Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids
Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T (2013)
Journal of Biotechnology 168(4): 739-740.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Rückert, ChristianUniBi ;
Szczepanowski, Rafael;
Albersmeier, AndreasUniBi;
Goesmann, AlexanderUniBi ;
Iftime, Dumitrita;
Musiol, Ewa Maria;
Blin, Kai;
Wohlleben, Wolfgang;
Pühler, AlfredUniBi ;
Kalinowski, JörnUniBi;
Weber, Tilmann
Einrichtung
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Abstract / Bemerkung
Streptomyces collinus Tü 365 (DSMZ 40733), isolated from Kouroussa (Guinea), is the producer of the elfamycin family antibiotic kirromycin, which inhibits bacterial protein biosynthesis by interfering with elongation factor EF-Tu. Here, we report on the Streptomyces collinus Tü 365 complete genome sequence of the 8.27MB chromosome and the two plasmids SCO1 and SCO2.
Erscheinungsjahr
2013
Zeitschriftentitel
Journal of Biotechnology
Band
168
Ausgabe
4
Seite(n)
739-740
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2631956
Zitieren
Rückert C, Szczepanowski R, Albersmeier A, et al. Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology. 2013;168(4):739-740.
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology, 168(4), 739-740. doi:10.1016/j.jbiotec.2013.10.004
Rückert, Christian, Szczepanowski, Rafael, Albersmeier, Andreas, Goesmann, Alexander, Iftime, Dumitrita, Musiol, Ewa Maria, Blin, Kai, et al. 2013. “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”. Journal of Biotechnology 168 (4): 739-740.
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
Rückert, C., et al., 2013. Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology, 168(4), p 739-740.
C. Rückert, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, vol. 168, 2013, pp. 739-740.
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E.M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., Weber, T.: Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology. 168, 739-740 (2013).
Rückert, Christian, Szczepanowski, Rafael, Albersmeier, Andreas, Goesmann, Alexander, Iftime, Dumitrita, Musiol, Ewa Maria, Blin, Kai, Wohlleben, Wolfgang, Pühler, Alfred, Kalinowski, Jörn, and Weber, Tilmann. “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”. Journal of Biotechnology 168.4 (2013): 739-740.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
11 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Gifted microbes for genome mining and natural product discovery.
Baltz RH., J Ind Microbiol Biotechnol 44(4-5), 2017
PMID: 27520548
Baltz RH., J Ind Microbiol Biotechnol 44(4-5), 2017
PMID: 27520548
Wide Distribution of Foxicin Biosynthetic Gene Clusters in Streptomyces Strains - An Unusual Secondary Metabolite with Various Properties.
Greule A, Marolt M, Deubel D, Peintner I, Zhang S, Jessen-Trefzer C, De Ford C, Burschel S, Li SM, Friedrich T, Merfort I, Lüdeke S, Bisel P, Müller M, Paululat T, Bechthold A., Front Microbiol 8(), 2017
PMID: 28270798
Greule A, Marolt M, Deubel D, Peintner I, Zhang S, Jessen-Trefzer C, De Ford C, Burschel S, Li SM, Friedrich T, Merfort I, Lüdeke S, Bisel P, Müller M, Paululat T, Bechthold A., Front Microbiol 8(), 2017
PMID: 28270798
Complete genome sequence of Streptomyces griseochromogenes ATCC 14511T, a producer of nucleoside compounds and diverse secondary metabolites.
Wu L, Chen G, Feng G., J Biotechnol 249(), 2017
PMID: 28342817
Wu L, Chen G, Feng G., J Biotechnol 249(), 2017
PMID: 28342817
Identification and activation of novel biosynthetic gene clusters by genome mining in the kirromycin producer Streptomyces collinus Tü 365.
Iftime D, Kulik A, Härtner T, Rohrer S, Niedermeyer TH, Stegmann E, Weber T, Wohlleben W., J Ind Microbiol Biotechnol 43(2-3), 2016
PMID: 26433383
Iftime D, Kulik A, Härtner T, Rohrer S, Niedermeyer TH, Stegmann E, Weber T, Wohlleben W., J Ind Microbiol Biotechnol 43(2-3), 2016
PMID: 26433383
Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C., J Biotechnol 194(), 2015
PMID: 25499805
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C., J Biotechnol 194(), 2015
PMID: 25499805
Complete genome sequence of Streptomyces lividans TK24.
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J., J Biotechnol 199(), 2015
PMID: 25680930
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J., J Biotechnol 199(), 2015
PMID: 25680930
Streptocollin, a Type IV Lanthipeptide Produced by Streptomyces collinus Tü 365.
Iftime D, Jasyk M, Kulik A, Imhoff JF, Stegmann E, Wohlleben W, Süssmuth RD, Weber T., Chembiochem 16(18), 2015
PMID: 26437689
Iftime D, Jasyk M, Kulik A, Imhoff JF, Stegmann E, Wohlleben W, Süssmuth RD, Weber T., Chembiochem 16(18), 2015
PMID: 26437689
Recently published Streptomyces genome sequences.
Harrison J, Studholme DJ., Microb Biotechnol 7(5), 2014
PMID: 25100265
Harrison J, Studholme DJ., Microb Biotechnol 7(5), 2014
PMID: 25100265
Complete genome sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese.
Walter F, Albersmeier A, Kalinowski J, Rückert C., J Biotechnol 189(), 2014
PMID: 25193709
Walter F, Albersmeier A, Kalinowski J, Rückert C., J Biotechnol 189(), 2014
PMID: 25193709
Complete genome sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer.
Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C., J Biotechnol 189(), 2014
PMID: 25193714
Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C., J Biotechnol 189(), 2014
PMID: 25193714
Complete genome sequence of the actinobacterium Amycolatopsis japonica MG417-CF17(T) (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid.
Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C., J Biotechnol 189(), 2014
PMID: 25193710
Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C., J Biotechnol 189(), 2014
PMID: 25193710
13 References
Daten bereitgestellt von Europe PubMed Central.
antiSMASH 2.0 – a versatile platform for genome mining of secondary metabolite producers
Blin, Nucl. Acids Res. 41(), 2013
Blin, Nucl. Acids Res. 41(), 2013
Viewing and editing assembled sequences using Consed
Gordon, Curr. Protoc. Bioinformatics (), 2003
Gordon, Curr. Protoc. Bioinformatics (), 2003
The kirromycin gene cluster of Streptomyces collinus Tu 365 codes for an aspartate-alpha-decarboxylase, KirD, which is involved in the biosynthesis of the precursor beta-alanine.
Laiple KJ, Hartner T, Fiedler HP, Wohlleben W, Weber T., J. Antibiot. 62(8), 2009
PMID: 19609288
Laiple KJ, Hartner T, Fiedler HP, Wohlleben W, Weber T., J. Antibiot. 62(8), 2009
PMID: 19609288
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
Medema, Nucl. Acids Res. 39(), 2011
Medema, Nucl. Acids Res. 39(), 2011
GenDB – an open source genome annotation tool for prokaryote genomes
Meyer, Nucl. Acids Res. 31(), 2003
Meyer, Nucl. Acids Res. 31(), 2003
Supramolecular templating in kirromycin biosynthesis: the acyltransferase KirCII loads ethylmalonyl-CoA extender onto a specific ACP of the trans-AT PKS.
Musiol EM, Hartner T, Kulik A, Moldenhauer J, Piel J, Wohlleben W, Weber T., Chem. Biol. 18(4), 2011
PMID: 21513880
Musiol EM, Hartner T, Kulik A, Moldenhauer J, Piel J, Wohlleben W, Weber T., Chem. Biol. 18(4), 2011
PMID: 21513880
The AT₂ domain of KirCI loads malonyl extender units to the ACPs of the kirromycin PKS.
Musiol EM, Greule A, Hartner T, Kulik A, Wohlleben W, Weber T., Chembiochem 14(11), 2013
PMID: 23828654
Musiol EM, Greule A, Hartner T, Kulik A, Wohlleben W, Weber T., Chembiochem 14(11), 2013
PMID: 23828654
NCBI, 2010
Elongation factor Tu-targeted antibiotics: four different structures, two mechanisms of action.
Parmeggiani A, Nissen P., FEBS Lett. 580(19), 2006
PMID: 16876786
Parmeggiani A, Nissen P., FEBS Lett. 580(19), 2006
PMID: 16876786
The phosphopantetheinyl transferase KirP activates the ACP and PCP domains of the kirromycin NRPS/PKS of Streptomyces collinus Tu 365.
Pavlidou M, Pross EK, Musiol EM, Kulik A, Wohlleben W, Weber T., FEMS Microbiol. Lett. 319(1), 2011
PMID: 21401713
Pavlidou M, Pross EK, Musiol EM, Kulik A, Wohlleben W, Weber T., FEMS Microbiol. Lett. 319(1), 2011
PMID: 21401713
Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology.
Schwientek P, Szczepanowski R, Ruckert C, Stoye J, Puhler A., J. Biotechnol. 155(1), 2011
PMID: 21536083
Schwientek P, Szczepanowski R, Ruckert C, Stoye J, Puhler A., J. Biotechnol. 155(1), 2011
PMID: 21536083
Molecular analysis of the kirromycin biosynthetic gene cluster revealed beta-alanine as precursor of the pyridone moiety.
Weber T, Laiple KJ, Pross EK, Textor A, Grond S, Welzel K, Pelzer S, Vente A, Wohlleben W., Chem. Biol. 15(2), 2008
PMID: 18291322
Weber T, Laiple KJ, Pross EK, Textor A, Grond S, Welzel K, Pelzer S, Vente A, Wohlleben W., Chem. Biol. 15(2), 2008
PMID: 18291322
[Metabolic products of microorganisms. 99. Kirromycin].
Wolf H, Zahner H., Arch Mikrobiol 83(2), 1972
PMID: 4554808
Wolf H, Zahner H., Arch Mikrobiol 83(2), 1972
PMID: 4554808
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 24140291
PubMed | Europe PMC
Suchen in