Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy

Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Pühler A, Kalinowski J (2004)
J Biotechnol 112(1-2): 177-193.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA
Autor*in
Hansmeier, Nicole; Bartels, Frank Wilco; Ros, Robert; Anselmetti, DarioUniBi ; Tauch, AndreasUniBi; Pühler, AlfredUniBi ; Kalinowski, JörnUniBi
Abstract / Bemerkung
The structural S-layer proteins of 28 different Corynebacterium glutamicum isolates have been analyzed systematically. Treatment of whole C. glutamicum cells with detergents resulted in the isolation of S-layer proteins with different apparent molecular masses, ranging in size from 55 to 66 kDa. The S-layer genes analyzed were characterized by coding regions ranging from 1473 to 1533 nucleotides coding for S-layer proteins with a size of 490-510 amino acids. Using PCR techniques, the corresponding S-layer genes of the 28 C. glutamicum isolates were all cloned and sequenced. The deduced amino acid sequences of the S-layer proteins showed identities between 69 and 98% and could be grouped into five phylogenetic classes. Furthermore, sequence analyses indicated that the S-layer proteins of the analyzed C. glutamicum isolates exhibit a mosaic structure of highly conserved and highly variable regions. Several conserved regions were assumed to play a key role in the formation of the C. glutamicum S-layers. Especially the N-terminal signal peptides and the C-terminal anchor sequences of the S-layer proteins showed a nearly perfect amino acid sequence conservation. Analyses by atomic force microscopy revealed a committed hexagonal structure. Morphological diversity of the C. glutamicum S-layers was observed in a class-specific unit cell dimension (ranging from 15.2 to 17.4 nm), which correlates with the sequence similarity-based classification. It could be demonstrated that differences in the primary structure of the S-layer proteins were reflected by the S-layer morphology. (C) 2004 Elsevier B.V. All rights reserved.
Stichworte
S-layer protein classification; Diversity; Cell envelope; Unit cell dimension; Surface-layer; Hexagonal symmetry; Corynebacterium glutamicum
Erscheinungsjahr
2004
Zeitschriftentitel
J Biotechnol
Band
112
Ausgabe
1-2
Seite(n)
177-193
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/1773130

Zitieren

Hansmeier N, Bartels FW, Ros R, et al. Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol. 2004;112(1-2):177-193.
Hansmeier, N., Bartels, F. W., Ros, R., Anselmetti, D., Tauch, A., Pühler, A., & Kalinowski, J. (2004). Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol, 112(1-2), 177-193. https://doi.org/10.1016/j.jbiotec.2004.03.020
Hansmeier, Nicole, Bartels, Frank Wilco, Ros, Robert, Anselmetti, Dario, Tauch, Andreas, Pühler, Alfred, and Kalinowski, Jörn. 2004. “Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy”. J Biotechnol 112 (1-2): 177-193.
Hansmeier, N., Bartels, F. W., Ros, R., Anselmetti, D., Tauch, A., Pühler, A., and Kalinowski, J. (2004). Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol 112, 177-193.
Hansmeier, N., et al., 2004. Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol, 112(1-2), p 177-193.
N. Hansmeier, et al., “Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy”, J Biotechnol, vol. 112, 2004, pp. 177-193.
Hansmeier, N., Bartels, F.W., Ros, R., Anselmetti, D., Tauch, A., Pühler, A., Kalinowski, J.: Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy. J Biotechnol. 112, 177-193 (2004).
Hansmeier, Nicole, Bartels, Frank Wilco, Ros, Robert, Anselmetti, Dario, Tauch, Andreas, Pühler, Alfred, and Kalinowski, Jörn. “Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy”. J Biotechnol 112.1-2 (2004): 177-193.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-09-06T08:48:07Z
MD5 Prüfsumme
86cfa8227ec5be42c4d8dcdd47eac18d


16 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Effects of EGTA on cell surface structures of Corynebacterium glutamicum.
Theresia NM, Aida K, Takada A, Iwai N, Wachi M., Arch Microbiol 200(2), 2018
PMID: 29075867
Corynebacterium glutamicum possesses β-N-acetylglucosaminidase.
Matano C, Kolkenbrock S, Hamer SN, Sgobba E, Moerschbacher BM, Wendisch VF., BMC Microbiol 16(1), 2016
PMID: 27492186
Double mutation of cell wall proteins CspB and PBP1a increases secretion of the antibody Fab fragment from Corynebacterium glutamicum.
Matsuda Y, Itaya H, Kitahara Y, Theresia NM, Kutukova EA, Yomantas YA, Date M, Kikuchi Y, Wachi M., Microb Cell Fact 13(1), 2014
PMID: 24731213
Corynebacterium diphtheriae invasion-associated protein (DIP1281) is involved in cell surface organization, adhesion and internalization in epithelial cells.
Ott L, Höller M, Gerlach RG, Hensel M, Rheinlaender J, Schäffer TE, Burkovski A., BMC Microbiol 10(), 2010
PMID: 20051108
The regulator RamA influences cmytA transcription and cell morphology of Corynebacterium ammoniagenes.
Lee SM, Lee JY, Park KJ, Park JS, Ha UH, Kim Y, Lee HS., Curr Microbiol 61(2), 2010
PMID: 20107993
Adaptation of Corynebacterium glutamicum to salt-stress conditions.
Fränzel B, Trötschel C, Rückert C, Kalinowski J, Poetsch A, Wolters DA., Proteomics 10(3), 2010
PMID: 19950167
Identification of new secreted proteins and secretion of heterologous amylase by C. glutamicum.
Suzuki N, Watanabe K, Okibe N, Tsuchida Y, Inui M, Yukawa H., Appl Microbiol Biotechnol 82(3), 2009
PMID: 19066885
Systems biology for industrial strains and fermentation processes--example: amino acids.
Takors R, Bathe B, Rieping M, Hans S, Kelle R, Huthmacher K., J Biotechnol 129(2), 2007
PMID: 17367886
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum.
Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D., Microbiol Mol Biol Rev 71(3), 2007
PMID: 17804669
Emerging Corynebacterium glutamicum systems biology.
Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W., J Biotechnol 124(1), 2006
PMID: 16406159

61 References

Daten bereitgestellt von Europe PubMed Central.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Bacterial S-layers
Beveridge, Curr. Opin. Struct. Biol. 4(), 1994
Functions of S-layers.
Beveridge TJ, Pouwels PH, Sara M, Kotiranta A, Lounatmaa K, Kari K, Kerosuo E, Haapasalo M, Egelseer EM, Schocher I, Sleytr UB, Morelli L, Callegari ML, Nomellini JF, Bingle WH, Smit J, Leibovitz E, Lemaire M, Miras I, Salamitou S, Beguin P, Ohayon H, Gounon P, Matuschek M, Koval SF., FEMS Microbiol. Rev. 20(1-2), 1997
PMID: 9276929
Expression, secretion and antigenic variation of bacterial S-layer proteins.
Boot HJ, Pouwels PH., Mol. Microbiol. 21(6), 1996
PMID: 8898381
Molecular characterization of the surface layer proteins from Clostridium difficile.
Calabi E, Ward S, Wren B, Paxton T, Panico M, Morris H, Dell A, Dougan G, Fairweather N., Mol. Microbiol. 40(5), 2001
PMID: 11401722
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.
Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J., Nucleic Acids Res. 31(22), 2003
PMID: 14602910
The S-layer protein of Corynebacterium glutamicum is anchored to the cell wall by its C-terminal hydrophobic domain.
Chami M, Bayan N, Peyret JL, Gulik-Krzywicki T, Leblon G, Shechter E., Mol. Microbiol. 23(3), 1997
PMID: 9044282
Observing single biomolecules at work with the atomic force microscope.
Engel A, Muller DJ., Nat. Struct. Biol. 7(9), 2000
PMID: 10966636
A deletion in the sapA homologue cluster is responsible for the loss of the S-layer in Campylobacter fetus strain TK.
Fujita M, Moriya T, Fujimoto S, Hara N, Amako K., Arch. Microbiol. 167(4), 1997
PMID: 9075619
GOR method for predicting protein secondary structure from amino acid sequence.
Garnier J, Gibrat JF, Robson B., Meth. Enzymol. 266(), 1996
PMID: 8743705
Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants.
Grant SG, Jessee J, Bloom FR, Hanahan D., Proc. Natl. Acad. Sci. U.S.A. 87(12), 1990
PMID: 2162051
Proteome analysis of Corynebacterium glutamicum.
Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Puhler A, Bendt AK, Kramer R, Burkovski A., Electrophoresis 22(9), 2001
PMID: 11425227
Industrial production of amino acids by coryneform bacteria.
Hermann T., J. Biotechnol. 104(1-3), 2003
PMID: 12948636
The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.
Ikeda M, Nakagawa S., Appl. Microbiol. Biotechnol. 62(2-3), 2003
PMID: 12743753
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626
Protoplast transformation of glutamate-producing bacteria with plasmid DNA.
Katsumata R, Ozaki A, Oka T, Furuya A., J. Bacteriol. 159(1), 1984
PMID: 6145700
A simple method for displaying the hydropathic character of a protein.
Kyte J, Doolittle RF., J. Mol. Biol. 157(1), 1982
PMID: 7108955
Atomic force microscopy of long DNA: imaging in air and under water.
Lyubchenko Y, Shlyakhtenko L, Harrington R, Oden P, Lindsay S., Proc. Natl. Acad. Sci. U.S.A. 90(6), 1993
PMID: 8460119
Bacterial glycoproteins.
Messner P., Glycoconj. J. 14(1), 1997
PMID: 9076508
Biochemistry of S-layers.
Messner P, Allmaier G, Schaffer C, Wugeditsch T, Lortal S, Konig H, Niemetz R, Dorner M., FEMS Microbiol. Rev. 20(1-2), 1997
PMID: 9276927
Crystalline bacterial cell-surface layers.
Messner P, Sleytr UB., Adv. Microb. Physiol. 33(), 1992
PMID: 1636510
Tapping-mode atomic force microscopy produces faithful high-resolution images of protein surfaces.
Moller C, Allen M, Elings V, Engel A, Muller DJ., Biophys. J. 77(2), 1999
PMID: 10423460
Controlled unzipping of a bacterial surface layer with atomic force microscopy.
Muller DJ, Baumeister W, Engel A., Proc. Natl. Acad. Sci. U.S.A. 96(23), 1999
PMID: 10557292
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G., Int J Neural Syst 8(5-6), 1997
PMID: 10065837
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Nishio Y, Nakamura Y, Kawarabayasi Y, Usuda Y, Kimura E, Sugimoto S, Matsui K, Yamagishi A, Kikuchi H, Ikeo K, Gojobori T., Genome Res. 13(7), 2003
PMID: 12840036
Probability-based protein identification by searching sequence databases using mass spectrometry data.
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS., Electrophoresis 20(18), 1999
PMID: 10612281
Tetrabrachion: a filamentous archaebacterial surface protein assembly of unusual structure and extreme stability.
Peters J, Nitsch M, Kuhlmorgen B, Golbik R, Lupas A, Kellermann J, Engelhardt H, Pfander JP, Muller S, Goldie K., J. Mol. Biol. 245(4), 1995
PMID: 7837271
Characterization of the cspB gene encoding PS2, an ordered surface-layer protein in Corynebacterium glutamicum.
Peyret JL, Bayan N, Joliff G, Gulik-Krzywicki T, Mathieu L, Schechter E, Leblon G., Mol. Microbiol. 9(1), 1993
PMID: 8412676
II. Fine structure of S-layers
Rachel, FEMS Microbiol. Rev. 20(), 1997

AUTHOR UNKNOWN, 0
Molecular sieving through S layers of Bacillus stearothermophilus strains.
Sara M, Sleytr UB., J. Bacteriol. 169(9), 1987
PMID: 2442137
Crystalline bacterial cell surface layers (S-layers): from cell structure to biomimetics.
Sara M, Sleytr UB., Prog. Biophys. Mol. Biol. 65(1-2), 1996
PMID: 9029942
S-Layer proteins.
Sara M, Sleytr UB., J. Bacteriol. 182(4), 2000
PMID: 10648507
Principles of organization in S layers.
Saxton WO, Baumeister W., J. Mol. Biol. 187(2), 1986
PMID: 3701866
Prokaryotic glycosylation.
Schaffer C, Graninger M, Messner P., Proteomics 1(2), 2001
PMID: 11680871
Charting and unzipping the surface layer of Corynebacterium glutamicum with the atomic force microscope.
Scheuring S, Stahlberg H, Chami M, Houssin C, Rigaud JL, Engel A., Mol. Microbiol. 44(3), 2002
PMID: 11994150
Basic and applied S-layer research: an overview
Sleytr, FEMS Microbiol. Rev. 20(), 1997
Bacterial S-layers.
Sleytr UB, Beveridge TJ., Trends Microbiol. 7(6), 1999
PMID: 10366863
Crystalline surface layers on bacteria.
Sleytr UB, Messner P., Annu. Rev. Microbiol. 37(), 1983
PMID: 6416145
New findings of S-layers among cyanobacteria
Smajs, Algol. Stud. 94(), 1999
S-layers on cell walls of cyanobacteria.
Smarda J, Smajs D, Komrska J, Krzyzanek V., Micron 33(3), 2002
PMID: 11742749
Identification of common molecular subsequences.
Smith TF, Waterman MS., J. Mol. Biol. 147(1), 1981
PMID: 7265238
Characterization of pGA1, a new plasmid from Corynebacterium glutamicum LP-6.
Sonnen H, Thierbach G, Kautz S, Kalinowski J, Schneider J, Puhler A, Kutzner HJ., Gene 107(1), 1991
PMID: 1660431
S-layer protein production by Corynebacterium strains is dependent on the carbon source.
Soual-Hoebeke E, de Sousa-D'Auria C, Chami M, Baucher MF, Guyonvarch A, Bayan N, Salim K, Leblon G., Microbiology (Reading, Engl.) 145 ( Pt 12)(), 1999
PMID: 10627038
Proposal for a new hierarchic classification system, Actinobacteria classis nov
Stackebrandt, Int. J. Syst. Bacteriol. 47(), 1997
The Staden sequence analysis package.
Staden R., Mol. Biotechnol. 5(3), 1996
PMID: 8837029
Primary structure and glycosylation of the S-layer protein of Haloferax volcanii.
Sumper M, Berg E, Mengele R, Strobel I., J. Bacteriol. 172(12), 1990
PMID: 2123862
Isolation of a tetracycline resistance plasmid from a glutamate-producing corynebacterium, Corynebacterium melassecola
Takeda, J. Ferment. Bioeng. 70(), 1990
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG., Nucleic Acids Res. 25(24), 1997
PMID: 9396791
Rearrangement of sapA homologs with conserved and variable regions in Campylobacter fetus.
Tummuru MK, Blaser MJ., Proc. Natl. Acad. Sci. U.S.A. 90(15), 1993
PMID: 8346244
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 15288952
PubMed | Europe PMC

Suchen in

Google Scholar