Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.

Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Moghadam, Morteza Shojaei; Albersmeier, Andreas; Winkler, AnikaUniBi; Cimmino, Lorenzo; Rise, Kjersti; Hohmann-Marriott, Martin Frank; Kalinowski, JörnUniBi; Rückert, ChristianUniBi ; Wentzel, Alexander; Lale, Rahmi
Erscheinungsjahr
2016
Zeitschriftentitel
BMC Genomics
Band
17
Ausgabe
1
Art.-Nr.
117
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/2901383

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Moghadam MS, Albersmeier A, Winkler A, et al. Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics. 2016;17(1): 117.
Moghadam, M. S., Albersmeier, A., Winkler, A., Cimmino, L., Rise, K., Hohmann-Marriott, M. F., Kalinowski, J., et al. (2016). Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics, 17(1), 117. doi:10.1186/s12864-016-2445-4
Moghadam, Morteza Shojaei, Albersmeier, Andreas, Winkler, Anika, Cimmino, Lorenzo, Rise, Kjersti, Hohmann-Marriott, Martin Frank, Kalinowski, Jörn, Rückert, Christian, Wentzel, Alexander, and Lale, Rahmi. 2016. “Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.”. BMC Genomics 17 (1): 117.
Moghadam, M. S., Albersmeier, A., Winkler, A., Cimmino, L., Rise, K., Hohmann-Marriott, M. F., Kalinowski, J., Rückert, C., Wentzel, A., and Lale, R. (2016). Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics 17:117.
Moghadam, M.S., et al., 2016. Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics, 17(1): 117.
M.S. Moghadam, et al., “Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.”, BMC Genomics, vol. 17, 2016, : 117.
Moghadam, M.S., Albersmeier, A., Winkler, A., Cimmino, L., Rise, K., Hohmann-Marriott, M.F., Kalinowski, J., Rückert, C., Wentzel, A., Lale, R.: Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. BMC Genomics. 17, : 117 (2016).
Moghadam, Morteza Shojaei, Albersmeier, Andreas, Winkler, Anika, Cimmino, Lorenzo, Rise, Kjersti, Hohmann-Marriott, Martin Frank, Kalinowski, Jörn, Rückert, Christian, Wentzel, Alexander, and Lale, Rahmi. “Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.”. BMC Genomics 17.1 (2016): 117.

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9 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Laccases from Marine Organisms and Their Applications in the Biodegradation of Toxic and Environmental Pollutants: a Review.
Theerachat M, Guieysse D, Morel S, Remaud-Siméon M, Chulalaksananukul W., Appl Biochem Biotechnol 187(2), 2019
PMID: 30009326
Comparative genomic analysis of a new tellurite-resistant Psychrobacter strain isolated from the Antarctic Peninsula.
Muñoz-Villagrán CM, Mendez KN, Cornejo F, Figueroa M, Undabarrena A, Morales EH, Arenas-Salinas M, Arenas FA, Castro-Nallar E, Vásquez CC., PeerJ 6(), 2018
PMID: 29479501
Presence of Pathogenic Rickettsiae and Protozoan in Samples of Raw Milk from Cows, Goats, and Sheep.
Cisak E, Zając V, Sroka J, Sawczyn A, Kloc A, Dutkiewicz J, Wójcik-Fatla A., Foodborne Pathog Dis 14(4), 2017
PMID: 28072914
The first acidobacterial laccase-like multicopper oxidase revealed by metagenomics shows high salt and thermo-tolerance.
Ausec L, Berini F, Casciello C, Cretoiu MS, van Elsas JD, Marinelli F, Mandic-Mulec I., Appl Microbiol Biotechnol 101(15), 2017
PMID: 28589226
Identification of Arsenic Resistance Genes from Marine Sediment Metagenome.
Chauhan NS, Nain S, Sharma R., Indian J Microbiol 57(3), 2017
PMID: 28904414

69 References

Daten bereitgestellt von Europe PubMed Central.

Diversity of Psychrophilic Bacteria from Sea Ice - and Glacial Ice Communities
Junge DK, Christner B, Staley DJT., 2011

AUTHOR UNKNOWN, 0
The universal nature of biochemistry.
Pace NR., Proc. Natl. Acad. Sci. U.S.A. 98(3), 2001
PMID: 11158550
Metabolism in bacteria at low temperature: a recent report.
Sengupta D, Chattopadhyay MK., J. Biosci. 38(2), 2013
PMID: 23660675
Cold active pectinases: advancing the food industry to the next generation.
Adapa V, Ramya LN, Pulicherla KK, Rao KR., Appl. Biochem. Biotechnol. 172(5), 2014
PMID: 24390855
Biotechnological uses of enzymes from psychrophiles.
Cavicchioli R, Charlton T, Ertan H, Mohd Omar S, Siddiqui KS, Williams TJ., Microb Biotechnol 4(4), 2011
PMID: 21733127
Marine extremophiles: a source of hydrolases for biotechnological applications.
Dalmaso GZ, Ferreira D, Vermelho AB., Mar Drugs 13(4), 2015
PMID: 25854643
Adaptational properties and applications of cold-active lipases from psychrophilic bacteria.
Maiangwa J, Ali MS, Salleh AB, Rahman RN, Shariff FM, Leow TC., Extremophiles 19(2), 2014
PMID: 25472009
Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters.
Coulon F, McKew BA, Osborn AM, McGenity TJ, Timmis KN., Environ. Microbiol. 9(1), 2007
PMID: 17227422
Laccases: blue enzymes for green chemistry.
Riva S., Trends Biotechnol. 24(5), 2006
PMID: 16574262
Laccase: new functions for an old enzyme.
Mayer AM, Staples RC., Phytochemistry 60(6), 2002
PMID: 12126701
Application of enzymes in the pulp and paper industry
Bajpai P., Biotechnol. Prog. 15(2), 1999
PMID: 10194388
Electron transfer mediator systems for bleaching of paper pulp
Rochefort D, Leech D, Bourbonnais R., 2004
Redox-mediated decolorization of synthetic dyes by fungal laccases.
Claus H, Faber G, Konig H., Appl. Microbiol. Biotechnol. 59(6), 2002
PMID: 12226723
Adsorption and transformation of PAHs from water by a laccase-loading spider-type reactor.
Niu J, Dai Y, Guo H, Xu J, Shen Z., J. Hazard. Mater. 248-249(), 2013
PMID: 23385205

AUTHOR UNKNOWN, 0
Molecular cloning of a copper-dependent laccase from the dye-decolorizing strain Stenotrophomonas maltophilia AAP56.
Galai S, Lucas-Elio P, Marzouki MN, Sanchez-Amat A., J. Appl. Microbiol. 111(6), 2011
PMID: 21973274

AUTHOR UNKNOWN, 0
Laccase versus laccase-like multi-copper oxidase: a comparative study of similar enzymes with diverse substrate spectra.
Reiss R, Ihssen J, Richter M, Eichhorn E, Schilling B, Thony-Meyer L., PLoS ONE 8(6), 2013
PMID: 23755261
Fungal laccases - occurrence and properties.
Baldrian P., FEMS Microbiol. Rev. 30(2), 2006
PMID: 16472305
Fungal laccases: production, function, and applications in food processing, fungal laccases: production, function, and applications in food processing
Brijwani K, Rigdon A, Vadlani PV, Brijwani K, Rigdon A, Vadlani PV., 2010
Fungal laccases
Rivera-Hoyos CM, Morales-Álvarez ED, Poutou-Piñales RA, Pedroza-Rodríguez AM, RodrÍguez-Vázquez R, Delgado-Boada JM., 2013
Bacterial laccases
Sharma P, Goel R, Capalash N., World J. Microbiol. Biotechnol. 23(6), 2007
PMID: IND43919541
Expression of industrially relevant laccases: prokaryotic style.
Santhanam N, Vivanco JM, Decker SR, Reardon KF., Trends Biotechnol. 29(10), 2011
PMID: 21640417
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes.
Ausec L, Zakrzewski M, Goesmann A, Schluter A, Mandic-Mulec I., PLoS ONE 6(10), 2011
PMID: 22022440
Laccase from prokaryotes: a new source for an old enzyme
Singh G, Bhalla A, Kaur P, Capalash N, Sharma P., 2011
Laccases: a never-ending story.
Giardina P, Faraco V, Pezzella C, Piscitelli A, Vanhulle S, Sannia G., Cell. Mol. Life Sci. 67(3), 2009
PMID: 19844659
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM., Int. J. Syst. Evol. Microbiol. 57(Pt 1), 2007
PMID: 17220447
Shifting the genomic gold standard for the prokaryotic species definition.
Richter M, Rossello-Mora R., Proc. Natl. Acad. Sci. U.S.A. 106(45), 2009
PMID: 19855009

AUTHOR UNKNOWN, 0
Microbial degradation of phenol and phenolic derivatives
Krastanov A, Alexieva Z, Yemendzhiev H., 2013

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Arginine-agmatine antiporter in extreme acid resistance in Escherichia coli.
Iyer R, Williams C, Miller C., J. Bacteriol. 185(22), 2003
PMID: 14594828
Protein structure prediction on the Web: a case study using the Phyre server.
Kelley LA, Sternberg MJ., Nat Protoc 4(3), 2009
PMID: 19247286
Diversity and ecology of psychrophilic microorganisms.
Margesin R, Miteva V., Res. Microbiol. 162(3), 2010
PMID: 21187146
Phylogenetic analysis of psychrophilic bacteria isolated from the Japan Trench, including a description of the deep-sea species Psychrobacter pacificensis sp. nov.
Maruyama A, Honda D, Yamamoto H, Kitamura K, Higashihara T., Int. J. Syst. Evol. Microbiol. 50 Pt 2(), 2000
PMID: 10758895
Polyphenol oxidase in Azospirillum lipoferum isolated from rice rhizosphere: Evidence for laccase activity in non-motile strains of Azospirillum lipoferum
Givaudan A, Effosse A, Faure D, Potier P, Bouillant M-L, Bally R., 1993
Wooden art objects and the museum environment: identification and biodegradative characteristics of isolated microflora.
Pangallo D, Simonovicova A, Chovanova K, Ferianc P., Lett. Appl. Microbiol. 45(1), 2007
PMID: 17594466
Bioprospecting a glacial river in Iceland for bacterial biopolymer degraders
Jóelsson JP, Friðjónsdóttir H, Vilhelmsson O., 2013
Diversity of bacterial laccase-like multicopper oxidase genes in forest and grassland Cambisol soil samples
Kellner H, Luis P, Zimdars B, Kiesel B, Buscot F., Soil Biol. Biochem. 40(3), 2008
PMID: IND44014663
Laccases: structure, reactions, distribution.
Claus H., Micron 35(1-2), 2004
PMID: 15036303
Laccase engineering by rational and evolutionary design.
Pardo I, Camarero S., Cell. Mol. Life Sci. 72(5), 2015
PMID: 25586560
Characterization of yellow bacterial laccase SmLac/role of redox mediators in azo dye decolorization
Galai S, Korri-Youssoufi H, Marzouki MN., 2014

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
16S/23S rRNA sequencing
Lane DJ., 1991
A greedy algorithm for aligning DNA sequences.
Zhang Z, Schwartz S, Wagner L, Miller W., J. Comput. Biol. 7(1-2), 2000
PMID: 10890397

AUTHOR UNKNOWN, 0
Consed: a graphical editor for next-generation sequencing.
Gordon D, Green P., Bioinformatics 29(22), 2013
PMID: 23995391
Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Schattner P, Brooks AN, Lowe TM., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980563
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW., Nucleic Acids Res. 35(9), 2007
PMID: 17452365

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
SignalP 4.0: discriminating signal peptides from transmembrane regions.
Petersen TN, Brunak S, von Heijne G, Nielsen H., Nat. Methods 8(10), 2011
PMID: 21959131
Combined prediction of Tat and Sec signal peptides with hidden Markov models.
Bagos PG, Nikolaou EP, Liakopoulos TD, Tsirigos KD., Bioinformatics 26(22), 2010
PMID: 20847219
Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.
Kall L, Krogh A, Sonnhammer EL., Nucleic Acids Res. 35(Web Server issue), 2007
PMID: 17483518
Improved media for growing plasmid and cosmid clones
Tartof KD, Hobbs CA., 1987
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