Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases
Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)
PHYTOCHEMISTRY 136: 15-22.
Zeitschriftenaufsatz
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Autor*in
Kracht, Octavia Natascha;
Ammann, Ann-Christin;
Stockmann, Julia;
Wibberg, DanielUniBi;
Kalinowski, JörnUniBi;
Piotrowski, Markus;
Kerr, Russell;
Brueck, Thomas;
Kourist, Robert
Einrichtung
Abstract / Bemerkung
Plant terpenoids are a large and highly diverse class of metabolites with an important role in the immune defense. They find wide industrial application as active pharmaceutical ingredients, aroma and fragrance compounds. Several Eremophila sp. derived terpenoids have been documented. To elucidate the terpenoid metabolism, the transcriptome of juvenile and mature Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) leaves was sequenced and a transcript library was generated. We report on the first transcriptomic dataset of an Eremophila plant. IlluminaMiSeq sequencing (2 x 300 bp) revealed 7,093,266 paired reads, which could be assembled to 34,505 isogroups. To enable detection of terpene biosynthetic genes, leaves were separately treated with methyl jasmonate, a well-documented inducer of plant secondary metabolites. In total, 21 putative terpene synthase genes were detected in the transcriptome data. Two terpene synthase isoenzymatic genes, termed ES01 and ES02, were successfully expressed in E. coli. The resulting proteins catalyzed the conversion of geranyl pyrophosphate, the universal substrate of monoterpene synthases to myrcene and Z-(b)-ocimene, respectively. The transcriptomic data and the discovery of the first terpene synthases from Eremophila serrulata are the initial step for the understanding of the terpene metabolism in this medicinally important plant genus. (C) 2017 Elsevier Ltd. All rights reserved.
Stichworte
Eremophila serrulata (A.DC.) Druce;
Scrophulariaceae;
Terpene synthase;
Ocimene synthase;
Myrcene synthase;
Isoenzymes;
Geranyl pyrophosphate
Erscheinungsjahr
2017
Zeitschriftentitel
PHYTOCHEMISTRY
Band
136
Seite(n)
15-22
ISSN
0031-9422
Page URI
https://pub.uni-bielefeld.de/record/2911017
Zitieren
Kracht ON, Ammann A-C, Stockmann J, et al. Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY. 2017;136:15-22.
Kracht, O. N., Ammann, A. - C., Stockmann, J., Wibberg, D., Kalinowski, J., Piotrowski, M., Kerr, R., et al. (2017). Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY, 136, 15-22. doi:10.1016/j.phytochem.2017.01.016
Kracht, Octavia Natascha, Ammann, Ann-Christin, Stockmann, Julia, Wibberg, Daniel, Kalinowski, Jörn, Piotrowski, Markus, Kerr, Russell, Brueck, Thomas, and Kourist, Robert. 2017. “Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases”. PHYTOCHEMISTRY 136: 15-22.
Kracht, O. N., Ammann, A. - C., Stockmann, J., Wibberg, D., Kalinowski, J., Piotrowski, M., Kerr, R., Brueck, T., and Kourist, R. (2017). Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY 136, 15-22.
Kracht, O.N., et al., 2017. Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY, 136, p 15-22.
O.N. Kracht, et al., “Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases”, PHYTOCHEMISTRY, vol. 136, 2017, pp. 15-22.
Kracht, O.N., Ammann, A.-C., Stockmann, J., Wibberg, D., Kalinowski, J., Piotrowski, M., Kerr, R., Brueck, T., Kourist, R.: Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases. PHYTOCHEMISTRY. 136, 15-22 (2017).
Kracht, Octavia Natascha, Ammann, Ann-Christin, Stockmann, Julia, Wibberg, Daniel, Kalinowski, Jörn, Piotrowski, Markus, Kerr, Russell, Brueck, Thomas, and Kourist, Robert. “Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases”. PHYTOCHEMISTRY 136 (2017): 15-22.
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Daten bereitgestellt von Europe PubMed Central.
31 References
Daten bereitgestellt von Europe PubMed Central.
Herbivore-induced defense response in a model legume. Two-spotted spider mites induce emission of (E)-beta-ocimene and transcript accumulation of (E)-beta-ocimene synthase in Lotus japonicus.
Arimura G, Ozawa R, Kugimiya S, Takabayashi J, Bohlmann J., Plant Physiol. 135(4), 2004
PMID: 15310830
Arimura G, Ozawa R, Kugimiya S, Takabayashi J, Bohlmann J., Plant Physiol. 135(4), 2004
PMID: 15310830
Antibacterial serrulatane diterpenes from the Australian native plant Eremophila microtheca.
Barnes EC, Kavanagh AM, Ramu S, Blaskovich MA, Cooper MA, Davis RA., Phytochemistry 93(), 2013
PMID: 23602054
Barnes EC, Kavanagh AM, Ramu S, Blaskovich MA, Cooper MA, Davis RA., Phytochemistry 93(), 2013
PMID: 23602054
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
Becker, J. Biotechnol. 156(), 2011
Becker, J. Biotechnol. 156(), 2011
The Sequence Analysis and Management System – SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies
Bekel, J. Biotechnol. 140(), 2009
Bekel, J. Biotechnol. 140(), 2009
Plant terpenoid synthases: molecular biology and phylogenetic analysis.
Bohlmann J, Meyer-Gauen G, Croteau R., Proc. Natl. Acad. Sci. U.S.A. 95(8), 1998
PMID: 9539701
Bohlmann J, Meyer-Gauen G, Croteau R., Proc. Natl. Acad. Sci. U.S.A. 95(8), 1998
PMID: 9539701
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bolger AM, Lohse M, Usadel B., Bioinformatics 30(15), 2014
PMID: 24695404
Bolger AM, Lohse M, Usadel B., Bioinformatics 30(15), 2014
PMID: 24695404
Purification and kinetic properties of elisabethatriene synthase from the coral Pseudopterogorgia elisabethae.
Bruck TB, Kerr RG., Comp. Biochem. Physiol. B, Biochem. Mol. Biol. 143(3), 2006
PMID: 16423548
Bruck TB, Kerr RG., Comp. Biochem. Physiol. B, Biochem. Mol. Biol. 143(3), 2006
PMID: 16423548
Chinnock, 2007
Evidence for differential folding of farnesyl pyrophosphate in the active site of aristolochene synthase: a single-point mutation converts aristolochene synthase into an (E)-beta-farnesene synthase.
Deligeorgopoulou A, Allemann RK., Biochemistry 42(25), 2003
PMID: 12820883
Deligeorgopoulou A, Allemann RK., Biochemistry 42(25), 2003
PMID: 12820883
(E)-beta-ocimene and myrcene synthase genes of floral scent biosynthesis in Snapdragon: function and expression of three terpene synthase genes of a new terpene synthase subfamily
Dudareva, Plant Cell onl 15(), 2003
Dudareva, Plant Cell onl 15(), 2003
The ethnopharmacology and phytochemistry of Eremophila species (Myoporaceae)
Ghisalberti, J. Ethnopharm 44(), 1994
Ghisalberti, J. Ethnopharm 44(), 1994
Building phylogenetic trees from molecular data with MEGA
Hall, Mol. Bio. Evol. 30(), 2013
Hall, Mol. Bio. Evol. 30(), 2013
One amino acid makes the difference: the formation of ent-kaurene and 16α-hydroxy-ent-kaurane by diterpene synthases in poplar.
Irmisch S, Muller AT, Schmidt L, Gunther J, Gershenzon J, Kollner TG., BMC Plant Biol. 15(), 2015
PMID: 26511849
Irmisch S, Muller AT, Schmidt L, Gunther J, Gershenzon J, Kollner TG., BMC Plant Biol. 15(), 2015
PMID: 26511849
Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets
Kumar, Mol. Bio. Evol. (), 2015
Kumar, Mol. Bio. Evol. (), 2015
Strategies for transgenic manipulation of monoterpene biosynthesis in plants.
Mahmoud SS, Croteau RB., Trends Plant Sci. 7(8), 2002
PMID: 12167332
Mahmoud SS, Croteau RB., Trends Plant Sci. 7(8), 2002
PMID: 12167332
The Ca(2+) -dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis.
Mehlmer N, Wurzinger B, Stael S, Hofmann-Rodrigues D, Csaszar E, Pfister B, Bayer R, Teige M., Plant J. 63(3), 2010
PMID: 20497378
Mehlmer N, Wurzinger B, Stael S, Hofmann-Rodrigues D, Csaszar E, Pfister B, Bayer R, Teige M., Plant J. 63(3), 2010
PMID: 20497378
Insect-induced gene expression at the core of volatile terpene release in Medicago truncatula.
Navia-Gine WG, Gomez SK, Yuan J, Chen F, Korth KL., Plant Signal Behav 4(7), 2009
PMID: 19820332
Navia-Gine WG, Gomez SK, Yuan J, Chen F, Korth KL., Plant Signal Behav 4(7), 2009
PMID: 19820332
Antimicrobial compounds from Eremophila serrulata.
Ndi CP, Semple SJ, Griesser HJ, Pyke SM, Barton MD., Phytochemistry 68(21), 2007
PMID: 17631925
Ndi CP, Semple SJ, Griesser HJ, Pyke SM, Barton MD., Phytochemistry 68(21), 2007
PMID: 17631925
Terpene biosynthesis: modularity rules.
Oldfield E, Lin FY., Angew. Chem. Int. Ed. Engl. 51(5), 2011
PMID: 22105807
Oldfield E, Lin FY., Angew. Chem. Int. Ed. Engl. 51(5), 2011
PMID: 22105807
Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.
Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Puhler A, Noll T, Goesmann A., PLoS ONE 9(1), 2014
PMID: 24427317
Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Puhler A, Noll T, Goesmann A., PLoS ONE 9(1), 2014
PMID: 24427317
Cytogeography of essential oil chemotypes of Eremophila longifolia F. Muell (Scrophulariaceae).
Sadgrove NJ, Jones GL., Phytochemistry 105(), 2014
PMID: 24874947
Sadgrove NJ, Jones GL., Phytochemistry 105(), 2014
PMID: 24874947
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF., Appl. Environ. Microbiol. 75(23), 2009
PMID: 19801464
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF., Appl. Environ. Microbiol. 75(23), 2009
PMID: 19801464
Intraspecific variation in essential oil composition of Eremophila longifolia F. Muell. (Myoporaceae): evidence for three chemotypes.
Smith J, Tucker D, Alter D, Watson K, Jones G., Phytochemistry 71(13), 2010
PMID: 20605032
Smith J, Tucker D, Alter D, Watson K, Jones G., Phytochemistry 71(13), 2010
PMID: 20605032
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
Tamura, Mol. Biol. Evol. (), 1993
Tamura, Mol. Biol. Evol. (), 1993
Endophytic Streptomyces in the traditional medicinal plant Arnica montana L.: secondary metabolites and biological activity
Wardecki, Ant. Van Leeuwenhoek 108(), 2015
Wardecki, Ant. Van Leeuwenhoek 108(), 2015
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters.
Weber T, Blin K, Duddela S, Krug D, Kim HU, Bruccoleri R, Lee SY, Fischbach MA, Muller R, Wohlleben W, Breitling R, Takano E, Medema MH., Nucleic Acids Res. 43(W1), 2015
PMID: 25948579
Weber T, Blin K, Duddela S, Krug D, Kim HU, Bruccoleri R, Lee SY, Fischbach MA, Muller R, Wohlleben W, Breitling R, Takano E, Medema MH., Nucleic Acids Res. 43(W1), 2015
PMID: 25948579
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).
Wibberg D, Jelonek L, Rupp O, Krober M, Goesmann A, Grosch R, Puhler A, Schluter A., Fungal Biol 118(9-10), 2014
PMID: 25209639
Wibberg D, Jelonek L, Rupp O, Krober M, Goesmann A, Grosch R, Puhler A, Schluter A., Fungal Biol 118(9-10), 2014
PMID: 25209639
Novel terpenes generated by heterologous expression of bacterial terpene synthase genes in an engineered Streptomyces host
Yamada, J. Antibiot. 68(), 2015
Yamada, J. Antibiot. 68(), 2015
Volatile oils from the aerial parts of Eremophila maculata and their antimicrobial activity.
Youssef FS, Hamoud R, Ashour ML, Singab AN, Wink M., Chem. Biodivers. 11(5), 2014
PMID: 24827695
Youssef FS, Hamoud R, Ashour ML, Singab AN, Wink M., Chem. Biodivers. 11(5), 2014
PMID: 24827695
Gene discovery of modular diterpene metabolism in nonmodel systems.
Zerbe P, Hamberger B, Yuen MM, Chiang A, Sandhu HK, Madilao LL, Nguyen A, Hamberger B, Bach SS, Bohlmann J., Plant Physiol. 162(2), 2013
PMID: 23613273
Zerbe P, Hamberger B, Yuen MM, Chiang A, Sandhu HK, Madilao LL, Nguyen A, Hamberger B, Bach SS, Bohlmann J., Plant Physiol. 162(2), 2013
PMID: 23613273
SPME Applied to the study of volatile organic compounds emitted by three species of Eucalyptus in situ
Zini, J. Agric. Food Chem. 50(), 2002
Zini, J. Agric. Food Chem. 50(), 2002
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