EMMA: a platform for consistent storage and efficient analysis of microarray data
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Dondrup, M.;
Goesmann, AlexanderUniBi 
;
Bartels, D.;
Kalinowski, JörnUniBi;
Krause, L.;
Linke, BurkhardUniBi;
Rupp, O.;
Sczyrba, AlexanderUniBi ;
Pühler, AlfredUniBi ;
Meyer, F.
;
Bartels, D.;
Kalinowski, JörnUniBi;
Krause, L.;
Linke, BurkhardUniBi;
Rupp, O.;
Sczyrba, AlexanderUniBi ;
Pühler, AlfredUniBi ;
Meyer, F.Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Fakultät für Biologie
Technische Fakultät > Computational Metagenomics
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Fakultät für Biologie
Technische Fakultät > Computational Metagenomics
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Abstract / Bemerkung
As a high throughput technique, microarray experiments produce large data sets, consisting of measured data, laboratory protocols, and experimental settings. We have implemented the open source platform EMMA to store and analyze these data. The system provides automated pipelines for data processing and has a modular architecture that can be easily extended. EMMA features detailed reports about spots and their corresponding measurements. In addition to routine data analysis algorithms, the system can be integrated with other components that contain additional data sources (e.g. genome annotation systems). (C) 2003 Elsevier B.V. All rights reserved.
Stichworte
transcriptomics;
microarrays;
gene expression analysis;
data integration
Erscheinungsjahr
2003
Zeitschriftentitel
JOURNAL OF BIOTECHNOLOGY
Band
106
Ausgabe
2-3
Seite(n)
135-146
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/1609260
Zitieren
Dondrup M, Goesmann A, Bartels D, et al. EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY. 2003;106(2-3):135-146.
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., et al. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 135-146. https://doi.org/10.1016/j.jbiotec.2003.08.010
Dondrup, M., Goesmann, Alexander, Bartels, D., Kalinowski, Jörn, Krause, L., Linke, Burkhard, Rupp, O., Sczyrba, Alexander, Pühler, Alfred, and Meyer, F. 2003. “EMMA: a platform for consistent storage and efficient analysis of microarray data”. JOURNAL OF BIOTECHNOLOGY 106 (2-3): 135-146.
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., and Meyer, F. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106, 135-146.
Dondrup, M., et al., 2003. EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY, 106(2-3), p 135-146.
M. Dondrup, et al., “EMMA: a platform for consistent storage and efficient analysis of microarray data”, JOURNAL OF BIOTECHNOLOGY, vol. 106, 2003, pp. 135-146.
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., Meyer, F.: EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY. 106, 135-146 (2003).
Dondrup, M., Goesmann, Alexander, Bartels, D., Kalinowski, Jörn, Krause, L., Linke, Burkhard, Rupp, O., Sczyrba, Alexander, Pühler, Alfred, and Meyer, F. “EMMA: a platform for consistent storage and efficient analysis of microarray data”. JOURNAL OF BIOTECHNOLOGY 106.2-3 (2003): 135-146.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
76 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Isoprenoid Pyrophosphate-Dependent Transcriptional Regulation of Carotenogenesis in Corynebacterium glutamicum.
Henke NA, Heider SAE, Hannibal S, Wendisch VF, Peters-Wendisch P., Front Microbiol 8(), 2017
PMID: 28484430
Henke NA, Heider SAE, Hannibal S, Wendisch VF, Peters-Wendisch P., Front Microbiol 8(), 2017
PMID: 28484430
Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris.
Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ., Microbiology 163(8), 2017
PMID: 28795660
Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ., Microbiology 163(8), 2017
PMID: 28795660
Divergent genes in potential inoculant Sinorhizobium strains are related to DNA replication, recombination, and repair.
Penttinen P, Greco D, Muntyan V, Terefework Z, De Lajudie P, Roumiantseva M, Becker A, Auvinen P, Lindström K., J Basic Microbiol 56(6), 2016
PMID: 26879331
Penttinen P, Greco D, Muntyan V, Terefework Z, De Lajudie P, Roumiantseva M, Becker A, Auvinen P, Lindström K., J Basic Microbiol 56(6), 2016
PMID: 26879331
A consolidated analysis of the physiologic and molecular responses induced under acid stress in the legume-symbiont model-soil bacterium Sinorhizobium meliloti.
Draghi WO, Del Papa MF, Hellweg C, Watt SA, Watt TF, Barsch A, Lozano MJ, Lagares A, Salas ME, López JL, Albicoro FJ, Nilsson JF, Torres Tejerizo GA, Luna MF, Pistorio M, Boiardi JL, Pühler A, Weidner S, Niehaus K, Lagares A., Sci Rep 6(), 2016
PMID: 27404346
Draghi WO, Del Papa MF, Hellweg C, Watt SA, Watt TF, Barsch A, Lozano MJ, Lagares A, Salas ME, López JL, Albicoro FJ, Nilsson JF, Torres Tejerizo GA, Luna MF, Pistorio M, Boiardi JL, Pühler A, Weidner S, Niehaus K, Lagares A., Sci Rep 6(), 2016
PMID: 27404346
Unraveling the effect of arsenic on the model Medicago-Ensifer interaction: a transcriptomic meta-analysis.
Lafuente A, Pérez-Palacios P, Doukkali B, Molina-Sánchez MD, Jiménez-Zurdo JI, Caviedes MA, Rodríguez-Llorente ID, Pajuelo E., New Phytol 205(1), 2015
PMID: 25252248
Lafuente A, Pérez-Palacios P, Doukkali B, Molina-Sánchez MD, Jiménez-Zurdo JI, Caviedes MA, Rodríguez-Llorente ID, Pajuelo E., New Phytol 205(1), 2015
PMID: 25252248
Production of the sesquiterpene (+)-valencene by metabolically engineered Corynebacterium glutamicum.
Frohwitter J, Heider SA, Peters-Wendisch P, Beekwilder J, Wendisch VF., J Biotechnol 191(), 2014
PMID: 24910970
Frohwitter J, Heider SA, Peters-Wendisch P, Beekwilder J, Wendisch VF., J Biotechnol 191(), 2014
PMID: 24910970
Conjugal transfer of the Sinorhizobium meliloti 1021 symbiotic plasmid is governed through the concerted action of one- and two-component signal transduction regulators.
Nogales J, Blanca-Ordóñez H, Olivares J, Sanjuán J., Environ Microbiol 15(3), 2013
PMID: 23336126
Nogales J, Blanca-Ordóñez H, Olivares J, Sanjuán J., Environ Microbiol 15(3), 2013
PMID: 23336126
Linking plant nutritional status to plant-microbe interactions.
Carvalhais LC, Dennis PG, Fan B, Fedoseyenko D, Kierul K, Becker A, von Wiren N, Borriss R., PLoS One 8(7), 2013
PMID: 23874669
Carvalhais LC, Dennis PG, Fan B, Fedoseyenko D, Kierul K, Becker A, von Wiren N, Borriss R., PLoS One 8(7), 2013
PMID: 23874669
The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti.
Pini F, Frage B, Ferri L, De Nisco NJ, Mohapatra SS, Taddei L, Fioravanti A, Dewitte F, Galardini M, Brilli M, Villeret V, Bazzicalupo M, Mengoni A, Walker GC, Becker A, Biondi EG., Mol Microbiol 90(1), 2013
PMID: 23909720
Pini F, Frage B, Ferri L, De Nisco NJ, Mohapatra SS, Taddei L, Fioravanti A, Dewitte F, Galardini M, Brilli M, Villeret V, Bazzicalupo M, Mengoni A, Walker GC, Becker A, Biondi EG., Mol Microbiol 90(1), 2013
PMID: 23909720
Gene expression profiles of seed coats and biochemical properties of seed coats and cotyledons of two field pea (Pisum sativum) cultivars contrasting in green cotyledon bleaching resistance
Ubayasena L, Vijayan P, Bett KE, Gray GR, Küster H, Warkentin TD., Euphytica 193(1), 2013
PMID: IND500685463
Ubayasena L, Vijayan P, Bett KE, Gray GR, Küster H, Warkentin TD., Euphytica 193(1), 2013
PMID: IND500685463
Arabitol metabolism of Corynebacterium glutamicum and its regulation by AtlR.
Laslo T, von Zaluskowski P, Gabris C, Lodd E, Rückert C, Dangel P, Kalinowski J, Auchter M, Seibold G, Eikmanns BJ., J Bacteriol 194(5), 2012
PMID: 22178972
Laslo T, von Zaluskowski P, Gabris C, Lodd E, Rückert C, Dangel P, Kalinowski J, Auchter M, Seibold G, Eikmanns BJ., J Bacteriol 194(5), 2012
PMID: 22178972
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons.
Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Spröer C, Junge H, Vater J, Pühler A, Klenk HP., Int J Syst Evol Microbiol 61(pt 8), 2011
PMID: 20817842
Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Spröer C, Junge H, Vater J, Pühler A, Klenk HP., Int J Syst Evol Microbiol 61(pt 8), 2011
PMID: 20817842
Identification of genes differentially expressed in a resistant reaction to Mycosphaerella pinodes in pea using microarray technology.
Fondevilla S, Küster H, Krajinski F, Cubero JI, Rubiales D., BMC Genomics 12(), 2011
PMID: 21226971
Fondevilla S, Küster H, Krajinski F, Cubero JI, Rubiales D., BMC Genomics 12(), 2011
PMID: 21226971
Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942.
Schwarz D, Nodop A, Hüge J, Purfürst S, Forchhammer K, Michel KP, Bauwe H, Kopka J, Hagemann M., Plant Physiol 155(4), 2011
PMID: 21282404
Schwarz D, Nodop A, Hüge J, Purfürst S, Forchhammer K, Michel KP, Bauwe H, Kopka J, Hagemann M., Plant Physiol 155(4), 2011
PMID: 21282404
FadD is required for utilization of endogenous fatty acids released from membrane lipids.
Pech-Canul Á, Nogales J, Miranda-Molina A, Álvarez L, Geiger O, Soto MJ, López-Lara IM., J Bacteriol 193(22), 2011
PMID: 21926226
Pech-Canul Á, Nogales J, Miranda-Molina A, Álvarez L, Geiger O, Soto MJ, López-Lara IM., J Bacteriol 193(22), 2011
PMID: 21926226
Characterization of the human AGE1.HN cell line: a systems biology approach.
Scholz S, Luebbecke M, Rath A, Schraeder E, Rose T, Büntemeyer H, Scheper T, Reichl U, Noll T., BMC Proc 5 Suppl 8(), 2011
PMID: 22373196
Scholz S, Luebbecke M, Rath A, Schraeder E, Rose T, Büntemeyer H, Scheper T, Reichl U, Noll T., BMC Proc 5 Suppl 8(), 2011
PMID: 22373196
Adaptation of Corynebacterium glutamicum to salt-stress conditions.
Fränzel B, Trötschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA., Proteomics 10(3), 2010
PMID: 19950167
Fränzel B, Trötschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA., Proteomics 10(3), 2010
PMID: 19950167
The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa.
Torres-Quesada O, Oruezabal RI, Peregrina A, Jofré E, Lloret J, Rivilla R, Toro N, Jiménez-Zurdo JI., BMC Microbiol 10(), 2010
PMID: 20205931
Torres-Quesada O, Oruezabal RI, Peregrina A, Jofré E, Lloret J, Rivilla R, Toro N, Jiménez-Zurdo JI., BMC Microbiol 10(), 2010
PMID: 20205931
Transcriptome profiling of a Sinorhizobium meliloti fadD mutant reveals the role of rhizobactin 1021 biosynthesis and regulation genes in the control of swarming.
Nogales J, Domínguez-Ferreras A, Amaya-Gómez CV, van Dillewijn P, Cuéllar V, Sanjuán J, Olivares J, Soto MJ., BMC Genomics 11(), 2010
PMID: 20210991
Nogales J, Domínguez-Ferreras A, Amaya-Gómez CV, van Dillewijn P, Cuéllar V, Sanjuán J, Olivares J, Soto MJ., BMC Genomics 11(), 2010
PMID: 20210991
The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti.
de Lucena DK, Pühler A, Weidner S., BMC Microbiol 10(), 2010
PMID: 20955556
de Lucena DK, Pühler A, Weidner S., BMC Microbiol 10(), 2010
PMID: 20955556
ADP-glucose pyrophosphorylase-deficient pea embryos reveal specific transcriptional and metabolic changes of carbon-nitrogen metabolism and stress responses.
Weigelt K, Küster H, Rutten T, Fait A, Fernie AR, Miersch O, Wasternack C, Emery RJ, Desel C, Hosein F, Müller M, Saalbach I, Weber H., Plant Physiol 149(1), 2009
PMID: 18987213
Weigelt K, Küster H, Rutten T, Fait A, Fernie AR, Miersch O, Wasternack C, Emery RJ, Desel C, Hosein F, Müller M, Saalbach I, Weber H., Plant Physiol 149(1), 2009
PMID: 18987213
A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data.
Becker A, Barnett MJ, Capela D, Dondrup M, Kamp PB, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, Yurgel SN, Batut J, Long SR, Pühler A, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19103235
Becker A, Barnett MJ, Capela D, Dondrup M, Kamp PB, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, Yurgel SN, Batut J, Long SR, Pühler A, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19103235
Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.
Baumbach J, Tauch A, Rahmann S., Brief Bioinform 10(1), 2009
PMID: 19074493
Baumbach J, Tauch A, Rahmann S., Brief Bioinform 10(1), 2009
PMID: 19074493
Characterization of the LacI-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032.
Nentwich SS, Brinkrolf K, Gaigalat L, Hüser AT, Rey DA, Mohrbach T, Marin K, Pühler A, Tauch A, Kalinowski J., Microbiology 155(pt 1), 2009
PMID: 19118356
Nentwich SS, Brinkrolf K, Gaigalat L, Hüser AT, Rey DA, Mohrbach T, Marin K, Pühler A, Tauch A, Kalinowski J., Microbiology 155(pt 1), 2009
PMID: 19118356
Overlapping expression patterns and differential transcript levels of phosphate transporter genes in arbuscular mycorrhizal, Pi-fertilised and phytohormone-treated Medicago truncatula roots.
Grunwald U, Guo W, Fischer K, Isayenkov S, Ludwig-Müller J, Hause B, Yan X, Küster H, Franken P., Planta 229(5), 2009
PMID: 19169704
Grunwald U, Guo W, Fischer K, Isayenkov S, Ludwig-Müller J, Hause B, Yan X, Küster H, Franken P., Planta 229(5), 2009
PMID: 19169704
Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum.
Barreiro C, Nakunst D, Hüser AT, de Paz HD, Kalinowski J, Martín JF., Microbiology 155(pt 2), 2009
PMID: 19202085
Barreiro C, Nakunst D, Hüser AT, de Paz HD, Kalinowski J, Martín JF., Microbiology 155(pt 2), 2009
PMID: 19202085
EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.
Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19200358
Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19200358
TRUNCATULIX--a data warehouse for the legume community.
Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A., BMC Plant Biol 9(), 2009
PMID: 19210766
Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A., BMC Plant Biol 9(), 2009
PMID: 19210766
The time course of the transcriptomic response of Sinorhizobium meliloti 1021 following a shift to acidic pH.
Hellweg C, Pühler A, Weidner S., BMC Microbiol 9(), 2009
PMID: 19216801
Hellweg C, Pühler A, Weidner S., BMC Microbiol 9(), 2009
PMID: 19216801
The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19297685
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19297685
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.
Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Hüser AT, Hansmeier N, Pühler A, Borovok I, Tauch A., Microbiology 155(pt 5), 2009
PMID: 19372162
Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Hüser AT, Hansmeier N, Pühler A, Borovok I, Tauch A., Microbiology 155(pt 5), 2009
PMID: 19372162
Composite Medicago truncatula plants harbouring Agrobacterium rhizogenes-transformed roots reveal normal mycorrhization by Glomus intraradices.
Mrosk C, Forner S, Hause G, Küster H, Kopka J, Hause B., J Exp Bot 60(13), 2009
PMID: 19574251
Mrosk C, Forner S, Hause G, Küster H, Kopka J, Hause B., J Exp Bot 60(13), 2009
PMID: 19574251
Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis.
Follmann M, Ochrombel I, Krämer R, Trötschel C, Poetsch A, Rückert C, Hüser A, Persicke M, Seiferling D, Kalinowski J, Marin K., BMC Genomics 10(), 2009
PMID: 20025733
Follmann M, Ochrombel I, Krämer R, Trötschel C, Poetsch A, Rückert C, Hüser A, Persicke M, Seiferling D, Kalinowski J, Marin K., BMC Genomics 10(), 2009
PMID: 20025733
Identification of a multigene family encoding putative beta-glucan-binding proteins in Medicago truncatula.
Leclercq J, Fliegmann J, Tellström V, Niebel A, Cullimore JV, Niehaus K, Küster H, Ebel J, Mithöfer A., J Plant Physiol 165(7), 2008
PMID: 17728012
Leclercq J, Fliegmann J, Tellström V, Niebel A, Cullimore JV, Niehaus K, Küster H, Ebel J, Mithöfer A., J Plant Physiol 165(7), 2008
PMID: 17728012
phylochipanalyser -- a program for analysing hierarchical probe sets
METFIES K, BORSUTZKI P, GESCHER C, MEDLIN LK, FRICKENHAUS S., Mol Ecol Notes 8(1), 2008
PMID: IND43986592
METFIES K, BORSUTZKI P, GESCHER C, MEDLIN LK, FRICKENHAUS S., Mol Ecol Notes 8(1), 2008
PMID: IND43986592
The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences.
Brinkrolf K, Plöger S, Solle S, Brune I, Nentwich SS, Hüser AT, Kalinowski J, Pühler A, Tauch A., Microbiology 154(pt 4), 2008
PMID: 18375800
Brinkrolf K, Plöger S, Solle S, Brune I, Nentwich SS, Hüser AT, Kalinowski J, Pühler A, Tauch A., Microbiology 154(pt 4), 2008
PMID: 18375800
Transcript profiling reveals new insights into the acclimation of the mesophilic fresh-water cyanobacterium Synechococcus elongatus PCC 7942 to iron starvation.
Nodop A, Pietsch D, Höcker R, Becker A, Pistorius EK, Forchhammer K, Michel KP., Plant Physiol 147(2), 2008
PMID: 18424627
Nodop A, Pietsch D, Höcker R, Becker A, Pistorius EK, Forchhammer K, Michel KP., Plant Physiol 147(2), 2008
PMID: 18424627
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A., J Biotechnol 136(1-2), 2008
PMID: 18562031
Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A., J Biotechnol 136(1-2), 2008
PMID: 18562031
Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism.
Weigelt K, Küster H, Radchuk R, Müller M, Weichert H, Fait A, Fernie AR, Saalbach I, Weber H., Plant J 55(6), 2008
PMID: 18494854
Weigelt K, Küster H, Radchuk R, Müller M, Weichert H, Fait A, Fernie AR, Saalbach I, Weber H., Plant J 55(6), 2008
PMID: 18494854
Transcript profiling indicates that the absence of PsbO affects the coordination of C and N metabolism in Synechocystis sp. PCC 6803.
Schriek S, Aguirre-von-Wobeser E, Nodop A, Becker A, Ibelings BW, Bok J, Staiger D, Matthijs HC, Pistorius EK, Michel KP., Physiol Plant 133(3), 2008
PMID: 18419737
Schriek S, Aguirre-von-Wobeser E, Nodop A, Becker A, Ibelings BW, Bok J, Staiger D, Matthijs HC, Pistorius EK, Michel KP., Physiol Plant 133(3), 2008
PMID: 18419737
Transcript profiling indicates that the absence of PsbO affects the coordination of C and N metabolism in Synechocystis sp. PCC 6803
Schriek S, Aguirre-von-Wobeser E, Nodop A, Becker A, Ibelings BW, Bok J, Staiger D, Matthijs HCP, Pistorius EK, Michel KP., Physiol Plant 133(3), 2008
PMID: IND44069758
Schriek S, Aguirre-von-Wobeser E, Nodop A, Becker A, Ibelings BW, Bok J, Staiger D, Matthijs HCP, Pistorius EK, Michel KP., Physiol Plant 133(3), 2008
PMID: IND44069758
Evidence for the involvement in nodulation of the two small putative regulatory peptide-encoding genes MtRALFL1 and MtDVL1.
Combier JP, Küster H, Journet EP, Hohnjec N, Gamas P, Niebel A., Mol Plant Microbe Interact 21(8), 2008
PMID: 18616408
Combier JP, Küster H, Journet EP, Hohnjec N, Gamas P, Niebel A., Mol Plant Microbe Interact 21(8), 2008
PMID: 18616408
MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A., Bioinformatics 24(23), 2008
PMID: 18765459
Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A., Bioinformatics 24(23), 2008
PMID: 18765459
The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules.
Rückert C, Milse J, Albersmeier A, Koch DJ, Pühler A, Kalinowski J., BMC Genomics 9(), 2008
PMID: 18854009
Rückert C, Milse J, Albersmeier A, Koch DJ, Pühler A, Kalinowski J., BMC Genomics 9(), 2008
PMID: 18854009
Sinorhizobium meliloti regulator MucR couples exopolysaccharide synthesis and motility.
Bahlawane C, McIntosh M, Krol E, Becker A., Mol Plant Microbe Interact 21(11), 2008
PMID: 18842098
Bahlawane C, McIntosh M, Krol E, Becker A., Mol Plant Microbe Interact 21(11), 2008
PMID: 18842098
ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets.
Killion PJ, Iyer VR., Genome Biol 9(11), 2008
PMID: 19014503
Killion PJ, Iyer VR., Genome Biol 9(11), 2008
PMID: 19014503
The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase.
Larisch C, Nakunst D, Hüser AT, Tauch A, Kalinowski J., BMC Genomics 8(), 2007
PMID: 17204139
Larisch C, Nakunst D, Hüser AT, Tauch A, Kalinowski J., BMC Genomics 8(), 2007
PMID: 17204139
The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula.
Tellström V, Usadel B, Thimm O, Stitt M, Küster H, Niehaus K., Plant Physiol 143(2), 2007
PMID: 17220366
Tellström V, Usadel B, Thimm O, Stitt M, Küster H, Niehaus K., Plant Physiol 143(2), 2007
PMID: 17220366
The IclR-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum.
Brune I, Jochmann N, Brinkrolf K, Hüser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A., J Bacteriol 189(7), 2007
PMID: 17259312
Brune I, Jochmann N, Brinkrolf K, Hüser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Pühler A, Tauch A., J Bacteriol 189(7), 2007
PMID: 17259312
The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes.
Nakunst D, Larisch C, Hüser AT, Tauch A, Pühler A, Kalinowski J., J Bacteriol 189(13), 2007
PMID: 17483229
Nakunst D, Larisch C, Hüser AT, Tauch A, Pühler A, Kalinowski J., J Bacteriol 189(13), 2007
PMID: 17483229
FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum.
Hänssler E, Müller T, Jessberger N, Völzke A, Plassmeier J, Kalinowski J, Krämer R, Burkovski A., Appl Microbiol Biotechnol 76(3), 2007
PMID: 17483938
Hänssler E, Müller T, Jessberger N, Völzke A, Plassmeier J, Kalinowski J, Krämer R, Burkovski A., Appl Microbiol Biotechnol 76(3), 2007
PMID: 17483938
Suppression of the pathogen-inducible Medicago truncatula putative protease-inhibitor MtTi2 does not influence root infection by Aphanomyces euteiches but results in transcriptional changes from wildtype roots
Nyamsuren O, Firnhaber C, Hohnjec N, Becker A, Küster H, Krajinski F., Plant Sci 173(2), 2007
PMID: IND43936576
Nyamsuren O, Firnhaber C, Hohnjec N, Becker A, Küster H, Krajinski F., Plant Sci 173(2), 2007
PMID: IND43936576
A combined proteome and transcriptome analysis of developing Medicago truncatula seeds: evidence for metabolic specialization of maternal and filial tissues.
Gallardo K, Firnhaber C, Zuber H, Héricher D, Belghazi M, Henry C, Küster H, Thompson R., Mol Cell Proteomics 6(12), 2007
PMID: 17848586
Gallardo K, Firnhaber C, Zuber H, Héricher D, Belghazi M, Henry C, Küster H, Thompson R., Mol Cell Proteomics 6(12), 2007
PMID: 17848586
CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.
Baumbach J., BMC Bioinformatics 8(), 2007
PMID: 17986320
Baumbach J., BMC Bioinformatics 8(), 2007
PMID: 17986320
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate:sugar phosphotransferase system (PTS) in Corynebacterium glutamicum.
Gaigalat L, Schlüter JP, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J., BMC Mol Biol 8(), 2007
PMID: 18005413
Gaigalat L, Schlüter JP, Hartmann M, Mormann S, Tauch A, Pühler A, Kalinowski J., BMC Mol Biol 8(), 2007
PMID: 18005413
CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A., BMC Syst Biol 1(), 2007
PMID: 18034885
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A., BMC Syst Biol 1(), 2007
PMID: 18034885
Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula.
Hohnjec N, Henckel K, Bekel T, Gouzy J, Dondrup M, Goesmann A, Kuster H., Functional plant biology : FPB. 33(8), 2006
PMID: IND43838506
Hohnjec N, Henckel K, Bekel T, Gouzy J, Dondrup M, Goesmann A, Kuster H., Functional plant biology : FPB. 33(8), 2006
PMID: IND43838506
Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression.
Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A., J Biotechnol 127(1), 2006
PMID: 16890319
Brune I, Becker A, Paarmann D, Albersmeier A, Kalinowski J, Pühler A, Tauch A., J Biotechnol 127(1), 2006
PMID: 16890319
Transcriptome profiling reveals the importance of plasmid pSymB for osmoadaptation of Sinorhizobium meliloti.
Domínguez-Ferreras A, Pérez-Arnedo R, Becker A, Olivares J, Soto MJ, Sanjuán J., J Bacteriol 188(21), 2006
PMID: 16916894
Domínguez-Ferreras A, Pérez-Arnedo R, Becker A, Olivares J, Soto MJ, Sanjuán J., J Bacteriol 188(21), 2006
PMID: 16916894
Metabolite profiles of nodulated alfalfa plants indicate that distinct stages of nodule organogenesis are accompanied by global physiological adaptations.
Barsch A, Tellström V, Patschkowski T, Küster H, Niehaus K., Mol Plant Microbe Interact 19(9), 2006
PMID: 16941904
Barsch A, Tellström V, Patschkowski T, Küster H, Niehaus K., Mol Plant Microbe Interact 19(9), 2006
PMID: 16941904
Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase.
Brockmann-Gretza O, Kalinowski J., BMC Genomics 7(), 2006
PMID: 16961923
Brockmann-Gretza O, Kalinowski J., BMC Genomics 7(), 2006
PMID: 16961923
Overlaps in the transcriptional profiles of Medicago truncatula roots inoculated with two different Glomus fungi provide insights into the genetic program activated during arbuscular mycorrhiza.
Hohnjec N, Vieweg MF, Pühler A, Becker A, Küster H., Plant Physiol 137(4), 2005
PMID: 15778460
Hohnjec N, Vieweg MF, Pühler A, Becker A, Küster H., Plant Physiol 137(4), 2005
PMID: 15778460
Adaptation of Corynebacterium glutamicum to ammonium limitation: a global analysis using transcriptome and proteome techniques.
Silberbach M, Schäfer M, Hüser AT, Kalinowski J, Pühler A, Krämer R, Burkovski A., Appl Environ Microbiol 71(5), 2005
PMID: 15870326
Silberbach M, Schäfer M, Hüser AT, Kalinowski J, Pühler A, Krämer R, Burkovski A., Appl Environ Microbiol 71(5), 2005
PMID: 15870326
The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.
Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J., Mol Microbiol 56(4), 2005
PMID: 15853877
Rey DA, Nentwich SS, Koch DJ, Rückert C, Pühler A, Tauch A, Kalinowski J., Mol Microbiol 56(4), 2005
PMID: 15853877
Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genome-wide transcriptional profiling.
Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisáková V, Pátek M, Kalinowski J, Brune I, Pühler A, Tauch A., Appl Environ Microbiol 71(6), 2005
PMID: 15933028
Hüser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisáková V, Pátek M, Kalinowski J, Brune I, Pühler A, Tauch A., Appl Environ Microbiol 71(6), 2005
PMID: 15933028
EST sequencing and time course microarray hybridizations identify more than 700 Medicago truncatula genes with developmental expression regulation in flowers and pods.
Firnhaber C, Pühler A, Küster H., Planta 222(2), 2005
PMID: 15968508
Firnhaber C, Pühler A, Küster H., Planta 222(2), 2005
PMID: 15968508
BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser.
Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F., Nucleic Acids Res 33(web server issue), 2005
PMID: 15980569
Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F., Nucleic Acids Res 33(web server issue), 2005
PMID: 15980569
DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum.
Silberbach M, Hüser A, Kalinowski J, Pühler A, Walter B, Krämer R, Burkovski A., J Biotechnol 119(4), 2005
PMID: 15935503
Silberbach M, Hüser A, Kalinowski J, Pühler A, Walter B, Krämer R, Burkovski A., J Biotechnol 119(4), 2005
PMID: 15935503
Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation.
Chao TC, Buhrmester J, Hansmeier N, Pühler A, Weidner S., Appl Environ Microbiol 71(10), 2005
PMID: 16204511
Chao TC, Buhrmester J, Hansmeier N, Pühler A, Weidner S., Appl Environ Microbiol 71(10), 2005
PMID: 16204511
The Sinorhizobium meliloti fur gene regulates, with dependence on Mn(II), transcription of the sitABCD operon, encoding a metal-type transporter.
Chao TC, Becker A, Buhrmester J, Pühler A, Weidner S., J Bacteriol 186(11), 2004
PMID: 15150249
Chao TC, Becker A, Buhrmester J, Pühler A, Weidner S., J Bacteriol 186(11), 2004
PMID: 15150249
Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011.
Krol E, Becker A., Mol Genet Genomics 272(1), 2004
PMID: 15221452
Krol E, Becker A., Mol Genet Genomics 272(1), 2004
PMID: 15221452
Wide-range transcriptional modulating effect of ntrR under microaerobiosis in Sinorhizobium meliloti.
Puskás LG, Nagy ZB, Kelemen JZ, Rüberg S, Bodogai M, Becker A, Dusha I., Mol Genet Genomics 272(3), 2004
PMID: 15365818
Puskás LG, Nagy ZB, Kelemen JZ, Rüberg S, Bodogai M, Becker A, Dusha I., Mol Genet Genomics 272(3), 2004
PMID: 15365818
Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program.
El Yahyaoui F, Küster H, Ben Amor B, Hohnjec N, Pühler A, Becker A, Gouzy J, Vernié T, Gough C, Niebel A, Godiard L, Gamas P., Plant Physiol 136(2), 2004
PMID: 15466239
El Yahyaoui F, Küster H, Ben Amor B, Hohnjec N, Pühler A, Becker A, Gouzy J, Vernié T, Gough C, Niebel A, Godiard L, Gamas P., Plant Physiol 136(2), 2004
PMID: 15466239
Transcriptome profiling in root nodules and arbuscular mycorrhiza identifies a collection of novel genes induced during Medicago truncatula root endosymbioses.
Manthey K, Krajinski F, Hohnjec N, Firnhaber C, Pühler A, Perlick AM, Küster H., Mol Plant Microbe Interact 17(10), 2004
PMID: 15497399
Manthey K, Krajinski F, Hohnjec N, Firnhaber C, Pühler A, Perlick AM, Küster H., Mol Plant Microbe Interact 17(10), 2004
PMID: 15497399
Bioinformatics support for high-throughput proteomics.
Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F., J Biotechnol 106(2-3), 2003
PMID: 14651857
Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F., J Biotechnol 106(2-3), 2003
PMID: 14651857
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F., J Biotechnol 106(2-3), 2003
PMID: 14651858
Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F., J Biotechnol 106(2-3), 2003
PMID: 14651858
42 References
Daten bereitgestellt von Europe PubMed Central.
AUTHOR UNKNOWN, 0
Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.
Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, Gurjal M, Hong A, Huizar L, Hyman RW, Kahn D, Kahn ML, Kalman S, Keating DH, Palm C, Peck MC, Surzycki R, Wells DH, Yeh KC, Davis RW, Federspiel NA, Long SR., Proc. Natl. Acad. Sci. U.S.A. 98(17), 2001
PMID: 11481432
Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, Gurjal M, Hong A, Huizar L, Hyman RW, Kahn D, Kahn ML, Kalman S, Keating DH, Palm C, Peck MC, Surzycki R, Wells DH, Yeh KC, Davis RW, Federspiel NA, Long SR., Proc. Natl. Acad. Sci. U.S.A. 98(17), 2001
PMID: 11481432
AUTHOR UNKNOWN, 0
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M., Nat. Genet. 29(4), 2001
PMID: 11726920
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M., Nat. Genet. 29(4), 2001
PMID: 11726920
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
Exploring the metabolic and genetic control of gene expression on a genomic scale.
DeRisi JL, Iyer VR, Brown PO., Science 278(5338), 1997
PMID: 9381177
DeRisi JL, Iyer VR, Brown PO., Science 278(5338), 1997
PMID: 9381177
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
Dudoit, Stat. Sinica 12(1), 2002
Dudoit, Stat. Sinica 12(1), 2002
AUTHOR UNKNOWN, 0
J-Express: exploring gene expression data using Java.
Dysvik B, Jonassen I., Bioinformatics 17(4), 2001
PMID: 11301307
Dysvik B, Jonassen I., Bioinformatics 17(4), 2001
PMID: 11301307
Cluster analysis and display of genome-wide expression patterns.
Eisen MB, Spellman PT, Brown PO, Botstein D., Proc. Natl. Acad. Sci. U.S.A. 95(25), 1998
PMID: 9843981
Eisen MB, Spellman PT, Brown PO, Botstein D., Proc. Natl. Acad. Sci. U.S.A. 95(25), 1998
PMID: 9843981
Multiplexed biochemical assays with biological chips.
Fodor SP, Rava RP, Huang XC, Pease AC, Holmes CP, Adams CL., Nature 364(6437), 1993
PMID: 7687751
Fodor SP, Rava RP, Huang XC, Pease AC, Holmes CP, Adams CL., Nature 364(6437), 1993
PMID: 7687751
The composite genome of the legume symbiont Sinorhizobium meliloti.
Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J., Science 293(5530), 2001
PMID: 11474104
Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J., Science 293(5530), 2001
PMID: 11474104
AUTHOR UNKNOWN, 0
A novel method for real time quantitative RT-PCR.
Gibson UE, Heid CA, Williams PM., Genome Res. 6(10), 1996
PMID: 8908519
Gibson UE, Heid CA, Williams PM., Genome Res. 6(10), 1996
PMID: 8908519
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.
Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651858
Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651858
Real time quantitative PCR.
Heid CA, Stevens J, Livak KJ, Williams PM., Genome Res. 6(10), 1996
PMID: 8908518
Heid CA, Stevens J, Livak KJ, Williams PM., Genome Res. 6(10), 1996
PMID: 8908518
Variance stabilization applied to microarray data calibration and to the quantification of differential expression.
Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M., Bioinformatics 18 Suppl 1(), 2002
PMID: 12169536
Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M., Bioinformatics 18 Suppl 1(), 2002
PMID: 12169536
Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source.
Huser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Puhler A, Wiegrabe I, Tauch A., J. Biotechnol. 106(2-3), 2003
PMID: 14651867
Huser AT, Becker A, Brune I, Dondrup M, Kalinowski J, Plassmeier J, Puhler A, Wiegrabe I, Tauch A., J. Biotechnol. 106(2-3), 2003
PMID: 14651867
R: a language for data analysis and graphics
Ihaka, J. Comput. Graph. Stat. 5(3), 1996
Ihaka, J. Comput. Graph. Stat. 5(3), 1996
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
AUTHOR UNKNOWN, 0
Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
Ruberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang Y, Puhler A, Weidner S, Becker A., J. Biotechnol. 106(2-3), 2003
PMID: 14651866
Ruberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang Y, Puhler A, Weidner S, Becker A., J. Biotechnol. 106(2-3), 2003
PMID: 14651866
Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
Schena M, Shalon D, Davis RW, Brown PO., Science 270(5235), 1995
PMID: 7569999
Schena M, Shalon D, Davis RW, Brown PO., Science 270(5235), 1995
PMID: 7569999
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B., Mol. Biol. Cell 9(12), 1998
PMID: 9843569
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B., Mol. Biol. Cell 9(12), 1998
PMID: 9843569
The EMBL Nucleotide Sequence Database: major new developments.
Stoesser G, Baker W, van den Broek A, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, Nardone F, Stoehr P, Tuli MA, Tzouvara K, Vaughan R., Nucleic Acids Res. 31(1), 2003
PMID: 12519939
Stoesser G, Baker W, van den Broek A, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, Nardone F, Stoehr P, Tuli MA, Tzouvara K, Vaughan R., Nucleic Acids Res. 31(1), 2003
PMID: 12519939
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
Genomics insights into symbiotic nitrogen fixation.
Weidner S, Puhler A, Kuster H., Curr. Opin. Biotechnol. 14(2), 2003
PMID: 12732321
Weidner S, Puhler A, Kuster H., Curr. Opin. Biotechnol. 14(2), 2003
PMID: 12732321
AUTHOR UNKNOWN, 0
Bioinformatics support for high-throughput proteomics.
Wilke A, Ruckert C, Bartels D, Dondrup M, Goesmann A, Huser AT, Kespohl S, Linke B, Mahne M, McHardy A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651857
Wilke A, Ruckert C, Bartels D, Dondrup M, Goesmann A, Huser AT, Kespohl S, Linke B, Mahne M, McHardy A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651857
AUTHOR UNKNOWN, 0
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 14651856
PubMed | Europe PMC
Suchen in
Google Scholar