Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon

Beckers G, Strosser J, Hildebrandt U, Kalinowski J, Farwick M, Kramer R, Burkovski A (2005)
MOLECULAR MICROBIOLOGY 58(2): 580-595.

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Autor*in
Beckers, G; Strosser, J; Hildebrandt, U; Kalinowski, JörnUniBi; Farwick, M; Kramer, R; Burkovski, A
Abstract / Bemerkung
AmtR, the master regulator of nitrogen control in Corynebacterium glutamicum, represses transcription of a number of genes during nitrogen surplus. Repression is released by an interaction of AmtR with signal transduction protein GlnK. As shown by pull-down assays and gel retardation experiments, only adenylylated GlnK, which is present in the cells during nitrogen limitation, is able to bind to AmtR. The AmtR regulon was characterized in this study by a combination of bioinformatics, transcriptome and proteome analyses. At least 33 genes are directly controlled by the repressor protein including those encoding transporters and enzymes for ammonium assimilation (amtA, amtB, glnA, gltBD), urea and creatinine metabolism (urtABCDE, ureABCEFGD, crnT, codA), a number of biochemically uncharacterized enzymes and transport systems (NCgl1099, NCgl1100, NCgl 1915-1918) as well as signal transduction proteins (glnD, glnK). For the AmtR regulon, an AmtR box has been defined which comprises the sequence tttCTATN(6)AtAGat/aA. Furthermore, the transcriptional organization of AmtR-regulated genes and operons was characterized.
Erscheinungsjahr
2005
Zeitschriftentitel
MOLECULAR MICROBIOLOGY
Band
58
Ausgabe
2
Seite(n)
580-595
ISSN
0950-382X
Page URI
https://pub.uni-bielefeld.de/record/1602146

Zitieren

Beckers G, Strosser J, Hildebrandt U, et al. Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY. 2005;58(2):580-595.
Beckers, G., Strosser, J., Hildebrandt, U., Kalinowski, J., Farwick, M., Kramer, R., & Burkovski, A. (2005). Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY, 58(2), 580-595. https://doi.org/10.1111/j.1365-2958.2005.04855.x
Beckers, G, Strosser, J, Hildebrandt, U, Kalinowski, Jörn, Farwick, M, Kramer, R, and Burkovski, A. 2005. “Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon”. MOLECULAR MICROBIOLOGY 58 (2): 580-595.
Beckers, G., Strosser, J., Hildebrandt, U., Kalinowski, J., Farwick, M., Kramer, R., and Burkovski, A. (2005). Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY 58, 580-595.
Beckers, G., et al., 2005. Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY, 58(2), p 580-595.
G. Beckers, et al., “Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon”, MOLECULAR MICROBIOLOGY, vol. 58, 2005, pp. 580-595.
Beckers, G., Strosser, J., Hildebrandt, U., Kalinowski, J., Farwick, M., Kramer, R., Burkovski, A.: Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon. MOLECULAR MICROBIOLOGY. 58, 580-595 (2005).
Beckers, G, Strosser, J, Hildebrandt, U, Kalinowski, Jörn, Farwick, M, Kramer, R, and Burkovski, A. “Regulation of AmtR-controlled gene expression in Corynebacterium glutamicum: mechanism and characterization of the AmtR regulon”. MOLECULAR MICROBIOLOGY 58.2 (2005): 580-595.

53 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

The NnaR orphan response regulator is essential for the utilization of nitrate and nitrite as sole nitrogen sources in mycobacteria.
Antczak M, Płocińska R, Płociński P, Rumijowska-Galewicz A, Żaczek A, Strapagiel D, Dziadek J., Sci Rep 8(1), 2018
PMID: 30510199
Differential NtcA Responsiveness to 2-Oxoglutarate Underlies the Diversity of C/N Balance Regulation in Prochlorococcus.
Domínguez-Martín MA, López-Lozano A, Clavería-Gimeno R, Velázquez-Campoy A, Seidel G, Burkovski A, Díez J, García-Fernández JM., Front Microbiol 8(), 2017
PMID: 29375510
Expression and purification of untagged GlnK proteins from actinobacteria.
Gerhardt ECM, Moure VR, Souza AW, Pedrosa FO, Souza EM, Diacovich L, Gramajo H, Huergo LF., EXCLI J 16(), 2017
PMID: 28900375
Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism.
Kamimura N, Takahashi K, Mori K, Araki T, Fujita M, Higuchi Y, Masai E., Environ Microbiol Rep 9(6), 2017
PMID: 29052962
Structure and Function of AmtR in Mycobacterium smegmatis: Implications for Post-Transcriptional Regulation of Urea Metabolism through a Small Antisense RNA.
Petridis M, Vickers C, Robson J, McKenzie JL, Bereza M, Sharrock A, Aung HL, Arcus VL, Cook GM., J Mol Biol 428(21), 2016
PMID: 27640309
Deciphering the metabolic response of Mycobacterium tuberculosis to nitrogen stress.
Williams KJ, Jenkins VA, Barton GR, Bryant WA, Krishnan N, Robertson BD., Mol Microbiol 97(6), 2015
PMID: 26077160
High-throughput screening of a Corynebacterium glutamicum mutant library on genomic and metabolic level.
Reimer LC, Spura J, Schmidt-Hohagen K, Schomburg D., PLoS One 9(2), 2014
PMID: 24504095
P(II) signal transduction proteins: nitrogen regulation and beyond.
Huergo LF, Chandra G, Merrick M., FEMS Microbiol Rev 37(2), 2013
PMID: 22861350
Role of nitrogen limitation in transformation of RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) by Gordonia sp. strain KTR9.
Indest KJ, Hancock DE, Jung CM, Eberly JO, Mohn WW, Eltis LD, Crocker FH., Appl Environ Microbiol 79(5), 2013
PMID: 23275513
Adenylylation of mycobacterial Glnk (PII) protein is induced by nitrogen limitation.
Williams KJ, Bennett MH, Barton GR, Jenkins VA, Robertson BD., Tuberculosis (Edinb) 93(2), 2013
PMID: 23352854
Genome wide analysis of the complete GlnR nitrogen-response regulon in Mycobacterium smegmatis.
Jenkins VA, Barton GR, Robertson BD, Williams KJ., BMC Genomics 14(), 2013
PMID: 23642041
The TetR family of regulators.
Cuthbertson L, Nodwell JR., Microbiol Mol Biol Rev 77(3), 2013
PMID: 24006471
Functional analysis of TetR-family regulator AmtRsav in Streptomyces avermitilis.
Chen Y, Zhu H, Zheng G, Jiang W, Lu Y., Microbiology 159(pt 12), 2013
PMID: 24068239
Nitrogen starvation-induced transcriptome alterations and influence of transcription regulator mutants in Mycobacterium smegmatis.
Jeßberger N, Lu Y, Amon J, Titgemeyer F, Sonnewald S, Reid S, Burkovski A., BMC Res Notes 6(), 2013
PMID: 24266988
Structural activation of the transcriptional repressor EthR from Mycobacterium tuberculosis by single amino acid change mimicking natural and synthetic ligands.
Carette X, Blondiaux N, Willery E, Hoos S, Lecat-Guillet N, Lens Z, Wohlkönig A, Wintjens R, Soror SH, Frénois F, Dirié B, Villeret V, England P, Lippens G, Deprez B, Locht C, Willand N, Baulard AR., Nucleic Acids Res 40(7), 2012
PMID: 22156370
An exclusive α/β code directs allostery in TetR-peptide complexes.
Sevvana M, Goetz C, Goeke D, Wimmer C, Berens C, Hillen W, Muller YA., J Mol Biol 416(1), 2012
PMID: 22178479
Short peptides act as inducers, anti-inducers and corepressors of Tet repressor.
Goeke D, Kaspar D, Stoeckle C, Grubmüller S, Berens C, Klotzsche M, Hillen W., J Mol Biol 416(1), 2012
PMID: 22178480
Analysis of sulfur-related transcription by Roseobacter communities using a taxon-specific functional gene microarray.
Rinta-Kanto JM, Bürgmann H, Gifford SM, Sun S, Sharma S, del Valle DA, Kiene RP, Moran MA., Environ Microbiol 13(2), 2011
PMID: 20880331
Proteomics of corynebacteria: From biotechnology workhorses to pathogens.
Poetsch A, Haussmann U, Burkovski A., Proteomics 11(15), 2011
PMID: 21674800
The Streptococcus mutans GlnR protein exhibits an increased affinity for the glnRA operon promoter when bound to GlnK.
Castellen P, Rego FG, Portugal ME, Benelli EM., Braz J Med Biol Res 44(12), 2011
PMID: 22011959
Common patterns - unique features: nitrogen metabolism and regulation in Gram-positive bacteria.
Amon J, Titgemeyer F, Burkovski A., FEMS Microbiol Rev 34(4), 2010
PMID: 20337720
L-Glutamine as a nitrogen source for Corynebacterium glutamicum: derepression of the AmtR regulon and implications for nitrogen sensing.
Rehm N, Georgi T, Hiery E, Degner U, Schmiedl A, Burkovski A, Bott M., Microbiology 156(pt 10), 2010
PMID: 20656783
A combination of metabolome and transcriptome analyses reveals new targets of the Corynebacterium glutamicum nitrogen regulator AmtR.
Buchinger S, Strösser J, Rehm N, Hänssler E, Hans S, Bathe B, Schomburg D, Krämer R, Burkovski A., J Biotechnol 140(1-2), 2009
PMID: 19041910
The roles of the nitrate reductase NarGHJI, the nitrite reductase NirBD and the response regulator GlnR in nitrate assimilation of Mycobacterium tuberculosis.
Malm S, Tiffert Y, Micklinghoff J, Schultze S, Joost I, Weber I, Horst S, Ackermann B, Schmidt M, Wohlleben W, Ehlers S, Geffers R, Reuther J, Bange FC., Microbiology 155(pt 4), 2009
PMID: 19332834
A game with many players: control of gdh transcription in Corynebacterium glutamicum.
Hänssler E, Müller T, Palumbo K, Patek M, Brocker M, Krämer R, Burkovski A., J Biotechnol 142(2), 2009
PMID: 19394370
DNA binding by Corynebacterium glutamicum TetR-type transcription regulator AmtR.
Muhl D, Jessberger N, Hasselt K, Jardin C, Sticht H, Burkovski A., BMC Mol Biol 10(), 2009
PMID: 19627583
NtrC-dependent regulatory network for nitrogen assimilation in Pseudomonas putida.
Hervás AB, Canosa I, Little R, Dixon R, Santero E., J Bacteriol 191(19), 2009
PMID: 19648236
P(II) signal transducers: novel functional and structural insights.
Forchhammer K., Trends Microbiol 16(2), 2008
PMID: 18182294
Functionally important residues of the Tet repressor inducing peptide TIP determined by a complete mutational analysis.
Daam J, Mehdaoui K, Klotzsche M, Pfleiderer K, Berens C, Hillen W., Gene 423(2), 2008
PMID: 18672042
Nitrogen control in Mycobacterium smegmatis: nitrogen-dependent expression of ammonium transport and assimilation proteins depends on the OmpR-type regulator GlnR.
Amon J, Bräu T, Grimrath A, Hänssler E, Hasselt K, Höller M, Jessberger N, Ott L, Szököl J, Titgemeyer F, Burkovski A., J Bacteriol 190(21), 2008
PMID: 18689485
Characterization of developmental colony formation in Corynebacterium glutamicum.
Takano H, Shimizu A, Shibosawa R, Sasaki R, Iwagaki S, Minagawa O, Yamanaka K, Miwa K, Beppu T, Ueda K., Appl Microbiol Biotechnol 81(1), 2008
PMID: 18696061
Nitrogen metabolism and nitrogen control in corynebacteria: variations of a common theme.
Walter B, Hänssler E, Kalinowski J, Burkovski A., J Mol Microbiol Biotechnol 12(1-2), 2007
PMID: 17183220
Nitrogen metabolism in Streptomyces coelicolor: transcriptional and post-translational regulation.
Reuther J, Wohlleben W., J Mol Microbiol Biotechnol 12(1-2), 2007
PMID: 17183221
Nitrogen regulation in bacteria and archaea.
Leigh JA, Dodsworth JA., Annu Rev Microbiol 61(), 2007
PMID: 17506680
Mutation-induced metabolite pool alterations in Corynebacterium glutamicum: towards the identification of nitrogen control signals.
Müller T, Strösser J, Buchinger S, Nolden L, Wirtz A, Krämer R, Burkovski A., J Biotechnol 126(4), 2006
PMID: 16822574

52 References

Daten bereitgestellt von Europe PubMed Central.

Taxonomical studies on glutamic acid-producing bacteria
Abe, J Gen Microbiol 13(), 1967
P(II) signal transduction proteins, pivotal players in microbial nitrogen control.
Arcondeguy T, Jack R, Merrick M., Microbiol. Mol. Biol. Rev. 65(1), 2001
PMID: 11238986

Ausubel, 1987
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon.
Baichoo N, Wang T, Ye R, Helmann JD., Mol. Microbiol. 45(6), 2002
PMID: 12354229
Towards a phosphoproteome map of Corynebacterium glutamicum.
Bendt AK, Burkovski A, Schaffer S, Bott M, Farwick M, Hermann T., Proteomics 3(8), 2003
PMID: 12923788
Utilization of creatinine as an alternative nitrogen source in Corynebacterium glutamicum.
Bendt AK, Beckers G, Silberbach M, Wittmann A, Burkovski A., Arch. Microbiol. 181(6), 2004
PMID: 15148566

Burkovski, 2005
Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB.
Coutts G, Thomas G, Blakey D, Merrick M., EMBO J. 21(4), 2002
PMID: 11847102
WebLogo: a sequence logo generator.
Crooks GE, Hon G, Chandonia JM, Brenner SE., Genome Res. 14(6), 2004
PMID: 15173120
The cell wall barrier of Corynebacterium glutamicum and amino acid efflux
Eggeling, J Biosci Bioeng 92(), 2001
Unique mechanistic features of post-translational regulation of glutamine synthetase activity in Methanosarcina mazei strain Gö1 in response to nitrogen availability
Ehlers, Mol Microbiol 54(), 2005
Nucleotide sequence, expression and transcriptional analysis of the Corynebacterium glutamicum gltA gene encoding citrate synthase.
Eikmanns BJ, Thum-Schmitz N, Eggeling L, Ludtke KU, Sahm H., Microbiology (Reading, Engl.) 140 ( Pt 8)(), 1994
PMID: 7522844
Mutations affecting nitrogenase switch-off in Rhodobacter capsulatus.
Hallenbeck PC., Biochim. Biophys. Acta 1118(2), 1992
PMID: 1730034
Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis.
Hashimoto JG, Beadles-Bohling AS, Wiren KM., BioTechniques 36(1), 2004
PMID: 14740484
Industrial production of amino acids by coryneform bacteria.
Hermann T., J. Biotechnol. 104(1-3), 2003
PMID: 12948636
Mapping and identification of Corynebacterium glutamicum proteins by two-dimensional gel electrophoresis and microsequencing.
Hermann T, Wersch G, Uhlemann EM, Schmid R, Burkovski A., Electrophoresis 19(18), 1998
PMID: 9932818
Two-dimensional electrophoretic analysis of Corynebacterium glutamicum membrane fraction and surface proteins.
Hermann T, Finkemeier M, Pfefferle W, Wersch G, Kramer R, Burkovski A., Electrophoresis 21(3), 2000
PMID: 10726773
Proteome analysis of Corynebacterium glutamicum.
Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Puhler A, Bendt AK, Kramer R, Burkovski A., Electrophoresis 22(9), 2001
PMID: 11425227
AmtR, a global repressor in the nitrogen regulation system of Corynebacterium glutamicum.
Jakoby M, Nolden L, Meier-Wagner J, Kramer R, Burkovski A., Mol. Microbiol. 37(4), 2000
PMID: 10972815
Ammonium sensing in Escherichia coli. Role of the ammonium transporter AmtB and AmtB-GlnK complex formation.
Javelle A, Severi E, Thornton J, Merrick M., J. Biol. Chem. 279(10), 2003
PMID: 14668330
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626
Amino acid fermentation. I. Production of L-glutamic acid by various microorganisms
Kinoshita, J Gen Appl Microbiol 3(), 1957

Leuchtenberger, 1996
Vanillate metabolism in Corynebacterium glutamicum.
Merkens H, Beckers G, Wirtz A, Burkovski A., Curr. Microbiol. 51(1), 2005
PMID: 15971090
Urease of Corynebacterium glutamicum: organization of corresponding genes and investigation of activity.
Nolden L, Beckers G, Mockel B, Pfefferle W, Nampoothiri KM, Kramera R, Burkovskia A., FEMS Microbiol. Lett. 189(2), 2000
PMID: 10930756
Glutamine synthetases of Corynebacterium glutamicum: transcriptional control and regulation of activity.
Nolden L, Farwick M, Kramer R, Burkovski A., FEMS Microbiol. Lett. 201(1), 2001
PMID: 11445173
Sensing nitrogen limitation in Corynebacterium glutamicum: the role of glnK and glnD.
Nolden L, Ngouoto-Nkili CE, Bendt AK, Kramer R, Burkovski A., Mol. Microbiol. 42(5), 2001
PMID: 11886559
Yeast two-hybrid studies on interaction of proteins involved in regulation of nitrogen fixation in the phototrophic bacterium Rhodobacter capsulatus.
Pawlowski A, Riedel KU, Klipp W, Dreiskemper P, Gross S, Bierhoff H, Drepper T, Masepohl B., J. Bacteriol. 185(17), 2003
PMID: 12923097

Sambrook, 1989
Screening method for microorganisms accumulating metabolites and its use in the isolation of Micrococcus glutamicus
Udaka, J Bacteriol 79(), 1960
Identification of additional TnrA-regulated genes of Bacillus subtilis associated with a TnrA box.
Yoshida K, Yamaguchi H, Kinehara M, Ohki YH, Nakaura Y, Fujita Y., Mol. Microbiol. 49(1), 2003
PMID: 12823818
Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation.
Zimmer DP, Soupene E, Lee HL, Wendisch VF, Khodursky AB, Peter BJ, Bender RA, Kustu S., Proc. Natl. Acad. Sci. U.S.A. 97(26), 2000
PMID: 11121068
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