Emerging Corynebacterium glutamicum systems biology

Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W (2006)
Journal of Biotechnology 124(1): 74-92.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Wendisch, Volker F.UniBi ; Bott, M.; Kalinowski, JörnUniBi; Oldiges, M.; Wiechert, W.
Abstract / Bemerkung
Corynebacterium glutamicum is widely used for the biotechnological production of amino acids. Amino acid producing strains have been improved classically by mutagenesis and screening as well as in a rational manner using recombinant DNA technology. Metabolic flux analysis may be viewed as the first systems approach to C glutamicum physiology since it combines isotope labeling data with metabolic network models of the biosynthetic and central metabolic pathways. However, only the complete genome sequence of C. glutamicum and post-genomics methods such as transcriptomics and proteomics have allowed characterizing metabolic and regulatory properties of this bacterium on a truly global level. Besides transcriptomics, and proteomics, metabolomics, and modeling approaches have now been established. Systems biology, which uses systematic genomic, proteomic and metabolomic technologies with the final aim of constructing comprehensive and predictive models of complex biological systems, is emerging for C. glutamicum. We will present current developments that advanced our insight into fundamental biology of C. glutamicum and that in the future will enable novel biotechnological applications for the improvement of amino acid production. (c) 2005 Elsevier B.V. All rights reserved.
Stichworte
l-lysine production; sensor reactor approach; complete genome sequence; mathematical modeling; metabolic flux analysis; metabolite profiling; metabolomics; pyruvate-carboxylase; saccharomyces-cerevisiae; escherichia-coli; mass-spectrometry; in-vivo kinetics; white biotechnology; systems biology; corynebacterium glutamicum; amino acid production; genomics; strain development; transcriptomics; proteomics; DNA microarray; metabolic flux analysis; amino-acid production
Erscheinungsjahr
2006
Zeitschriftentitel
Journal of Biotechnology
Band
124
Ausgabe
1
Seite(n)
74-92
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/1895365

Zitieren

Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W. Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology. 2006;124(1):74-92.
Wendisch, V. F., Bott, M., Kalinowski, J., Oldiges, M., & Wiechert, W. (2006). Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology, 124(1), 74-92. https://doi.org/10.1016/j.jbiotec.2005.12.002
Wendisch, Volker F., Bott, M., Kalinowski, Jörn, Oldiges, M., and Wiechert, W. 2006. “Emerging Corynebacterium glutamicum systems biology”. Journal of Biotechnology 124 (1): 74-92.
Wendisch, V. F., Bott, M., Kalinowski, J., Oldiges, M., and Wiechert, W. (2006). Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology 124, 74-92.
Wendisch, V.F., et al., 2006. Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology, 124(1), p 74-92.
V.F. Wendisch, et al., “Emerging Corynebacterium glutamicum systems biology”, Journal of Biotechnology, vol. 124, 2006, pp. 74-92.
Wendisch, V.F., Bott, M., Kalinowski, J., Oldiges, M., Wiechert, W.: Emerging Corynebacterium glutamicum systems biology. Journal of Biotechnology. 124, 74-92 (2006).
Wendisch, Volker F., Bott, M., Kalinowski, Jörn, Oldiges, M., and Wiechert, W. “Emerging Corynebacterium glutamicum systems biology”. Journal of Biotechnology 124.1 (2006): 74-92.

57 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Metabolic engineering of Corynebacterium glutamicum for fermentative production of chemicals in biorefinery.
Baritugo KA, Kim HT, David Y, Choi JI, Hong SH, Jeong KJ, Choi JH, Joo JC, Park SJ., Appl Microbiol Biotechnol 102(9), 2018
PMID: 29557518
Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis.
Lange J, Münch E, Müller J, Busche T, Kalinowski J, Takors R, Blombach B., Genes (Basel) 9(6), 2018
PMID: 29899275
Transport and metabolic engineering of the cell factory Corynebacterium glutamicum.
Pérez-García F, Wendisch VF., FEMS Microbiol Lett 365(16), 2018
PMID: 29982619
Comparative analysis of the Corynebacterium glutamicum transcriptome in response to changes in dissolved oxygen levels.
Liu X, Yang S, Wang F, Dai X, Yang Y, Bai Z., J Ind Microbiol Biotechnol 44(2), 2017
PMID: 27844170
Valorization of pyrolysis water: a biorefinery side stream, for 1,2-propanediol production with engineered Corynebacterium glutamicum.
Lange J, Müller F, Bernecker K, Dahmen N, Takors R, Blombach B., Biotechnol Biofuels 10(), 2017
PMID: 29201141
Regulons of global transcription factors in Corynebacterium glutamicum.
Toyoda K, Inui M., Appl Microbiol Biotechnol 100(1), 2016
PMID: 26496920
Engineering Corynebacterium glutamicum for fast production of L-lysine and L-pipecolic acid.
Pérez-García F, Peters-Wendisch P, Wendisch VF., Appl Microbiol Biotechnol 100(18), 2016
PMID: 27345060
Chassis organism from Corynebacterium glutamicum--a top-down approach to identify and delete irrelevant gene clusters.
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S., Biotechnol J 10(2), 2015
PMID: 25139579
Beyond growth rate 0.6: What drives Corynebacterium glutamicum to higher growth rates in defined medium.
Unthan S, Grünberger A, van Ooyen J, Gätgens J, Heinrich J, Paczia N, Wiechert W, Kohlheyer D, Noack S., Biotechnol Bioeng 111(2), 2014
PMID: 23996851
High-level secretory production of recombinant single-chain variable fragment (scFv) in Corynebacterium glutamicum.
Yim SS, An SJ, Choi JW, Ryu AJ, Jeong KJ., Appl Microbiol Biotechnol 98(1), 2014
PMID: 24380967
Cell physiology of the biotechnological relevant bacterium Bacillus pumilus-an omics-based approach.
Handtke S, Volland S, Methling K, Albrecht D, Becher D, Nehls J, Bongaerts J, Maurer KH, Lalk M, Liesegang H, Voigt B, Daniel R, Hecker M., J Biotechnol 192 Pt A(), 2014
PMID: 25281541
Bio-based production of organic acids with Corynebacterium glutamicum.
Wieschalka S, Blombach B, Bott M, Eikmanns BJ., Microb Biotechnol 6(2), 2013
PMID: 23199277
Corynebacterium glutamicum promoters: a practical approach.
Pátek M, Holátko J, Busche T, Kalinowski J, Nešvera J., Microb Biotechnol 6(2), 2013
PMID: 23305350
Kinetic and thermodynamic characterization of lysine production process in Brevibacterium lactofermentum.
Ahmed S, Afzal M, Rajoka MI., Appl Biochem Biotechnol 170(1), 2013
PMID: 23475286
Systems metabolic engineering of Corynebacterium glutamicum for production of the chemical chaperone ectoine.
Becker J, Schäfer R, Kohlstedt M, Harder BJ, Borchert NS, Stöveken N, Bremer E, Wittmann C., Microb Cell Fact 12(), 2013
PMID: 24228689
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J., BMC Genomics 14(), 2013
PMID: 24341750
Genome shuffling improves thermotolerance and glutamic acid production of Corynebacteria glutamicum.
Zheng P, Liu M, Liu XD, Du QY, Ni Y, Sun ZH., World J Microbiol Biotechnol 28(3), 2012
PMID: 22805825
Genome shuffling improves thermotolerance and glutamic acid production of Corynebacteria glutamicum
Zheng P, Liu M, Liu Xd, Du Qy, Ni Y, Sun Zh., World J Microbiol Biotechnol 28(3), 2012
PMID: IND44746219
Tools for genetic manipulations in Corynebacterium glutamicum and their applications.
Nešvera J, Pátek M., Appl Microbiol Biotechnol 90(5), 2011
PMID: 21519933
Post-genomics of Neisseria meningitidis: an update.
Bernardini G, Braconi D, Lusini P, Santucci A., Expert Rev Proteomics 8(6), 2011
PMID: 22087663
Studies on substrate utilisation in L-valine-producing Corynebacterium glutamicum strains deficient in pyruvate dehydrogenase complex.
Bartek T, Rudolf C, Kerssen U, Klein B, Blombach B, Lang S, Eikmanns BJ, Oldiges M., Bioprocess Biosyst Eng 33(7), 2010
PMID: 20204663
Microbial systems engineering: first successes and the way ahead.
Dietz S, Panke S., Bioessays 32(4), 2010
PMID: 20217841
Metabolic quenching of Corynebacterium glutamicum: efficiency of methods and impact of cold shock.
Wellerdiek M, Winterhoff D, Reule W, Brandner J, Oldiges M., Bioprocess Biosyst Eng 32(5), 2009
PMID: 19050933
Postgenomics of Neisseria meningitidis: an update.
Bernardini G, Braconi D, Lusini P, Santucci A., Expert Rev Proteomics 6(2), 2009
PMID: 19385941
Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.
Neuweger H, Persicke M, Albaum SP, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A., BMC Syst Biol 3(), 2009
PMID: 19698148
Linking Cytoscape and the corynebacterial reference database CoryneRegNet.
Baumbach J, Apeltsin L., BMC Genomics 9(), 2008
PMID: 18426593
Bacterial membrane proteomics.
Poetsch A, Wolters D., Proteomics 8(19), 2008
PMID: 18780352
Microbial metabolomics: past, present and future methodologies.
Mashego MR, Rumbold K, De Mey M, Vandamme E, Soetaert W, Heijnen JJ., Biotechnol Lett 29(1), 2007
PMID: 17091378
Metabolic flux analysis at ultra short time scale: isotopically non-stationary 13C labeling experiments.
Nöh K, Grönke K, Luo B, Takors R, Oldiges M, Wiechert W., J Biotechnol 129(2), 2007
PMID: 17207877
Systems biology for industrial strains and fermentation processes--example: amino acids.
Takors R, Bathe B, Rieping M, Hans S, Kelle R, Huthmacher K., J Biotechnol 129(2), 2007
PMID: 17367886
Towards dynamic metabolic network measurements by multi-dimensional NMR-based fluxomics.
Sekiyama Y, Kikuchi J., Phytochemistry 68(16-18), 2007
PMID: 17532017
Metabolic flux engineering of L-lysine production in Corynebacterium glutamicum--over expression and modification of G6P dehydrogenase.
Becker J, Klopprogge C, Herold A, Zelder O, Bolten CJ, Wittmann C., J Biotechnol 132(2), 2007
PMID: 17624457
Prospects for a bio-based succinate industry.
McKinlay JB, Vieille C, Zeikus JG., Appl Microbiol Biotechnol 76(4), 2007
PMID: 17609945
Metabolomics: current state and evolving methodologies and tools.
Oldiges M, Lütz S, Pflug S, Schroer K, Stein N, Wiendahl C., Appl Microbiol Biotechnol 76(3), 2007
PMID: 17665194
CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A., BMC Syst Biol 1(), 2007
PMID: 18034885

149 References

Daten bereitgestellt von Europe PubMed Central.

Systems biology: its practice and challenges.
Aderem A., Cell 121(4), 2005
PMID: 15907465
Integration of gene expression data into genome-scale metabolic models.
Akesson M, Forster J, Nielsen J., Metab. Eng. 6(4), 2004
PMID: 15491858
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
Allen J, Davey HM, Broadhurst D, Heald JK, Rowland JJ, Oliver SG, Kell DB., Nat. Biotechnol. 21(6), 2003
PMID: 12740584
Towards a phosphoproteome map of Corynebacterium glutamicum.
Bendt AK, Burkovski A, Schaffer S, Bott M, Farwick M, Hermann T., Proteomics 3(8), 2003
PMID: 12923788
Towards cellular systems in 4D.
Bork P, Serrano L., Cell 121(4), 2005
PMID: 15907464
Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope
Brand, Arch. Microbiol. 10(), 2003
Impact of 'ome' analyses on inverse metabolic engineering.
Bro C, Nielsen J., Metab. Eng. 6(3), 2004
PMID: 15256210

Brock, 1999
New bioreactor-coupled rapid stopped-flow sampling technique for measurements of metabolite dynamics on a subsecond time scale.
Buziol S, Bashir I, Baumeister A, Claassen W, Noisommit-Rizzi N, Mailinger W, Reuss M., Biotechnol. Bioeng. 80(6), 2002
PMID: 12378604
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.
Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J., Nucleic Acids Res. 31(22), 2003
PMID: 14602910
Dynamic modeling of the central carbon metabolism of Escherichia coli.
Chassagnole C, Noisommit-Rizzi N, Schmid JW, Mauch K, Reuss M., Biotechnol. Bioeng. 79(1), 2002
PMID: 17590932
Isotopomer analysis using GC-MS.
Christensen B, Nielsen J., Metab. Eng. 1(4), 1999
PMID: 10937821
Metabolic flux analysis of Corynebacterium glutamicum
de, 2000
Serial flux mapping of Corynebacterium glutamicum during fed-batch L-lysine production using the sensor reactor approach.
Drysch A, El Massaoudi M, Wiechert W, de Graaf AA, Takors R., Biotechnol. Bioeng. 85(5), 2004
PMID: 14760690
Metabolic modelling of microbes: the flux-balance approach.
Edwards JS, Covert M, Palsson B., Environ. Microbiol. 4(3), 2002
PMID: 12000313
Central metabolism: tricarboxylic acid cycle and anaplerotic reactions
Eikmanns, 2005
Modelling cellular behaviour.
Endy D, Brent R., Nature 409(6818), 2001
PMID: 11201753
The transcriptional activator ClgR controls transcription of genes involved in proteolysis and DNA repair in Corynebacterium glutamicum.
Engels S, Ludwig C, Schweitzer JE, Mack C, Bott M, Schaffer S., Mol. Microbiol. 57(2), 2005
PMID: 15978086
Metabolite profiling: from diagnostics to systems biology.
Fernie AR, Trethewey RN, Krotzky AJ, Willmitzer L., Nat. Rev. Mol. Cell Biol. 5(9), 2004
PMID: 15340383
Metabolite profiling for plant functional genomics.
Fiehn O, Kopka J, Dormann P, Altmann T, Trethewey RN, Willmitzer L., Nat. Biotechnol. 18(11), 2000
PMID: 11062433
A novel genetic system to detect protein-protein interactions.
Fields S, Song O., Nature 340(6230), 1989
PMID: 2547163
Functional organization of the yeast proteome by systematic analysis of protein complexes.
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, Superti-Furga G., Nature 415(6868), 2002
PMID: 11805826

AUTHOR UNKNOWN, 0
RamB, a novel transcriptional regulator of genes involved in acetate metabolism of Corynebacterium glutamicum.
Gerstmeir R, Cramer A, Dangel P, Schaffer S, Eikmanns BJ., J. Bacteriol. 186(9), 2004
PMID: 15090522
Acetate metabolism and its regulation in Corynebacterium glutamicum.
Gerstmeir R, Wendisch VF, Schnicke S, Ruan H, Farwick M, Reinscheid D, Eikmanns BJ., J. Biotechnol. 104(1-3), 2003
PMID: 12948633
Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.
Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Puhler A, Kalinowski J., J. Biotechnol. 112(1-2), 2004
PMID: 15288952

AUTHOR UNKNOWN, 0
Investigating the dynamic behavior of biochemical networks using model families.
Haunschild MD, Freisleben B, Takors R, Wiechert W., Bioinformatics 21(8), 2004
PMID: 15604106
Linear constraint relations in biochemical reaction systems: I. Classification of the calculability and the balanceability of conversion rates.
van der Heijden RT, Heijnen JJ, Hellinga C, Romein B, Luyben KC., Biotechnol. Bioeng. 43(1), 1994
PMID: 18613305

Heinrich, 1996
Industrial production of amino acids by coryneform bacteria.
Hermann T., J. Biotechnol. 104(1-3), 2003
PMID: 12948636
Two-dimensional electrophoretic analysis of Corynebacterium glutamicum membrane fraction and surface proteins.
Hermann T, Finkemeier M, Pfefferle W, Wersch G, Kramer R, Burkovski A., Electrophoresis 21(3), 2000
PMID: 10726773
Proteome analysis of Corynebacterium glutamicum.
Hermann T, Pfefferle W, Baumann C, Busker E, Schaffer S, Bott M, Sahm H, Dusch N, Kalinowski J, Puhler A, Bendt AK, Kramer R, Burkovski A., Electrophoresis 22(9), 2001
PMID: 11425227
Mapping and identification of Corynebacterium glutamicum proteins by two-dimensional gel electrophoresis and microsequencing.
Hermann T, Wersch G, Uhlemann EM, Schmid R, Burkovski A., Electrophoresis 19(18), 1998
PMID: 9932818
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, Jespersen H, Podtelejnikov A, Nielsen E, Crawford J, Poulsen V, Sorensen BD, Matthiesen J, Hendrickson RC, Gleeson F, Pawson T, Moran MF, Durocher D, Mann M, Hogue CW, Figeys D, Tyers M., Nature 415(6868), 2002
PMID: 11805837
Systems biology and new technologies enable predictive and preventative medicine.
Hood L, Heath JR, Phelps ME, Lin B., Science 306(5696), 2004
PMID: 15499008
The impact of systems approaches on biological problems in drug discovery.
Hood L, Perlmutter RM., Nat. Biotechnol. 22(10), 2004
PMID: 15470453
PorH, a new channel-forming protein present in the cell wall of Corynebacterium efficiens and Corynebacterium callunae.
Hunten P, Schiffler B, Lottspeich F, Benz R., Microbiology (Reading, Engl.) 151(Pt 7), 2005
PMID: 16000733
Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genome-wide transcriptional profiling.
Huser AT, Chassagnole C, Lindley ND, Merkamm M, Guyonvarch A, Elisakova V, Patek M, Kalinowski J, Brune I, Puhler A, Tauch A., Appl. Environ. Microbiol. 71(6), 2005
PMID: 15933028
A new approach to decoding life: systems biology.
Ideker T, Galitski T, Hood L., Annu Rev Genomics Hum Genet 2(), 2001
PMID: 11701654
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
Ikeda H, Ishikawa J, Hanamoto A, Shinose M, Kikuchi H, Shiba T, Sakaki Y, Hattori M, Omura S., Nat. Biotechnol. 21(5), 2003
PMID: 12692562
The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses.
Ishige T, Krause M, Bott M, Wendisch VF, Sahm H., J. Bacteriol. 185(15), 2003
PMID: 12867461
The genomes of amino acid-producing corynebacteria
Kalinowski, 2005
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626
Metabolic control theory: its role in microbiology and biotechnology
Kell, FEMS Microbiol. Rev. 39(), 1986
The meaning of systems biology.
Kirschner MW., Cell 121(4), 2005
PMID: 15907462
Minimal cut sets in biochemical reaction networks.
Klamt S, Gilles ED., Bioinformatics 20(2), 2004
PMID: 14734314
In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome.
Kromer JO, Sorgenfrei O, Klopprogge K, Heinzle E, Wittmann C., J. Bacteriol. 186(6), 2004
PMID: 14996808
Global expression profiling and physiological characterization of Corynebacterium glutamicum grown in the presence of L-valine.
Lange C, Rittmann D, Wendisch VF, Bott M, Sahm H., Appl. Environ. Microbiol. 69(5), 2003
PMID: 12732517
Improved rapid sampling for in vivo kinetics of intracellular metabolites in Saccharomyces cerevisiae.
Lange HC, Eman M, van Zuijlen G, Visser D, van Dam JC, Frank J, de Mattos MJ, Heijnen JJ., Biotechnol. Bioeng. 75(4), 2001
PMID: 11668440
Network component analysis: reconstruction of regulatory signals in biological systems.
Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP., Proc. Natl. Acad. Sci. U.S.A. 100(26), 2003
PMID: 14673099
Modelling and analysis of the metabolic network dynamics in a Corynebacterium glutamicum l-valine production strain
Magnus, 2005
Response of the central metabolism in Corynebacterium glutamicum to the use of an NADH-dependent glutamate dehydrogenase.
Marx A, Eikmanns BJ, Sahm H, de Graaf AA, Eggeling L., Metab. Eng. 1(1), 1999
PMID: 10935753
Metabolic phenotype of phosphoglucose isomerase mutants of Corynebacterium glutamicum.
Marx A, Hans S, Mockel B, Bathe B, de Graaf AA, McCormack AC, Stapleton C, Burke K, O'Donohue M, Dunican LK., J. Biotechnol. 104(1-3), 2003
PMID: 12948638
Response of the central metabolism of Corynebacterium glutamicum to different flux burdens.
Marx A, Striegel K, de Graaf AA, Sahm H, Eggeling L., Biotechnol. Bioeng. 56(2), 1997
PMID: 18636622
MIRACLE: mass isotopomer ratio analysis of U-13C-labeled extracts. A new method for accurate quantification of changes in concentrations of intracellular metabolites.
Mashego MR, Wu L, Van Dam JC, Ras C, Vinke JL, Van Winden WA, Van Gulik WM, Heijnen JJ., Biotechnol. Bioeng. 85(6), 2004
PMID: 14966803
Identification of localized and distributed bottlenecks in metabolic pathways
Mavrovouniotis, 1993
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum.
McHardy AC, Tauch A, Ruckert C, Puhler A, Kalinowski J., J. Biotechnol. 104(1-3), 2003
PMID: 12948641
Bidirectional reaction steps in metabolic networks: IV. Optimal design of isotopomer labeling experiments.
Mollney M, Wiechert W, Kownatzki D, de Graaf AA., Biotechnol. Bioeng. 66(2), 1999
PMID: 10567067
The genome stability in Corynebacterium species due to lack of the recombinational repair system.
Nakamura Y, Nishio Y, Ikeo K, Gojobori T., Gene 317(1-2), 2003
PMID: 14604803
Chemical Composition of Escherichia coli
Neidhardt, 1996
Roles of pyruvate kinase and malic enzyme in Corynebacterium glutamicum for growth on carbon sources requiring gluconeogenesis.
Netzer R, Krause M, Rittmann D, Peters-Wendisch PG, Eggeling L, Wendisch VF, Sahm H., Arch. Microbiol. 182(5), 2004
PMID: 15375646
Cometabolism of a nongrowth substrate: L-serine utilization by Corynebacterium glutamicum.
Netzer R, Peters-Wendisch P, Eggeling L, Sahm H., Appl. Environ. Microbiol. 70(12), 2004
PMID: 15574911
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Nishio Y, Nakamura Y, Kawarabayasi Y, Usuda Y, Kimura E, Sugimoto S, Matsui K, Yamagishi A, Kikuchi H, Ikeo K, Gojobori T., Genome Res. 13(7), 2003
PMID: 12840036
Sensing nitrogen limitation in Corynebacterium glutamicum: the role of glnK and glnD.
Nolden L, Ngouoto-Nkili CE, Bendt AK, Kramer R, Burkovski A., Mol. Microbiol. 42(5), 2001
PMID: 11886559
A novel gnd mutation leading to increased L-lysine production in Corynebacterium glutamicum.
Ohnishi J, Katahira R, Mitsuhashi S, Kakita S, Ikeda M., FEMS Microbiol. Lett. 242(2), 2005
PMID: 15621447
A novel methodology employing Corynebacterium glutamicum genome information to generate a new L-lysine-producing mutant.
Ohnishi J, Mitsuhashi S, Hayashi M, Ando S, Yokoi H, Ochiai K, Ikeda M., Appl. Microbiol. Biotechnol. 58(2), 2002
PMID: 11876415
Stimulation, monitoring, and analysis of pathway dynamics by metabolic profiling in the aromatic amino acid pathway.
Oldiges M, Kunze M, Degenring D, Sprenger GA, Takors R., Biotechnol. Prog. 20(6), 2004
PMID: 15575692
Applying metabolic profiling techniques for stimulus-response experiments: chances and pitfalls
Oldiges, Technol. Transf. Biotechnol.: From Lab to Industry to Production (), 2005
Formation of volutin granules in Corynebacterium glutamicum.
Pallerla SR, Knebel S, Polen T, Klauth P, Hollender J, Wendisch VF, Schoberth SM., FEMS Microbiol. Lett. 243(1), 2005
PMID: 15668011
In vivo quantification of parallel and bidirectional fluxes in the anaplerosis of Corynebacterium glutamicum.
Petersen S, de Graaf AA, Eggeling L, Mollney M, Wiechert W, Sahm H., J. Biol. Chem. 275(46), 2000
PMID: 10946002
A multi-scale approach for the predictive modeling of metabolic regulation
Petersen, 2003
Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene.
Peters-Wendisch PG, Kreutzer C, Kalinowski J, Patek M, Sahm H, Eikmanns BJ., Microbiology (Reading, Engl.) 144 ( Pt 4)(), 1998
PMID: 9579065
Pyruvate carboxylase is a major bottleneck for glutamate and lysine production by Corynebacterium glutamicum.
Peters-Wendisch PG, Schiel B, Wendisch VF, Katsoulidis E, Mockel B, Sahm H, Eikmanns BJ., J. Mol. Microbiol. Biotechnol. 3(2), 2001
PMID: 11321586
C3-carboxylation as an anaplerotic reaction in phosphoenolpyruvate carboxylase-deficient Corynebacterium glutamicum.
Peters-Wendisch PG, Wendisch VF, de Graaf AA, Eikmanns BJ, Sahm H., Arch. Microbiol. 165(6), 1996
PMID: 8661932
Pyruvate carboxylase as an anaplerotic enzyme in Corynebacterium glutamicum
Peters-Wendisch, Microbiology 143(), 1997
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
Raamsdonk LM, Teusink B, Broadhurst D, Zhang N, Hayes A, Walsh MC, Berden JA, Brindle KM, Kell DB, Rowland JJ, Westerhoff HV, van Dam K, Oliver SG., Nat. Biotechnol. 19(1), 2001
PMID: 11135551
Ethambutol, a cell wall inhibitor of Mycobacterium tuberculosis, elicits L-glutamate efflux of Corynebacterium glutamicum.
Radmacher E, Stansen KC, Besra GS, Alderwick LJ, Maughan WN, Hollweg G, Sahm H, Wendisch VF, Eggeling L., Microbiology (Reading, Engl.) 151(Pt 5), 2005
PMID: 15870446
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).
Reed JL, Vo TD, Schilling CH, Palsson BO., Genome Biol. 4(9), 2003
PMID: 12952533
Characterization of the phosphoenolpyruvate carboxykinase gene from Corynebacterium glutamicum and significance of the enzyme for growth and amino acid production.
Riedel C, Rittmann D, Dangel P, Mockel B, Petersen S, Sahm H, Eikmanns BJ., J. Mol. Microbiol. Biotechnol. 3(4), 2001
PMID: 11565516

AUTHOR UNKNOWN, 0

Roels, 1983
Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections.
Roth SB, Jalava J, Ruuskanen O, Ruohola A, Nikkari S., J. Clin. Microbiol. 42(9), 2004
PMID: 15365022
Automated sampling device for monitoring intracellular metabolite dynamics.
Schaefer U, Boos W, Takors R, Weuster-Botz D., Anal. Biochem. 270(1), 1999
PMID: 10328769
Proteomics
Schaffer, 2005
A high-resolution reference map for cytoplasmic and membrane-associated proteins of Corynebacterium glutamicum.
Schaffer S, Weil B, Nguyen VD, Dongmann G, Gunther K, Nickolaus M, Hermann T, Bott M., Electrophoresis 22(20), 2001
PMID: 11824608
GC-MS libraries for the rapid identification of metabolites in complex biological samples.
Schauer N, Steinhauser D, Strelkov S, Schomburg D, Allison G, Moritz T, Lundgren K, Roessner-Tunali U, Forbes MG, Willmitzer L, Fernie AR, Kopka J., FEBS Lett. 579(6), 2005
PMID: 15733837
Toward metabolic phenomics: analysis of genomic data using flux balances.
Schilling CH, Edwards JS, Palsson BO., Biotechnol. Prog. 15(3), 1999
PMID: 10356245
Mapping the membrane proteome of Corynebacterium glutamicum.
Schluesener D, Fischer F, Kruip J, Rogner M, Poetsch A., Proteomics 5(5), 2005
PMID: 15717325
BRENDA, enzyme data and metabolic information.
Schomburg I, Chang A, Schomburg D., Nucleic Acids Res. 30(1), 2002
PMID: 11752250
Comparative study of flux redistribution of metabolic pathway in glutamate production by two coryneform bacteria.
Shirai T, Nakato A, Izutani N, Nagahisa K, Shioya S, Kimura E, Kawarabayasi Y, Yamagishi A, Gojobori T, Shimizu H., Metab. Eng. 7(2), 2005
PMID: 15781416
Adaptation of Corynebacterium glutamicum to ammonium limitation: a global analysis using transcriptome and proteome techniques.
Silberbach M, Schafer M, Huser AT, Kalinowski J, Puhler A, Kramer R, Burkovski A., Appl. Environ. Microbiol. 71(5), 2005
PMID: 15870326
Quantitative metabolome analysis using capillary electrophoresis mass spectrometry.
Soga T, Ohashi Y, Ueno Y, Naraoka H, Tomita M, Nishioka T., J. Proteome Res. 2(5), 2003
PMID: 14582645

AUTHOR UNKNOWN, 0
Metabolic network structure determines key aspects of functionality and regulation.
Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED., Nature 420(6912), 2002
PMID: 12432396
Robustness of cellular functions.
Stelling J, Sauer U, Szallasi Z, Doyle FJ 3rd, Doyle J., Cell 118(6), 2004
PMID: 15369668
Mapping physiological states from microarray expression measurements.
Stephanopoulos G, Hwang D, Schmitt WA, Misra J, Stephanopoulos G., Bioinformatics 18(8), 2002
PMID: 12176828
Network rigidity and metabolic engineering in metabolite overproduction.
Stephanopoulos G, Vallino JJ., Science 252(5013), 1991
PMID: 1904627
Comprehensive analysis of metabolites in Corynebacterium glutamicum by gas chromatography/mass spectrometry.
Strelkov S, von Elstermann M, Schomburg D., Biol. Chem. 385(9), 2004
PMID: 15493881
Large-scale engineering of the Corynebacterium glutamicum genome.
Suzuki N, Okayama S, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 71(6), 2005
PMID: 15933044

AUTHOR UNKNOWN, 0
In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae : I. Experimental observations.
Theobald U, Mailinger W, Baltes M, Rizzi M, Reuss M., Biotechnol. Bioeng. 55(2), 1997
PMID: 18636489
Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction.
Vallino JJ, Stephanopoulos G., Biotechnol. Bioeng. 41(6), 1993
PMID: 18609599
Carbon flux distributions at the glucose 6-phosphate branch point in Corynebacterium glutamicum during lysine overproduction
Vallino, Biotechnol. Progr. 10(), 1994
Carbon flux distributions at the pyruvate branch point in Corynebacterium glutamicum during lysine overproduction
Vallino, Biotechnol. Progr. 10(), 1994
Analysis of in vivo kinetics of glycolysis in aerobic Saccharomyces cerevisiae by application of glucose and ethanol pulses.
Visser D, van Zuylen GA, van Dam JC, Eman MR, Proll A, Ras C, Wu L, van Gulik WM, Heijnen JJ., Biotechnol. Bioeng. 88(2), 2004
PMID: 15449293
Bayes statistics and markov chain monte carlo simulation: an alternative method for parameter identification and error estimation
von, 2004
Phosphorus assimilation and control of the phosphate regulon
Wanner, 1996
Towards improving production of fine chemicals by systems biology: amino acid production by Corynebacterium glutamicum
Wendisch, Chim. Oggi 23(), 2005
Phosphorus metabolism of Corynebacterium glutamicum
Wendisch, 2005
The evolution of molecular biology into systems biology.
Westerhoff HV, Palsson BO., Nat. Biotechnol. 22(10), 2004
PMID: 15470464
13C metabolic flux analysis.
Wiechert W., Metab. Eng. 3(3), 2001
PMID: 11461141
Modeling and simulation: tools for metabolic engineering.
Wiechert W., J. Biotechnol. 94(1), 2002
PMID: 11792451
Validation of metabolic models: concepts, tools, and problems
Wiechert, 2004
From stationary to instationary metabolic flux analysis.
Wiechert W, Noh K., Adv. Biochem. Eng. Biotechnol. 92(), 2005
PMID: 15791936
Metabolic isotopomer labeling systems. Part I: global dynamic behavior.
Wiechert W, Wurzel M., Math Biosci 169(2), 2001
PMID: 11166321
Metabolic network analysis of lysine producing Corynebacterium glutamicum at a miniaturized scale.
Wittmann C, Kim HM, Heinzle E., Biotechnol. Bioeng. 87(1), 2004
PMID: 15211482
Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation.
Zimmer DP, Soupene E, Lee HL, Wendisch VF, Khodursky AB, Peter BJ, Bender RA, Kustu S., Proc. Natl. Acad. Sci. U.S.A. 97(26), 2000
PMID: 11121068
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 16406159
PubMed | Europe PMC

Suchen in

Google Scholar