Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium

Tauch A, Bischoff N, Pühler A, Kalinowski J (2004)
PLASMID 52(2): 102-118.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
Abstract / Bemerkung
Investigation of 62 clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium revealed that 17 possessed plasmids ranging in size from 7.6 to 14.9 kb. The plasmids formed four groups on DNA restriction analysis. The complete nucleotide sequence of a representative from each group (pK43, pK64, pCJ84, and pB85766) was subsequently determined. Additionally, two plasmids (pCo455 and pCo420) were shown to be derivatives of pK43 and pK64 carrying insertion sequences of the IS3 family. Comparative genomics identified a conserved plasmid backbone consisting, of two distinct DNA modules. Conserved motifs in the parAB-repA module indicated that the sequenced plasmids from C. jeikeium are new members of the pNG2 family. Recombinant derivatives of pK43 were shown to replicate in the soil bacterium Corynebacterium glutamicum and in the human pathogen Corynebacterium diphtheriae. The second plasmid module most likely encodes a novel type of DNA invertase. The respective gene is flanked by highly conservedl 112-bp inverted repeats. All plasmids are 'loaded' with a characteristic set of genes encoding products of unknown function. Plasmids indistinguishable from pK43 by DNA restriction analysis were identified in different C. jeikeium strains, which revealed 16S-23S rDNA spacer length polymorphisms and specific antibiotic susceptibility profiles, implying a wide dissemination of the plasmid in clinical isolates of C jeikeium. (C) 2004 Elsevier Inc. All rights reserved.
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PLASMID
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52
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2
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102-118
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PUB-ID

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Tauch A, Bischoff N, Pühler A, Kalinowski J. Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID. 2004;52(2):102-118.
Tauch, A., Bischoff, N., Pühler, A., & Kalinowski, J. (2004). Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID, 52(2), 102-118. doi:10.1016/j.plasmid.2004.05.003
Tauch, A., Bischoff, N., Pühler, A., and Kalinowski, J. (2004). Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID 52, 102-118.
Tauch, A., et al., 2004. Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID, 52(2), p 102-118.
A. Tauch, et al., “Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium”, PLASMID, vol. 52, 2004, pp. 102-118.
Tauch, A., Bischoff, N., Pühler, A., Kalinowski, J.: Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium. PLASMID. 52, 102-118 (2004).
Tauch, Andreas, Bischoff, N., Pühler, Alfred, and Kalinowski, Jörn. “Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium”. PLASMID 52.2 (2004): 102-118.

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Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109.
Abdali N, Younas F, Mafakheri S, Pothula KR, Kleinekathöfer U, Tauch A, Benz R., BMC Biochem 19(1), 2018
PMID: 29743008
Analysis of the Impact of Rosuvastatin on Bacterial Mevalonate Production Using a UPLC-Mass Spectrometry Approach.
Nolan JA, Kinsella M, Hill C, Joyce SA, Gahan CG., Curr Microbiol 73(1), 2016
PMID: 26960292
Corynebacterium jeikeium jk0268 constitutes for the 40 amino acid long PorACj, which forms a homooligomeric and anion-selective cell wall channel.
Abdali N, Barth E, Norouzy A, Schulz R, Nau WM, Kleinekathöfer U, Tauch A, Benz R., PLoS One 8(10), 2013
PMID: 24116064
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A., BMC Genomics 13(), 2012
PMID: 22524407
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehoever P, Arnold W, Bekel T, Blom J, Gartemann KH, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A., BMC Genomics 11(), 2010
PMID: 20137072
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Götker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Dröge M, Pühler A., J Biotechnol 136(1-2), 2008
PMID: 18367281
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
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PMID: 18430482
Nitrogen metabolism and nitrogen control in corynebacteria: variations of a common theme.
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PMID: 17183220
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Hansmeier N, Chao TC, Daschkey S, Müsken M, Kalinowski J, Pühler A, Tauch A., Proteomics 7(7), 2007
PMID: 17352426
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PMID: 17804669
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PMID: 15968079
Manipulating corynebacteria, from individual genes to chromosomes.
Vertès AA, Inui M, Yukawa H., Appl Environ Microbiol 71(12), 2005
PMID: 16332735

50 References

Daten bereitgestellt von Europe PubMed Central.

Genomic diversity of several Corynebacterium species identified by amplification of the 16S-23S rRNA gene spacer regions
Aubel, Int. J. Syst. Bacteriol. 47(), 1997
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL., Nucleic Acids Res. 27(23), 1999
PMID: 10556321
Clinical microbiology of coryneform bacteria.
Funke G, von Graevenitz A, Clarridge JE 3rd, Bernard KA., Clin. Microbiol. Rev. 10(1), 1997
PMID: 8993861
Plasmid and chromosome partitioning: surprises from phylogeny.
Gerdes K, Moller-Jensen J, Bugge Jensen R., Mol. Microbiol. 37(3), 2000
PMID: 10931339
Classification of corynebacteria associated with endocarditis (group JK) as Corynebacterium jeikeium sp. nov. system
Jackman, Appl. Microbiol. 9(), 1987
Electroporation-mediated transformation of Arcanobacterium (Actinomyces) pyogenes.
Jost BH, Billington SJ, Songer JG., Plasmid 38(2), 1997
PMID: 9339471
pTAR-encoded proteins in plasmid partitioning.
Kalnin K, Stegalkina S, Yarmolinsky M., J. Bacteriol. 182(7), 2000
PMID: 10714993
Plasmid-associated bacteriocin production in a JK-type coryneform bacterium
Kerry-Williams, FEMS Microbiol. Lett. 25(), 1984
Plasmids in group JK coryneform bacteria isolated in a single hospital
Kerry-Williams, J. Hyg. Camb. 97(), 1986
Group JK coryneform bacteria.
Kerry-Williams SM, Noble WC., J. Hosp. Infect. 9(1), 1987
PMID: 2880898
Molecular epidemiology of group JK Corynebacterium on a cancer ward: lack of evidence for patient-to-patient transmission.
Khabbaz RF, Kaper JB, Moody MR, Schimpff SC, Tenney JH., J. Infect. Dis. 154(1), 1986
PMID: 3711691
Prospective study of catalase-positive coryneform organisms in clinical specimens: identification, clinical relevance, and antibiotic susceptibility.
Lagrou K, Verhaegen J, Janssens M, Wauters G, Verbist L., Diagn. Microbiol. Infect. Dis. 30(1), 1998
PMID: 9488824
A variety of gram-positive bacteria carry mobile mef genes.
Luna VA, Coates P, Eady EA, Cove JH, Nguyen TT, Roberts MC., J. Antimicrob. Chemother. 44(1), 1999
PMID: 10459806
Insertion sequences.
Mahillon J, Chandler M., Microbiol. Mol. Biol. Rev. 62(3), 1998
PMID: 9729608
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369

AUTHOR UNKNOWN, 0
Plasmid pGA1 from Corynebacterium glutamicum codes for a gene product that positively influences plasmid copy number.
Nesvera J, Patek M, Hochmannova J, Abrhamova Z, Becvarova V, Jelinkova M, Vohradsky J., J. Bacteriol. 179(5), 1997
PMID: 9045809
Features of the replicon of plasmid pAM10.6 of Pseudomonas fluorescens.
Peters M, Jogi E, Suitso I, Punnisk T, Nurk A., Plasmid 46(1), 2001
PMID: 11535033
An investigation of nosocomial infection with Corynebacterium jeikeium in surgical patients using a ribosomal RNA gene probe.
Pitcher D, Johnson A, Allerberger F, Woodford N, George R., Eur. J. Clin. Microbiol. Infect. Dis. 9(9), 1990
PMID: 1699761
Inducible macrolide resistance in Corynebacterium jeikeium.
Rosato AE, Lee BS, Nash KA., Antimicrob. Agents Chemother. 45(7), 2001
PMID: 11408212

Sambrook, 1989
Sequence and functional analysis of the Streptomyces phaeochromogenes plasmid pJV1 reveals a modular organization of Streptomyces plasmids that replicate by rolling circle.
Servin-Gonzalez L, Sampieri AI, Cabello J, Galvan L, Juarez V, Castro C., Microbiology (Reading, Engl.) 141 ( Pt 10)(), 1995
PMID: 7582009
Diversity in the serine recombinases.
Smith MC, Thorpe HM., Mol. Microbiol. 44(2), 2002
PMID: 11972771
In vitro susceptibilities of aerobic and facultative non-spore-forming gram-positive bacilli to HMR 3647 (RU 66647) and 14 other antimicrobials.
Soriano F, Fernandez-Roblas R, Calvo R, Garcia-Calvo G., Antimicrob. Agents Chemother. 42(5), 1998
PMID: 9593121
The Staden sequence analysis package.
Staden R., Mol. Biotechnol. 5(3), 1996
PMID: 8837029
Molecular strategies for overcoming antibiotic resistance in bacteria.
Tan YT, Tillett DJ, McKay IA., Mol Med Today 6(8), 2000
PMID: 10904248
Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics.
Tauch A, Puhler A, Kalinowski J, Thierbach G., J. Biotechnol. 104(1-3), 2003
PMID: 12948627
Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli.
Tauch A, Kirchner O, Wehmeier L, Kalinowski J, Puhler A., FEMS Microbiol. Lett. 123(3), 1994
PMID: 7988915
Efficient electrotransformation of corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1.
Tauch A, Kirchner O, Loffler B, Gotker S, Puhler A, Kalinowski J., Curr. Microbiol. 45(5), 2002
PMID: 12232668
Evaluation of the applicability of amplified rDNA-restriction analysis (ARDRA) to identification of species of the genus Corynebacterium.
Vaneechoutte M, Riegel P, de Briel D, Monteil H, Verschraegen G, De Rouck A, Claeys G., Res. Microbiol. 146(8), 1995
PMID: 8584787
Molecular analysis and characterization of a broad-host-range plasmid, pEP2.
Zhang Y, Praszkier J, Hodgson A, Pittard AJ., J. Bacteriol. 176(18), 1994
PMID: 7521871

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