Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.

Landwehr W, Kaempfer P, Glaeser SP, Rückert C, Kalinowski J, Blom J, Goesmann A, Mack M, Schumann P, Atasayar E, Hahnke RL, et al. (2018)
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68(1): 382-393.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Landwehr, Wiebke; Kaempfer, Peter; Glaeser, Stefanie P.; Rückert, ChristianUniBi ; Kalinowski, JörnUniBi; Blom, Jochen; Goesmann, Alexander; Mack, Matthias; Schumann, Peter; Atasayar, Ewelina; Hahnke, Richard L.; Rohde, Manfred
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Abstract / Bemerkung
Roseoflavin is the only known riboflavin (vitamin B2) analog with antibiotic properties. It is actively taken up by many microorganisms and targets flavinmononucleotide riboswitches and flavoproteins. It is described as the product of the tentatively named 'Streptomyces davawensis' JCM 4913. Taxonomic analysis of this strain with a polyphasic approach showed that it is very closely related to Streptomyces cinnabarinus (DSM 40467). The two Streptomyces isolates were obtained from different geographical locations (the Philippines and the Kamchatka Peninsula, respectively), their genomes have been sequenced and the question was whether or not the two isolates were representatives of the same species. As we also worked with another isolate of Streptomyces cinnabarinus JS 360, the producer of the cinnabaramides, we wanted to clarify the taxonomic position of the three isolates by using a polyphasic approach. After analysis of the 16S rRNA gene sequence, we found in total 23 species of the genus Streptomyces that showed a similarity higher than 98.5% to the three strains. We showed that 'S. davawensis' JCM 4913 and S. cinnabarinus DSM 40467 were very closely related but belong to two different species. Hence, we validate 'S. davawensis' as Streptomyces davaonensis sp. nov. with the type strain JCM 4913(T) (=DSM 101723(T)). In addition, the cinnabaramide producer can be clearly differentiated from S. davaonensis and this isolate is described as Streptomyces cinnabarigriseus sp. nov. with strain JS360(T) (=NCCB 100590(T) = DSM 101724(T)) as the type strain.
Stichworte
Streptomyces cinnabarinus cluster; Streptomyces cinnabarigriseus; Streptomyces davaonensis; polyphasic taxonomy
Erscheinungsjahr
2018
Zeitschriftentitel
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Band
68
Ausgabe
1
Seite(n)
382-393
ISSN
1466-5026
eISSN
1466-5034
Page URI
https://pub.uni-bielefeld.de/record/2918674

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Landwehr W, Kaempfer P, Glaeser SP, et al. Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2018;68(1):382-393.
Landwehr, W., Kaempfer, P., Glaeser, S. P., Rückert, C., Kalinowski, J., Blom, J., Goesmann, A., et al. (2018). Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 68(1), 382-393. doi:10.1099/ijsem.0.002519
Landwehr, Wiebke, Kaempfer, Peter, Glaeser, Stefanie P., Rückert, Christian, Kalinowski, Jörn, Blom, Jochen, Goesmann, Alexander, et al. 2018. “Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.”. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68 (1): 382-393.
Landwehr, W., Kaempfer, P., Glaeser, S. P., Rückert, C., Kalinowski, J., Blom, J., Goesmann, A., Mack, M., Schumann, P., Atasayar, E., et al. (2018). Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68, 382-393.
Landwehr, W., et al., 2018. Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 68(1), p 382-393.
W. Landwehr, et al., “Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.”, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol. 68, 2018, pp. 382-393.
Landwehr, W., Kaempfer, P., Glaeser, S.P., Rückert, C., Kalinowski, J., Blom, J., Goesmann, A., Mack, M., Schumann, P., Atasayar, E., Hahnke, R.L., Rohde, M., Martin, K., Stadler, M., Wink, J.: Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 68, 382-393 (2018).
Landwehr, Wiebke, Kaempfer, Peter, Glaeser, Stefanie P., Rückert, Christian, Kalinowski, Jörn, Blom, Jochen, Goesmann, Alexander, Mack, Matthias, Schumann, Peter, Atasayar, Ewelina, Hahnke, Richard L., Rohde, Manfred, Martin, Karin, Stadler, Marc, and Wink, Joachim. “Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp nov and Streptomyces davaonensis sp nov.”. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 68.1 (2018): 382-393.

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57 References

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AUTHOR UNKNOWN, 0
Streptomyces davawensis nov. sp
Shinobu, Memoirs Osaka Kyoiku Univ 23(), 1974
Riboflavin analogs as antiinfectives: occurrence, mode of action, metabolism and resistance.
Pedrolli DB, Jankowitsch F, Schwarz J, Langer S, Nakanishi S, Frei E, Mack M., Curr. Pharm. Des. 19(14), 2013
PMID: 23116394
Characterization of riboflavin (vitamin B2) transport proteins from Bacillus subtilis and Corynebacterium glutamicum.
Vogl C, Grill S, Schilling O, Stulke J, Mack M, Stolz J., J. Bacteriol. 189(20), 2007
PMID: 17693491
The antibiotics roseoflavin and 8-demethyl-8-amino-riboflavin from Streptomyces davawensis are metabolized by human flavokinase and human FAD synthetase.
Pedrolli DB, Nakanishi S, Barile M, Mansurova M, Carmona EC, Lux A, Gartner W, Mack M., Biochem. Pharmacol. 82(12), 2011
PMID: 21924249
Flavoproteins are potential targets for the antibiotic roseoflavin in Escherichia coli.
Langer S, Hashimoto M, Hobl B, Mathes T, Mack M., J. Bacteriol. 195(18), 2013
PMID: 23836860
The flavoenzyme azobenzene reductase AzoR from Escherichia coli binds roseoflavin mononucleotide (RoFMN) with high affinity and is less active in its RoFMN form.
Langer S, Nakanishi S, Mathes T, Knaus T, Binter A, Macheroux P, Mase T, Miyakawa T, Tanokura M, Mack M., Biochemistry 52(25), 2013
PMID: 23713585
A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis.
Pedrolli DB, Matern A, Wang J, Ester M, Siedler K, Breaker R, Mack M., Nucleic Acids Res. 40(17), 2012
PMID: 22740651
Bacterial flavin mononucleotide riboswitches as targets for flavin analogs.
Pedrolli DB, Mack M., Methods Mol. Biol. 1103(), 2014
PMID: 24318894
Identification of the Key Enzyme of Roseoflavin Biosynthesis.
Schwarz J, Konjik V, Jankowitsch F, Sandhoff R, Mack M., Angew. Chem. Int. Ed. Engl. 55(20), 2016
PMID: 27062037
A Remarkable Oxidative Cascade That Replaces the Riboflavin C8 Methyl with an Amino Group during Roseoflavin Biosynthesis.
Jhulki I, Chanani PK, Abdelwahed SH, Begley TP., J. Am. Chem. Soc. 138(27), 2016
PMID: 27331868
The Crystal Structure of RosB: Insights into the Reaction Mechanism of the First Member of a Family of Flavodoxin-like Enzymes.
Konjik V, Brunle S, Demmer U, Vanselow A, Sandhoff R, Ermler U, Mack M., Angew. Chem. Int. Ed. Engl. 56(4), 2016
PMID: 27981706
A novel N,N-8-amino-8-demethyl-D-riboflavin Dimethyltransferase (RosA) catalyzing the two terminal steps of roseoflavin biosynthesis in Streptomyces davawensis.
Jankowitsch F, Kuhm C, Kellner R, Kalinowski J, Pelzer S, Macheroux P, Mack M., J. Biol. Chem. 286(44), 2011
PMID: 21911488
Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Jankowitsch F, Schwarz J, Ruckert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M., J. Bacteriol. 194(24), 2012
PMID: 23043000

Stadler, 0
Cinnabaramides A-G: analogues of lactacystin and salinosporamide from a terrestrial streptomycete.
Stadler M, Bitzer J, Mayer-Bartschmid A, Muller H, Benet-Buchholz J, Gantner F, Tichy HV, Reinemer P, Bacon KB., J. Nat. Prod. 70(2), 2007
PMID: 17249727
Multiple myeloma.
Kyle RA, Rajkumar SV., N. Engl. J. Med. 351(18), 2004
PMID: 15509819
Unusual carbon fixation gives rise to diverse polyketide extender units.
Quade N, Huo L, Rachid S, Heinz DW, Muller R., Nat. Chem. Biol. 8(1), 2011
PMID: 22138621

AUTHOR UNKNOWN, 0

Wink, 2002
Methoden zur Untersuchung von Streptomyceten und einigen anderen Actinomyceten. 4
Kutzner, Auflage (), 1986
API ZYM: a simple rapid system for the detection of bacterial enzymes.
Humble MW, King A, Phillips I., J. Clin. Pathol. 30(3), 1977
PMID: 845275
Polyphasic taxonomy and antibiotic formation in some closely related genera of the family Pseudonocardiaceae
Wink, 2003
[Phage sensitivity, cell wall composition and taxonomy of actinomyctes]
Prauser H, Falta R., Z. Allg. Mikrobiol. 8(1), 1968
PMID: 5700542
Distribution of menaquinones in actinomycetes and corynebacteria.
Collins MD, Pirouz T, Goodfellow M, Minnikin DE., J. Gen. Microbiol. 100(2), 1977
PMID: 894261

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

Sasser, 1990
16S/23S rRNA Sequencing
Lane, 1991
ARB: a software environment for sequence data.
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH., Nucleic Acids Res. 32(4), 2004
PMID: 14985472
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glockner FO, Rossello-Mora R., Syst. Appl. Microbiol. 31(4), 2008
PMID: 18692976
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
Pruesse E, Peplies J, Glockner FO., Bioinformatics 28(14), 2012
PMID: 22556368
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
Brosius J, Dull TJ, Sleeter DD, Noller HF., J. Mol. Biol. 148(2), 1981
PMID: 7028991
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM., Int. J. Syst. Evol. Microbiol. 57(Pt 1), 2007
PMID: 17220447
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Multi-locus sequence analysis: taking prokaryoticsystematics to the next level
Rong, 2014
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Kumar S, Stecher G, Tamura K., Mol. Biol. Evol. 33(7), 2016
PMID: 27004904

Nei, 2000

AUTHOR UNKNOWN, 0
MALDI-TOF mass spectrometry applied to classification and identification of bacteria
Schumann, Methods Microbiol 41(), 2014
Genomic insights that advance the species definition for prokaryotes.
Konstantinidis KT, Tiedje JM., Proc. Natl. Acad. Sci. U.S.A. 102(7), 2005
PMID: 15701695
The bacterial species definition in the genomic era.
Konstantinidis KT, Ramette A, Tiedje JM., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 361(1475), 2006
PMID: 17062412
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