The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity
Gartemann K-H, Abt B, Bekel T, Burger A, Engemann J, Fluegel M, Gaigalat L, Goesmann A, Graefen I, Kalinowski J, Kaup O, et al. (2008)
JOURNAL OF BACTERIOLOGY 190(6): 2138-2149.
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Autor*in
Gartemann, Karl-HeinzUniBi ;
Abt, Birte;
Bekel, Thomas;
Burger, Annette;
Engemann, Jutta;
Fluegel, Monika;
Gaigalat, Lars;
Goesmann, Alexander;
Graefen, Ines;
Kalinowski, JörnUniBi;
Kaup, OlafUniBi ;
Kirchner, Oliver
Alle
Alle
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Fakultät für Biologie > Gentechnologie/Mikrobiologie
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Fakultät für Biologie > Gentechnologie/Mikrobiologie
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Abstract / Bemerkung
Clavibacter michiganensis subsp. michiganensis is a plant-pathogenic aetinomycete that causes bacterial wilt and canker of tomato. The nucleotide sequence of the genome of strain NCPPB382 was determined. The chromosome is circular, consists of 3.298 Mb, and has a high G+C content (72.6%). Annotation revealed 3,080 putative protein-encoding sequences; only 26 pseudogenes were detected. Two rrn operons, 45 tRNAs, and three small stable RNA genes were found. The two circular plasmids, pCM1 (27.4 kbp) and pCM2 (70.0 kbp), which carry pathogenicity genes and thus are essential for virulence, have lower G+C contents (66.5 and 67.6%, respectively). In contrast to the genome of the closely related organism Clavibacter michiganensis subsp. sepedonicus, the genome of C. michiganensis subsp. michiganensis lacks complete insertion elements and transposons. The 129-kb chp/tomA region with a low G+C content near the chromosomal origin of replication was shown to be necessary for pathogenicity. This region contains numerous genes encoding proteins involved in uptake and metabolism of sugars and several serine proteases. There is evidence that single genes located in this region, especially genes encoding serine proteases, are required for efficient colonization of the host. Although C. michiganensis subsp. michiganensis grows mainly in the xylem of tomato plants, no evidence for pronounced genome reduction was found. C. michiganensis subsp. michiganensis seems to have as many transporters and regulators as typical soil-inhabiting bacteria. However, the apparent lack of a sulfate reduction pathway, which makes C. michiganensis subsp. michiganensis dependent on reduced sulfur compounds for growth, is probably the reason for the poor survival of C. michiganensis subsp. michiganensis in soil.
Erscheinungsjahr
2008
Zeitschriftentitel
JOURNAL OF BACTERIOLOGY
Band
190
Ausgabe
6
Seite(n)
2138-2149
ISSN
0021-9193
Page URI
https://pub.uni-bielefeld.de/record/1592345
Zitieren
Gartemann K-H, Abt B, Bekel T, et al. The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY. 2008;190(6):2138-2149.
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY, 190(6), 2138-2149. https://doi.org/10.1128/JB.01595-07
Gartemann, Karl-Heinz, Abt, Birte, Bekel, Thomas, Burger, Annette, Engemann, Jutta, Fluegel, Monika, Gaigalat, Lars, et al. 2008. “The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity”. JOURNAL OF BACTERIOLOGY 190 (6): 2138-2149.
Gartemann, K. - H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., Goesmann, A., Graefen, I., Kalinowski, J., et al. (2008). The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY 190, 2138-2149.
Gartemann, K.-H., et al., 2008. The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY, 190(6), p 2138-2149.
K.-H. Gartemann, et al., “The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity”, JOURNAL OF BACTERIOLOGY, vol. 190, 2008, pp. 2138-2149.
Gartemann, K.-H., Abt, B., Bekel, T., Burger, A., Engemann, J., Fluegel, M., Gaigalat, L., Goesmann, A., Graefen, I., Kalinowski, J., Kaup, O., Kirchner, O., Krause, L., Linke, B., McHardy, A., Meyer, F., Pohle, S., Rückert, C., Schneiker-Bekel, S., Zellermann, E.-M., Pühler, A., Eichenlaub, R., Kaiser, O., Bartels, D.: The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity. JOURNAL OF BACTERIOLOGY. 190, 2138-2149 (2008).
Gartemann, Karl-Heinz, Abt, Birte, Bekel, Thomas, Burger, Annette, Engemann, Jutta, Fluegel, Monika, Gaigalat, Lars, Goesmann, Alexander, Graefen, Ines, Kalinowski, Jörn, Kaup, Olaf, Kirchner, Oliver, Krause, Lutz, Linke, Burkhard, McHardy, Alice, Meyer, Folker, Pohle, Sandra, Rückert, Christian, Schneiker-Bekel, Susanne, Zellermann, Eva-Maria, Pühler, Alfred, Eichenlaub, Rudolf, Kaiser, Olaf, and Bartels, Daniela. “The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp michiganensis NCPPB382 reveals a large island involved in pathogenicity”. JOURNAL OF BACTERIOLOGY 190.6 (2008): 2138-2149.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
3078 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
Putative two-component system sensor kinase (UNIPROT: A5CTI0)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
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Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative transcriptional regulator, LacI family (UNIPROT: A5CTK1)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative dehydrogenase/oxidoreductase (UNIPROT: A5CM47)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
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Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domai (UNIPROT: A5CP02)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative ABC transporter, ATP-binding protein (UNIPROT: A5CSF6)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative oxidoreductase (UNIPROT: A5CMQ7)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative serine peptidase, family S8 (UNIPROT: A5CTA5)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative peptide ABC transporter, ATP-binding protein (UNIPROT: A5CUN4)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Putative glycosyltransferase (UNIPROT: A5CRE8)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Transport ATP-binding protein CydC (UNIPROT: A5CR86)
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
Organism: Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Download in FASTA format
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Jacques MA, Durand K, Orgeur G, Balidas S, Fricot C, Bonneau S, Quillévéré A, Audusseau C, Olivier V, Grimault V, Mathis R., Appl Environ Microbiol 78(23), 2012
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Characterization of Clavibacter michiganensis subsp. michiganensis strains from recent outbreaks of bacterial wilt and canker in Serbia
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Milijašević-Marčić S, Gartemann KH, Frohwitter J, Eichenlaub R, Todorović B, Rekanović E, Potočnik I., Eur J Plant Pathol 134(4), 2012
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The Clavibacter michiganensis subspecies: molecular investigation of gram-positive bacterial plant pathogens.
Eichenlaub R, Gartemann KH., Annu Rev Phytopathol 49(), 2011
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Genomic and molecular analysis of phage CMP1 from Clavibacter michiganensis subspecies michiganensis.
Wittmann J, Gartemann KH, Eichenlaub R, Dreiseikelmann B., Bacteriophage 1(1), 2011
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Gibson DM, King BC, Hayes ML, Bergstrom GC., Curr Opin Microbiol 14(3), 2011
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Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M., Genes (Basel) 2(4), 2011
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Proteomic approaches to study plant-pathogen interactions.
Quirino BF, Candido ES, Campos PF, Franco OL, Krüger RH., Phytochemistry 71(4), 2010
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The Erwinia amylovora PhoPQ system is involved in resistance to antimicrobial peptide and suppresses gene expression of two novel type III secretion systems.
Nakka S, Qi M, Zhao Y., Microbiol Res 165(8), 2010
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Nakka S, Qi M, Zhao Y., Microbiol Res 165(8), 2010
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Organization of the biosynthetic genes encoding deoxyactagardine B (DAB), a new lantibiotic produced by Actinoplanes liguriae NCIMB41362.
Boakes S, Appleyard AN, Cortés J, Dawson MJ., J Antibiot (Tokyo) 63(7), 2010
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An integrated genomics approach to define niche establishment by Rhodococcus fascians.
Depuydt S, Trenkamp S, Fernie AR, Elftieh S, Renou JP, Vuylsteke M, Holsters M, Vereecke D., Plant Physiol 149(3), 2009
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The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A., J Biotechnol 140(1-2), 2009
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Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A., J Biotechnol 140(1-2), 2009
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Organization of the genes encoding the biosynthesis of actagardine and engineering of a variant generation system.
Boakes S, Cortés J, Appleyard AN, Rudd BA, Dawson MJ., Mol Microbiol 72(5), 2009
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Boakes S, Cortés J, Appleyard AN, Rudd BA, Dawson MJ., Mol Microbiol 72(5), 2009
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Lifestyles of the effector rich: genome-enabled characterization of bacterial plant pathogens.
Collmer A, Schneider DJ, Lindeberg M., Plant Physiol 150(4), 2009
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Collmer A, Schneider DJ, Lindeberg M., Plant Physiol 150(4), 2009
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The putative secreted serine protease Chp-7 is required for full virulence and induction of a nonhost hypersensitive response by Clavibacter michiganensis subsp. sepedonicus.
Nissinen R, Xia Y, Mattinen L, Ishimaru CA, Knudson DL, Knudson SE, Metzler M, Pirhonen M., Mol Plant Microbe Interact 22(7), 2009
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Genomes of model organisms: know thy tools.
Galperin MY., Environ Microbiol 10(6), 2008
PMID: 18474084
Galperin MY., Environ Microbiol 10(6), 2008
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Virulence mechanisms of Gram-positive plant pathogenic bacteria.
Hogenhout SA, Loria R., Curr Opin Plant Biol 11(4), 2008
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Hogenhout SA, Loria R., Curr Opin Plant Biol 11(4), 2008
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Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli.
Zerillo MM, Van Sluys MA, Camargo LE, Monteiro-Vitorello CB., BMC Microbiol 8(), 2008
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Zerillo MM, Van Sluys MA, Camargo LE, Monteiro-Vitorello CB., BMC Microbiol 8(), 2008
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Mycothiol: synthesis, biosynthesis and biological functions of the major low molecular weight thiol in actinomycetes.
Jothivasan VK, Hamilton CJ., Nat Prod Rep 25(6), 2008
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Jothivasan VK, Hamilton CJ., Nat Prod Rep 25(6), 2008
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Activation and manipulation of host responses by a Gram-positive bacterium.
Balaji V, Sessa G., Plant Signal Behav 3(10), 2008
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Balaji V, Sessa G., Plant Signal Behav 3(10), 2008
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Streptomyces scabies 87-22 possesses a functional tomatinase.
Seipke RF, Loria R., J Bacteriol 190(23), 2008
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Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.
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AUTHOR UNKNOWN, 1969
Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library.
Tauch A, Homann I, Mormann S, Ruberg S, Billault A, Bathe B, Brand S, Brockmann-Gretza O, Ruckert C, Schischka N, Wrenger C, Hoheisel J, Mockel B, Huthmacher K, Pfefferle W, Puhler A, Kalinowski J., J. Biotechnol. 95(1), 2002
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Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
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AUTHOR UNKNOWN, 1997
AUTHOR UNKNOWN, 1987
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