Complete genome sequence of the myxobacterium Sorangium cellulosum

Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, et al. (2007)
Nature Biotechnology 25(11): 1281-1289.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Schneiker-Bekel, SusanneUniBi; Perlova, Olena; Kaiser, Olaf; Gerth, Klaus; Alici, Aysel; Altmeyer, Matthias O.; Bartels, Daniela; Bekel, ThomasUniBi; Beyer, Stefan; Bode, Edna; Bode, Helge B.; Bolten, Christoph J.
Alle
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Fakultät für Biologie
Abstract / Bemerkung
The genus Sorangium synthesizes approximately half of the secondary metabolites isolated from myxobacteria, including the anti-cancer metabolite epothilone. We report the complete genome sequence of the model Sorangium strain S. cellulosum So ce56, which produces several natural products and has morphological and physiological properties typical of the genus. The circular genome, comprising 13,033,779 base pairs, is the largest bacterial genome sequenced to date. No global synteny with the genome of Myxococcus xanthus is apparent, revealing an unanticipated level of divergence between these myxobacteria. A large percentage of the genome is devoted to regulation, particularly post-translational phosphorylation, which probably supports the strain's complex, social lifestyle. This regulatory network includes the highest number of eukaryotic protein kinase-like kinases discovered in any organism. Seventeen secondary metabolite loci are encoded in the genome, as well as many enzymes with potential utility in industry.
Erscheinungsjahr
2007
Zeitschriftentitel
Nature Biotechnology
Band
25
Ausgabe
11
Seite(n)
1281-1289
ISSN
1087-0156
Page URI
https://pub.uni-bielefeld.de/record/1631327

Zitieren

Schneiker-Bekel S, Perlova O, Kaiser O, et al. Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology. 2007;25(11):1281-1289.
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. https://doi.org/10.1038/nbt1354
Schneiker-Bekel, Susanne, Perlova, Olena, Kaiser, Olaf, Gerth, Klaus, Alici, Aysel, Altmeyer, Matthias O., Bartels, Daniela, et al. 2007. “Complete genome sequence of the myxobacterium Sorangium cellulosum”. Nature Biotechnology 25 (11): 1281-1289.
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
Schneiker-Bekel, S., et al., 2007. Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), p 1281-1289.
S. Schneiker-Bekel, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, vol. 25, 2007, pp. 1281-1289.
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M.O., Bartels, D., Bekel, T., Beyer, S., Bode, E., Bode, H.B., Bolten, C.J., Choudhuri, J.V., Doss, S., Elnakady, Y.A., Frank, B., Gaigalat, L., Goesmann, A., Groeger, C., Gross, F., Jelsbak, L., Jelsbak, L., Kalinowski, J., Kegler, C., Knauber, T., Konietzny, S., Kopp, M., Krause, L., Krug, D., Linke, B., Mahmud, T., Martinez-Arias, R., McHardy, A.C., Merai, M., Meyer, F., Mormann, S., Munoz-Dorado, J., Perez, J., Pradella, S., Rachid, S., Raddatz, G., Rosenau, F., Rückert, C., Sasse, F., Scharfe, M., Schuster, S.C., Suen, G., Treuner-Lange, A., Velicer, G.J., Vorhölter, F.-J., Weissman, K.J., Welch, R.D., Wenzel, S.C., Whitworth, D.E., Wilhelm, S., Wittmann, C., Bloecker, H., Pühler, A., Mueller, R.: Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology. 25, 1281-1289 (2007).
Schneiker-Bekel, Susanne, Perlova, Olena, Kaiser, Olaf, Gerth, Klaus, Alici, Aysel, Altmeyer, Matthias O., Bartels, Daniela, Bekel, Thomas, Beyer, Stefan, Bode, Edna, Bode, Helge B., Bolten, Christoph J., Choudhuri, Jomuna V., Doss, Sabrina, Elnakady, Yasser A., Frank, Bettina, Gaigalat, Lars, Goesmann, Alexander, Groeger, Carolin, Gross, Frank, Jelsbak, Lars, Jelsbak, Lotte, Kalinowski, Jörn, Kegler, Carsten, Knauber, Tina, Konietzny, Sebastian, Kopp, Maren, Krause, Lutz, Krug, Daniel, Linke, Burkhard, Mahmud, Taifo, Martinez-Arias, Rosa, McHardy, Alice C., Merai, Michelle, Meyer, Folker, Mormann, Sascha, Munoz-Dorado, Jose, Perez, Juana, Pradella, Silke, Rachid, Shwan, Raddatz, Guenter, Rosenau, Frank, Rückert, Christian, Sasse, Florenz, Scharfe, Maren, Schuster, Stephan C., Suen, Garret, Treuner-Lange, Anke, Velicer, Gregory J., Vorhölter, Frank-Jörg, Weissman, Kira J., Welch, Roy D., Wenzel, Silke C., Whitworth, David E., Wilhelm, Susanne, Wittmann, Christoph, Bloecker, Helmut, Pühler, Alfred, and Mueller, Rolf. “Complete genome sequence of the myxobacterium Sorangium cellulosum”. Nature Biotechnology 25.11 (2007): 1281-1289.

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Klenk JM, Dubiel P, Sharma M, Grogan G, Hauer B., Microb Biotechnol 12(2), 2019
PMID: 30592153
A Highly Polymorphic Receptor Governs Many Distinct Self-Recognition Types within the Myxococcales Order.
Cao P, Wei X, Awal RP, Müller R, Wall D., MBio 10(1), 2019
PMID: 30755513
Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals.
Bohlin J, Pettersson JH., Comput Struct Biotechnol J 17(), 2019
PMID: 30949307
Omics Studies Revealed the Factors Involved in the Formation of Colony Boundary in Myxococcus xanthus.
Anwar MN, Li ZF, Gong Y, Singh RP, Li YZ., Cells 8(6), 2019
PMID: 31163575
A Genomotaxonomy View of the Bradyrhizobium Genus.
Ormeño-Orrillo E, Martínez-Romero E., Front Microbiol 10(), 2019
PMID: 31263459
Increasing flooding frequency alters soil microbial communities and functions under laboratory conditions.
Randle-Boggis RJ, Ashton PD, Helgason T., Microbiologyopen 7(1), 2018
PMID: 29115058
Comparative Genomics of Myxobacterial Chemosensory Systems.
Sharma G, Khatri I, Subramanian S., J Bacteriol 200(3), 2018
PMID: 29158239
Bacterial Enzymes Catalyzing the Synthesis of 1,8-Dihydroxynaphthalene, a Key Precursor of Dihydroxynaphthalene Melanin, from Sorangium cellulosum.
Sone Y, Nakamura S, Sasaki M, Hasebe F, Kim SY, Funa N., Appl Environ Microbiol 84(9), 2018
PMID: 29500263
Self-resistance guided genome mining uncovers new topoisomerase inhibitors from myxobacteria.
Panter F, Krug D, Baumann S, Müller R., Chem Sci 9(21), 2018
PMID: 29910943
Antiviral Compounds from Myxobacteria.
Mulwa LS, Stadler M., Microorganisms 6(3), 2018
PMID: 30029487
Diversity and Evolution of Myxobacterial Type IV Pilus Systems.
Sharma G, Burrows LL, Singer M., Front Microbiol 9(), 2018
PMID: 30072980
Diversity of Myxobacteria-We Only See the Tip of the Iceberg.
Mohr KI., Microorganisms 6(3), 2018
PMID: 30103481
Structural insights into oxidation of medium-chain fatty acids and flavanone by myxobacterial cytochrome P450 CYP267B1.
Jóźwik IK, Litzenburger M, Khatri Y, Schifrin A, Girhard M, Urlacher V, Thunnissen AWH, Bernhardt R., Biochem J 475(17), 2018
PMID: 30045877
A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.
Mohr KI, Wolf C, Nübel U, Szafrańska AK, Steglich M, Hennessen F, Gemperlein K, Kämpfer P, Martin K, Müller R, Wink J., Int J Syst Evol Microbiol 68(11), 2018
PMID: 30234476
In silico characterization of a novel putative aerotaxis chemosensory system in the myxobacterium, Corallococcus coralloides.
Sharma G, Parales R, Singer M., BMC Genomics 19(1), 2018
PMID: 30340510
Gifted microbes for genome mining and natural product discovery.
Baltz RH., J Ind Microbiol Biotechnol 44(4-5), 2017
PMID: 27520548
Assessment of the bimodality in the distribution of bacterial genome sizes.
Gweon HS, Bailey MJ, Read DS., ISME J 11(3), 2017
PMID: 27834945
Total Synthesis of Leupyrrins A1 and B1 , Highly Potent Antifungal Agents from the Myxobacterium Sorangium cellulosum.
Thiede S, Wosniok PR, Herkommer D, Debnar T, Tian M, Wang T, Schrempp M, Menche D., Chemistry 23(14), 2017
PMID: 27906488
Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases.
Sharma G, Subramanian S., Genome Biol Evol 9(5), 2017
PMID: 28379546
Kinetics of DNA elongation.
Bykov VI, Lukovenkov AV, Varfolomeev SD., Dokl Biochem Biophys 474(1), 2017
PMID: 28726097
LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis.
Barbosa E, Röttger R, Hauschild AC, de Castro Soares S, Böcker S, Azevedo V, Baumbach J., J Integr Bioinform 14(2), 2017
PMID: 28678736
Comparative genomic analysis of Paenibacillus sp. SSG-1 and its closely related strains reveals the effect of glycometabolism on environmental adaptation.
Xu H, Qin S, Lan Y, Liu M, Cao X, Qiao D, Cao Y, Cao Y., Sci Rep 7(1), 2017
PMID: 28720902
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE., Genome Biol 18(1), 2017
PMID: 28934964
Complete Genome Sequence of the Fruiting Myxobacterium Myxococcus macrosporus Strain DSM 14697, Generated by PacBio Sequencing.
Treuner-Lange A, Bruckskotten M, Rupp O, Goesmann A, Søgaard-Andersen L., Genome Announc 5(40), 2017
PMID: 28983009
Whole-Genome Sequence of the Fruiting Myxobacterium Cystobacter fuscus DSM 52655.
Treuner-Lange A, Bruckskotten M, Rupp O, Goesmann A, Søgaard-Andersen L., Genome Announc 5(43), 2017
PMID: 29074667
Draft Genome Sequence of the Fruiting Myxobacterium Nannocystis exedens DSM 71.
Treuner-Lange A, Bruckskotten M, Rupp O, Goesmann A, Søgaard-Andersen L., Genome Announc 5(43), 2017
PMID: 29074673
Complete Genome Sequence of the Fruiting Myxobacterium Melittangium boletus DSM 14713.
Treuner-Lange A, Bruckskotten M, Rupp O, Goesmann A, Søgaard-Andersen L., Genome Announc 5(45), 2017
PMID: 29122879
Coevolution of the Organization and Structure of Prokaryotic Genomes.
Touchon M, Rocha EP., Cold Spring Harb Perspect Biol 8(1), 2016
PMID: 26729648
The complete genome sequence and analysis of a plasmid-bearing myxobacterial strain Myxococcus fulvus 124B02 (M 206081).
Chen XJ, Han K, Feng J, Zhuo L, Li YJ, Li YZ., Stand Genomic Sci 11(), 2016
PMID: 26734118
Selective oxidation of carotenoid-derived aroma compounds by CYP260B1 and CYP267B1 from Sorangium cellulosum So ce56.
Litzenburger M, Bernhardt R., Appl Microbiol Biotechnol 100(10), 2016
PMID: 26767988
Genome Analysis of the Fruiting Body-Forming Myxobacterium Chondromyces crocatus Reveals High Potential for Natural Product Biosynthesis.
Zaburannyi N, Bunk B, Maier J, Overmann J, Müller R., Appl Environ Microbiol 82(6), 2016
PMID: 26773087
Discovery of cahuitamycins as biofilm inhibitors derived from a convergent biosynthetic pathway.
Park SR, Tripathi A, Wu J, Schultz PJ, Yim I, McQuade TJ, Yu F, Arevang CJ, Mensah AY, Tamayo-Castillo G, Xi C, Sherman DH., Nat Commun 7(), 2016
PMID: 26880271
Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus.
Sharma G, Narwani T, Subramanian S., PLoS One 11(2), 2016
PMID: 26900859
A single terpene synthase is responsible for a wide variety of sesquiterpenes in Sorangium cellulosum Soce56.
Schifrin A, Khatri Y, Kirsch P, Thiel V, Schulz S, Bernhardt R., Org Biomol Chem 14(13), 2016
PMID: 26947062
Cellulose-Enriched Microbial Communities from Leaf-Cutter Ant (Atta colombica) Refuse Dumps Vary in Taxonomic Composition and Degradation Ability.
Lewin GR, Johnson AL, Soto RD, Perry K, Book AJ, Horn HA, Pinto-Tomás AA, Currie CR., PLoS One 11(3), 2016
PMID: 26999749
Antibiotics from predatory bacteria.
Korp J, Vela Gurovic MS, Nett M., Beilstein J Org Chem 12(), 2016
PMID: 27340451
Myxobacteria: Moving, Killing, Feeding, and Surviving Together.
Muñoz-Dorado J, Marcos-Torres FJ, García-Bravo E, Moraleda-Muñoz A, Pérez J., Front Microbiol 7(), 2016
PMID: 27303375
Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community.
Thies S, Rausch SC, Kovacic F, Schmidt-Thaler A, Wilhelm S, Rosenau F, Daniel R, Streit W, Pietruszka J, Jaeger KE., Sci Rep 6(), 2016
PMID: 27271534
Characterization of Pajaroellobacter abortibovis, the etiologic agent of epizootic bovine abortion.
Brooks RS, Blanchard MT, Clothier KA, Fish S, Anderson ML, Stott JL., Vet Microbiol 192(), 2016
PMID: 27527767
Molecular Mechanisms of Signaling in Myxococcus xanthus Development.
Bretl DJ, Kirby JR., J Mol Biol 428(19), 2016
PMID: 27430596
Process performance and bacterial community dynamics of partial-nitritation biofilters subjected to different concentrations of cysteine amino acid.
Rodriguez-Sanchez A, Munoz-Palazon B, Maza-Marquez P, Gonzalez-Lopez J, Vahala R, Gonzalez-Martinez A., Biotechnol Prog 32(5), 2016
PMID: 27453498
Planctomycetes as Novel Source of Bioactive Molecules.
Graça AP, Calisto R, Lage OM., Front Microbiol 7(), 2016
PMID: 27570520
Scrutiny of electrochemically-driven electrocatalysis of C-19 steroid 1α-hydroxylase (CYP260A1) from Sorangium cellulosum So ce56.
Kuzikov AV, Masamrekh RA, Khatri Y, Zavialova MG, Bernhardt R, Archakov AI, Shumyantseva VV., Anal Biochem 513(), 2016
PMID: 27567992
Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T.
Sharma G, Khatri I, Subramanian S., Genome Biol Evol 8(8), 2016
PMID: 27358428
Degradation of cyclic diguanosine monophosphate by a hybrid two-component protein protects Azoarcus sp. strain CIB from toluene toxicity.
Martín-Moldes Z, Blázquez B, Baraquet C, Harwood CS, Zamarro MT, Díaz E., Proc Natl Acad Sci U S A 113(46), 2016
PMID: 27799551
Macrolactam analogues of macrolide natural products.
Hügel HM, Smith AT, Rizzacasa MA., Org Biomol Chem 14(48), 2016
PMID: 27812587
Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics.
Zhang X, Liu X, He Q, Dong W, Zhang X, Fan F, Peng D, Huang W, Yin H., Front Microbiol 7(), 2016
PMID: 27999570
Characterization of the gene cluster CYP264B1-geoA from Sorangium cellulosum So ce56: biosynthesis of (+)-eremophilene and its hydroxylation.
Schifrin A, Ly TT, Günnewich N, Zapp J, Thiel V, Schulz S, Hannemann F, Khatri Y, Bernhardt R., Chembiochem 16(2), 2015
PMID: 25504914
Nitrite reduction by molybdoenzymes: a new class of nitric oxide-forming nitrite reductases.
Maia LB, Moura JJ., J Biol Inorg Chem 20(2), 2015
PMID: 25589250
On the evolution of bacterial multicellularity.
Lyons NA, Kolter R., Curr Opin Microbiol 24(), 2015
PMID: 25597443
30S Subunit-dependent activation of the Sorangium cellulosum So ce56 aminoglycoside resistance-conferring 16S rRNA methyltransferase Kmr.
Savic M, Sunita S, Zelinskaya N, Desai PM, Macmaster R, Vinal K, Conn GL., Antimicrob Agents Chemother 59(5), 2015
PMID: 25733511
The cognitive cell: bacterial behavior reconsidered.
Lyon P., Front Microbiol 6(), 2015
PMID: 25926819
Multiple nucleophilic elbows leading to multiple active sites in a single module esterase from Sorangium cellulosum.
Udatha DB, Madsen KM, Panagiotou G, Olsson L., J Struct Biol 190(3), 2015
PMID: 25907516
Multiple chaperonins in bacteria--novel functions and non-canonical behaviors.
Kumar CM, Mande SC, Mahajan G., Cell Stress Chaperones 20(4), 2015
PMID: 25986150
Characterization of 3'-Phosphate RNA Ligase Paralogs RtcB1, RtcB2, and RtcB3 from Myxococcus xanthus Highlights DNA and RNA 5'-Phosphate Capping Activity of RtcB3.
Maughan WP, Shuman S., J Bacteriol 197(22), 2015
PMID: 26350128
Highly Efficient CYP167A1 (EpoK) dependent Epothilone B Formation and Production of 7-Ketone Epothilone D as a New Epothilone Derivative.
Kern F, Dier TK, Khatri Y, Ewen KM, Jacquot JP, Volmer DA, Bernhardt R., Sci Rep 5(), 2015
PMID: 26445909
Genome-wide analysis of myxobacterial two-component systems: genome relatedness and evolutionary changes.
Whitworth DE., BMC Genomics 16(), 2015
PMID: 26463047
Lignin-modifying processes in the rhizosphere of arid land grasses.
Hudson CM, Kirton E, Hutchinson MI, Redfern JL, Simmons B, Ackerman E, Singh S, Williams KP, Natvig DO, Powell AJ., Environ Microbiol 17(12), 2015
PMID: 26279186
Interactions in the microbiome: communities of organisms and communities of genes.
Boon E, Meehan CJ, Whidden C, Wong DH, Langille MG, Beiko RG., FEMS Microbiol Rev 38(1), 2014
PMID: 23909933
Future potential for anti-infectives from bacteria - how to exploit biodiversity and genomic potential.
Müller R, Wink J., Int J Med Microbiol 304(1), 2014
PMID: 24119567
Activating the expression of bacterial cryptic genes by rpoB mutations in RNA polymerase or by rare earth elements.
Ochi K, Tanaka Y, Tojo S., J Ind Microbiol Biotechnol 41(2), 2014
PMID: 24127067
Bioinformatics tools for genome mining of polyketide and non-ribosomal peptides.
Boddy CN., J Ind Microbiol Biotechnol 41(2), 2014
PMID: 24174214
Diversity of epothilone producers among Sorangium strains in producer-positive soil habitats.
Li SG, Zhao L, Han K, Li PF, Li ZF, Hu W, Liu H, Wu ZH, Li YZ., Microb Biotechnol 7(2), 2014
PMID: 24308800
A recent evolutionary origin of a bacterial small RNA that controls multicellular fruiting body development.
Chen IC, Griesenauer B, Yu YT, Velicer GJ., Mol Phylogenet Evol 73(), 2014
PMID: 24418530
An environmental bacterial taxon with a large and distinct metabolic repertoire.
Wilson MC, Mori T, Rückert C, Uria AR, Helf MJ, Takada K, Gernert C, Steffens UA, Heycke N, Schmitt S, Rinke C, Helfrich EJ, Brachmann AO, Gurgui C, Wakimoto T, Kracht M, Crüsemann M, Hentschel U, Abe I, Matsunaga S, Kalinowski J, Takeyama H, Piel J., Nature 506(7486), 2014
PMID: 24476823
Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival.
Christiansen MT, Kaas RS, Chaudhuri RR, Holmes MA, Hasman H, Aarestrup FM., PLoS One 9(2), 2014
PMID: 24563689
Strong genome-wide selection early in the evolution of Prochlorococcus resulted in a reduced genome through the loss of a large number of small effect genes.
Sun Z, Blanchard JL., PLoS One 9(3), 2014
PMID: 24594762
Nitric oxide: an effective weapon of the plant or the pathogen?
Arasimowicz-Jelonek M, Floryszak-Wieczorek J., Mol Plant Pathol 15(4), 2014
PMID: 24822271
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.
Cimermancic P, Medema MH, Claesen J, Kurita K, Wieland Brown LC, Mavrommatis K, Pati A, Godfrey PA, Koehrsen M, Clardy J, Birren BW, Takano E, Sali A, Linington RG, Fischbach MA., Cell 158(2), 2014
PMID: 25036635
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm.
Wu YW, Tang YH, Tringe SG, Simmons BA, Singer SW., Microbiome 2(), 2014
PMID: 25136443
A highly unusual polyketide synthase directs dawenol polyene biosynthesis in Stigmatella aurantiaca.
Oßwald C, Zaburannyi N, Burgard C, Hoffmann T, Wenzel SC, Müller R., J Biotechnol 191(), 2014
PMID: 25102237
Antimalarial activity of the myxobacterial macrolide chlorotonil a.
Held J, Gebru T, Kalesse M, Jansen R, Gerth K, Müller R, Mordmüller B., Antimicrob Agents Chemother 58(11), 2014
PMID: 25114138
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes.
Puigbò P, Lobkovsky AE, Kristensen DM, Wolf YI, Koonin EV., BMC Biol 12(), 2014
PMID: 25141959
A conserved proline triplet in Val-tRNA synthetase and the origin of elongation factor P.
Starosta AL, Lassak J, Peil L, Atkinson GC, Woolstenhulme CJ, Virumäe K, Buskirk A, Tenson T, Remme J, Jung K, Wilson DN., Cell Rep 9(2), 2014
PMID: 25310979
Management of multipartite genomes: the Vibrio cholerae model.
Val ME, Soler-Bistué A, Bland MJ, Mazel D., Curr Opin Microbiol 22(), 2014
PMID: 25460805
Genome reduction promotes increase in protein functional complexity in bacteria.
Kelkar YD, Ochman H., Genetics 193(1), 2013
PMID: 23114380
New strategies for drug discovery: activation of silent or weakly expressed microbial gene clusters.
Ochi K, Hosaka T., Appl Microbiol Biotechnol 97(1), 2013
PMID: 23143535
Identification of the Treponema pallidum subsp. pallidum TP0092 (RpoE) regulon and its implications for pathogen persistence in the host and syphilis pathogenesis.
Giacani L, Denisenko O, Tompa M, Centurion-Lara A., J Bacteriol 195(4), 2013
PMID: 23243302
Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu.
Han K, Li ZF, Peng R, Zhu LP, Zhou T, Wang LG, Li SG, Zhang XB, Hu W, Wu ZH, Qin N, Li YZ., Sci Rep 3(), 2013
PMID: 23812535
Natural selection for operons depends on genome size.
Nuñez PA, Romero H, Farber MD, Rocha EP., Genome Biol Evol 5(11), 2013
PMID: 24201372
Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems.
Auffret M, Yergeau É, Pilote A, Proulx É, Proulx D, Greer CW, Vandenberg G, Villemur R., FEMS Microbiol Ecol 84(2), 2013
PMID: 23228051
Complete genome sequence of a newcastle disease virus strain belonging to a recently identified genotype.
Briand FX, Henry A, Brown P, Massin P, Jestin V., Genome Announc 1(1), 2013
PMID: 23405340
Complete genome sequence of Myxococcus stipitatus strain DSM 14675, a fruiting myxobacterium.
Huntley S, Kneip S, Treuner-Lange A, Søgaard-Andersen L., Genome Announc 1(2), 2013
PMID: 23516218
A Markovian analysis of bacterial genome sequence constraints.
Skewes AD, Welch RD., PeerJ 1(), 2013
PMID: 24010012
The condition-dependent transcriptional landscape of Burkholderia pseudomallei.
Ooi WF, Ong C, Nandi T, Kreisberg JF, Chua HH, Sun G, Chen Y, Mueller C, Conejero L, Eshaghi M, Ang RM, Liu J, Sobral BW, Korbsrisate S, Gan YH, Titball RW, Bancroft GJ, Valade E, Tan P., PLoS Genet 9(9), 2013
PMID: 24068961
Characterization of four type IV pilin homologues in Stigmatella aurantiaca DSM17044 by heterologous expression in Myxococcus xanthus.
Tan Z, Li H, Pan H, Zhou X, Liu X, Luo N, Hu W, Li Y., PLoS One 8(9), 2013
PMID: 24058653
A novel cold-active xylanase from the cellulolytic myxobacterium Sorangium cellulosum So9733-1: gene cloning, expression, and enzymatic characterization.
Wang SY, Hu W, Lin XY, Wu ZH, Li YZ., Appl Microbiol Biotechnol 93(4), 2012
PMID: 21792591
New feruloyl esterases to access phenolic acids from grass biomass.
Wu M, Abokitse K, Grosse S, Leisch H, Lau PC., Appl Biochem Biotechnol 168(1), 2012
PMID: 21927859
Causes and consequences of genome expansion in fungi.
Kelkar YD, Ochman H., Genome Biol Evol 4(1), 2012
PMID: 22117086
Identification and characterization of novel cellulolytic and hemicellulolytic genes and enzymes derived from German grassland soil metagenomes.
Nacke H, Engelhaupt M, Brady S, Fischer C, Tautzt J, Daniel R., Biotechnol Lett 34(4), 2012
PMID: 22187078
Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria.
Brinkhoff T, Fischer D, Vollmers J, Voget S, Beardsley C, Thole S, Mussmann M, Kunze B, Wagner-Döbler I, Daniel R, Simon M., ISME J 6(6), 2012
PMID: 22189493
CYP264B1 from Sorangium cellulosum So ce56: a fascinating norisoprenoid and sesquiterpene hydroxylase.
Ly TT, Khatri Y, Zapp J, Hutter MC, Bernhardt R., Appl Microbiol Biotechnol 95(1), 2012
PMID: 22223101
Metabolically versatile large-genome prokaryotes.
Guieysse B, Wuertz S., Curr Opin Biotechnol 23(3), 2012
PMID: 22226959
Discovery of the rhizopodin biosynthetic gene cluster in Stigmatella aurantiaca Sg a15 by genome mining.
Pistorius D, Müller R., Chembiochem 13(3), 2012
PMID: 22278953
Characterization of species-specific repeats in 613 prokaryotic species.
Koressaar T, Remm M., DNA Res 19(3), 2012
PMID: 22368180
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A., BMC Genomics 13(), 2012
PMID: 22443545
Sulfangolids, macrolide sulfate esters from Sorangium cellulosum.
Zander W, Irschik H, Augustiniak H, Herrmann M, Jansen R, Steinmetz H, Gerth K, Kessler W, Kalesse M, Höfle G, Müller R., Chemistry 18(20), 2012
PMID: 22488821
Myxobacteria: natural pharmaceutical factories.
Diez J, Martinez JP, Mestres J, Sasse F, Frank R, Meyerhans A., Microb Cell Fact 11(), 2012
PMID: 22545867
Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259.
Huntley S, Zhang Y, Treuner-Lange A, Kneip S, Sensen CW, Søgaard-Andersen L., J Bacteriol 194(11), 2012
PMID: 22582372
Intra- and interprotein phosphorylation between two-hybrid histidine kinases controls Myxococcus xanthus developmental progression.
Schramm A, Lee B, Higgs PI., J Biol Chem 287(30), 2012
PMID: 22661709
Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system.
Lynch JB, Sonnenburg JL., Mol Microbiol 85(3), 2012
PMID: 22686399
The Nla6S protein of Myxococcus xanthus is the prototype for a new family of bacterial histidine kinases.
Sarwar Z, Garza AG., FEMS Microbiol Lett 335(2), 2012
PMID: 22812452
Predatory activity of Myxococcus xanthus outer-membrane vesicles and properties of their hydrolase cargo.
Evans AG, Davey HM, Cookson A, Currinn H, Cooke-Fox G, Stanczyk PJ, Whitworth DE., Microbiology 158(pt 11), 2012
PMID: 22977088
The growing family of photoactive yellow proteins and their presumed functional roles.
Meyer TE, Kyndt JA, Memmi S, Moser T, Colón-Acevedo B, Devreese B, Van Beeumen JJ., Photochem Photobiol Sci 11(10), 2012
PMID: 22911088
Myxococcus xanthus induces actinorhodin overproduction and aerial mycelium formation by Streptomyces coelicolor.
Pérez J, Muñoz-Dorado J, Braña AF, Shimkets LJ, Sevillano L, Santamaría RI., Microb Biotechnol 4(2), 2011
PMID: 21342463
Comparative genomic analysis of fruiting body formation in Myxococcales.
Huntley S, Hamann N, Wegener-Feldbrügge S, Treuner-Lange A, Kube M, Reinhardt R, Klages S, Müller R, Ronning CM, Nierman WC, Søgaard-Andersen L., Mol Biol Evol 28(2), 2011
PMID: 21037205
Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47.
Bergmann F, Selesi D, Weinmaier T, Tischler P, Rattei T, Meckenstock RU., Environ Microbiol 13(5), 2011
PMID: 21176053
Xenobiotic efflux in bacteria and fungi: a genomics update.
Barabote RD, Thekkiniath J, Strauss RE, Vediyappan G, Fralick JA, San Francisco MJ., Adv Enzymol Relat Areas Mol Biol 77(), 2011
PMID: 21692371
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes.
Treangen TJ, Rocha EP., PLoS Genet 7(1), 2011
PMID: 21298028
Unusual outer membrane lipid composition of the gram-negative, lipopolysaccharide-lacking myxobacterium Sorangium cellulosum So ce56.
Keck M, Gisch N, Moll H, Vorhölter FJ, Gerth K, Kahmann U, Lissel M, Lindner B, Niehaus K, Holst O., J Biol Chem 286(15), 2011
PMID: 21321121
Characterization and engineering of a novel pyrroloquinoline quinone dependent glucose dehydrogenase from Sorangium cellulosum So ce56.
Hofer M, Bönsch K, Greiner-Stöffele T, Ballschmiter M., Mol Biotechnol 47(3), 2011
PMID: 20886312
Insights into the complex biosynthesis of the leupyrrins in Sorangium cellulosum So ce690.
Kopp M, Irschik H, Gemperlein K, Buntin K, Meiser P, Weissman KJ, Bode HB, Müller R., Mol Biosyst 7(5), 2011
PMID: 21365089
Investigation of cytochromes P450 in myxobacteria: excavation of cytochromes P450 from the genome of Sorangium cellulosum So ce56.
Khatri Y, Hannemann F, Perlova O, Müller R, Bernhardt R., FEBS Lett 585(11), 2011
PMID: 21521637
Functional characterization of Fdx1: evidence for an evolutionary relationship between P450-type and ISC-type ferredoxins.
Ewen KM, Hannemann F, Iametti S, Morleo A, Bernhardt R., J Mol Biol 413(5), 2011
PMID: 21945528
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).
Chang YJ, Land M, Hauser L, Chertkov O, Del Rio TG, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinikova G, Pati A, Chen A, Palaniappan K, Mavromatis K, Liolios K, Brettin T, Fiebig A, Rohde M, Abt B, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A., Stand Genomic Sci 5(1), 2011
PMID: 22180814
A novel cold-adapted lipase from Sorangium cellulosum strain So0157-2: gene cloning, expression, and enzymatic characterization.
Cheng YY, Qian YK, Li ZF, Wu ZH, Liu H, Li YZ., Int J Mol Sci 12(10), 2011
PMID: 22072918
Ecological and temporal constraints in the evolution of bacterial genomes.
Boto L, Martínez JL., Genes (Basel) 2(4), 2011
PMID: 24710293
Genome organisation of the marine Roseobacter clade member Marinovum algicola.
Pradella S, Päuker O, Petersen J., Arch Microbiol 192(2), 2010
PMID: 20039020
Bacterial nitric oxide synthases.
Crane BR, Sudhamsu J, Patel BA., Annu Rev Biochem 79(), 2010
PMID: 20370423
Complete genome sequence of Haliangium ochraceum type strain (SMP-2).
Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Pati A, Mikhailova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Rohde M, Göker M, Bristow J, Markowitz V, Eisen JA, Hugenholtz P, Kyrpides NC, Klenk HP., Stand Genomic Sci 2(1), 2010
PMID: 21304682
Proteogenomics and systems biology: quest for the ultimate missing parts.
Armengaud J., Expert Rev Proteomics 7(1), 2010
PMID: 20121477
Myxococcus xanthus viability depends on groEL supplied by either of two genes, but the paralogs have different functions during heat shock, predation, and development.
Li J, Wang Y, Zhang CY, Zhang WY, Jiang DM, Wu ZH, Liu H, Li YZ., J Bacteriol 192(7), 2010
PMID: 20139189
Natural products version 2.0: connecting genes to molecules.
Walsh CT, Fischbach MA., J Am Chem Soc 132(8), 2010
PMID: 20121095
Biosynthesis of thuggacins in myxobacteria: comparative cluster analysis reveals basis for natural product structural diversity.
Buntin K, Irschik H, Weissman KJ, Luxenburger E, Blöcker H, Müller R., Chem Biol 17(4), 2010
PMID: 20416506
Biosynthesis of polyketides by trans-AT polyketide synthases.
Piel J., Nat Prod Rep 27(7), 2010
PMID: 20464003
The regulatory action of the myxobacterial CarD/CarG complex: a bacterial enhanceosome?
Elías-Arnanz M, Padmanabhan S, Murillo FJ., FEMS Microbiol Rev 34(5), 2010
PMID: 20561058
Myxobacterial secondary metabolites: bioactivities and modes-of-action.
Weissman KJ, Müller R., Nat Prod Rep 27(9), 2010
PMID: 20520915
Prokaryote-derived protein inhibitors of peptidases: A sketchy occurrence and mostly unknown function.
Kantyka T, Rawlings ND, Potempa J., Biochimie 92(11), 2010
PMID: 20558234
The phosphatomes of the multicellular myxobacteria Myxococcus xanthus and Sorangium cellulosum in comparison with other prokaryotic genomes.
Treuner-Lange A., PLoS One 5(6), 2010
PMID: 20567509
Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism.
Zhao W, Zhong Y, Yuan H, Wang J, Zheng H, Wang Y, Cen X, Xu F, Bai J, Han X, Lu G, Zhu Y, Shao Z, Yan H, Li C, Peng N, Zhang Z, Zhang Y, Lin W, Fan Y, Qin Z, Hu Y, Zhu B, Wang S, Ding X, Zhao GP., Cell Res 20(10), 2010
PMID: 20567260
Myxobacteria, polarity, and multicellular morphogenesis.
Kaiser D, Robinson M, Kroos L., Cold Spring Harb Perspect Biol 2(8), 2010
PMID: 20610548
Complete genome sequence of Croceibacter atlanticus HTCC2559T.
Oh HM, Kang I, Ferriera S, Giovannoni SJ, Cho JC., J Bacteriol 192(18), 2010
PMID: 20639333
Expression and physiological role of three Myxococcus xanthus copper-dependent P1B-type ATPases during bacterial growth and development.
Moraleda-Muñoz A, Pérez J, Extremera AL, Muñoz-Dorado J., Appl Environ Microbiol 76(18), 2010
PMID: 20656859
Damage of Streptococcus mutans biofilms by carolacton, a secondary metabolite from the myxobacterium Sorangium cellulosum.
Kunze B, Reck M, Dötsch A, Lemme A, Schummer D, Irschik H, Steinmetz H, Wagner-Döbler I., BMC Microbiol 10(), 2010
PMID: 20659313
Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques.
Héry M, Sanguin H, Perez Fabiel S, Lefebvre X, Vogel TM, Paul E, Alfenore S., Water Res 44(20), 2010
PMID: 20673948
Glycosylation and production characteristics of epothilones in alkali-tolerant Sorangium cellulosum strain So0157-2.
Zhao L, Li PF, Lu CH, Li SG, Shen YM, Li YZ., J Microbiol 48(4), 2010
PMID: 20799084
Correlations between the role, sequence conservation, genomic location and severity of phenotype in myxobacterial developmental genes.
Evans AR, Whitworth DE., FEMS Microbiol Lett 312(1), 2010
PMID: 20807238
Analysis of the sorangicin gene cluster reinforces the utility of a combined phylogenetic/retrobiosynthetic analysis for deciphering natural product assembly by trans-AT PKS.
Irschik H, Kopp M, Weissman KJ, Buntin K, Piel J, Müller R., Chembiochem 11(13), 2010
PMID: 20715267
Complex prokaryotic genome structure: rapid evolution of chromosome II.
Bavishi A, Abhishek A, Lin L, Choudhary M., Genome 53(9), 2010
PMID: 20924417
Marine myxobacteria as a source of antibiotics--comparison of physiology, polyketide-type genes and antibiotic production of three new isolates of Enhygromyxa salina.
Schäberle TF, Goralski E, Neu E, Erol O, Hölzl G, Dörmann P, Bierbaum G, König GM., Mar Drugs 8(9), 2010
PMID: 20948900
Bacterial NO Synthases.
Filippovich SIu., Biochemistry (Mosc) 75(10), 2010
PMID: 21166639
The CYPome of Sorangium cellulosum So ce56 and identification of CYP109D1 as a new fatty acid hydroxylase.
Khatri Y, Hannemann F, Ewen KM, Pistorius D, Perlova O, Kagawa N, Brachmann AO, Müller R, Bernhardt R., Chem Biol 17(12), 2010
PMID: 21168765
Evolution of genome architecture.
Koonin EV., Int J Biochem Cell Biol 41(2), 2009
PMID: 18929678
NtcA: a negative regulator of secondary metabolite biosynthesis in Sorangium cellulosum.
Rachid S, Gerth K, Müller R., J Biotechnol 140(1-2), 2009
PMID: 19041909
A brief tour of myxobacterial secondary metabolism.
Weissman KJ, Müller R., Bioorg Med Chem 17(6), 2009
PMID: 19109025
Establishment of a high content assay for the identification and characterisation of bioactivities in crude bacterial extracts that interfere with the eukaryotic cell cycle.
Jensen NA, Gerth K, Grotjohann T, Kapp D, Keck M, Niehaus K., J Biotechnol 140(1-2), 2009
PMID: 19111838
Identification of additional players in the alternative biosynthesis pathway to isovaleryl-CoA in the myxobacterium Myxococcus xanthus.
Bode HB, Ring MW, Schwär G, Altmeyer MO, Kegler C, Jose IR, Singer M, Müller R., Chembiochem 10(1), 2009
PMID: 18846531
Unusual chemistry in the biosynthesis of the antibiotic chondrochlorens.
Rachid S, Scharfe M, Blöcker H, Weissman KJ, Müller R., Chem Biol 16(1), 2009
PMID: 19171307
Sociobiology of the myxobacteria.
Velicer GJ, Vos M., Annu Rev Microbiol 63(), 2009
PMID: 19575567
Novel expression hosts for complex secondary metabolite megasynthetases: Production of myxochromide in the thermopilic isolate Corallococcus macrosporus GT-2.
Perlova O, Gerth K, Kuhlmann S, Zhang Y, Müller R., Microb Cell Fact 8(), 2009
PMID: 19126236
Darwinian evolution in the light of genomics.
Koonin EV., Nucleic Acids Res 37(4), 2009
PMID: 19213802
The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19297685
Total synthesis of (-)-spirangien A, an antimitotic polyketide isolated from the myxobacterium Sorangium cellulosum.
Paterson I, Findlay AD, Noti C., Chem Asian J 4(4), 2009
PMID: 19173216
Bacterial nitric oxide synthases: what are they good for?
Sudhamsu J, Crane BR., Trends Microbiol 17(5), 2009
PMID: 19375324
Myxobacteria--'microbial factories' for the production of bioactive secondary metabolites.
Wenzel SC, Müller R., Mol Biosyst 5(6), 2009
PMID: 19462013
The consequences of genetic drift for bacterial genome complexity.
Kuo CH, Moran NA, Ochman H., Genome Res 19(8), 2009
PMID: 19502381
Natural paradigms of plant cell wall degradation.
Wei H, Xu Q, Taylor LE, Baker JO, Tucker MP, Ding SY., Curr Opin Biotechnol 20(3), 2009
PMID: 19523812
Are there lateral as well as polar engines for A-motile gliding in myxobacteria?
Kaiser D., J Bacteriol 191(17), 2009
PMID: 19581372
Non-modular polyketide synthases in myxobacteria.
Li Y, Müller R., Phytochemistry 70(15-16), 2009
PMID: 19586645
Isoprenoids are essential for fruiting body formation in Myxococcus xanthus.
Lorenzen W, Ring MW, Schwär G, Bode HB., J Bacteriol 191(18), 2009
PMID: 19617362
The impact of genomics on the exploitation of the myxobacterial secondary metabolome.
Wenzel SC, Müller R., Nat Prod Rep 26(11), 2009
PMID: 19844638
Biosynthesis of 2-hydroxy and iso-even fatty acids is connected to sphingolipid formation in myxobacteria.
Ring MW, Schwär G, Bode HB., Chembiochem 10(12), 2009
PMID: 19575369
Antibiotics from microbes: converging to kill.
Fischbach MA., Curr Opin Microbiol 12(5), 2009
PMID: 19695947
Genome mining in Sorangium cellulosum So ce56: identification and characterization of the homologous electron transfer proteins of a myxobacterial cytochrome P450.
Ewen KM, Hannemann F, Khatri Y, Perlova O, Kappl R, Krug D, Hüttermann J, Müller R, Bernhardt R., J Biol Chem 284(42), 2009
PMID: 19696019
Myxococcus xanthus Pph2 is a manganese-dependent protein phosphatase involved in energy metabolism.
García-Hernández R, Moraleda-Muñoz A, Castañeda-García A, Pérez J, Muñoz-Dorado J., J Biol Chem 284(42), 2009
PMID: 19706604
NO formation by a catalytically self-sufficient bacterial nitric oxide synthase from Sorangium cellulosum.
Agapie T, Suseno S, Woodward JJ, Stoll S, Britt RD, Marletta MA., Proc Natl Acad Sci U S A 106(38), 2009
PMID: 19805284
Genome variation in the symbiotic nitrogen-fixing bacterium Sinorhizobium meliloti.
Guo H, Sun S, Eardly B, Finan T, Xu J., Genome 52(10), 2009
PMID: 19935910
Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches.
Wang Q, Yang M, Xiao J, Wu H, Wang X, Lv Y, Xu L, Zheng H, Wang S, Zhao G, Liu Q, Zhang Y., PLoS One 4(10), 2009
PMID: 19865481
De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.
Bertsch A, Leinenbach A, Pervukhin A, Lubeck M, Hartmer R, Baessmann C, Elnakady YA, Müller R, Böcker S, Huber CG, Kohlbacher O., Electrophoresis 30(21), 2009
PMID: 19862751
Production of the antifungal isochromanone ajudazols A and B in Chondromyces crocatus Cm c5: biosynthetic machinery and cytochrome P450 modifications.
Buntin K, Rachid S, Scharfe M, Blöcker H, Weissman KJ, Müller R., Angew Chem Int Ed Engl 47(24), 2008
PMID: 18461592
Myxococcus-from single-cell polarity to complex multicellular patterns.
Kaiser D., Annu Rev Genet 42(), 2008
PMID: 18605899
Social bacteria and asocial eukaryotes.
Galperin MY., Environ Microbiol 10(2), 2008
PMID: 18199122
Cloning and characterization of an rRNA methyltransferase from Sorangium cellulosum.
Zhao JY, Xia ZJ, Sun X, Zhong L, Jiang DM, Liu H, Wang J, Qin ZJ, Li YZ., Biochem Biophys Res Commun 370(1), 2008
PMID: 18355448
Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity.
Krug D, Zurek G, Revermann O, Vos M, Velicer GJ, Müller R., Appl Environ Microbiol 74(10), 2008
PMID: 18378661
Unpublished but public microbial genomes with biotechnological relevance.
Siezen RJ, Wilson G., Microb Biotechnol 1(3), 2008
PMID: 21261839
The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria.
Thomas SH, Wagner RD, Arakaki AK, Skolnick J, Kirby JR, Shimkets LJ, Sanford RA, Löffler FE., PLoS One 3(5), 2008
PMID: 18461135
Origins of replication in Sorangium cellulosum and Microcystis aeruginosa.
Gao F, Zhang CT., DNA Res 15(3), 2008
PMID: 18477575
Total biosynthesis: in vitro reconstitution of polyketide and nonribosomal peptide pathways.
Sattely ES, Fischbach MA, Walsh CT., Nat Prod Rep 25(4), 2008
PMID: 18663394
Mutation in the rel gene of Sorangium cellulosum affects morphological and physiological differentiation.
Knauber T, Doss SD, Gerth K, Perlova O, Müller R, Treuner-Lange A., Mol Microbiol 69(1), 2008
PMID: 18513216
Progress towards understanding the fate of plasmids in bacterial communities.
Slater FR, Bailey MJ, Tett AJ, Turner SL., FEMS Microbiol Ecol 66(1), 2008
PMID: 18507680
Efficient mining of myxobacterial metabolite profiles enabled by liquid chromatography-electrospray ionisation-time-of-flight mass spectrometry and compound-based principal component analysis.
Krug D, Zurek G, Schneider B, Garcia R, Müller R., Anal Chim Acta 624(1), 2008
PMID: 18706314
Two functionally redundant Sfp-type 4'-phosphopantetheinyl transferases differentially activate biosynthetic pathways in Myxococcus xanthus.
Meiser P, Müller R., Chembiochem 9(10), 2008
PMID: 18506874
Natural products genomics.
Siezen RJ, Khayatt BI., Microb Biotechnol 1(4), 2008
PMID: 21261848
Improving conjugation efficacy of Sorangium cellulosum by the addition of dual selection antibiotics.
Xia ZJ, Wang J, Hu W, Liu H, Gao XZ, Wu ZH, Zhang PY, Li YZ., J Ind Microbiol Biotechnol 35(10), 2008
PMID: 18629560
Genomes and knowledge - a questionable relationship?
Whitworth DE., Trends Microbiol 16(11), 2008
PMID: 18819801
Eukaryotic-like protein kinases in the prokaryotes and the myxobacterial kinome.
Pérez J, Castañeda-García A, Jenke-Kodama H, Müller R, Muñoz-Dorado J., Proc Natl Acad Sci U S A 105(41), 2008
PMID: 18836084
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.
Koonin EV, Wolf YI., Nucleic Acids Res 36(21), 2008
PMID: 18948295
Taxonomic analysis of Sorangium strains based on HSP60 and 16S rRNA gene sequences and morphology.
Jiang DM, Zhao L, Zhang CY, Li J, Xia ZJ, Wang J, Wu ZH, Li YZ., Int J Syst Evol Microbiol 58(pt 11), 2008
PMID: 18984709
New trends in pharmacogenomic strategies against resistance development in microbial infections.
Ohlsen K, Dandekar G, Schwarz R, Dandekar T., Pharmacogenomics 9(11), 2008
PMID: 19018725
Phenylnannolones A-C: biosynthesis of new secondary metabolites from the myxobacterium Nannocystis exedens.
Ohlendorf B, Leyers S, Krick A, Kehraus S, Wiese M, König GM., Chembiochem 9(18), 2008
PMID: 19040244

50 References

Daten bereitgestellt von Europe PubMed Central.

Myxobacteria: proficient producers of novel natural products with various biological activities--past and future biotechnological aspects with the focus on the genus Sorangium.
Gerth K, Pradella S, Perlova O, Beyer S, Muller R., J. Biotechnol. 106(2-3), 2003
PMID: 14651865
Epothilons A and B: antifungal and cytotoxic compounds from Sorangium cellulosum (Myxobacteria). Production, physico-chemical and biological properties.
Gerth K, Bedorf N, Hofle G, Irschik H, Reichenbach H., J. Antibiot. 49(6), 1996
PMID: 8698639
Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.
Fischbach MA, Walsh CT., Chem. Rev. 106(8), 2006
PMID: 16895337

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Evolution of sensory complexity recorded in a myxobacterial genome.
Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Eisen J, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, Mackenzie C, Madupu R, Miller N, Shvartsbeyn A, Sullivan SA, Vaudin M, Wiegand R, Kaplan HB., Proc. Natl. Acad. Sci. U.S.A. 103(41), 2006
PMID: 17015832
Characterisation, genome size and genetic manipulation of the myxobacterium Sorangium cellulosum So ce56.
Pradella S, Hans A, Sproer C, Reichenbach H, Gerth K, Beyer S., Arch. Microbiol. 178(6), 2002
PMID: 12420170
Novel insights into siderophore formation in myxobacteria.
Gaitatzis N, Kunze B, Muller R., Chembiochem 6(2), 2005
PMID: 15678426
Detecting pathogenicity islands and anomalous gene clusters by iterative discriminant analysis.
Tu Q, Ding D., FEMS Microbiol. Lett. 221(2), 2003
PMID: 12725938
The PE multigene family: a 'molecular mantra' for mycobacteria.
Brennan MJ, Delogu G., Trends Microbiol. 10(5), 2002
PMID: 11973159
Functional genome annotation through phylogenomic mapping.
Srinivasan BS, Caberoy NB, Suen G, Taylor RG, Shah R, Tengra F, Goldman BS, Garza AG, Welch RD., Nat. Biotechnol. 23(6), 2005
PMID: 15940241

AUTHOR UNKNOWN, 0
Comparative analysis of four Campylobacterales.
Eppinger M, Baar C, Raddatz G, Huson DH, Schuster SC., Nat. Rev. Microbiol. 2(11), 2004
PMID: 15494744
Gene organization: selection, selfishness, and serendipity.
Lawrence JG., Annu. Rev. Microbiol. 57(), 2003
PMID: 14527286
Nutrition of Myxococcus xanthus, a fruiting myxobacterium.
Bretscher AP, Kaiser D., J. Bacteriol. 133(2), 1978
PMID: 415048
Comparative intermediary metabolism of vegetative cells and microcysts of Myxococcus xanthus.
Watson BF, Dworkin M., J. Bacteriol. 96(5), 1968
PMID: 4302296
Identification of genes required for adventurous gliding motility in Myxococcus xanthus with the transposable element mariner.
Youderian P, Burke N, White DJ, Hartzell PL., Mol. Microbiol. 49(2), 2003
PMID: 12828649
Transposon insertions of magellan-4 that impair social gliding motility in Myxococcus xanthus.
Youderian P, Hartzell PL., Genetics 172(3), 2005
PMID: 16299386
Protein length in eukaryotic and prokaryotic proteomes.
Brocchieri L, Karlin S., Nucleic Acids Res. 33(10), 2005
PMID: 15951512
GenAlyzer: interactive visualization of sequence similarities between entire genomes.
Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R., Bioinformatics 20(12), 2004
PMID: 14988113

AUTHOR UNKNOWN, 0
Structural and functional diversity of the microbial kinome.
Kannan N, Taylor SS, Zhai Y, Venter JC, Manning G., PLoS Biol. 5(3), 2007
PMID: 17355172
Genomic analysis of protein kinases, protein phosphatases and two-component regulatory systems of the cyanobacterium Anabaena sp. strain PCC 7120.
Wang L, Sun YP, Chen WL, Li JH, Zhang CC., FEMS Microbiol. Lett. 217(2), 2002
PMID: 12480098
Eukaryotic-type protein kinases in Streptomyces coelicolor: variations on a common theme.
Petrickova K, Petricek M., Microbiology (Reading, Engl.) 149(Pt 7), 2003
PMID: 12855714
Etnangien, a macrolide-polyene antibiotic from Sorangium cellulosum that inhibits nucleic acid polymerases.
Irschik H, Schummer D, Hofle G, Reichenbach H, Steinmetz H, Jansen R., J. Nat. Prod. 70(6), 2007
PMID: 17547459

AUTHOR UNKNOWN, 0
Proteome analysis of Myxococcus xanthus by off-line two-dimensional chromatographic separation using monolithic poly-(styrene-divinylbenzene) columns combined with ion-trap tandem mass spectrometry.
Schley C, Altmeyer MO, Swart R, Muller R, Huber CG., J. Proteome Res. 5(10), 2006
PMID: 17022647
Molecular breeding of carotenoid biosynthetic pathways.
Schmidt-Dannert C, Umeno D, Arnold FH., Nat. Biotechnol. 18(7), 2000
PMID: 10888843
A novel type of geosmin biosynthesis in myxobacteria.
Dickschat JS, Bode HB, Mahmud T, Muller R, Schulz S., J. Org. Chem. 70(13), 2005
PMID: 15960521
Geosmin biosynthesis. Streptomyces coelicolor germacradienol/germacrene D synthase converts farnesyl diphosphate to geosmin.
Jiang J, He X, Cane DE., J. Am. Chem. Soc. 128(25), 2006
PMID: 16787064
Possibility of bacterial recruitment of plant genes associated with the biosynthesis of secondary metabolites.
Bode HB, Muller R., Plant Physiol. 132(3), 2003
PMID: 12857798
Overexpression of a gene cluster encoding a chalcone synthase-like protein confers redbrown pigment production in Streptomyces griseus.
Ueda K, Kim KM, Beppu T, Horinouchi S., J. Antibiot. 48(7), 1995
PMID: 7649862
Bacterial type III polyketide synthases: phylogenetic analysis and potential for the production of novel secondary metabolites by heterologous expression in pseudomonads.
Gross F, Luniak N, Perlova O, Gaitatzis N, Jenke-Kodama H, Gerth K, Gottschalk D, Dittmann E, Muller R., Arch. Microbiol. 185(1), 2006
PMID: 16395556
Lipase-specific foldases.
Rosenau F, Tommassen J, Jaeger KE., Chembiochem 5(2), 2004
PMID: 14760735
Recent advances in the biocatalytic reduction of ketones and oxidation of sec-alcohols.
Kroutil W, Mang H, Edegger K, Faber K., Curr Opin Chem Biol 8(2), 2004
PMID: 15062771
Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.
Rey MW, Ramaiya P, Nelson BA, Brody-Karpin SD, Zaretsky EJ, Tang M, Lopez de Leon A, Xiang H, Gusti V, Clausen IG, Olsen PB, Rasmussen MD, Andersen JT, Jorgensen PL, Larsen TS, Sorokin A, Bolotin A, Lapidus A, Galleron N, Ehrlich SD, Berka RM., Genome Biol. 5(10), 2004
PMID: 15461803
[The study of enzymatic cellulolysis of Sorangium composition]
Coucke P, Voets JP., Ann Inst Pasteur (Paris) 115(4), 1968
PMID: 4880382
Deciphering regulatory mechanisms for secondary metabolite production in the myxobacterium Sorangium cellulosum So ce56.
Rachid S, Gerth K, Kochems I, Muller R., Mol. Microbiol. 63(6), 2007
PMID: 17367395
Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
Ewing B, Hillier L, Wendl MC, Green P., Genome Res. 8(3), 1998
PMID: 9521921
Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique.
Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651855
Automated finishing with autofinish.
Gordon D, Desmarais C, Green P., Genome Res. 11(4), 2001
PMID: 11282977
BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bartels D, Kespohl S, Albaum S, Druke T, Goesmann A, Herold J, Kaiser O, Puhler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC., Bioinformatics 21(7), 2004
PMID: 15514001
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
The Gene Ontology (GO) database and informatics resource.
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681407
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
Boyle EI, Weng S, Gollub J, Jin H, Botstein D, Cherry JM, Sherlock G., Bioinformatics 20(18), 2004
PMID: 15297299
Identification and analysis of the chivosazol biosynthetic gene cluster from the myxobacterial model strain Sorangium cellulosum So ce56.
Perlova O, Gerth K, Kaiser O, Hans A, Muller R., J. Biotechnol. 121(2), 2005
PMID: 16313990
Phosphoric acid as a matrix additive for MALDI MS analysis of phosphopeptides and phosphoproteins.
Kjellstrom S, Jensen ON., Anal. Chem. 76(17), 2004
PMID: 15373450
Rapid identification of proteins by peptide-mass fingerprinting.
Pappin DJ, Hojrup P, Bleasby AJ., Curr. Biol. 3(6), 1993
PMID: 15335725
Electrospray tandem mass spectrometric studies of phosphopeptides and phosphopeptide analogues.
Tholey A, Reed J, Lehmann WD., J Mass Spectrom 34(2), 1999
PMID: 12440389
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