Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics

Tauch A, Pühler A, Kalinowski J, Thierbach G (2003)
JOURNAL OF BIOTECHNOLOGY 104(1-3): 27-40.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Tauch, AndreasUniBi; Pühler, AlfredUniBi ; Kalinowski, JörnUniBi; Thierbach, G
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Tauch
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Fakultät für Biologie
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Abstract / Bemerkung
Endogenous plasmids and selectable resistance markers are a fundamental prerequisite for the development of efficient recombinant DNA techniques in industrial microorganisms. In this article, we therefore summarize the current knowledge about endogenous plasmids in amino acid-producing Corynebacterium glutamicum isolates. Screening studies identified a total of 24 different plasmids ranging in size from 2.4 to 95 kb. Although most of the C glutamicum plasmids were cryptic, four plasmids carried resistance determinants against the antibiotics chloramphenicol, tetracycline, streptomycin-spectinomycin, and sulfonamides. Considerable information is now available on the molecular genetic organization of 12 completely sequenced plasmid genomes from C. glutamicum. The deduced mechanism of plasmid DNA replication and the degree of amino acid sequence similarity among replication initiator proteins was the basis for performing a classification of the plasmids into four distinct C. glutamicum plasmid families. (C) 2003 Elsevier B.V. All rights reserved.
Stichworte
Corynebacterium glutamicum; antibiotic resistance gene; plasmid replication; rolling circle replication; theta replication; plasmid family
Erscheinungsjahr
2003
Zeitschriftentitel
JOURNAL OF BIOTECHNOLOGY
Band
104
Ausgabe
1-3
Seite(n)
27-40
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/1610254

Zitieren

Tauch A, Pühler A, Kalinowski J, Thierbach G. Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY. 2003;104(1-3):27-40.
Tauch, A., Pühler, A., Kalinowski, J., & Thierbach, G. (2003). Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY, 104(1-3), 27-40. https://doi.org/10.1016/S0168-1656(03)00157-3
Tauch, Andreas, Pühler, Alfred, Kalinowski, Jörn, and Thierbach, G. 2003. “Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics”. JOURNAL OF BIOTECHNOLOGY 104 (1-3): 27-40.
Tauch, A., Pühler, A., Kalinowski, J., and Thierbach, G. (2003). Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY 104, 27-40.
Tauch, A., et al., 2003. Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY, 104(1-3), p 27-40.
A. Tauch, et al., “Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics”, JOURNAL OF BIOTECHNOLOGY, vol. 104, 2003, pp. 27-40.
Tauch, A., Pühler, A., Kalinowski, J., Thierbach, G.: Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. JOURNAL OF BIOTECHNOLOGY. 104, 27-40 (2003).
Tauch, Andreas, Pühler, Alfred, Kalinowski, Jörn, and Thierbach, G. “Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics”. JOURNAL OF BIOTECHNOLOGY 104.1-3 (2003): 27-40.

27 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Plasmid copy number mutation in repA gene encoding RepA replication initiator of cryptic plasmid pHM1519 in Corynebacterium glutamicum.
Hashiro S, Yasueda H., Biosci Biotechnol Biochem 82(12), 2018
PMID: 30122124
Expression of recombinant protein using Corynebacterium Glutamicum: progress, challenges and applications.
Liu X, Yang Y, Zhang W, Sun Y, Peng F, Jeffrey L, Harvey L, McNeil B, Bai Z., Crit Rev Biotechnol 36(4), 2016
PMID: 25714007
Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.
Shintani M, Sanchez ZK, Kimbara K., Front Microbiol 6(), 2015
PMID: 25873913
A method for gene amplification and simultaneous deletion in Corynebacterium glutamicum genome without any genetic markers.
Xu J, Xia X, Zhang J, Guo Y, Qian H, Zhang W., Plasmid 72(), 2014
PMID: 24613758
Recent progress in development of synthetic biology platforms and metabolic engineering of Corynebacterium glutamicum.
Woo HM, Park JB., J Biotechnol 180(), 2014
PMID: 24632177
pCGR2 copy number depends on the par locus that forms a ParC-ParB-DNA partition complex in Corynebacterium glutamicum.
Okibe N, Suzuki N, Inui M, Yukawa H., J Appl Microbiol 115(2), 2013
PMID: 23683072
Systems metabolic engineering of Corynebacterium glutamicum for production of the chemical chaperone ectoine.
Becker J, Schäfer R, Kohlstedt M, Harder BJ, Borchert NS, Stöveken N, Bremer E, Wittmann C., Microb Cell Fact 12(), 2013
PMID: 24228689
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A., BMC Genomics 13(), 2012
PMID: 22524407
Design and testing of a synthetic biology framework for genetic engineering of Corynebacterium glutamicum.
Ravasi P, Peiru S, Gramajo H, Menzella HG., Microb Cell Fact 11(), 2012
PMID: 23134565
Efficient markerless gene replacement in Corynebacterium glutamicum using a new temperature-sensitive plasmid.
Okibe N, Suzuki N, Inui M, Yukawa H., J Microbiol Methods 85(2), 2011
PMID: 21362445
Tools for genetic manipulations in Corynebacterium glutamicum and their applications.
Nešvera J, Pátek M., Appl Microbiol Biotechnol 90(5), 2011
PMID: 21519933
A classification system for plasmids from enterococci and other Gram-positive bacteria.
Jensen LB, Garcia-Migura L, Valenzuela AJ, Løhr M, Hasman H, Aarestrup FM., J Microbiol Methods 80(1), 2010
PMID: 19879906
Characterization of a 24-kb plasmid pCGR2 newly isolated from Corynebacterium glutamicum.
Tsuchida Y, Kimura S, Suzuki N, Inui M, Yukawa H., Appl Microbiol Biotechnol 87(5), 2010
PMID: 20552356
Antisense-RNA-mediated plasmid copy number control in pCG1-family plasmids, pCGR2 and pCG1, in Corynebacterium glutamicum.
Okibe N, Suzuki N, Inui M, Yukawa H., Microbiology 156(pt 12), 2010
PMID: 20798162
Genomic insights into bifidobacteria.
Lee JH, O'Sullivan DJ., Microbiol Mol Biol Rev 74(3), 2010
PMID: 20805404
Characterization of a new 2.4-kb plasmid of Corynebacterium casei and development of stable corynebacterial cloning vector.
Tsuchida Y, Kimura S, Suzuki N, Inui M, Yukawa H., Appl Microbiol Biotechnol 81(6), 2009
PMID: 18936936
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network.
Brilli M, Mengoni A, Fondi M, Bazzicalupo M, Liò P, Fani R., BMC Bioinformatics 9(), 2008
PMID: 19099604
A possible heterodimeric prophage-like element in the genome of the insect endosymbiont Sodalis glossinidius.
Clark AJ, Pontes M, Jones T, Dale C., J Bacteriol 189(7), 2007
PMID: 17209029
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum.
Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D., Microbiol Mol Biol Rev 71(3), 2007
PMID: 17804669
Molecular dissection of a bifidobacterial replicon.
Cronin M, Knobel M, O'Connell-Motherway M, Fitzgerald GF, van Sinderen D., Appl Environ Microbiol 73(24), 2007
PMID: 17965208
Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution.
Fernández-López R, Garcillán-Barcia MP, Revilla C, Lázaro M, Vielva L, de la Cruz F., FEMS Microbiol Rev 30(6), 2006
PMID: 17026718
Novel spectinomycin/streptomycin resistance gene, aadA14, from Pasteurella multocida.
Kehrenberg C, Catry B, Haesebrouck F, de Kruif A, Schwarz S., Antimicrob Agents Chemother 49(7), 2005
PMID: 15980396
Analysis of genes involved in arsenic resistance in Corynebacterium glutamicum ATCC 13032.
Ordóñez E, Letek M, Valbuena N, Gil JA, Mateos LM., Appl Environ Microbiol 71(10), 2005
PMID: 16204540
Manipulating corynebacteria, from individual genes to chromosomes.
Vertès AA, Inui M, Yukawa H., Appl Environ Microbiol 71(12), 2005
PMID: 16332735
Antimicrobial resistance and serotype prevalence of Salmonella isolated from dairy cattle in the southwestern United States.
Edrington TS, Schultz CL, Bischoff KM, Callaway TR, Looper ML, Genovese KJ, Jung YS, McReynolds JL, Anderson RC, Nisbet DJ., Microb Drug Resist 10(1), 2004
PMID: 15140394
A plasmid-encoded class 1 integron carrying sat, a putative phosphoserine phosphatase gene and aadA2 from enterotoxigenic Escherichia coli O159 isolated in Japan.
Ahmed AM, Shimamoto T., FEMS Microbiol Lett 235(2), 2004
PMID: 15183870
Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
Tauch A, Bischoff N, Pühler A, Kalinowski J., Plasmid 52(2), 2004
PMID: 15336488

51 References

Daten bereitgestellt von Europe PubMed Central.

Atypical location of double-strand origin of replication (nic site) on the plasmid pGA1 from Corynebacterium glutamicum.
Abrhamova Z, Patek M, Nesvera J., Folia Microbiol. (Praha) 47(4), 2002
PMID: 12422507
A Brevibacterium linens pRBL1 replicon functional in Corynebacterium glutamicum.
Ankri S, Bouvier I, Reyes O, Predali F, Leblon G., Plasmid 36(1), 1996
PMID: 8938050
The DNA sequence and minimal replicon of the Corynebacterium glutamicum plasmid pSR1: evidence of a common ancestry with plasmids from C. diphtheriae.
Archer JA, Sinskey AJ., J. Gen. Microbiol. 139(8), 1993
PMID: 8409918
Interspecies electrotransformation in corynebacteria
Bonamy, FEMS Microbiol. Lett. 66(), 1990
Cloning vectors and antibiotic-resistance markers for Brevibacterium sp. R312.
Chion CK, Duran R, Arnaud A, Galzy P., Gene 105(1), 1991
PMID: 1937001
Structural analysis of the 6 kb cryptic plasmid pFAJ2600 from Rhodococcus erythropolis NI86/21 and construction of Escherichia coli–Rhodococcus shuttle vectors
de, Microbiology 143(), 1997
Rolling circle-replicating plasmids from gram-positive and gram-negative bacteria: a wall falls.
del Solar G, Moscoso M, Espinosa M., Mol. Microbiol. 8(5), 1993
PMID: 8355606
Replication and control of circular bacterial plasmids.
del Solar G, Giraldo R, Ruiz-Echevarria MJ, Espinosa M, Diaz-Orejas R., Microbiol. Mol. Biol. Rev. 62(2), 1998
PMID: 9618448
Characterization of a region of plasmid pBL1 of Brevibacterium lactofermentum involved in replication via the rolling circle model.
Fernandez-Gonzalez C, Cadenas RF, Noirot-Gros MF, Martin JF, Gil JA., J. Bacteriol. 176(11), 1994
PMID: 8195068
Complete nucleotide sequence of a native plasmid of Brevibacterium lactofermentum.
Filpula D, Ally AH, Nagle J., Nucleic Acids Res. 14(12), 1986
PMID: 3453107
A cryptic plasmid pBL1 from Brevibacterium lactofermentum causes growth inhibition and filamentation in Escherichia coli.
Goyal D, Wachi M, Kijima N, Kobayashi M, Yukawa H, Nagai K., Plasmid 36(1), 1996
PMID: 8938054
Comparative analysis of the replicon regions of eleven ColE2-related plasmids.
Hiraga S, Sugiyama T, Itoh T., J. Bacteriol. 176(23), 1994
PMID: 7525540
Improvement of desulfurization activity in Rhodococcus erythropolis KA2-5-1 by genetic engineering.
Hirasawa K, Ishii Y, Kobayashi M, Koizumi K, Maruhashi K., Biosci. Biotechnol. Biochem. 65(2), 2001
PMID: 11302154
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria.
Ilyina TV, Koonin EV., Nucleic Acids Res. 20(13), 1992
PMID: 1630899
Isolation and characterization of a plasmid from Brevibacterium lactofermentum
Kaneko, Agric. Biol. Chem. 43(), 1979
Isolation of plasmids from Brevibacterium
Kato, Agric. Biol. Chem. 53(), 1989
Protoplast transformation of glutamate-producing bacteria with plasmid DNA.
Katsumata R, Ozaki A, Oka T, Furuya A., J. Bacteriol. 159(1), 1984
PMID: 6145700
Characterization of a novel plasmid pXZ608 from Corynebacterium glutamicum.
Lei C, Ren Z, Yang W, Chen Y, Chen D, Liu M, Yan W, Zheng Z., FEMS Microbiol. Lett. 216(1), 2002
PMID: 12423755
Cryptic plasmids in glutamic acid-producing bacteria
Miwa, Agric. Biol. Chem. 48(), 1984
Characterization of the natural deletion mutant of plasmid pXZ10145 in Corynebacterium glutamicum and construction of a recombinant plasmid.
Na S, Shen T, Jia P, Men D, Chen Q., Chin. J. Biotechnol. 7(4), 1991
PMID: 1824239
Plasmid pGA1 from Corynebacterium glutamicum codes for a gene product that positively influences plasmid copy number.
Nesvera J, Patek M, Hochmannova J, Abrhamova Z, Becvarova V, Jelinkova M, Vohradsky J., J. Bacteriol. 179(5), 1997
PMID: 9045809
An integron of class 1 is present on the plasmid pCG4 from gram-positive bacterium Corynebacterium glutamicum.
Nesvera J, Hochmannova J, Patek M., FEMS Microbiol. Lett. 169(2), 1998
PMID: 9868786
The region essential for efficient autonomous replication of pSa in Escherichia coli.
Okumura MS, Kado CI., Mol. Gen. Genet. 235(1), 1992
PMID: 1435731
Functional expression of the genes of Escherichia coli in gram-positive Corynebacterium glutamicum.
Ozaki A, Katsumata R, Oka T, Furuya A., Mol. Gen. Genet. 196(1), 1984
PMID: 6384727
Characterization of the plasmid pMB1 from Bifidobacterium longum and its use for shuttle vector construction.
Rossi M, Brigidi P, Gonzalez Vara y Rodriguez A, Matteuzzi D., Res. Microbiol. 147(3), 1996
PMID: 8761732
Screening of plasmids in non-pathogenic corynebacteria
Sandoval, FEMS Microbiol. Lett. 27(), 1985
Characterization of an endogenous plasmid and development of cloning vectors and a transformation system in Brevibacterium lactofermentum
Santamaria, J. Gen. Microbiol. 130(), 1984
Electrotransformation of intact cells of Brevibacterium flavum MJ-233.
Satoh Y, Hatakeyama K, Kohama K, Kobayashi M, Kurusu Y, Yukawa H., J. Ind. Microbiol. 5(2-3), 1990
PMID: 1366679
The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa.
Schneiker S, Keller M, Droge M, Lanka E, Puhler A, Selbitschka W., Nucleic Acids Res. 29(24), 2001
PMID: 11812851
A host-vector system for an Arthrobacter species.
Shaw PC, Hartley BS., J. Gen. Microbiol. 134(4), 1988
PMID: 2846755
Determination of nucleotide sequence of Corynebacterium plasmid pXZ10145.
Shen T, Jia P, Na S, Men D., Chin. J. Biotechnol. 9(3), 1993
PMID: 8049348
Protoplast transformation in coryneform bacteria and introduction of an alpha-amylase gene from Bacillus amyloliquefaciens into Brevibacterium lactofermentum.
Smith MD, Flickinger JL, Lineberger DW, Schmidt B., Appl. Environ. Microbiol. 51(3), 1986
PMID: 3008649
Characterization of pGA1, a new plasmid from Corynebacterium glutamicum LP-6.
Sonnen H, Thierbach G, Kautz S, Kalinowski J, Schneider J, Puhler A, Kutzner HJ., Gene 107(1), 1991
PMID: 1660431
Functional definition of regions necessary for replication and incompatibility in the Mycobacterium fortuitum plasmid pAL5000.
Stolt P, Stoker NG., Microbiology (Reading, Engl.) 142 ( Pt 10)(), 1996
PMID: 8885395
Protein-DNA interactions in the ori region of the Mycobacterium fortuitum plasmid pAL5000.
Stolt P, Stoker NG., J. Bacteriol. 178(23), 1996
PMID: 8955284
Primer RNA synthesis by plasmid-specified Rep protein for initiation of ColE2 DNA replication.
Takechi S, Matsui H, Itoh T., EMBO J. 14(20), 1995
PMID: 7588642
Isolation of a tetracycline resistance plasmid from a glutamate-producing corynebacterium, Corynebacterium melassecola
Takeda, J. Ferment. Bioeng. 70(), 1990

AUTHOR UNKNOWN, 0
TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems.
Tauch A, Puhler A, Kalinowski J, Thierbach G., Plasmid 44(3), 2000
PMID: 11078655
The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.
Tauch A, Gotker S, Puhler A, Kalinowski J, Thierbach G., Plasmid 48(2), 2002
PMID: 12383729
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere.
Tauch A, Schneiker S, Selbitschka W, Puhler A, van Overbeek LS, Smalla K, Thomas CM, Bailey MJ, Forney LJ, Weightman A, Ceglowski P, Pembroke T, Tietze E, Schroder G, Lanka E, van Elsas JD., Microbiology (Reading, Engl.) 148(Pt 6), 2002
PMID: 12055285
Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence.
Tauch A, Bischoff N, Brune I, Kalinowski J., Plasmid 49(1), 2003
PMID: 12584002
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Thompson JD, Higgins DG, Gibson TJ., Nucleic Acids Res. 22(22), 1994
PMID: 7984417
Structural organization of the Corynebacterium glutamicum plasmid pCG100.
Trautwetter A, Blanco C., J. Gen. Microbiol. 137(9), 1991
PMID: 1748866
Identification of a novel gene involved in stable maintenance of plasmid pGA1 from Corynebacterium glutamicum.
Venkova T, Patek M, Nesvera J., Plasmid 46(3), 2001
PMID: 11735365
Determination of the complete nucleotide sequence of Brevibacterium lactofermentum plasmid pAM330 and analysis of its genetic information.
Yamaguchi R, Terabe M, Miwa K, Tsuchiya M, Takagi H, Morinaga Y, Nakamori S, Sano K, Momose H, Yamazaki A., Agric. Biol. Chem. 50(11), 1986
PMID: IND86084065
A shuttle vector system for Brevibacterium lactofermentum.
Yeh P, Oreglia J, Prevots F, Sicard AM., Gene 47(2-3), 1986
PMID: 3549456
Cloning vector system for Corynebacterium glutamicum.
Yoshihama M, Higashiro K, Rao EA, Akedo M, Shanabruch WG, Follettie MT, Walker GC, Sinskey AJ., J. Bacteriol. 162(2), 1985
PMID: 3921526
Analysis of the site for second-strand initiation during replication of the Streptomyces plasmid pIJ101.
Zaman S, Radnedge L, Richards H, Ward JM., J. Gen. Microbiol. 139(4), 1993
PMID: 8515227
Molecular analysis and characterization of a broad-host-range plasmid, pEP2.
Zhang Y, Praszkier J, Hodgson A, Pittard AJ., J. Bacteriol. 176(18), 1994
PMID: 7521871
Restriction map of plasmid pXZ10145 of Corynebacterium glutamicum and construction of an integrated plasmid
Zheng, Chin. J. Biotechnol. 3(), 1987
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 12948627
PubMed | Europe PMC

Suchen in

Google Scholar