PUB - Publikationen an der Universität Bielefeld

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• [158]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986391

  Höhn, D., Masello, J., Kümmel, M. N., Griep, S., Goesmann, A., and Quillfeldt, P. (2024). Nestling Diet of Two Sympatric Insectivorous Passerines in Different Habitats—A Metabarcoding Study. Birds 5, 67-89.

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• [157]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996

  Wibberg, D., Genzel, F., Verwaaijen, B., Blom, J., Rupp, O., Goesmann, A., Zrenner, R., Grosch, R., Pühler, A., and Schlüter, A. (2021). Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. Journal of Fungi 7:832.

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• [156]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320

  Cardoso, S. D., Goncalves, D., Goesmann, A., Canario, A. V. M., and Oliveira, R. F. (2018). Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish. MOLECULAR ECOLOGY 27, 789-803.

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• [155]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526

  Golyshina, O. V., Tran, H., Reva, O. N., Lemak, S., Yakunin, A. F., Goesmann, A., Nechitaylo, T. Y., LaCono, V., Smedile, F., Slesarev, A., et al. (2017). Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T. SCIENTIFIC REPORTS 7:3682.

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• [154]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976

  Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., and Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements 4:e00524-16.

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• [153]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279

  Huja, S., Oren, Y., Trost, E., Brzuszkiewicz, E., Biran, D., Blom, J., Goesmann, A., Gottschalk, G., Hacker, J., Ron, E. Z., et al. (2015). Genomic Avenue to Avian Colisepticemia. mBio 6:e01681-14.

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• [152]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035

  Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements 3:e00680-15.

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• [151]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131

  Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., and Hoffman, J. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics 16:1038.

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• [150]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605

  Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K. - E., and Ernst, J. F. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211, 20-30.

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• [149]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423

  Chakarov, N., Linke, B., Boerner, M., Goesmann, A., Krüger, O., and Hoffman, J. (2015). Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite. Molecular Ecology 24, 1355-1363.

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• [148]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944

  Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements 2.

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• [147]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946

  Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., Rosleff Sörensen, T., Stracke, R., Reinhardt, R., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505, 546-549.

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• [146]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174

  Christiansen, G., Goesmann, A., and Kurmayer, R. (2014). Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix. Applied and environmental microbiology 80, 4887-4897.

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• [145]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652

  Bonte, A., Neuweger, H., Goesmann, A., Thonar, C., Mäder, P., Langenkämper, G., and Niehaus, K. (2014). Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture 94, 2605-2612.

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• [144]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552

  Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., and Noll, T. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology 178, 23-31.

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• [143]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773

  Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., and Goesmann, A. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE 9:e85568.

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• [142]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682

  Wegmann, U., Louis, P., Goesmann, A., Henrissat, B., Duncan, S. H., and Flint, H. J. (2014). Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. Environmental microbiology 16, 2879-2890.

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• [141]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976

  Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., Biener, R., Schwartz, D., and Kalinowski, J. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178, 41-42.

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• [140]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732

  Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., Abe, F., Takahashi, K., Kaiser, O., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18, 853-863.

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• [139]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079

  Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., Hain, T., and Chakraborty, T. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14:47.

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• [138]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837

  Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., and Domann, E. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements 1, e00165-12.

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• [137]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601

  Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., Rohlfs, M., Brinkhoff, T., Cypionka, H., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE 8:e57487.

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• [136]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309

  Bolzan de Campos, S., Youn, J. - W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L. K., Goesmann, A., Wendisch, V. F., et al. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology 65, 593-601.

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• [135]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908

  Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167, 142-155.

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• [134]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756

  Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology 36, 449-456.

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• [133]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943

  Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., Vieites, D. R., Nieto-Roman, S., Haas, S., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution 68, 657-670.

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• [132]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228

  Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31, 1148.

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• [131]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946

  Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.

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• [130]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238

  Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., Smits, T. H. M., and Lopez, M. M. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology 62, 786-798.

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• [129]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581

  Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., Romand, S., Hesse, F., Budach, W. E., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31, 694-695.

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• [128]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080

  Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., and Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal 11, 717-733.

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• [127]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956

  Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.

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• [126]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922

  Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology 31, 294-296.

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• [125]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938

  Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., Beer, S. V., Luck, J., Duffy, B., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE 8:e55644.

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• [124]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668

  Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14:926.

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• [123]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129

  Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., and Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29, 2452-2459.

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• [122]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202

  Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., and Goesmann, A. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167, 156-165.

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• [121]
  

  2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625

  Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., and Langenkämper, G. (In Press).“Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen”. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.

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• [120]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230

  Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., and Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7:e41606.

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• [119]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959

  Kahlke, T., Goesmann, A., Hjerde, E., Willassen, N. P., and Haugen, P. (2012). Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics 13:179.

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• [118]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966

  Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., Mraheil, M., Domann, E., Schaffrath, S., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13:144.

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• [117]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618

  Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., Sørensen, S., Pühler, A., and Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158, 248-258.

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• [116]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990

  Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., and Wissuwa, M. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta 236, 959-973.

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• [115]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949

  Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., and Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE 7:e33351.

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• [114]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858

  Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 7.

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• [113]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535

  Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161, 153-166.

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• [112]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681

  Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., and Klocke, M. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79, 785-799.

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• [111]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256

  Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., and Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology 194, 3555.

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• [110]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232

  Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., and Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11, 512-526.

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• [109]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853

  Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology 155, 247-256.

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• [108]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002

  Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., and Brinkrolf, K. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research 12, 382-386.

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• [107]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526

  Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., Noll, T., Borth, N., and Grillari, J. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology 158, 151-155.

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• [106]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255

  Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., and Neuweger, H. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics 8, 310-322.

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• [105]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774

  Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11, 1582-1583.

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• [104]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937

  Rezzonico, F., Braun-Kiewnick, A., Mann, R. A., Rodoni, B., Goesmann, A., Duffy, B., and Smits, T. H. M. (2012). Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology 13, 975-984.

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  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081

  De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., Frey, J. E., Smits, T. H. M., Duffy, B., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology 194, 1615-1616.

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  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610

  Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., and Schoen, C. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology 194, 5144-5145.

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  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281

  Zischka, M., Kuenne, C., Blom, J., Dabrowski, P. W., Linke, B., Hain, T., Nitsche, A., Goesmann, A., Larsen, J., Jensen, L. B., et al. (2012). Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology 194, 5490-5491.

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  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946

  Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., Frey, J. E., Rodoni, B. C., Duffy, B., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene 504, 6-12.

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  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768

  Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., Tauch, A., Borth, N., Grillari, J., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings 5, P6.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398

  Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2011). Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology 193, 2066.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276

  Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE 6:e14519.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830

  Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 6:e25724.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063

  Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., and Nattkemper, T. W. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science 9:30.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800

  Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., and Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12:579.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634

  Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731

  Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., Szczepanowski, R., Goesmann, A., Setubal, J. C., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155, 50-62.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371

  Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154, 312-320.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576

  Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., Borth, N., Goesmann, A., Grillari, J., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology 156, 227-235.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [89]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576

  Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., and Greub, G. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology 13, 1454-1466.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445

  Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., and Goesmann, A. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology 155, 118-126.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [87]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104

  Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., Stockwell, V. O., and Duffy, B. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE 6:e22247.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730

  Gonzalez, J. M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez-Guerra, A., Goesmann, A., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology 77, 8676-8686.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455

  Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M. J., Goesmann, A., Baumbach, J., and Becker, A. (2011). RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology 155, 127-134.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [84]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780

  Doppmeier, D., Stracke, R., Lutter, P., Goesmann, A., Niehaus, K., and Weisshaar, B. (2011).“Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings”. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.

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  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751

  Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., and Schlüter, A. (2011). “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods” in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, de Bruijn, F. J. ed. (Hoboken, NJ, USA: Wiley-Blackwell), 403-414.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032

  Joseph, B., Schwarz, R. F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., Frosch, M., Mueller, T., Vogel, U., et al. (2011). Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE 6:e18441.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389

  Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., and Frosch, M. (2011). Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology 193, 2064-2065.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902

  De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., Arnone, M. I., Goesmann, A., Reinhardt, R., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling 27, 367-374.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952

  Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., and Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27, 1351-1358.

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  2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892

  Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F. - J., Weidner, S., Goesmann, A., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology 155, 20-33.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955

  Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., Höner zu Siederdissen, C., Bort, J. A. H., Wieser, M., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153, 62-75.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058

  Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J. - E., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology 155, 11-19.

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  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578

  Linke, B., Giegerich, R., and Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 27, 903-911.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439

  Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., Stoye, J., Alves Dorella, F., Souza Rocha, F., et al. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 11:728.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508

  Bertelli, C., Collyn, F., Croxatto, A., Rückert, C., Polkinghorne, A., Kebbi-Beghdadi, C., Goesmann, A., Vaughan, L., and Greub, G. (2010). The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE 5:e10890.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628

  Smits, T. H. M., Rezzonico, F., Pelludat, C., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS 308, 48-54.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039

  Kuenne, C., Voget, S., Pischimarov, J., Oehm, S., Goesmann, A., Daniel, R., Hain, T., and Chakraborty, T. (2010). Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE 5:e12511.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692

  Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A., and Goesmann, A. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research 9, 1660-1672.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275

  Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics 11:91.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504

  Yang, I., John, U., Beszteri, S., Glöckner, G., Krock, B., Goesmann, A., and Cembella, A. D. (2010). Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics 11:248.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445

  Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS 23, 384-393.

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  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., Linke, B., Neuweger, H., Schneiker-Bekel, S., et al. (2010). “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions” in Introduction to Marine Genomics (Advances in Marine Genomics), Cock, J. M., Tessmar-Raible, K., Boyen, C., and Viard, F. eds., vol. 1, (Netherlands: Springer Netherlands), 315-396.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644

  Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics 11:2.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579

  Farnbacher, M., Jahns, T., Willrodt, D., Daniel, R., Haas, R., Goesmann, A., Kurtz, S., and Rieder, G. (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics 11:335.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692

  Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., Kaerst, U., Goesmann, A., Pühler, A., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology 192, 1473-1474.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319

  Henckel, K., Küster, H., Stutz, L., and Goesmann, A. (2010). MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula. BMC Research Notes 3:262.

  PUB | PDF | DOI | PubMed | Europe PMC
   
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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262

  Smits, T. H. M., Rezzonico, F., Kamber, T., Goesmann, A., Ishimaru, C. A., Stockwell, V. O., Frey, J. E., and Duffy, B. (2010). Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology 192, 6486-6487.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186

  Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., Schneider, R., Tenenbaum, D., et al. (2010). Visualization of omics data for systems biology. Nat Methods 7, S56-S68.

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  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110

  Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R. F., Becker, A., Goesmann, A., Frosch, M., et al. (2010). Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY 192, 5363-5377.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022

  Krawczyk, J., Goesmann, A., Nolte, R., Werber, M., and Weisshaar, B. (2009). Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine 4, 4.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097

  Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W. F., Martinez-Arias, R., Bartels, D., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11, 1038-1055.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394

  Goesmann, A., Schneider, J., Trost, E., and Tauch, A. (2009). Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum 15, 279-281.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., Schneider, J., Kalinowski, J., and Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3:82.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187

  Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300

  Henckel, K., Runte, K. J., Bekel, T., Dondrup, M., Jakobi, T., Küster, H., and Goesmann, A. (2009). TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology 9, 19.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314

  Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10, 56.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321

  Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467

  Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B. K., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140, 45-50.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531

  Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098

  Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., and Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10, 430.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936

  Wegmann, U., Overweg, K., Horn, N., Goesmann, A., Narbad, A., Gasson, M. J., and Shearman, C. (2009). Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY 191, 7142-7143.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447

  Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140, 3-12.

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  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461

  Dondrup, M., Hueser, A. T., Mertens, D., and Goesmann, A. (2009). An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY 140, 18-26.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292

  Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J. V., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9:449.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699

  Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., and Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24, 2726-2732.

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• [42]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024

  Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., Patschkowski, T., Rückert, C., Schmid, J., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134, 33-45.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257

  Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105, 3473-3478.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009

  Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.

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• [39]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956

  Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., Selbitschka, W., Weidner, S., Schlüter, A., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136, 31-37.

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• [38]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987

  Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., Krause, L., Kroemeke, H., Kruse, O., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136, 77-90.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918

  Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.

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• [36]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785

  Oehm, S., Gilbert, D., Tauch, A., Stoye, J., and Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36, W433-W437.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939

  Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136, 22-30.

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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364

  Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., and Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36, 2230-2239.

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  2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381

  Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.

  PUB
   
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  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198

  Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., and Beutin, L. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76, 5466-5477.

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  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327

  Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.

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  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047

  Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., Howley, P., Chaplin, P., Suter, M., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY 88, 3249-3259.

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  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1:55.

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  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149

  Moran, M. A., Belas, R., Schell, M. A., Gonzalez, J. M., Sun, F., Sun, S., Binder, B. J., Edmonds, J., Ye, W., Orcutt, B., et al. (2007). Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73, 4559-4569.

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  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098

  Wegmann, U., O'Connell-Motherwy, M., Zomer, A., Buist, G., Shearman, C., Canchaya, C., Ventura, M., Goesmann, A., Gasson, M. J., Kuipers, O. P., et al. (2007). Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY 189, 3256-3270.

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• [26]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268

  Bahl, M. I., Hansen, L. H., Goesmann, A., and Sorensen, S. J. (2007). The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID 58, 31-43.

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• [25]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739

  Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., Dondrup, M., Henckel, K., Goesmann, A., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry 68, 19-32.

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• [24]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976

  Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., Friedrich, F., Hurek, T., Krause, L., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology 24, 1385-1391.

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  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182

  Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24, 997-1004.

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• [22]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354

  Hohnjec, N., Henckel, K., Bekel, T., Gouzy, J., Dondrup, M., Goesmann, A., and Küster, H. (2006). Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY 33, 737-748.

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• [21]
  

  2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017

  Schoen, C., Claus, H., Goesmann, A., Mueller, T., Brandt, P., Otto-Karg, I., Schramm-Glueck, A., Vogel, U., and Frosch, M. (2006). Genome comparison of non-pathogenic and pathogenic meningococci. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 296, 134.

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• [20]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701

  Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., and Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica 4, 4-6.

  PUB
   
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  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316

  Hain, T., Steinweg, C., Kuenne, C. T., Billion, A., Ghai, R., Chatterjee, S. S., Domann, E., Kaerst, U., Goesmann, A., Bekel, T., et al. (2006). Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology 188, 8299-8302.

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• [18]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302

  Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21, 853-859.

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  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712

  Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY 187, 7254-7266.

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  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652

  Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. - Y., Cohoon, M., Crécy-Lagard, V. de, Diaz, N. N., Disz, T., Edwards, R., et al. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research 33, 5691-5702.

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  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317

  Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187, 4671-4682.

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• [14]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644

  Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A., and Meyer, F. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research 33, W710-W716.

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• [13]
  

  2004 | Bielefelder E-Dissertation | PUB-ID: 2301314

  Goesmann, A. (2004). BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. Bielefeld (Germany): Bielefeld University.

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  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756

  Westberg, J., Persson, A., Holmberg, A., Goesmann, A., Lundeberg, J., Johansson, K. E., Pettersson, B., and Uhlen, M. (2004). The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH 14, 221-227.

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  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953

  Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., Lambert, C., Evans, K. J., Goesmann, A., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE 303, 689-692.

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  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424

  McHardy, A. C., Goesmann, A., Pühler, A., and Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20, 1622-1631.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656

  Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., and Schlüter, A. (2004). Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150, 3613-3630.

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• [8]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260

  Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., and Meyer, F. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106, 135-146.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286

  Goesmann, A., Linke, B., Rupp, O., Krause, L., Bartels, D., Dondrup, M., McHardy, A. C., Wilke, A., Pühler, A., and Meyer, F. (2003). Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY 106, 157-167.

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  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251

  Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., and Meyer, F. (2003). Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY 106, 121-133.

  PUB | DOI | WoS | PubMed | Europe PMC
   
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  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272

  Wilke, A., Rückert, C., Bartels, D., Dondrup, M., Goesmann, A., Hüser, A. T., Kespohl, S., Linke, B., Mahne, M., McHardy, A., et al. (2003). Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY 106, 147-156.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324

  Tauch, A., Schlüter, A., Bischoff, N., Goesmann, A., Meyer, F., and Pühler, A. (2003). The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Molecular Genetics and Genomics 268, 570-584.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [3]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880

  Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.

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  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035

  Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104, 5-25.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [1]
  

  2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366

  Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., and Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18, 124-129.

  PUB | DOI | WoS | PubMed | Europe PMC