Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, et al. (2013)
BMC Genomics 14(1): 926.
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| Veröffentlicht | Englisch
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BACKGROUND: Microalgae are gaining importance as sustainable production hosts in the fields of biotechnology and bioenergy. A robust biomass accumulating strainof the genus Monoraphidium (SAG 48.87) was investigated in this work as apotential feedstock for biofuel production. The genome was sequenced, annotated, and key enzymes for triacylglycerol formation were elucidated.
RESULTS: Monoraphidium neglectum was identified as an oleaginous species with favourable growth characteristics as well as a high potential for crude oil production, based on neutral lipid contents of approximately 21% (dry weight) under nitrogen starvation, composed of predominantly C18:1 and C16:0 fatty acids. Further characterization revealed growth in a relatively wide pH range and salt concentrations of up to 1.0% NaCl, in which the cells exhibited larger structures. This first full genome sequencing of a member of the Selenastraceae revealed a diploid, approximately 68 Mbp genome with a G + C content of 64.7%. The circular chloroplast genome was assembled to a 135,362 bp single contig, containing 67 protein-coding genes. The assembly of the mitochondrial genome resulted in two contigs with an approximate total size of 94 kb, the largest known mitochondrial genome within algae. 16,761 protein-coding genes were assigned to the nuclear genome. Comparison of gene sets with respect to functional categories revealed a higher gene number assigned to the category "carbohydrate metabolic process" and in "fatty acid biosynthetic process" in M. neglectum when compared to Chlamydomonas reinhardtii and Nannochloropsis gaditana, indicating a higher metabolic diversity for applications in carbohydrate conversions of biotechnological relevance.
CONCLUSIONS: The genome of M. neglectum, as well as the metabolic reconstruction of crucial lipid pathways, provides new insights into the diversity of the lipid metabolism in microalgae. The results of this work provide a platform to encourage the development of this strain for biotechnological applications and production concepts.
Erscheinungsjahr
2013
Zeitschriftentitel
BMC Genomics
Band
14
Ausgabe
1
Art.-Nr.
926
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/2645668
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Bogen C, Al-Dilaimi A, Albersmeier A, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics. 2013;14(1): 926.
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1), 926. doi:10.1186/1471-2164-14-926
Bogen, Christian, Al-Dilaimi, Arwa, Albersmeier, Andreas, Wichmann, Julian, Grundmann, Michael, Rupp, Oliver, Lauersen, Kyle J., et al. 2013. “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”. BMC Genomics 14 (1): 926.
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14:926.
Bogen, C., et al., 2013. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1): 926.
C. Bogen, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, vol. 14, 2013, : 926.
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K.J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., Mussgnug, J.H., Kruse, O.: Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics. 14, : 926 (2013).
Bogen, Christian, Al-Dilaimi, Arwa, Albersmeier, Andreas, Wichmann, Julian, Grundmann, Michael, Rupp, Oliver, Lauersen, Kyle J., Blifernez-Klassen, Olga, Kalinowski, Jörn, Goesmann, Alexander, Mussgnug, Jan H., and Kruse, Olaf. “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”. BMC Genomics 14.1 (2013): 926.
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Uncharacterized protein (UNIPROT: A0A0D2IT46)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Uncharacterized protein (UNIPROT: A0A0D2IT53)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Uncharacterized protein (UNIPROT: A0A0D2IT57)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Coproporphyrinogen III oxidase (UNIPROT: A0A0D2IT61)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Uncharacterized protein (UNIPROT: A0A0D2IT66)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Uncharacterized protein (UNIPROT: A0A0D2IT72)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Uncharacterized protein (UNIPROT: A0A0D2IT86)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Natural resistance-associated macrophage protein (UNIPROT: A0A0D2IT92)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Uncharacterized protein (UNIPROT: A0A0D2IT97)
Organism: Monoraphidium neglectum
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Organism: Monoraphidium neglectum
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Bogen C, Klassen V, Wichmann J, La Russa M, Doebbe A, Grundmann M, Uronen P, Kruse O, Mussgnug JH., Bioresour. Technol. 133(), 2013
PMID: 23453981
Bogen C, Klassen V, Wichmann J, La Russa M, Doebbe A, Grundmann M, Uronen P, Kruse O, Mussgnug JH., Bioresour. Technol. 133(), 2013
PMID: 23453981
Genomic insights from the oleaginous model alga Nannochloropsis gaditana.
Jinkerson RE, Radakovits R, Posewitz MC., Bioengineered 4(1), 2012
PMID: 22922732
Jinkerson RE, Radakovits R, Posewitz MC., Bioengineered 4(1), 2012
PMID: 22922732
Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana.
Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC., Nat Commun 3(), 2012
PMID: 22353717
Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC., Nat Commun 3(), 2012
PMID: 22353717
Microalgae in the postgenomic era: a blooming reservoir for new natural products.
Sasso S, Pohnert G, Lohr M, Mittag M, Hertweck C., FEMS Microbiol. Rev. 36(4), 2011
PMID: 22091538
Sasso S, Pohnert G, Lohr M, Mittag M, Hertweck C., FEMS Microbiol. Rev. 36(4), 2011
PMID: 22091538
Culture of microalgal strains isolated from natural habitats in Thailand in various enriched media
AUTHOR UNKNOWN, 2012
AUTHOR UNKNOWN, 2012
Isolation of a novel strain of Monoraphidium sp. and characterization of its potential application as biodiesel feedstock
AUTHOR UNKNOWN, 2012
AUTHOR UNKNOWN, 2012
Traditional generic concepts versus 18S rRNA gene phylogeny in the green algal family Selenastraceae (Chlorophyceae, Chlorophyta)
AUTHOR UNKNOWN, 2001
AUTHOR UNKNOWN, 2001
Lipid productivity as a key characteristic for choosing algal species for biodiesel production
AUTHOR UNKNOWN, 2009
AUTHOR UNKNOWN, 2009
Cultivation, photobioreactor design and harvesting of microalgae for biodiesel production: a critical review.
Chen CY, Yeh KL, Aisyah R, Lee DJ, Chang JS., Bioresour. Technol. 102(1), 2010
PMID: 20674344
Chen CY, Yeh KL, Aisyah R, Lee DJ, Chang JS., Bioresour. Technol. 102(1), 2010
PMID: 20674344
The microalga Parachlorella kessleri--a novel highly efficient lipid producer.
Li X, Pribyl P, Bisova K, Kawano S, Cepak V, Zachleder V, Cizkova M, Branyikova I, Vitova M., Biotechnol. Bioeng. 110(1), 2012
PMID: 22766749
Li X, Pribyl P, Bisova K, Kawano S, Cepak V, Zachleder V, Cizkova M, Branyikova I, Vitova M., Biotechnol. Bioeng. 110(1), 2012
PMID: 22766749
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A., J. Biotechnol. 167(2), 2012
PMID: 23280342
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A., J. Biotechnol. 167(2), 2012
PMID: 23280342
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
AUTHOR UNKNOWN, 2007
AUTHOR UNKNOWN, 2007
Gene prediction with a hidden Markov model and a new intron submodel.
Stanke M, Waack S., Bioinformatics 19 Suppl 2(), 2003
PMID: 14534192
Stanke M, Waack S., Bioinformatics 19 Suppl 2(), 2003
PMID: 14534192
Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES
AUTHOR UNKNOWN, 2002
AUTHOR UNKNOWN, 2002
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR., Genome Biol. 9(1), 2008
PMID: 18190707
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR., Genome Biol. 9(1), 2008
PMID: 18190707
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications.
Simpson CL, Stern DB., Plant Physiol. 129(3), 2002
PMID: 12114552
Simpson CL, Stern DB., Plant Physiol. 129(3), 2002
PMID: 12114552
Genomics and evolution of cellular organelles
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
Dinoflagellates: a mitochondrial genome all at sea.
Nash EA, Nisbet RE, Barbrook AC, Howe CJ., Trends Genet. 24(7), 2008
PMID: 18514360
Nash EA, Nisbet RE, Barbrook AC, Howe CJ., Trends Genet. 24(7), 2008
PMID: 18514360
Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology.
Waller RF, Jackson CJ., Bioessays 31(2), 2009
PMID: 19204978
Waller RF, Jackson CJ., Bioessays 31(2), 2009
PMID: 19204978
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Microalga Scenedesmus obliquus as a potential source for biodiesel production.
Mandal S, Mallick N., Appl. Microbiol. Biotechnol. 84(2), 2009
PMID: 19330327
Mandal S, Mallick N., Appl. Microbiol. Biotechnol. 84(2), 2009
PMID: 19330327
InterPro in 2011: new developments in the family and domain prediction database.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY., Nucleic Acids Res. 40(Database issue), 2011
PMID: 22096229
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY., Nucleic Acids Res. 40(Database issue), 2011
PMID: 22096229
Molecular genetics of lipid metabolism in the model green alga Chlamydomonas reinhardtii
AUTHOR UNKNOWN, 2009
AUTHOR UNKNOWN, 2009
Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation.
Rismani-Yazdi H, Haznedaroglu BZ, Hsin C, Peccia J., Biotechnol Biofuels 5(1), 2012
PMID: 23006831
Rismani-Yazdi H, Haznedaroglu BZ, Hsin C, Peccia J., Biotechnol Biofuels 5(1), 2012
PMID: 23006831
Functional analysis of three type-2 DGAT homologue genes for triacylglycerol production in the green microalga Chlamydomonas reinhardtii.
La Russa M, Bogen C, Uhmeyer A, Doebbe A, Filippone E, Kruse O, Mussgnug JH., J. Biotechnol. 162(1), 2012
PMID: 22542934
La Russa M, Bogen C, Uhmeyer A, Doebbe A, Filippone E, Kruse O, Mussgnug JH., J. Biotechnol. 162(1), 2012
PMID: 22542934
Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas.
Boyle NR, Page MD, Liu B, Blaby IK, Casero D, Kropat J, Cokus SJ, Hong-Hermesdorf A, Shaw J, Karpowicz SJ, Gallaher SD, Johnson S, Benning C, Pellegrini M, Grossman A, Merchant SS., J. Biol. Chem. 287(19), 2012
PMID: 22403401
Boyle NR, Page MD, Liu B, Blaby IK, Casero D, Kropat J, Cokus SJ, Hong-Hermesdorf A, Shaw J, Karpowicz SJ, Gallaher SD, Johnson S, Benning C, Pellegrini M, Grossman A, Merchant SS., J. Biol. Chem. 287(19), 2012
PMID: 22403401
Tobacco as a production platform for biofuel: overexpression of Arabidopsis DGAT and LEC2 genes increases accumulation and shifts the composition of lipids in green biomass.
Andrianov V, Borisjuk N, Pogrebnyak N, Brinker A, Dixon J, Spitsin S, Flynn J, Matyszczuk P, Andryszak K, Laurelli M, Golovkin M, Koprowski H., Plant Biotechnol. J. 8(3), 2009
PMID: 20051035
Andrianov V, Borisjuk N, Pogrebnyak N, Brinker A, Dixon J, Spitsin S, Flynn J, Matyszczuk P, Andryszak K, Laurelli M, Golovkin M, Koprowski H., Plant Biotechnol. J. 8(3), 2009
PMID: 20051035
Metabolic and cellular organization in evolutionarily diverse microalgae as related to biofuels production.
Hildebrand M, Abbriano RM, Polle JE, Traller JC, Trentacoste EM, Smith SR, Davis AK., Curr Opin Chem Biol 17(3), 2013
PMID: 23538202
Hildebrand M, Abbriano RM, Polle JE, Traller JC, Trentacoste EM, Smith SR, Davis AK., Curr Opin Chem Biol 17(3), 2013
PMID: 23538202
Phospholipid:diacylglycerol acyltransferase is a multifunctional enzyme involved in membrane lipid turnover and degradation while synthesizing triacylglycerol in the unicellular green microalga Chlamydomonas reinhardtii.
Yoon K, Han D, Li Y, Sommerfeld M, Hu Q., Plant Cell 24(9), 2012
PMID: 23012436
Yoon K, Han D, Li Y, Sommerfeld M, Hu Q., Plant Cell 24(9), 2012
PMID: 23012436
Physiological role of neutral lipid accumulation in eukaryotic microalgae under stresses
AUTHOR UNKNOWN, 2012
AUTHOR UNKNOWN, 2012
Continuous microalgae cultivation in a photobioreactor.
Tang H, Chen M, Ng KY, Salley SO., Biotechnol. Bioeng. 109(10), 2012
PMID: 22488253
Tang H, Chen M, Ng KY, Salley SO., Biotechnol. Bioeng. 109(10), 2012
PMID: 22488253
Production of lipids in 10 strains of Chlorella and Parachlorella, and enhanced lipid productivity in Chlorella vulgaris.
Pribyl P, Cepak V, Zachleder V., Appl. Microbiol. Biotechnol. 94(2), 2012
PMID: 22361856
Pribyl P, Cepak V, Zachleder V., Appl. Microbiol. Biotechnol. 94(2), 2012
PMID: 22361856
Effect of salt concentration on intracellular accumulation of lipids and triacylglyceride in marine microalgae Dunaliella cells.
Takagi M, Karseno , Yoshida T., J. Biosci. Bioeng. 101(3), 2006
PMID: 16716922
Takagi M, Karseno , Yoshida T., J. Biosci. Bioeng. 101(3), 2006
PMID: 16716922
Biomass, lipid content, and fatty acid composition of freshwater Chlamydomonas mexicana and Scenedesmus obliquus grown under salt stress
AUTHOR UNKNOWN, 2013
AUTHOR UNKNOWN, 2013
Growth of oil accumulating microalga Neochloris oleoabundans under alkaline–saline conditions
AUTHOR UNKNOWN, 2012
AUTHOR UNKNOWN, 2012
Marine diatom, Navicula sp. strain JPCC DA0580 and marine green alga, Chlorella sp. strain NKG400014 as potential sources for biodiesel production.
Matsumoto M, Sugiyama H, Maeda Y, Sato R, Tanaka T, Matsunaga T., Appl. Biochem. Biotechnol. 161(1-8), 2009
PMID: 19756412
Matsumoto M, Sugiyama H, Maeda Y, Sato R, Tanaka T, Matsunaga T., Appl. Biochem. Biotechnol. 161(1-8), 2009
PMID: 19756412
A review of the harvesting of micro-algae for biofuel production
AUTHOR UNKNOWN, 2013
AUTHOR UNKNOWN, 2013
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, Salamov A, Terry A, Yamada T, Dunigan DD, Grigoriev IV, Claverie JM, Van Etten JL., Plant Cell 22(9), 2010
PMID: 20852019
Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, Salamov A, Terry A, Yamada T, Dunigan DD, Grigoriev IV, Claverie JM, Van Etten JL., Plant Cell 22(9), 2010
PMID: 20852019
Plastid origin and evolution: new models provide insights into old problems.
Chan CX, Gross J, Yoon HS, Bhattacharya D., Plant Physiol. 155(4), 2011
PMID: 21343425
Chan CX, Gross J, Yoon HS, Bhattacharya D., Plant Physiol. 155(4), 2011
PMID: 21343425
Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana.
Oudot-Le Secq MP, Green BR., Gene 476(1-2), 2011
PMID: 21320580
Oudot-Le Secq MP, Green BR., Gene 476(1-2), 2011
PMID: 21320580
Review. Methodologies for transferring DNA into eukaryotic microalgae
AUTHOR UNKNOWN, 2006
AUTHOR UNKNOWN, 2006
Characterization of a novel thioesterase (PtTE) from Phaeodactylum tricornutum.
Gong Y, Guo X, Wan X, Liang Z, Jiang M., J. Basic Microbiol. 51(6), 2011
PMID: 21656819
Gong Y, Guo X, Wan X, Liang Z, Jiang M., J. Basic Microbiol. 51(6), 2011
PMID: 21656819
The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants.
Hockin NL, Mock T, Mulholland F, Kopriva S, Malin G., Plant Physiol. 158(1), 2011
PMID: 22065419
Hockin NL, Mock T, Mulholland F, Kopriva S, Malin G., Plant Physiol. 158(1), 2011
PMID: 22065419
A chloroplast pathway for the de novo biosynthesis of triacylglycerol in Chlamydomonas reinhardtii.
Fan J, Andre C, Xu C., FEBS Lett. 585(12), 2011
PMID: 21575636
Fan J, Andre C, Xu C., FEBS Lett. 585(12), 2011
PMID: 21575636
A simple method for the isolation and purification of total lipides from animal tissues.
FOLCH J, LEES M, SLOANE STANLEY GH., J. Biol. Chem. 226(1), 1957
PMID: 13428781
FOLCH J, LEES M, SLOANE STANLEY GH., J. Biol. Chem. 226(1), 1957
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Chlamydomonas starchless mutant defective in ADP-glucose pyrophosphorylase hyper-accumulates triacylglycerol.
Li Y, Han D, Hu G, Dauvillee D, Sommerfeld M, Ball S, Hu Q., Metab. Eng. 12(4), 2010
PMID: 20172043
Li Y, Han D, Hu G, Dauvillee D, Sommerfeld M, Ball S, Hu Q., Metab. Eng. 12(4), 2010
PMID: 20172043
Rapid isolation of high molecular weight plant DNA.
Murray MG, Thompson WF., Nucleic Acids Res. 8(19), 1980
PMID: 7433111
Murray MG, Thompson WF., Nucleic Acids Res. 8(19), 1980
PMID: 7433111
Viewing and Editing Assembled Sequences Using Consed
AUTHOR UNKNOWN, 2003
AUTHOR UNKNOWN, 2003
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Schattner P, Brooks AN, Lowe TM., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980563
Schattner P, Brooks AN, Lowe TM., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980563
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
AUTHOR UNKNOWN, 1997
AUTHOR UNKNOWN, 1997
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
AUTHOR UNKNOWN, 1993
AUTHOR UNKNOWN, 1993
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S., Mol. Biol. Evol. 28(10), 2011
PMID: 21546353
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S., Mol. Biol. Evol. 28(10), 2011
PMID: 21546353
Enzyme-specific profiles for genome annotation: PRIAM.
Claudel-Renard C, Chevalet C, Faraut T, Kahn D., Nucleic Acids Res. 31(22), 2003
PMID: 14602924
Claudel-Renard C, Chevalet C, Faraut T, Kahn D., Nucleic Acids Res. 31(22), 2003
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