Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10
Schneider O, Ilic-Tomic T, Rückert C, Kalinowski J, Gencic MS, Zivkovic MZ, Stankovic N, Radulovic NS, Vasiljevic B, Nikodinovic-Runic J, Zotchev SB (2018)
FRONTIERS IN MICROBIOLOGY 9: 10.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Schneider, Olha;
Ilic-Tomic, Tatjana;
Rückert, ChristianUniBi ;
Kalinowski, JörnUniBi;
Gencic, Marija S.;
Zivkovic, Milena Z.;
Stankovic, Nada;
Radulovic, Niko S.;
Vasiljevic, Branka;
Nikodinovic-Runic, Jasmina;
Zotchev, Sergey B.
Einrichtung
Abstract / Bemerkung
Streptomyces sp. NP10 was previously shown to synthesize large amounts of free fatty acids (FFAs). In this work, we report the first insights into the biosynthesis of these fatty acids (FAs) gained after genome sequencing and identification of the genes involved. Analysis of the Streptomyces sp. NP10 draft genome revealed that it is closely related to several strains of Streptomyces griseus. Comparative analyses of secondary metabolite biosynthetic gene clusters, as well as those presumably involved in FA biosynthesis, allowed identification of an unusual cluster C12-2, which could be identified in only one other S. griseus-related streptomycete. To prove the involvement of identified cluster in FFA biosynthesis, one of its three ketosynthase genes was insertionally inactivated to generate mutant strain mNP10. Accumulation of FFAs in mNP10 was almost completely abolished, reaching less than 0.01% compared to the wild-type strain. Cloning and transfer of the C12-2 cluster to the mNP10 mutant partially restored FFA production, albeit to a low level. The discovery of this rare FFA biosynthesis cluster opens possibilities for detailed characterization of the roles of individual genes and their products in the biosynthesis of FFAs in NP10.
Stichworte
Streptomyces;
fatty acid biosynthesis;
genome sequence;
biosynthetic;
gene clusters;
insertional inactivation
Erscheinungsjahr
2018
Zeitschriftentitel
FRONTIERS IN MICROBIOLOGY
Band
9
Art.-Nr.
10
Urheberrecht / Lizenzen
ISSN
1664-302X
Page URI
https://pub.uni-bielefeld.de/record/2921229
Zitieren
Schneider O, Ilic-Tomic T, Rückert C, et al. Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY. 2018;9: 10.
Schneider, O., Ilic-Tomic, T., Rückert, C., Kalinowski, J., Gencic, M. S., Zivkovic, M. Z., Stankovic, N., et al. (2018). Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY, 9, 10. doi:10.3389/fmicb.2018.01302
Schneider, Olha, Ilic-Tomic, Tatjana, Rückert, Christian, Kalinowski, Jörn, Gencic, Marija S., Zivkovic, Milena Z., Stankovic, Nada, et al. 2018. “Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10”. FRONTIERS IN MICROBIOLOGY 9: 10.
Schneider, O., Ilic-Tomic, T., Rückert, C., Kalinowski, J., Gencic, M. S., Zivkovic, M. Z., Stankovic, N., Radulovic, N. S., Vasiljevic, B., Nikodinovic-Runic, J., et al. (2018). Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY 9:10.
Schneider, O., et al., 2018. Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY, 9: 10.
O. Schneider, et al., “Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10”, FRONTIERS IN MICROBIOLOGY, vol. 9, 2018, : 10.
Schneider, O., Ilic-Tomic, T., Rückert, C., Kalinowski, J., Gencic, M.S., Zivkovic, M.Z., Stankovic, N., Radulovic, N.S., Vasiljevic, B., Nikodinovic-Runic, J., Zotchev, S.B.: Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10. FRONTIERS IN MICROBIOLOGY. 9, : 10 (2018).
Schneider, Olha, Ilic-Tomic, Tatjana, Rückert, Christian, Kalinowski, Jörn, Gencic, Marija S., Zivkovic, Milena Z., Stankovic, Nada, Radulovic, Niko S., Vasiljevic, Branka, Nikodinovic-Runic, Jasmina, and Zotchev, Sergey B. “Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp NP10”. FRONTIERS IN MICROBIOLOGY 9 (2018): 10.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
0 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
30 References
Daten bereitgestellt von Europe PubMed Central.
Fatty acid biosynthesis in actinomycetes.
Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H., FEMS Microbiol. Rev. 35(3), 2011
PMID: 21204864
Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H., FEMS Microbiol. Rev. 35(3), 2011
PMID: 21204864
Gifted microbes for genome mining and natural product discovery.
Baltz RH., J. Ind. Microbiol. Biotechnol. 44(4-5), 2016
PMID: 27520548
Baltz RH., J. Ind. Microbiol. Biotechnol. 44(4-5), 2016
PMID: 27520548
Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp.
Bierman M, Logan R, O'Brien K, Seno ET, Rao RN, Schoner BE., Gene 116(1), 1992
PMID: 1628843
Bierman M, Logan R, O'Brien K, Seno ET, Rao RN, Schoner BE., Gene 116(1), 1992
PMID: 1628843
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters.
Blin K, Medema MH, Kottmann R, Lee SY, Weber T., Nucleic Acids Res. 45(D1), 2016
PMID: 27924032
Blin K, Medema MH, Kottmann R, Lee SY, Weber T., Nucleic Acids Res. 45(D1), 2016
PMID: 27924032
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.
Blin K, Wolf T, Chevrette MG, Lu X, Schwalen CJ, Kautsar SA, Suarez Duran HG, de Los Santos ELC, Kim HU, Nave M, Dickschat JS, Mitchell DA, Shelest E, Breitling R, Takano E, Lee SY, Weber T, Medema MH., Nucleic Acids Res. 45(W1), 2017
PMID: 28460038
Blin K, Wolf T, Chevrette MG, Lu X, Schwalen CJ, Kautsar SA, Suarez Duran HG, de Los Santos ELC, Kim HU, Nave M, Dickschat JS, Mitchell DA, Shelest E, Breitling R, Takano E, Lee SY, Weber T, Medema MH., Nucleic Acids Res. 45(W1), 2017
PMID: 28460038
High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes.
Flett F, Mersinias V, Smith CP., FEMS Microbiol. Lett. 155(2), 1997
PMID: 9351205
Flett F, Mersinias V, Smith CP., FEMS Microbiol. Lett. 155(2), 1997
PMID: 9351205
Fatty acid biosynthesis in actinomycetes.
Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H., FEMS Microbiol. Rev. 35(3), 2011
PMID: 21204864
Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H., FEMS Microbiol. Rev. 35(3), 2011
PMID: 21204864
Consed: a graphical editor for next-generation sequencing.
Gordon D, Green P., Bioinformatics 29(22), 2013
PMID: 23995391
Gordon D, Green P., Bioinformatics 29(22), 2013
PMID: 23995391
Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.
Grubbs KJ, Biedermann PH, Suen G, Adams SM, Moeller JA, Klassen JL, Goodwin LA, Woyke T, Munk AC, Bruce D, Detter C, Tapia R, Han CS, Currie CR., J. Bacteriol. 193(11), 2011
PMID: 21460079
Grubbs KJ, Biedermann PH, Suen G, Adams SM, Moeller JA, Klassen JL, Goodwin LA, Woyke T, Munk AC, Bruce D, Detter C, Tapia R, Han CS, Currie CR., J. Bacteriol. 193(11), 2011
PMID: 21460079
The Gene bldA, a regulator of morphological differentiation and antibiotic production in streptomyces.
Hackl S, Bechthold A., Arch. Pharm. (Weinheim) 348(7), 2015
PMID: 25917027
Hackl S, Bechthold A., Arch. Pharm. (Weinheim) 348(7), 2015
PMID: 25917027
Characterization of beta-ketoacyl-acyl carrier protein synthase III from Streptomyces glaucescens and its role in initiation of fatty acid biosynthesis.
Han L, Lobo S, Reynolds KA., J. Bacteriol. 180(17), 1998
PMID: 9721286
Han L, Lobo S, Reynolds KA., J. Bacteriol. 180(17), 1998
PMID: 9721286
Application and engineering of fatty acid biosynthesis in Escherichia coli for advanced fuels and chemicals.
Handke P, Lynch SA, Gill RT., Metab. Eng. 13(1), 2010
PMID: 21056114
Handke P, Lynch SA, Gill RT., Metab. Eng. 13(1), 2010
PMID: 21056114
Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico.
Hopwood DA., Microbiology (Reading, Engl.) 145 ( Pt 9)(), 1999
PMID: 10517572
Hopwood DA., Microbiology (Reading, Engl.) 145 ( Pt 9)(), 1999
PMID: 10517572
Structural diversity and possible functional roles of free fatty acids of the novel soil isolate Streptomyces sp. NP10.
Ilic-Tomic T, Gencic MS, Zivkovic MZ, Vasiljevic B, Djokic L, Nikodinovic-Runic J, Radulovic NS., Appl. Microbiol. Biotechnol. 99(11), 2015
PMID: 25636833
Ilic-Tomic T, Gencic MS, Zivkovic MZ, Vasiljevic B, Djokic L, Nikodinovic-Runic J, Radulovic NS., Appl. Microbiol. Biotechnol. 99(11), 2015
PMID: 25636833
Biosynthesis of gamma-butyrolactone autoregulators that switch on secondary metabolism and morphological development in Streptomyces.
Kato JY, Funa N, Watanabe H, Ohnishi Y, Horinouchi S., Proc. Natl. Acad. Sci. U.S.A. 104(7), 2007
PMID: 17277085
Kato JY, Funa N, Watanabe H, Ohnishi Y, Horinouchi S., Proc. Natl. Acad. Sci. U.S.A. 104(7), 2007
PMID: 17277085
New approaches to antibiotic discovery.
Kealey C, Creaven CA, Murphy CD, Brady CB., Biotechnol. Lett. 39(6), 2017
PMID: 28275884
Kealey C, Creaven CA, Murphy CD, Brady CB., Biotechnol. Lett. 39(6), 2017
PMID: 28275884
Kieser T., Bibb M., Buttner M., Chater K., Hopwood D.., 2000
Analysis of the mycosamine biosynthesis and attachment genes in the nystatin biosynthetic gene cluster of Streptomyces noursei ATCC 11455.
Nedal A, Sletta H, Brautaset T, Borgos SE, Sekurova ON, Ellingsen TE, Zotchev SB., Appl. Environ. Microbiol. 73(22), 2007
PMID: 17905880
Nedal A, Sletta H, Brautaset T, Borgos SE, Sekurova ON, Ellingsen TE, Zotchev SB., Appl. Environ. Microbiol. 73(22), 2007
PMID: 17905880
Beta-ketoacyl acyl carrier protein synthase III (FabH) is essential for fatty acid biosynthesis in Streptomyces coelicolor A3(2).
Revill WP, Bibb MJ, Scheu AK, Kieser HJ, Hopwood DA., J. Bacteriol. 183(11), 2001
PMID: 11344162
Revill WP, Bibb MJ, Scheu AK, Kieser HJ, Hopwood DA., J. Bacteriol. 183(11), 2001
PMID: 11344162
Sambrook J., Fritsch E., Maniatis T.., 1989
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge.
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Ruckert C., Stand Genomic Sci 11(), 2016
PMID: 28031775
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Ruckert C., Stand Genomic Sci 11(), 2016
PMID: 28031775
Activation of chloramphenicol biosynthesis in Streptomyces venezuelae ATCC 10712 by ethanol shock: insights from the promoter fusion studies.
Sekurova ON, Zhang J, Kristiansen KA, Zotchev SB., Microb. Cell Fact. 15(), 2016
PMID: 27206520
Sekurova ON, Zhang J, Kristiansen KA, Zotchev SB., Microb. Cell Fact. 15(), 2016
PMID: 27206520
Identification and Characterization of FabA from the Type II Fatty Acid Synthase of Streptomyces coelicolor.
Singh R, Reynolds KA., J. Nat. Prod. 79(1), 2016
PMID: 26731437
Singh R, Reynolds KA., J. Nat. Prod. 79(1), 2016
PMID: 26731437
Development of a Biosensor Concept to Detect the Production of Cluster-Specific Secondary Metabolites.
Sun YQ, Busche T, Ruckert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB., ACS Synth Biol 6(6), 2017
PMID: 28221784
Sun YQ, Busche T, Ruckert C, Paulus C, Rebets Y, Novakova R, Kalinowski J, Luzhetskyy A, Kormanec J, Sekurova ON, Zotchev SB., ACS Synth Biol 6(6), 2017
PMID: 28221784
Chemical ecology of antibiotic production by actinomycetes.
van der Meij A, Worsley SF, Hutchings MI, van Wezel GP., FEMS Microbiol. Rev. 41(3), 2017
PMID: 28521336
van der Meij A, Worsley SF, Hutchings MI, van Wezel GP., FEMS Microbiol. Rev. 41(3), 2017
PMID: 28521336
Draft Genome Sequence of the Anti-Algal Marine Actinomycete Streptomyces sp. JS01.
Zhang H, Zhang S, Peng Y, Li Y, Chen Z, Zheng W, Xu H, Yu Z, Zheng T., Genome Announc 2(6), 2014
PMID: 25477414
Zhang H, Zhang S, Peng Y, Li Y, Chen Z, Zheng W, Xu H, Yu Z, Zheng T., Genome Announc 2(6), 2014
PMID: 25477414
Methyl-branched fatty acids, inhibitors of enoyl-ACP reductase with antibacterial activity from Streptomyces sp. A251.
Zheng CJ, Sohn MJ, Chi SW, Kim WG., J. Microbiol. Biotechnol. 20(5), 2010
PMID: 20519910
Zheng CJ, Sohn MJ, Chi SW, Kim WG., J. Microbiol. Biotechnol. 20(5), 2010
PMID: 20519910
Identification of a gene cluster for antibacterial polyketide-derived antibiotic biosynthesis in the nystatin producer Streptomyces noursei ATCC 11455.
Zotchev S, Haugan K, Sekurova O, Sletta H, Ellingsen TE, Valla S., Microbiology (Reading, Engl.) 146 ( Pt 3)(), 2000
PMID: 10746764
Zotchev S, Haugan K, Sekurova O, Sletta H, Ellingsen TE, Valla S., Microbiology (Reading, Engl.) 146 ( Pt 3)(), 2000
PMID: 10746764
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 29971051
PubMed | Europe PMC
Suchen in