Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
Zeitschriftenaufsatz
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Autor*in
Celis, Juan Sebastian;
Wibberg, DanielUniBi;
Winkler, AnikaUniBi;
Wilke, Thomas;
Kalinowski, JörnUniBi
Einrichtung
Abstract / Bemerkung
Scleractinian corals of the genus Porites are found across a wide geographical range along the tropical seas. Some species of the genus such as Porites rus are important reef builders in coral reef ecosystems and display a remarkable stress tolerance. Despite their physiological particularities and ecological importance, there is a scarcity of molecular data for members of this genus. Here, we report the first complete mitochondrial genome of Porites rus (Genbank accession number LN864762) which is 18 647 bp in size. It has the typical coral mitochondrial gene arrangement, consisting of 14 protein-coding genes, with a GC content of 36.2%, 12 tRNAs and two rRNAs. The P. rus mitochondrial genome displays two groups: 1 intron in cox1 and nad5 genes. Phylogenetic analyses support the monophyly of the genus Porites. The complete mitochondrial genome will be helpful for addressing questions regarding mitochondrial gene evolution.
Stichworte
GenDB;
mitochondrial genome;
scleractinian coral;
ultrafast sequencing
Erscheinungsjahr
2016
Zeitschriftentitel
Mitochondrial DNA
Band
27
Ausgabe
5
Seite(n)
3695-3696
ISSN
1940-1736
eISSN
1940-1744
Page URI
https://pub.uni-bielefeld.de/record/2904704
Zitieren
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J. Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA. 2016;27(5):3695-3696.
Celis, J. S., Wibberg, D., Winkler, A., Wilke, T., & Kalinowski, J. (2016). Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA, 27(5), 3695-3696. doi:10.3109/19401736.2015.1079860
Celis, Juan Sebastian, Wibberg, Daniel, Winkler, Anika, Wilke, Thomas, and Kalinowski, Jörn. 2016. “Complete mitochondrial genome of the scleractinian coral Porites rus”. Mitochondrial DNA 27 (5): 3695-3696.
Celis, J. S., Wibberg, D., Winkler, A., Wilke, T., and Kalinowski, J. (2016). Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA 27, 3695-3696.
Celis, J.S., et al., 2016. Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA, 27(5), p 3695-3696.
J.S. Celis, et al., “Complete mitochondrial genome of the scleractinian coral Porites rus”, Mitochondrial DNA, vol. 27, 2016, pp. 3695-3696.
Celis, J.S., Wibberg, D., Winkler, A., Wilke, T., Kalinowski, J.: Complete mitochondrial genome of the scleractinian coral Porites rus. Mitochondrial DNA. 27, 3695-3696 (2016).
Celis, Juan Sebastian, Wibberg, Daniel, Winkler, Anika, Wilke, Thomas, and Kalinowski, Jörn. “Complete mitochondrial genome of the scleractinian coral Porites rus”. Mitochondrial DNA 27.5 (2016): 3695-3696.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
22 References
Daten bereitgestellt von Europe PubMed Central.
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
jModelTest 2: more models, new heuristics and parallel computing.
Darriba D, Taboada GL, Doallo R, Posada D., Nat. Methods 9(8), 2012
PMID: 22847109
Darriba D, Taboada GL, Doallo R, Posada D., Nat. Methods 9(8), 2012
PMID: 22847109
Del, Mitochondrial DNA 1736(), 2014
Forskål, 1775
Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria).
Fukami H, Chen CA, Budd AF, Collins A, Wallace C, Chuang YY, Chen C, Dai CF, Iwao K, Sheppard C, Knowlton N., PLoS ONE 3(9), 2008
PMID: 18795098
Fukami H, Chen CA, Budd AF, Collins A, Wallace C, Chuang YY, Chen C, Dai CF, Iwao K, Sheppard C, Knowlton N., PLoS ONE 3(9), 2008
PMID: 18795098
Heinl, J Biotechnol 161(153), 2012
Jaubert, 1977
High-quality genome sequence of Pichia pastoris CBS7435.
Kuberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Puhler A, Schwab H, Glieder A, Pichler H., J. Biotechnol. 154(4), 2011
PMID: 21575661
Kuberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Puhler A, Schwab H, Glieder A, Pichler H., J. Biotechnol. 154(4), 2011
PMID: 21575661
Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG., Bioinformatics 23(21), 2007
PMID: 17846036
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG., Bioinformatics 23(21), 2007
PMID: 17846036
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant.
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, Konig H, Puhler A, Schluter A., J. Biotechnol. 168(4), 2013
PMID: 24184088
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, Konig H, Puhler A, Schluter A., J. Biotechnol. 168(4), 2013
PMID: 24184088
Naked corals: skeleton loss in Scleractinia.
Medina M, Collins AG, Takaoka TL, Kuehl JV, Boore JL., Proc. Natl. Acad. Sci. U.S.A. 103(24), 2006
PMID: 16754865
Medina M, Collins AG, Takaoka TL, Kuehl JV, Boore JL., Proc. Natl. Acad. Sci. U.S.A. 103(24), 2006
PMID: 16754865
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
Romano, Bull Mar Sci 67(), 2000
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
Schwientek P, Szczepanowski R, Ruckert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Puhler A., BMC Genomics 13(), 2012
PMID: 22443545
Schwientek P, Szczepanowski R, Ruckert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Puhler A., BMC Genomics 13(), 2012
PMID: 22443545
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.
Talavera G, Castresana J., Syst. Biol. 56(4), 2007
PMID: 17654362
Talavera G, Castresana J., Syst. Biol. 56(4), 2007
PMID: 17654362
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S., Mol. Biol. Evol. 30(12), 2013
PMID: 24132122
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S., Mol. Biol. Evol. 30(12), 2013
PMID: 24132122
AUTHOR UNKNOWN, 0
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Puhler A, Schluter A., J. Biotechnol. 155(1), 2011
PMID: 21329740
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Puhler A, Schluter A., J. Biotechnol. 155(1), 2011
PMID: 21329740
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A., J. Biotechnol. 167(2), 2012
PMID: 23280342
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A., J. Biotechnol. 167(2), 2012
PMID: 23280342
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