The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner

Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C (2017)
PLOS ONE 12(10): e0186505.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Schneefeld, Marie; Busche, TobiasUniBi; Geffers, Robert; Kalinowski, JörnUniBi; Bange, Franz-Christoph
Abstract / Bemerkung
The Mycobacterium tuberculosis protein encoded by the Rv1986 gene is a target for memory T cells in patients with tuberculosis, and shows strong similarities to a lysine exporter LysE of Corynebacterium glutamicum. During infection, the pathogen Mycobacterium tuberculosis adapts its metabolism to environmental changes. In this study, we found that the expression of Rv1986 is controlled by Rv1985c. Rv1985c is located directly upstream of Rv1986 with an overlapping promoter region between both genes. Semiquantitative reverse transcription PCR using an isogenic mutant of Mycobacterium tuberculosis lacking Rv1985c showed that in the presence of lysine, Rv1985c protein positively upregulated the expression of Rv1986. RNA sequencing revealed the transcription start points for both transcripts and overlapping promoters. An inverted repeat in the center of the intergenic region was identified, and binding of Rv1985c protein to the intergenic region was confirmed by electrophoretic mobility shift assays. Whole transcriptome expression analysis and RNAsequencing showed downregulated transcription of ppsBCD in the Rv1985c-mutant compared to the wild type strain. Taken together, our findings characterize the regulatory network of Rv1985c in Mycobacterium tuberculosis. Due to their similarity of an orthologous gene pair in Corynebacterium glutamicum, we suggest to rename Rv1985c to lysG((Mt)), and Rv1986 to lysE((Mt)).
Erscheinungsjahr
2017
Zeitschriftentitel
PLOS ONE
Band
12
Ausgabe
10
Art.-Nr.
e0186505
ISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2916447

Zitieren

Schneefeld M, Busche T, Geffers R, Kalinowski J, Bange F-C. The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE. 2017;12(10): e0186505.
Schneefeld, M., Busche, T., Geffers, R., Kalinowski, J., & Bange, F. - C. (2017). The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE, 12(10), e0186505. doi:10.1371/journal.pone.0186505
Schneefeld, Marie, Busche, Tobias, Geffers, Robert, Kalinowski, Jörn, and Bange, Franz-Christoph. 2017. “The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner”. PLOS ONE 12 (10): e0186505.
Schneefeld, M., Busche, T., Geffers, R., Kalinowski, J., and Bange, F. - C. (2017). The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE 12:e0186505.
Schneefeld, M., et al., 2017. The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE, 12(10): e0186505.
M. Schneefeld, et al., “The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner”, PLOS ONE, vol. 12, 2017, : e0186505.
Schneefeld, M., Busche, T., Geffers, R., Kalinowski, J., Bange, F.-C.: The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner. PLOS ONE. 12, : e0186505 (2017).
Schneefeld, Marie, Busche, Tobias, Geffers, Robert, Kalinowski, Jörn, and Bange, Franz-Christoph. “The transcriptional regulator LysG (Rv1985c) of Mycobacterium tuberculosis activates lysE (Rv1986) in a lysine-dependent manner”. PLOS ONE 12.10 (2017): e0186505.

Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

48 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, 0
Mycobacterium tuberculosis: here today, and here tomorrow.
Russell DG., Nat. Rev. Mol. Cell Biol. 2(8), 2001
PMID: 11483990
How can immunology contribute to the control of tuberculosis?
Kaufmann SH., Nat. Rev. Immunol. 1(1), 2001
PMID: 11905811
The secret lives of the pathogenic mycobacteria.
Cosma CL, Sherman DR, Ramakrishnan L., Annu. Rev. Microbiol. 57(), 2003
PMID: 14527294
Mycobacterium tuberculosis: success through dormancy.
Gengenbacher M, Kaufmann SH., FEMS Microbiol. Rev. 36(3), 2012
PMID: 22320122
Who benefits from granulomas, mycobacteria or host?
Bold TD, Ernst JD., Cell 136(1), 2009
PMID: 19135882
Mechanism of phagolysosome biogenesis block by viable Mycobacterium tuberculosis.
Vergne I, Chua J, Lee HH, Lucas M, Belisle J, Deretic V., Proc. Natl. Acad. Sci. U.S.A. 102(11), 2005
PMID: 15753315
Expression of katG in Mycobacterium tuberculosis is associated with its growth and persistence in mice and guinea pigs.
Li Z, Kelley C, Collins F, Rouse D, Morris S., J. Infect. Dis. 177(4), 1998
PMID: 9534978
The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide.
Darwin KH, Ehrt S, Gutierrez-Ramos JC, Weich N, Nathan CF., Science 302(5652), 2003
PMID: 14671303
Expression control and specificity of the basic amino acid exporter LysE of Corynebacterium glutamicum.
Bellmann A, Vrljic M, Patek M, Sahm H, Kramer R, Eggeling L., Microbiology (Reading, Engl.) 147(Pt 7), 2001
PMID: 11429454
LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli.
Lehnen D, Blumer C, Polen T, Wackwitz B, Wendisch VF, Unden G., Mol. Microbiol. 45(2), 2002
PMID: 12123461
Quorum sensing and the LysR-type transcriptional activator ToxR regulate toxoflavin biosynthesis and transport in Burkholderia glumae.
Kim J, Kim JG, Kang Y, Jang JY, Jog GJ, Lim JY, Kim S, Suga H, Nagamatsu T, Hwang I., Mol. Microbiol. 54(4), 2004
PMID: 15522077
Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins.
Maddocks SE, Oyston PC., Microbiology (Reading, Engl.) 154(Pt 12), 2008
PMID: 19047729
Molecular biology of the LysR family of transcriptional regulators.
Schell MA., Annu. Rev. Microbiol. 47(), 1993
PMID: 8257110
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE 3rd, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajandream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG., Nature 393(6685), 1998
PMID: 9634230
Hypoxia induces an immunodominant target of tuberculosis specific T cells absent from common BCG vaccines.
Gideon HP, Wilkinson KA, Rustad TR, Oni T, Guio H, Kozak RA, Sherman DR, Meintjes G, Behr MA, Vordermeier HM, Young DB, Wilkinson RJ., PLoS Pathog. 6(12), 2010
PMID: 21203487
Mycobacterial persistence requires the utilization of host cholesterol.
Pandey AK, Sassetti CM., Proc. Natl. Acad. Sci. U.S.A. 105(11), 2008
PMID: 18334639
Enzymatic assembly of DNA molecules up to several hundred kilobases.
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA 3rd, Smith HO., Nat. Methods 6(5), 2009
PMID: 19363495
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique
AUTHOR UNKNOWN, 2013
ArrayExpress update--simplifying data submissions.
Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, Petryszak R, Sarkans U, Brazma A., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25361974
Fast gapped-read alignment with Bowtie 2.
Langmead B, Salzberg SL., Nat. Methods 9(4), 2012
PMID: 22388286
ReadXplorer 2-detailed read mapping analysis and visualization from one single source.
Hilker R, Stadermann KB, Schwengers O, Anisiforov E, Jaenicke S, Weisshaar B, Zimmermann T, Goesmann A., Bioinformatics 32(24), 2016
PMID: 27540267

AUTHOR UNKNOWN, 2004
The roles of the nitrate reductase NarGHJI, the nitrite reductase NirBD and the response regulator GlnR in nitrate assimilation of Mycobacterium tuberculosis.
Malm S, Tiffert Y, Micklinghoff J, Schultze S, Joost I, Weber I, Horst S, Ackermann B, Schmidt M, Wohlleben W, Ehlers S, Geffers R, Reuther J, Bange FC., Microbiology (Reading, Engl.) 155(Pt 4), 2009
PMID: 19332834
NPS@: network protein sequence analysis.
Combet C, Blanchet C, Geourjon C, Deleage G., Trends Biochem. Sci. 25(3), 2000
PMID: 10694887
A simple method for displaying the hydropathic character of a protein.
Kyte J, Doolittle RF., J. Mol. Biol. 157(1), 1982
PMID: 7108955
Gene knockout reveals a novel gene cluster for the synthesis of a class of cell wall lipids unique to pathogenic mycobacteria.
Azad AK, Sirakova TD, Fernandes ND, Kolattukudy PE., J. Biol. Chem. 272(27), 1997
PMID: 9201977
New Targets and Cofactors for the Transcription Factor LrpA from Mycobacterium tuberculosis.
Song N, Cui Y, Li Z, Chen L, Liu S., DNA Cell Biol. 35(4), 2016
PMID: 26789099
The multiple stress responsive transcriptional regulator Rv3334 of Mycobacterium tuberculosis is an autorepressor and a positive regulator of kstR.
Gomez RL, Jose L, Ramachandran R, Raghunandanan S, Muralikrishnan B, Johnson JB, Sivakumar KC, Mundayoor S, Kumar RA., FEBS J. 283(16), 2016
PMID: 27334653
In vitro interactions of CysB protein with the cysK and cysJIH promoter regions of Salmonella typhimurium.
Monroe RS, Ostrowski J, Hryniewicz MM, Kredich NM., J. Bacteriol. 172(12), 1990
PMID: 2254265

AUTHOR UNKNOWN, 2000
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 29049397
PubMed | Europe PMC

Suchen in

Google Scholar