Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid

Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C (2014)
Journal of biotechnology 189: 46-47.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Stegmann, Evi; Albersmeier, AndreasUniBi; Spohn, Marius; Gert, Helena; Weber, Tilmann; Wohlleben, Wolfgang; Kalinowski, JörnUniBi; Rückert, ChristianUniBi
Abstract / Bemerkung
: We report the complete genome sequence of Amycolatopsis japonica MG417-CF17(T) (=DSM 44213(T)) which was identified as the producer of (S,S)-N,N'-ethylenediamine-disuccinic acid during a screening for phospholipase C inhibitors. The genome of A. japonica MG417-CF17(T) consists of two replicons: the chromosome (8,961,318 bp, 68.89 % G+C content) and the plasmid pAmyja1 (92,539 bp, 68.23 % G+C content), encoding a total of 8,422 protein coding genes. Analysis of the sequence data revealed 30 clusters encoding the biosynthesis of secondary metabolites.
Erscheinungsjahr
2014
Zeitschriftentitel
Journal of biotechnology
Band
189
Seite(n)
46-47
ISSN
0168-1656
eISSN
1873-4863
Page URI
https://pub.uni-bielefeld.de/record/2693535

Zitieren

Stegmann E, Albersmeier A, Spohn M, et al. Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology. 2014;189:46-47.
Stegmann, E., Albersmeier, A., Spohn, M., Gert, H., Weber, T., Wohlleben, W., Kalinowski, J., et al. (2014). Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology, 189, 46-47. doi:10.1016/j.jbiotec.2014.08.034
Stegmann, Evi, Albersmeier, Andreas, Spohn, Marius, Gert, Helena, Weber, Tilmann, Wohlleben, Wolfgang, Kalinowski, Jörn, and Rückert, Christian. 2014. “Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid”. Journal of biotechnology 189: 46-47.
Stegmann, E., Albersmeier, A., Spohn, M., Gert, H., Weber, T., Wohlleben, W., Kalinowski, J., and Rückert, C. (2014). Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology 189, 46-47.
Stegmann, E., et al., 2014. Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology, 189, p 46-47.
E. Stegmann, et al., “Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid”, Journal of biotechnology, vol. 189, 2014, pp. 46-47.
Stegmann, E., Albersmeier, A., Spohn, M., Gert, H., Weber, T., Wohlleben, W., Kalinowski, J., Rückert, C.: Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid. Journal of biotechnology. 189, 46-47 (2014).
Stegmann, Evi, Albersmeier, Andreas, Spohn, Marius, Gert, Helena, Weber, Tilmann, Wohlleben, Wolfgang, Kalinowski, Jörn, and Rückert, Christian. “Complete Genome Sequence of the Actinobacterium Amycolatopsis japonica MG417-CF17T (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid”. Journal of biotechnology 189 (2014): 46-47.

6 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

The Immunosuppressant Brasilicardin: Determination of the Biosynthetic Gene Cluster in the Heterologous Host Amycolatopsis japonicum.
Schwarz PN, Buchmann A, Roller L, Kulik A, Gross H, Wohlleben W, Stegmann E., Biotechnol J 13(2), 2018
PMID: 29045029
Identification and activation of novel biosynthetic gene clusters by genome mining in the kirromycin producer Streptomyces collinus Tü 365.
Iftime D, Kulik A, Härtner T, Rohrer S, Niedermeyer TH, Stegmann E, Weber T, Wohlleben W., J Ind Microbiol Biotechnol 43(2-3), 2016
PMID: 26433383
Genetics and Genomics of the Genus Amycolatopsis.
Kumari R, Singh P, Lal R., Indian J Microbiol 56(3), 2016
PMID: 27407288
A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus.
Tang B, Xie F, Zhao W, Wang J, Dai S, Zheng H, Ding X, Cen X, Liu H, Yu Y, Zhou H, Zhou Y, Zhang L, Goodfellow M, Zhao GP., Synth Syst Biotechnol 1(3), 2016
PMID: 29062941
Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C., J Biotechnol 194(), 2015
PMID: 25499805

17 References

Daten bereitgestellt von Europe PubMed Central.

Validation of the publication of new names and new combinations previously effectively published outside the IJSB, List No. 63
Anonymous, Int. J. Syst. Bacteriol. 47(), 1997
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.
Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, Weber T., Nucleic Acids Res. 41(Web Server issue), 2013
PMID: 23737449
Amycolatopsis japonicum sp. nov, an actinomycete producing (S,S)-N,N′-ethylenediaminedisuccinic acid
Goodfellow, Syst. Appl. Microbiol. 20(), 1997
Viewing and editing assembled sequences using consed
Gordon, Curr. Protoc. Bioinform. (), 2003
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Jankowitsch F, Schwarz J, Ruckert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M., J. Bacteriol. 194(24), 2012
PMID: 23043000
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Complete genome sequence of Streptomyces fulvissimus.
Myronovskyi M, Tokovenko B, Manderscheid N, Petzke L, Luzhetskyy A., J. Biotechnol. 168(1), 2013
PMID: 23965270
Production by actinomycetes of (S,S)-N,N'-ethylenediamine-disuccinic acid, an inhibitor of phospholipase C.
Nishikiori T, Okuyama A, Naganawa H, Takita T, Hamada M, Takeuchi T, Aoyagi T, Umezawa H., J. Antibiot. 37(4), 1984
PMID: 6327594
Complete genome sequence of the actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.
Ruckert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkamper A, Puhler A, Biener R, Schwartz D, Kalinowski J., J. Biotechnol. 178(), 2014
PMID: 24637369
Complete genome sequence of the kirromycin producer Streptomyces collinus Tu 365 consisting of a linear chromosome and two linear plasmids.
Ruckert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Puhler A, Kalinowski J, Weber T., J. Biotechnol. 168(4), 2013
PMID: 24140291
Biodegradation of [S,S], [R,R] and mixed stereoisomers of ethylene diamine disuccinic acid (EDDS), a transition metal chelator.
Schowanek D, Feijtel TC, Perkins CM, Hartman FA, Federle TW, Larson RJ., Chemosphere 34(11), 1997
PMID: 9192467
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
Schwientek P, Szczepanowski R, Ruckert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Puhler A., BMC Genomics 13(), 2012
PMID: 22443545
Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology.
Schwientek P, Szczepanowski R, Ruckert C, Stoye J, Puhler A., J. Biotechnol. 155(1), 2011
PMID: 21536083
Overproduction of ristomycin A by activation of a silent gene cluster in Amycolatopsis japonicum MG417-CF17
Spohn, AAC (), 2014
Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae.
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Puhler A, Szczepanowski R, Bechthold A, Ruckert C., BMC Genomics 13(), 2012
PMID: 22958348
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 25193710
PubMed | Europe PMC

Suchen in

Google Scholar