PUB - Publikationen an der Universität Bielefeld

Streptococcus pneumoniae colonisation: the key to pneumococcal disease.
Bogaert D, De Groot R, Hermans PW., Lancet Infect Dis 4(3), 2004
PMID: 14998500

Effects of community-wide vaccination with PCV-7 on pneumococcal nasopharyngeal carriage in the Gambia: a cluster-randomized trial.
Roca A, Hill PC, Townend J, Egere U, Antonio M, Bojang A, Akisanya A, Litchfield T, Nsekpong DE, Oluwalana C, Howie SR, Greenwood B, Adegbola RA., PLoS Med. 8(10), 2011
PMID: 22028630

Pharyngeal colonization prevalence rates for Streptococcus pyogenes and Streptococcus pneumoniae in a respiratory chemoprophylaxis intervention study using azithromycin
AUTHOR UNKNOWN, 2000

High Streptococcus pneumoniae colonization prevalence among HIV-infected Kenyan parents in the year before pneumococcal conjugate vaccine introduction.
Conklin LM, Bigogo G, Jagero G, Hampton L, Junghae M, da Gloria Carvalho M, Pimenta F, Beall B, Taylor T, Plikaytis B, Laserson KF, Vulule J, Van Beneden C, Whitney CG, Breiman RF, Feikin DR., BMC Infect. Dis. 16(), 2016
PMID: 26774803

Über die Agglutination der Pneumokokken und über die Theorie der Agglutination
AUTHOR UNKNOWN, 1902

Sustained reductions in invasive pneumococcal disease in the era of conjugate vaccine.
Pilishvili T, Lexau C, Farley MM, Hadler J, Harrison LH, Bennett NM, Reingold A, Thomas A, Schaffner W, Craig AS, Smith PJ, Beall BW, Whitney CG, Moore MR; Active Bacterial Core Surveillance/Emerging Infections Program Network, Rothrock G, Daily P, Brooks S, Nadle J, Apostol M, Petit S, Fraser MZ, Barrett N, Malpiedi P, Baughman W, Arnold KE, Holmes KD, Vaeth EA, Lynfield R, Triden L, Jewell B, Rainbow J, Morin C, Anderson B, Zansky S, Smith G, Long C, Schmidt MS, Karen Stefonek K, Barnes B, McMinn T, Van Beneden C, Skoff TH, Wright C, Zell E, Mathis S, Facklam R, Franklin AR, Shewmaker PL, Jackson D., J. Infect. Dis. 201(1), 2010
PMID: 19947881

Effects of Infant Pneumococcal Conjugate Vaccination on Serotype Distribution in Invasive Pneumococcal Disease among Children and Adults in Germany.
van der Linden M, Falkenhorst G, Perniciaro S, Imohl M., PLoS ONE 10(7), 2015
PMID: 26132078

Epidemiology and evolution of invasive pneumococcal disease caused by multidrug resistant serotypes of 19A in the 8 years after implementation of pneumococcal conjugate vaccine immunization in Dallas, Texas.
Techasaensiri C, Messina AF, Katz K, Ahmad N, Huang R, McCracken GH Jr., Pediatr. Infect. Dis. J. 29(4), 2010
PMID: 19949357

Emergence of 19A as virulent and multidrug resistant Pneumococcus in Massachusetts following universal immunization of infants with pneumococcal conjugate vaccine.
Pelton SI, Huot H, Finkelstein JA, Bishop CJ, Hsu KK, Kellenberg J, Huang SS, Goldstein R, Hanage WP., Pediatr. Infect. Dis. J. 26(6), 2007
PMID: 17529860

Postvaccine genetic structure of Streptococcus pneumoniae serotype 19A from children in the United States.
Pai R, Moore MR, Pilishvili T, Gertz RE, Whitney CG, Beall B; Active Bacterial Core Surveillance Team., J. Infect. Dis. 192(11), 2005
PMID: 16267772

Population snapshot of emergent Streptococcus pneumoniae serotype 19A in the United States, 2005.
Moore MR, Gertz RE Jr, Woodbury RL, Barkocy-Gallagher GA, Schaffner W, Lexau C, Gershman K, Reingold A, Farley M, Harrison LH, Hadler JL, Bennett NM, Thomas AR, McGee L, Pilishvili T, Brueggemann AB, Whitney CG, Jorgensen JH, Beall B., J. Infect. Dis. 197(7), 2008
PMID: 18419539

Increase of pneumococcal serotype 19A in Italy is due to expansion of the piliated clone ST416/CC199.
Del Grosso M, Camilli R, D'Ambrosio F, Petrucci G, Melchiorre S, Moschioni M, Gherardi G, Pantosti A., J. Med. Microbiol. 62(Pt 8), 2013
PMID: 23722433

Streptococcus pneumoniae clonal complex 199: genetic diversity and tissue-specific virulence.
Thomas JC, Figueira M, Fennie KP, Laufer AS, Kong Y, Pichichero ME, Pelton SI, Pettigrew MM., PLoS ONE 6(4), 2011
PMID: 21533186

Epidemiology of serotype 19A isolates from invasive pneumococcal disease in German children.
van der Linden M, Reinert RR, Kern WV, Imohl M., BMC Infect. Dis. 13(), 2013
PMID: 23384407

Increased antimicrobial resistance among nonvaccine serotypes of Streptococcus pneumoniae in the pediatric population after the introduction of 7-valent pneumococcal vaccine in the United States.
Farrell DJ, Klugman KP, Pichichero M., Pediatr. Infect. Dis. J. 26(2), 2007
PMID: 17259873

Temporal Variations among Invasive Pneumococcal Disease Serotypes in Children and Adults in Germany (1992-2008).
Imohl M, Reinert RR, van der Linden M., Int J Microbiol 2010(), 2010
PMID: 20671944

Evolution of antimicrobial resistance and serotype distribution of Streptococcus pneumoniae isolated from children with invasive and noninvasive pneumococcal diseases in Algeria from 2005 to 2012.
Ramdani-Bouguessa N, Ziane H, Bekhoucha S, Guechi Z, Azzam A, Touati D, Naim M, Azrou S, Hamidi M, Mertani A, Laraba A, Annane T, Kermani S, Tazir M., New Microbes New Infect 6(), 2015
PMID: 26106481

Eradication of invasive pneumococcal disease due to the seven-valent pneumococcal conjugate vaccine serotypes in Calgary, Alberta.
Leal J, Vanderkooi OG, Church DL, Macdonald J, Tyrrell GJ, Kellner JD., Pediatr. Infect. Dis. J. 31(9), 2012
PMID: 22673137

Emergence of serogroup 15 Streptococcus pneumoniae of diverse genetic backgrounds following the introduction of pneumococcal conjugate vaccines in Hong Kong.
Liyanapathirana V, Nelson EA, Ang I, Subramanian R, Ma H, Ip M., Diagn. Microbiol. Infect. Dis. 81(1), 2014
PMID: 25445117

Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes.
Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, Donohoe K, Harris D, Murphy L, Quail MA, Samuel G, Skovsted IC, Kaltoft MS, Barrell B, Reeves PR, Parkhill J, Spratt BG., PLoS Genet. 2(3), 2006
PMID: 16532061

Sequence diversity within the capsular genes of Streptococcus pneumoniae serogroup 6 and 19.
Elberse K, Witteveen S, van der Heide H, van de Pol I, Schot C, van der Ende A, Berbers G, Schouls L., PLoS ONE 6(9), 2011
PMID: 21949837

Crystal structures of Mycobacteria tuberculosis and Klebsiella pneumoniae UDP-galactopyranose mutase in the oxidised state and Klebsiella pneumoniae UDP-galactopyranose mutase in the (active) reduced state.
Beis K, Srikannathasan V, Liu H, Fullerton SW, Bamford VA, Sanders DA, Whitfield C, McNeil MR, Naismith JH., J. Mol. Biol. 348(4), 2005
PMID: 15843027

Galactofuranose biosynthesis in Escherichia coli K-12: identification and cloning of UDP-galactopyranose mutase.
Nassau PM, Martin SL, Brown RE, Weston A, Monsey D, McNeil MR, Duncan K., J. Bacteriol. 178(4), 1996
PMID: 8576037

High frequencies of short frameshifts in poly-CA/TG tandem repeats borne by bacteriophage M13 in Escherichia coli K-12.
Levinson G, Gutman GA., Nucleic Acids Res. 15(13), 1987
PMID: 3299269

Macrolide efflux in Streptococcus pneumoniae is mediated by a dual efflux pump (mel and mef) and is erythromycin inducible.
Ambrose KD, Nisbet R, Stephens DS., Antimicrob. Agents Chemother. 49(10), 2005
PMID: 16189099

DNA gyrase, topoisomerase IV, and the 4-quinolones.
Drlica K, Zhao X., Microbiol. Mol. Biol. Rev. 61(3), 1997
PMID: 9293187

Identification of an efflux pump gene, pmrA, associated with fluoroquinolone resistance in Streptococcus pneumoniae.
Gill MJ, Brenwald NP, Wise R., Antimicrob. Agents Chemother. 43(1), 1999
PMID: 9869592

Involvement of the putative ATP-dependent efflux proteins PatA and PatB in fluoroquinolone resistance of a multidrug-resistant mutant of Streptococcus pneumoniae.
Marrer E, Schad K, Satoh AT, Page MG, Johnson MM, Piddock LJ., Antimicrob. Agents Chemother. 50(2), 2006
PMID: 16436727

Contribution of topoisomerase IV and DNA gyrase mutations in Streptococcus pneumoniae to resistance to novel fluoroquinolones.
Pestova E, Beyer R, Cianciotto NP, Noskin GA, Peterson LR., Antimicrob. Agents Chemother. 43(8), 1999
PMID: 10428926

A novel gene amplification causes upregulation of the PatAB ABC transporter and fluoroquinolone resistance in Streptococcus pneumoniae.
Baylay AJ, Ivens A, Piddock LJ., Antimicrob. Agents Chemother. 59(6), 2015
PMID: 25779578

Evidence for efflux pumps, other than PmrA, associated with fluoroquinolone resistance in Streptococcus pneumoniae
AUTHOR UNKNOWN, 2003

Genetics of high level penicillin resistance in clinical isolates of Streptococcus pneumoniae.
Barcus VA, Ghanekar K, Yeo M, Coffey TJ, Dowson CG., FEMS Microbiol. Lett. 126(3), 1995
PMID: 7729674

Genetics of resistance to third-generation cephalosporins in clinical isolates of Streptococcus pneumoniae.
Munoz R, Dowson CG, Daniels M, Coffey TJ, Martin C, Hakenbeck R, Spratt BG., Mol. Microbiol. 6(17), 1992
PMID: 1406283

beta-lactam resistance in Streptococcus pneumoniae: penicillin-binding proteins and non-penicillin-binding proteins.
Hakenbeck R, Grebe T, Zahner D, Stock JB., Mol. Microbiol. 33(4), 1999
PMID: 10447877

Vaccine escape recombinants emerge after pneumococcal vaccination in the United States.
Brueggemann AB, Pai R, Crook DW, Beall B., PLoS Pathog. 3(11), 2007
PMID: 18020702

Mutations in the active site of penicillin-binding protein PBP2x from Streptococcus pneumoniae. Role in the specificity for beta-lactam antibiotics.
Mouz N, Di Guilmi AM, Gordon E, Hakenbeck R, Dideberg O, Vernet T., J. Biol. Chem. 274(27), 1999
PMID: 10383423

X-ray structure of Streptococcus pneumoniae PBP2x, a primary penicillin target enzyme.
Pares S, Mouz N, Petillot Y, Hakenbeck R, Dideberg O., Nat. Struct. Biol. 3(3), 1996
PMID: 8605631

Amino acid mutations essential to production of an altered PBP 2X conferring high-level beta-lactam resistance in a clinical isolate of Streptococcus pneumoniae.
Smith AM, Klugman KP., Antimicrob. Agents Chemother. 49(11), 2005
PMID: 16251304

Alterations to penicillin-binding proteins 1A, 2B and 2X amongst penicillin-resistant clinical isolates of Streptococcus pneumoniae serotype 23F from the nasopharyngeal flora of children.
Ferroni A, Berche P., J. Med. Microbiol. 50(9), 2001
PMID: 11549185

Molecular characteristics of pbp1a and pbp2b in clinical Streptococcus pneumoniae isolates in Quebec, Canada.
Granger D, Boily-Larouche G, Turgeon P, Weiss K, Roger M., J. Antimicrob. Chemother. 57(1), 2005
PMID: 16282207

Site-specific mutagenesis analysis of PBP 1A from a penicillin-cephalosporin-resistant pneumococcal isolate.
Smith AM, Klugman KP., Antimicrob. Agents Chemother. 47(1), 2003
PMID: 12499220

Transfer of penicillin resistance from Streptococcus oralis to Streptococcus pneumoniae identifies murE as resistance determinant
AUTHOR UNKNOWN, 2015

Distribution of the mosaic structured murM genes among natural populations of Streptococcus pneumoniae.
Filipe SR, Severina E, Tomasz A., J. Bacteriol. 182(23), 2000
PMID: 11073926

Functional characterization of penicillin-binding protein 1b from Streptococcus pneumoniae.
Di Guilmi AM, Dessen A, Dideberg O, Vernet T., J. Bacteriol. 185(5), 2003
PMID: 12591883

Role of murE in the Expression of beta-lactam antibiotic resistance in Staphylococcus aureus.
Gardete S, Ludovice AM, Sobral RG, Filipe SR, de Lencastre H, Tomasz A., J. Bacteriol. 186(6), 2004
PMID: 14996801

Prevalence of first-step mutants among levofloxacin-susceptible invasive isolates of Streptococcus pneumoniae in the United States.
Pletz MW, Shergill AP, McGee L, Beall B, Whitney CG, Klugman KP; Active Bacterial Core Surveillance Team., Antimicrob. Agents Chemother. 50(4), 2006
PMID: 16569885

Levofloxacin-resistant invasive Streptococcus pneumoniae in the United States: evidence for clonal spread and the impact of conjugate pneumococcal vaccine.
Pletz MW, McGee L, Jorgensen J, Beall B, Facklam RR, Whitney CG, Klugman KP., Antimicrob. Agents Chemother. 48(9), 2004
PMID: 15328116

Incidence of macrolide resistance in Streptococcus pneumoniae after introduction of the pneumococcal conjugate vaccine: population-based assessment.
Stephens DS, Zughaier SM, Whitney CG, Baughman WS, Barker L, Gay K, Jackson D, Orenstein WA, Arnold K, Schuchat A, Farley MM; Georgia Emerging Infections Program., Lancet 365(9462), 2005
PMID: 15752529

Changes in pneumococcal serotypes and antimicrobial resistance after introduction of the 13-valent conjugate vaccine in the United States.
Richter SS, Diekema DJ, Heilmann KP, Dohrn CL, Riahi F, Doern GV., Antimicrob. Agents Chemother. 58(11), 2014
PMID: 25136018

Biological and Epidemiological Features of Antibiotic-Resistant Streptococcus pneumoniae in Pre- and Post-Conjugate Vaccine Eras: a United States Perspective.
Kim L, McGee L, Tomczyk S, Beall B., Clin. Microbiol. Rev. 29(3), 2016
PMID: 27076637

In vitro susceptibility of Streptococcus pneumoniae, Haemophilus influenzae and Moraxella catarrhalis: a European multicenter study during 2000–2001
AUTHOR UNKNOWN, 2003

Shifting genetic structure of invasive serotype 19A pneumococci in the United States.
Beall BW, Gertz RE, Hulkower RL, Whitney CG, Moore MR, Brueggemann AB., J. Infect. Dis. 203(10), 2011
PMID: 21398395

The changing epidemiology of Streptococcus pneumoniae serotype 19A clonal complexes.
Tyrrell GJ., J. Infect. Dis. 203(10), 2011
PMID: 21398394

Temporal trends in invasive pneumococcal disease and pneumococcal serotypes over 7 decades.
Harboe ZB, Benfield TL, Valentiner-Branth P, Hjuler T, Lambertsen L, Kaltoft M, Krogfelt K, Slotved HC, Christensen JJ, Konradsen HB., Clin. Infect. Dis. 50(3), 2010
PMID: 20047478

Increase of serotypes 15A and 23B in IPD in Germany in the PCV13 vaccination era.
van der Linden M, Perniciaro S, Imohl M., BMC Infect. Dis. 15(), 2015
PMID: 25940580

Fast algorithms for large-scale genome alignment and comparison.
Delcher AL, Phillippy A, Carlton J, Salzberg SL., Nucleic Acids Res. 30(11), 2002
PMID: 12034836

GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369

Multilocus sequence typing of total-genome-sequenced bacteria.
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Ponten T, Ussery DW, Aarestrup FM, Lund O., J. Clin. Microbiol. 50(4), 2012
PMID: 22238442

PHAST: a fast phage search tool.
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS., Nucleic Acids Res. 39(Web Server issue), 2011
PMID: 21672955

Identification of acquired antimicrobial resistance genes.
Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV., J. Antimicrob. Chemother. 67(11), 2012
PMID: 22782487

Quality measures for protein alignment benchmarks.
Edgar RC., Nucleic Acids Res. 38(7), 2010
PMID: 20047958

EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249

The genome of Streptococcus mitis B6--what is a commensal?
Denapaite D, Bruckner R, Nuhn M, Reichmann P, Henrich B, Maurer P, Schahle Y, Selbmann P, Zimmermann W, Wambutt R, Hakenbeck R., PLoS ONE 5(2), 2010
PMID: 20195536

MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Edgar RC., Nucleic Acids Res. 32(5), 2004
PMID: 15034147

An alternating least squares approach to inferring phylogenies from pairwise distances.
Felsenstein J., Syst. Biol. 46(1), 1997
PMID: 11975348

The rapid generation of mutation data matrices from protein sequences.
Jones DT, Taylor WR, Thornton JM., Comput. Appl. Biosci. 8(3), 1992
PMID: 1633570

TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.
Stover BC, Muller KF., BMC Bioinformatics 11(), 2010
PMID: 20051126

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.
Darling AE, Mau B, Perna NT., PLoS ONE 5(6), 2010
PMID: 20593022