Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
BMC Genomics 12(1): 400.
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Autor*in
Hinse, Dennis;
Vollmer, Tanja;
Rückert, ChristianUniBi ;
Blom, JochenUniBi;
Kalinowski, JörnUniBi;
Knabbe, CorneliusUniBi;
Dreier, JensUniBi
Einrichtung
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Institut für Biochemie und Biotechnik
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Chemie > Biochemie I
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Biochemie und Biotechnik
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Chemie > Biochemie I
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Technische Fakultät > Computational Genomics
Abstract / Bemerkung
Background: Streptococcus gallolyticus subsp. gallolyticus is an important causative agent of infectious endocarditis, while the pathogenicity of this species is widely unclear. To gain insight into the pathomechanisms and the underlying genetic elements for lateral gene transfer, we sequenced the entire genome of this pathogen. Results: We sequenced the whole genome of S. gallolyticus subsp. gallolyticus strain ATCC BAA-2069, consisting of a 2,356,444 bp circular DNA molecule with a G+C-content of 37.65% and a novel 20,765 bp plasmid designated as pSGG1. Bioinformatic analysis predicted 2,309 ORFs and the presence of 80 tRNAs and 21 rRNAs in the chromosome. Furthermore, 21 ORFs were detected on the plasmid pSGG1, including tetracycline resistance genes telL and tet(O/W/32/O). Screening of 41 S. gallolyticus subsp. gallolyticus isolates revealed one plasmid (pSGG2) homologous to pSGG1. We further predicted 21 surface proteins containing the cell wall-sorting motif LPxTG, which were shown to play a functional role in the adhesion of bacteria to host cells. In addition, we performed a whole genome comparison to the recently sequenced S. gallolyticus subsp. gallolyticus strain UCN34, revealing significant differences. Conclusions: The analysis of the whole genome sequence of S. gallolyticus subsp. gallolyticus promotes understanding of genetic factors concerning the pathogenesis and adhesion to ECM of this pathogen. For the first time we detected the presence of the mobilizable pSGG1 plasmid, which may play a functional role in lateral gene transfer and promote a selective advantage due to a tetracycline resistance.
Erscheinungsjahr
2011
Zeitschriftentitel
BMC Genomics
Band
12
Ausgabe
1
Art.-Nr.
400
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/2394493
Zitieren
Hinse D, Vollmer T, Rückert C, et al. Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics. 2011;12(1): 400.
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., & Dreier, J. (2011). Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics, 12(1), 400. https://doi.org/10.1186/1471-2164-12-400
Hinse, Dennis, Vollmer, Tanja, Rückert, Christian, Blom, Jochen, Kalinowski, Jörn, Knabbe, Cornelius, and Dreier, Jens. 2011. “Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis”. BMC Genomics 12 (1): 400.
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., and Dreier, J. (2011). Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics 12:400.
Hinse, D., et al., 2011. Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics, 12(1): 400.
D. Hinse, et al., “Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis”, BMC Genomics, vol. 12, 2011, : 400.
Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., Dreier, J.: Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics. 12, : 400 (2011).
Hinse, Dennis, Vollmer, Tanja, Rückert, Christian, Blom, Jochen, Kalinowski, Jörn, Knabbe, Cornelius, and Dreier, Jens. “Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis”. BMC Genomics 12.1 (2011): 400.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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AUTHOR UNKNOWN, 1985
The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.
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GenDB--an open source genome annotation system for prokaryote genomes.
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CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
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Improved microbial gene identification with GLIMMER.
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Improved prediction of signal peptides: SignalP 3.0.
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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
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Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins.
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Simple and rapid method for isolating large plasmid DNA from lactic streptococci.
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