growth in Streptomyces lividans.
Lee LF, Chen YJ, Kirby R, Chen C, Chen CW., Microbiology (Reading, Engl.) 153(Pt 4), 2007
PMID: 17379703
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
Mentz A, Neshat A, Pfeifer-Sancar K, Puhler A, Ruckert C, Kalinowski J., BMC Genomics 14(), 2013
PMID: 24138339
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
Pfeifer-Sancar K, Mentz A, Ruckert C, Kalinowski J., BMC Genomics 14(), 2013
PMID: 24341750
Complete genome sequence of the kirromycin producer Streptomyces collinus Tu 365 consisting of a linear chromosome and two linear plasmids.
Ruckert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Puhler A, Kalinowski J, Weber T., J. Biotechnol. 168(4), 2013
PMID: 24140291
Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.
Schwientek P, Neshat A, Kalinowski J, Klein A, Ruckert C, Schneiker-Bekel S, Wendler S, Stoye J, Puhler A., J. Biotechnol. 190(), 2014
PMID: 24642337
Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology.
Schwientek P, Szczepanowski R, Ruckert C, Stoye J, Puhler A., J. Biotechnol. 155(1), 2011
PMID: 21536083
Efficient bioconversion of echinocandin B to its nucleus by overexpression of deacylase genes in different host strains.
Shao L, Li J, Liu A, Chang Q, Lin H, Chen D., Appl. Environ. Microbiol. 79(4), 2012
PMID: 23220968
Cloning and heterologous expression of P450Um-1, a novel bacterial P450 gene, for hydroxylation of immunosuppressive agent AS1387392.
Ueno M, Sasamura S, Yamashita M, Shigematsu N, Hashimoto M, Hino M, Fujie A., J. Antibiot. 63(11), 2010
PMID: 20924385
Chassis organism from Corynebacterium glutamicum--a top-down approach to identify and delete irrelevant gene clusters.
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Bruhl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Kramer R, Seibold G, Frunzke J, Kalinowski J, Ruckert C, Wendisch VF, Noack S., Biotechnol J 10(2), 2014
PMID: 25139579
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 25680930
PubMed | Europe PMC

Suchen in

Google Scholar