170 Publications

Mark all

[170]
2017 | Journal Article | PUB-ID: 2913386
Jaeger, D., Winkler, A., Mussgnug, J. H., Kalinowski, J., Goesmann, A., and Kruse, O. (2017). Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation. Biotechnology for Biofuels 10:197.
PUB | PDF | DOI
 
[169]
2017 | Journal Article | PUB-ID: 2909153
Yu, J., Blom, J., Sczyrba, A., and Goesmann, A. (2017). Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology 257, 58-60.
PUB | DOI | PubMed | Europe PMC
 
[168]
2016 | Journal Article | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., and Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements 4:e00524-16.
PUB | PDF | DOI
 
[167]
2016 | Journal Article | PUB-ID: 2907676
Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., Schatschneider, S., Albaum, S., Kölliker, R., et al. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements 4:e01334-16.
PUB | PDF | DOI
 
[166]
2016 | Journal Article | PUB-ID: 2900943
Langenkämper, D., Jakobi, T., Feld, D., Jelonek, L., Goesmann, A., and Nattkemper, T. W. (2016). Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics 7:5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[165]
2016 | Journal Article | PUB-ID: 2905260
Maus, I., Koeck, D. E., Cibis, K. G., Hahnke, S., Kim, Y. S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., et al. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels 9:171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[164]
2015 | Journal Article | PUB-ID: 2782605
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K. - E., and Ernst, J. F. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[163]
2015 | Journal Article | PUB-ID: 2731279
Huja, S., Oren, Y., Trost, E., Brzuszkiewicz, E., Biran, D., Blom, J., Goesmann, A., Gottschalk, G., Hacker, J., Ron, E. Z., et al. (2015). Genomic Avenue to Avian Colisepticemia. mBio 6:e01681-14.
PUB | DOI | WoS
 
[162]
2015 | Journal Article | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements 3.
PUB | DOI | PubMed | Europe PMC
 
[161]
2015 | Journal Article | PUB-ID: 2722138
Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., Langenkämper, G., and Nattkemper, T. W. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology 3:35.
PUB | PDF | DOI
 
[160]
2015 | Journal Article | PUB-ID: 2901297
Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., Albaum, S., Grosch, R., Pühler, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One 10:e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[159]
2015 | Journal Article | PUB-ID: 2758144
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., Goesmann, A., Grosch, R., Pühler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology 203, 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2015 | Journal Article | PUB-ID: 2900131
Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., and Hoffman, J. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics 16:1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[157]
2015 | Journal Article | PUB-ID: 2730423
Chakarov, N., Linke, B., Boerner, M., Goesmann, A., Krüger, O., and Hoffman, J. (2015). Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite. Molecular Ecology 24, 1355-1363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[156]
2014 | Journal Article | PUB-ID: 2672926
Wibberg, D., Tielen, P., Blom, J., Rosin, N., Schobert, M., Tüpker, R., Schatschneider, S., Spilker, D., Albersmeier, A., Goesmann, A., et al. (2014). Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome announcements 2:e00161-14.
PUB | PDF | DOI | PubMed | Europe PMC
 
[155]
2014 | Journal Article | PUB-ID: 2674387
Hilker, R., Stadermann, K. B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., and Goesmann, A. (2014). ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30, 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2014 | Journal Article | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements 2.
PUB | DOI | PubMed | Europe PMC
 
[153]
2014 | Journal Article | PUB-ID: 2706029
Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE 9, e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[152]
2014 | Journal Article | PUB-ID: 2693310
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., and Schlüter, A. (2014). Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology 118, 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2014 | Journal Article | PUB-ID: 2685988
Jakobi, T., Brinkrolf, K., Tauch, A., Noll, T., Stoye, J., Pühler, A., and Goesmann, A. (2014). Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology 190, 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2014 | Journal Article | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., and Noll, T. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[149]
2014 | Journal Article | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., and Goesmann, A. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
[148]
2014 | Book Chapter | PUB-ID: 2694187
Brinkrolf, K., Hoffrogge, R., Hackl, M., Tauch, A., Baumann, M., Noll, T., Goesmann, A., Pühler, A., and Borth, N. (2014). “Functional -Omics for Cell Lines and Processes - The -Omics Technologies on the Example of CHO Cells” in Animal Cell Biotechnology In Biologics Production, Hauser, H., and Wagner, R. eds. (Berlin, Germany: Walter de Gruyter).
PUB
 
[147]
2014 | Journal Article | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., and Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9, e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[146]
2014 | Journal Article | PUB-ID: 2643946
Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., Rosleff Sörensen, T., Stracke, R., Reinhardt, R., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505, 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2014 | Journal Article | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., Biener, R., Schwartz, D., and Kalinowski, J. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2014 | Journal Article | PUB-ID: 2705712
Langenkämper, D., Goesmann, A., and Nattkemper, T. W. (2014). AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization. BMC Bioinformatics 15, 384.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[143]
2014 | Journal Article | PUB-ID: 2694652
Bonte, A., Neuweger, H., Goesmann, A., Thonar, C., Mäder, P., Langenkämper, G., and Niehaus, K. (2014). Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture 94, 2605-2612.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2014 | Journal Article | PUB-ID: 2691732
Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., Abe, F., Takahashi, K., Kaiser, O., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18, 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2014 | Journal Article | PUB-ID: 2694682
Wegmann, U., Louis, P., Goesmann, A., Henrissat, B., Duncan, S. H., and Flint, H. J. (2014). Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. Environmental microbiology 16, 2879-2890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[140]
2014 | Journal Article | PUB-ID: 2690174
Christiansen, G., Goesmann, A., and Kurmayer, R. (2014). Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix. Applied and environmental microbiology 80, 4887-4897.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2014 | Journal Article | PUB-ID: 2658539
Smits, T. H. M., Guerrero-Prieto, V. M., Hernández-Escarcega, G., Blom, J., Goesmann, A., Rezzonico, F., Duffy, B., and Stockwell, V. O. (2014). Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions. Genome announcements 2.
PUB | DOI | PubMed | Europe PMC
 
[138]
2013 | Journal Article | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., Romand, S., Hesse, F., Budach, W. E., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31, 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Journal Article | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Journal Article | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Conference Paper | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., and Langenkämper, G. (In Press).“Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen”. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
[134]
2013 | Journal Article | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., and Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29, 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Journal Article | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167, 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[132]
2013 | Journal Article | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., and Goesmann, A. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2013 | Journal Article | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2013 | Journal Article | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2013 | Journal Article | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2013 | Journal Article | PUB-ID: 2602756
Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology 36, 449-456.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2013 | Journal Article | PUB-ID: 2622238
Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., Smits, T. H. M., and Lopez, M. M. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology 62, 786-798.
PUB | DOI | WoS
 
[126]
2013 | Journal Article | PUB-ID: 2557938
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., Beer, S. V., Luck, J., Duffy, B., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE 8, e55644.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2013 | Journal Article | PUB-ID: 2576080
Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., and Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal 11, 717-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Journal Article | PUB-ID: 2606943
Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., Vieites, D. R., Nieto-Roman, S., Haas, S., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution 68, 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
[123]
2013 | Journal Article | PUB-ID: 2560837
Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., and Domann, E. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements 1, e00165-12.
PUB | DOI | PubMed | Europe PMC
 
[122]
2013 | Journal Article | PUB-ID: 2564601
Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., Rohlfs, M., Brinkhoff, T., Cypionka, H., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE 8, e57487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Journal Article | PUB-ID: 2554079
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., Hain, T., and Chakraborty, T. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14, 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[120]
2012 | Journal Article | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 7.
PUB | DOI | PubMed | Europe PMC
 
[119]
2012 | Journal Article | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., and Klocke, M. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2012 | Journal Article | PUB-ID: 2474002
Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., and Brinkrolf, K. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2012 | Journal Article | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11, 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2012 | Journal Article | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., and Neuweger, H. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics 8, 310-322.
PUB | DOI | WoS
 
[115]
2012 | Journal Article | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., Noll, T., Borth, N., and Grillari, J. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2012 | Journal Article | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., Sørensen, S., Pühler, A., and Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158, 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2012 | Journal Article | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161, 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
[112]
2012 | Journal Article | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., and Schoen, C. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2012 | Journal Article | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., and Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Journal Article | PUB-ID: 2501081
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., Frey, J. E., Smits, T. H. M., Duffy, B., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[109]
2012 | Journal Article | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., Mraheil, M., Domann, E., Schaffrath, S., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[108]
2012 | Journal Article | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., and Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE 7, e33351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Journal Article | PUB-ID: 2526281
Zischka, M., Kuenne, C., Blom, J., Dabrowski, P. W., Linke, B., Hain, T., Nitsche, A., Goesmann, A., Larsen, J., Jensen, L. B., et al. (2012). Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology 194, 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Journal Article | PUB-ID: 2487853
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology 155, 247-256.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2012 | Journal Article | PUB-ID: 2500937
Rezzonico, F., Braun-Kiewnick, A., Mann, R. A., Rodoni, B., Goesmann, A., Duffy, B., and Smits, T. H. M. (2012). Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
[104]
2012 | Journal Article | PUB-ID: 2513256
Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., and Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology 194, 3555.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2012 | Journal Article | PUB-ID: 2500946
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., Frey, J. E., Rodoni, B. C., Duffy, B., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2012 | Journal Article | PUB-ID: 2500990
Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., and Wissuwa, M. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta 236, 959-973.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2012 | Journal Article | PUB-ID: 2500959
Kahlke, T., Goesmann, A., Hjerde, E., Willassen, N. P., and Haugen, P. (2012). Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics 13, 179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2012 | Journal Article | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., and Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11, 512-526.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2011 | Conference Abstract | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., Tauch, A., Borth, N., Grillari, J., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings 5, P6.
PUB | DOI
 
[98]
2011 | Journal Article | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., Höner zu Siederdissen, C., Bort, J. A. H., Wieser, M., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2011 | Book Chapter | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., and Schlüter, A. (2011). “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods” in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, de Bruijn, F. J. ed. (Wiley-Blackwell), 403-414.
PUB | DOI
 
[96]
2011 | Journal Article | PUB-ID: 2411830
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 6:e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
[95]
2011 | Journal Article | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F. - J., Weidner, S., Goesmann, A., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Journal Article | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., Szczepanowski, R., Goesmann, A., Setubal, J. C., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Journal Article | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
[92]
2011 | Journal Article | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., and Goesmann, A. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
[91]
2011 | Journal Article | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., and Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2011 | Journal Article | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., Borth, N., Goesmann, A., Grillari, J., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2011 | Journal Article | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2011 | Conference Abstract | PUB-ID: 2397780
Doppmeier, D., Stracke, R., Lutter, P., Goesmann, A., Niehaus, K., and Weisshaar, B. (2011).“Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings”. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.
PUB
 
[87]
2011 | Journal Article | PUB-ID: 2036058
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J. - E., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology 155, 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2011 | Journal Article | PUB-ID: 2326455
Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M. J., Goesmann, A., Baumbach, J., and Becker, A. (2011). RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[85]
2011 | Journal Article | PUB-ID: 2307104
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., Stockwell, V. O., and Duffy, B. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2011 | Journal Article | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2011 | Journal Article | PUB-ID: 2290032
Joseph, B., Schwarz, R. F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., Frosch, M., Mueller, T., Vogel, U., et al. (2011). Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2011 | Journal Article | PUB-ID: 2300063
Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., and Nattkemper, T. W. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[81]
2011 | Journal Article | PUB-ID: 2451800
Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., and Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[80]
2011 | Journal Article | PUB-ID: 2447730
Gonzalez, J. M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez-Guerra, A., Goesmann, A., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2011 | Journal Article | PUB-ID: 2289576
Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., and Greub, G. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2011 | Journal Article | PUB-ID: 2289902
De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., Arnone, M. I., Goesmann, A., Reinhardt, R., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2011 | Journal Article | PUB-ID: 2093578
Linke, B., Giegerich, R., and Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 27, 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2011 | Journal Article | PUB-ID: 2093398
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2011). Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology 193, 2066.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2011 | Journal Article | PUB-ID: 2093389
Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., and Frosch, M. (2011). Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2010 | Journal Article | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics 11:91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2010 | Journal Article | PUB-ID: 1966439
Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., Stoye, J., Alves Dorella, F., Souza Rocha, F., et al. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 11:728.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2010 | Journal Article | PUB-ID: 1929692
Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A., and Goesmann, A. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research 9, 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2010 | Journal Article | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., Kaerst, U., Goesmann, A., Pühler, A., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2010 | Journal Article | PUB-ID: 1795508
Bertelli, C., Collyn, F., Croxatto, A., Rückert, C., Polkinghorne, A., Kebbi-Beghdadi, C., Goesmann, A., Vaughan, L., and Greub, G. (2010). The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE 5, e10890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2010 | Journal Article | PUB-ID: 1795628
Smits, T. H. M., Rezzonico, F., Pelludat, C., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS 308, 48-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[68]
2010 | Journal Article | PUB-ID: 1796445
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS 23, 384-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2010 | Book Chapter | PUB-ID: 1894907
Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., Linke, B., Neuweger, H., Schneiker-Bekel, S., et al. (2010). “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions” in Introduction to Marine Genomics (Advances in Marine Genomics), Cock, J. M., Tessmar-Raible, K., Boyen, C., and Viard, F. eds., vol. 1, (Netherlands: Springer Netherlands), 315-396.
PUB | DOI
 
[66]
2010 | Journal Article | PUB-ID: 1930110
Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R. F., Becker, A., Goesmann, A., Frosch, M., et al. (2010). Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY 192, 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2010 | Journal Article | PUB-ID: 1796644
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics 11, 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2010 | Journal Article | PUB-ID: 1785504
Yang, I., John, U., Beszteri, S., Glöckner, G., Krock, B., Goesmann, A., and Cembella, A. D. (2010). Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics 11, 248.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[63]
2010 | Journal Article | PUB-ID: 1785579
Farnbacher, M., Jahns, T., Willrodt, D., Daniel, R., Haas, R., Goesmann, A., Kurtz, S., and Rieder, G. (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics 11, 335.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[62]
2010 | Journal Article | PUB-ID: 1894319
Henckel, K., Küster, H., Stutz, L., and Goesmann, A. (2010). MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula. BMC Research Notes 3, 262.
PUB | PDF | DOI | PubMed | Europe PMC
 
[61]
2010 | Journal Article | PUB-ID: 1968262
Smits, T. H. M., Rezzonico, F., Kamber, T., Goesmann, A., Ishimaru, C. A., Stockwell, V. O., Frey, J. E., and Duffy, B. (2010). Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology 192, 6486-6487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2010 | Journal Article | PUB-ID: 1990186
Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., Schneider, R., Tenenbaum, D., et al. (2010). Visualization of omics data for systems biology. Nat Methods 7, S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2010 | Journal Article | PUB-ID: 1794039
Kuenne, C., Voget, S., Pischimarov, J., Oehm, S., Goesmann, A., Daniel, R., Hain, T., and Chakraborty, T. (2010). Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE 5, e12511.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2009 | Journal Article | PUB-ID: 1783187
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[57]
2009 | Journal Article | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2009 | Journal Article | PUB-ID: 1783813
Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., Schneider, J., Kalinowski, J., and Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3:82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[55]
2009 | Journal Article | PUB-ID: 2397394
Goesmann, A., Schneider, J., Trost, E., and Tauch, A. (2009). Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum 15, 279-281.
PUB
 
[54]
2009 | Journal Article | PUB-ID: 1635300
Henckel, K., Runte, K. J., Bekel, T., Dondrup, M., Jakobi, T., Küster, H., and Goesmann, A. (2009). TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology 9, 19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2009 | Journal Article | PUB-ID: 1635321
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[52]
2009 | Journal Article | PUB-ID: 1589098
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., and Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10, 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[51]
2009 | Journal Article | PUB-ID: 1635314
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[50]
2009 | Journal Article | PUB-ID: 1783022
Krawczyk, J., Goesmann, A., Nolte, R., Werber, M., and Weisshaar, B. (2009). Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine 4, 4.
PUB | PDF | DOI | PubMed | Europe PMC
 
[49]
2009 | Journal Article | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2009 | Journal Article | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B. K., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2009 | Journal Article | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W. F., Martinez-Arias, R., Bartels, D., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2009 | Journal Article | PUB-ID: 1589936
Wegmann, U., Overweg, K., Horn, N., Goesmann, A., Narbad, A., Gasson, M. J., and Shearman, C. (2009). Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY 191, 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2009 | Journal Article | PUB-ID: 1634461
Dondrup, M., Hueser, A. T., Mertens, D., and Goesmann, A. (2009). An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY 140, 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2008 | Journal Article | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., Krause, L., Kroemeke, H., Kruse, O., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
[43]
2008 | Journal Article | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2008 | Journal Article | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., and Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24, 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2008 | Journal Article | PUB-ID: 1586785
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., and Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36, W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[40]
2008 | Journal Article | PUB-ID: 1783364
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., and Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36, 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[39]
2008 | Journal Article | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., Selbitschka, W., Weidner, S., Schlüter, A., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2008 | Journal Article | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., Patschkowski, T., Rückert, C., Schmid, J., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2008 | Journal Article | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2008 | Journal Article | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2008 | Journal Article | PUB-ID: 1783292
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J. V., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[34]
2008 | Journal Article | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., and Beutin, L. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2008 | Journal Article | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105, 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[32]
2008 | Conference Paper | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
PUB
 
[31]
2007 | Journal Article | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2007 | Journal Article | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., Dondrup, M., Henckel, K., Goesmann, A., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry 68, 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 
[29]
2007 | Journal Article | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[28]
2007 | Journal Article | PUB-ID: 1631047
Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., Howley, P., Chaplin, P., Suter, M., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY 88, 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2007 | Journal Article | PUB-ID: 1594098
Wegmann, U., O'Connell-Motherwy, M., Zomer, A., Buist, G., Shearman, C., Canchaya, C., Ventura, M., Goesmann, A., Gasson, M. J., Kuipers, O. P., et al. (2007). Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY 189, 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2007 | Journal Article | PUB-ID: 1593268
Bahl, M. I., Hansen, L. H., Goesmann, A., and Sorensen, S. J. (2007). The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID 58, 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Journal Article | PUB-ID: 1593149
Moran, M. A., Belas, R., Schell, M. A., Gonzalez, J. M., Sun, F., Sun, S., Binder, B. J., Edmonds, J., Ye, W., Orcutt, B., et al. (2007). Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73, 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2006 | Journal Article | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., and Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica 4, 4-6.
PUB
 
[23]
2006 | Journal Article | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24, 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2006 | Journal Article | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., Friedrich, F., Hurek, T., Krause, L., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology 24, 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2006 | Conference Abstract | PUB-ID: 1596017
Schoen, C., Claus, H., Goesmann, A., Mueller, T., Brandt, P., Otto-Karg, I., Schramm-Glueck, A., Vogel, U., and Frosch, M. (2006). Genome comparison of non-pathogenic and pathogenic meningococci. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 296, 134.
PUB | WoS
 
[20]
2006 | Journal Article | PUB-ID: 1598354
Hohnjec, N., Henckel, K., Bekel, T., Gouzy, J., Dondrup, M., Goesmann, A., and Küster, H. (2006). Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY 33, 737-748.
PUB | PDF | DOI | WoS
 
[19]
2006 | Journal Article | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C. T., Billion, A., Ghai, R., Chatterjee, S. S., Domann, E., Kaerst, U., Goesmann, A., Bekel, T., et al. (2006). Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology 188, 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Journal Article | PUB-ID: 1773644
Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A., and Meyer, F. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research 33, W710-W716.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[17]
2005 | Journal Article | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY 187, 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Journal Article | PUB-ID: 1773302
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21, 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Journal Article | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[14]
2005 | Journal Article | PUB-ID: 1773652
Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. - Y., Cohoon, M., Crécy-Lagard, V. de, Diaz, N. N., Disz, T., Edwards, R., et al. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research 33, 5691-5702.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2004 | Bielefeld Dissertation | PUB-ID: 2301314
Goesmann, A. (2004). BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
[12]
2004 | Journal Article | PUB-ID: 1607424
McHardy, A. C., Goesmann, A., Pühler, A., and Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20, 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2004 | Journal Article | PUB-ID: 1605656
Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., and Schlüter, A. (2004). Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150, 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[10]
2004 | Journal Article | PUB-ID: 1608953
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., Lambert, C., Evans, K. J., Goesmann, A., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE 303, 689-692.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2004 | Journal Article | PUB-ID: 1608756
Westberg, J., Persson, A., Holmberg, A., Goesmann, A., Lundeberg, J., Johansson, K. E., Pettersson, B., and Uhlen, M. (2004). The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH 14, 221-227.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2003 | Journal Article | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., and Meyer, F. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Journal Article | PUB-ID: 1609286
Goesmann, A., Linke, B., Rupp, O., Krause, L., Bartels, D., Dondrup, M., McHardy, A. C., Wilke, A., Pühler, A., and Meyer, F. (2003). Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY 106, 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Journal Article | PUB-ID: 1609251
Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., and Meyer, F. (2003). Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY 106, 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Journal Article | PUB-ID: 1612324
Tauch, A., Schlüter, A., Bischoff, N., Goesmann, A., Meyer, F., and Pühler, A. (2003). The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. MOLECULAR GENETICS AND GENOMICS 268, 570-584.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[4]
2003 | Journal Article | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[3]
2003 | Journal Article | PUB-ID: 1609272
Wilke, A., Rückert, C., Bartels, D., Dondrup, M., Goesmann, A., Hüser, A. T., Kespohl, S., Linke, B., Mahne, M., McHardy, A., et al. (2003). Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY 106, 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2003 | Journal Article | PUB-ID: 1895035
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[1]
2002 | Journal Article | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., and Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18, 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 

Search

Filter Publications

Display / Sort

Export / Embed

170 Data Publications

Mark all

[170]
2017 | Journal Article | PUB-ID: 2913386
Jaeger, D., Winkler, A., Mussgnug, J. H., Kalinowski, J., Goesmann, A., and Kruse, O. (2017). Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation. Biotechnology for Biofuels 10:197.
PUB | PDF | DOI
 
[169]
2017 | Journal Article | PUB-ID: 2909153
Yu, J., Blom, J., Sczyrba, A., and Goesmann, A. (2017). Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology 257, 58-60.
PUB | DOI | PubMed | Europe PMC
 
[168]
2016 | Journal Article | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., and Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements 4:e00524-16.
PUB | PDF | DOI
 
[167]
2016 | Journal Article | PUB-ID: 2907676
Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., Schatschneider, S., Albaum, S., Kölliker, R., et al. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements 4:e01334-16.
PUB | PDF | DOI
 
[166]
2016 | Journal Article | PUB-ID: 2900943
Langenkämper, D., Jakobi, T., Feld, D., Jelonek, L., Goesmann, A., and Nattkemper, T. W. (2016). Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics 7:5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[165]
2016 | Journal Article | PUB-ID: 2905260
Maus, I., Koeck, D. E., Cibis, K. G., Hahnke, S., Kim, Y. S., Langer, T., Kreubel, J., Erhard, M., Bremges, A., Off, S., et al. (2016). Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels 9:171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[164]
2015 | Journal Article | PUB-ID: 2782605
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K. - E., and Ernst, J. F. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[163]
2015 | Journal Article | PUB-ID: 2731279
Huja, S., Oren, Y., Trost, E., Brzuszkiewicz, E., Biran, D., Blom, J., Goesmann, A., Gottschalk, G., Hacker, J., Ron, E. Z., et al. (2015). Genomic Avenue to Avian Colisepticemia. mBio 6:e01681-14.
PUB | DOI | WoS
 
[162]
2015 | Journal Article | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements 3.
PUB | DOI | PubMed | Europe PMC
 
[161]
2015 | Journal Article | PUB-ID: 2722138
Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., Langenkämper, G., and Nattkemper, T. W. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology 3:35.
PUB | PDF | DOI
 
[160]
2015 | Journal Article | PUB-ID: 2901297
Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., Albaum, S., Grosch, R., Pühler, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One 10:e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[159]
2015 | Journal Article | PUB-ID: 2758144
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., Goesmann, A., Grosch, R., Pühler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology 203, 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2015 | Journal Article | PUB-ID: 2900131
Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., and Hoffman, J. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics 16:1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[157]
2015 | Journal Article | PUB-ID: 2730423
Chakarov, N., Linke, B., Boerner, M., Goesmann, A., Krüger, O., and Hoffman, J. (2015). Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite. Molecular Ecology 24, 1355-1363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[156]
2014 | Journal Article | PUB-ID: 2672926
Wibberg, D., Tielen, P., Blom, J., Rosin, N., Schobert, M., Tüpker, R., Schatschneider, S., Spilker, D., Albersmeier, A., Goesmann, A., et al. (2014). Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome announcements 2:e00161-14.
PUB | PDF | DOI | PubMed | Europe PMC
 
[155]
2014 | Journal Article | PUB-ID: 2674387
Hilker, R., Stadermann, K. B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., and Goesmann, A. (2014). ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30, 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2014 | Journal Article | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements 2.
PUB | DOI | PubMed | Europe PMC
 
[153]
2014 | Journal Article | PUB-ID: 2706029
Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE 9, e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[152]
2014 | Journal Article | PUB-ID: 2693310
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Goesmann, A., Grosch, R., Pühler, A., and Schlüter, A. (2014). Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs). Fungal Biology 118, 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2014 | Journal Article | PUB-ID: 2685988
Jakobi, T., Brinkrolf, K., Tauch, A., Noll, T., Stoye, J., Pühler, A., and Goesmann, A. (2014). Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology 190, 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2014 | Journal Article | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., and Noll, T. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[149]
2014 | Journal Article | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., and Goesmann, A. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
[148]
2014 | Book Chapter | PUB-ID: 2694187
Brinkrolf, K., Hoffrogge, R., Hackl, M., Tauch, A., Baumann, M., Noll, T., Goesmann, A., Pühler, A., and Borth, N. (2014). “Functional -Omics for Cell Lines and Processes - The -Omics Technologies on the Example of CHO Cells” in Animal Cell Biotechnology In Biologics Production, Hauser, H., and Wagner, R. eds. (Berlin, Germany: Walter de Gruyter).
PUB
 
[147]
2014 | Journal Article | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., and Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9, e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
[146]
2014 | Journal Article | PUB-ID: 2643946
Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., Rosleff Sörensen, T., Stracke, R., Reinhardt, R., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505, 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2014 | Journal Article | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., Biener, R., Schwartz, D., and Kalinowski, J. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2014 | Journal Article | PUB-ID: 2705712
Langenkämper, D., Goesmann, A., and Nattkemper, T. W. (2014). AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization. BMC Bioinformatics 15, 384.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[143]
2014 | Journal Article | PUB-ID: 2694652
Bonte, A., Neuweger, H., Goesmann, A., Thonar, C., Mäder, P., Langenkämper, G., and Niehaus, K. (2014). Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture 94, 2605-2612.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2014 | Journal Article | PUB-ID: 2691732
Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., Abe, F., Takahashi, K., Kaiser, O., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18, 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2014 | Journal Article | PUB-ID: 2694682
Wegmann, U., Louis, P., Goesmann, A., Henrissat, B., Duncan, S. H., and Flint, H. J. (2014). Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. Environmental microbiology 16, 2879-2890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[140]
2014 | Journal Article | PUB-ID: 2690174
Christiansen, G., Goesmann, A., and Kurmayer, R. (2014). Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix. Applied and environmental microbiology 80, 4887-4897.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2014 | Journal Article | PUB-ID: 2658539
Smits, T. H. M., Guerrero-Prieto, V. M., Hernández-Escarcega, G., Blom, J., Goesmann, A., Rezzonico, F., Duffy, B., and Stockwell, V. O. (2014). Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions. Genome announcements 2.
PUB | DOI | PubMed | Europe PMC
 
[138]
2013 | Journal Article | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., Romand, S., Hesse, F., Budach, W. E., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology 31, 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Journal Article | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., Goesmann, A., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology 168, 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Journal Article | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., Blifernez-Klassen, O., Kalinowski, J., Goesmann, A., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Conference Paper | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., and Langenkämper, G. (In Press).“Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen”. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
[134]
2013 | Journal Article | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., and Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics 29, 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Journal Article | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology 167, 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[132]
2013 | Journal Article | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., and Goesmann, A. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2013 | Journal Article | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., Wohlleben, W., Pühler, A., Kalinowski, J., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2013 | Journal Article | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2013 | Journal Article | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., von Haeseler, A., Stoye, J., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2013 | Journal Article | PUB-ID: 2602756
Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology 36, 449-456.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2013 | Journal Article | PUB-ID: 2622238
Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., Smits, T. H. M., and Lopez, M. M. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology 62, 786-798.
PUB | DOI | WoS
 
[126]
2013 | Journal Article | PUB-ID: 2557938
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., Beer, S. V., Luck, J., Duffy, B., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE 8, e55644.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2013 | Journal Article | PUB-ID: 2576080
Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., and Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal 11, 717-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Journal Article | PUB-ID: 2606943
Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., Vieites, D. R., Nieto-Roman, S., Haas, S., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution 68, 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
[123]
2013 | Journal Article | PUB-ID: 2560837
Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., and Domann, E. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements 1, e00165-12.
PUB | DOI | PubMed | Europe PMC
 
[122]
2013 | Journal Article | PUB-ID: 2564601
Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., Rohlfs, M., Brinkhoff, T., Cypionka, H., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE 8, e57487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Journal Article | PUB-ID: 2554079
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., Hain, T., and Chakraborty, T. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14, 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[120]
2012 | Journal Article | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 7.
PUB | DOI | PubMed | Europe PMC
 
[119]
2012 | Journal Article | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., and Klocke, M. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2012 | Journal Article | PUB-ID: 2474002
Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., and Brinkrolf, K. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2012 | Journal Article | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell 11, 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2012 | Journal Article | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., and Neuweger, H. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics 8, 310-322.
PUB | DOI | WoS
 
[115]
2012 | Journal Article | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., Noll, T., Borth, N., and Grillari, J. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2012 | Journal Article | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., Sørensen, S., Pühler, A., and Schlüter, A. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology 158, 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2012 | Journal Article | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology 161, 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
[112]
2012 | Journal Article | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., and Schoen, C. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2012 | Journal Article | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., and Harmsen, D. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Journal Article | PUB-ID: 2501081
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., Frey, J. E., Smits, T. H. M., Duffy, B., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[109]
2012 | Journal Article | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., Mraheil, M., Domann, E., Schaffrath, S., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[108]
2012 | Journal Article | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., and Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE 7, e33351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Journal Article | PUB-ID: 2526281
Zischka, M., Kuenne, C., Blom, J., Dabrowski, P. W., Linke, B., Hain, T., Nitsche, A., Goesmann, A., Larsen, J., Jensen, L. B., et al. (2012). Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology 194, 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Journal Article | PUB-ID: 2487853
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology 155, 247-256.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2012 | Journal Article | PUB-ID: 2500937
Rezzonico, F., Braun-Kiewnick, A., Mann, R. A., Rodoni, B., Goesmann, A., Duffy, B., and Smits, T. H. M. (2012). Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
[104]
2012 | Journal Article | PUB-ID: 2513256
Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., and Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology 194, 3555.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2012 | Journal Article | PUB-ID: 2500946
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., Frey, J. E., Rodoni, B. C., Duffy, B., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2012 | Journal Article | PUB-ID: 2500990
Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., and Wissuwa, M. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta 236, 959-973.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2012 | Journal Article | PUB-ID: 2500959
Kahlke, T., Goesmann, A., Hjerde, E., Willassen, N. P., and Haugen, P. (2012). Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics 13, 179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2012 | Journal Article | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., and Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11, 512-526.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2011 | Conference Abstract | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., Tauch, A., Borth, N., Grillari, J., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings 5, P6.
PUB | DOI
 
[98]
2011 | Journal Article | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., Höner zu Siederdissen, C., Bort, J. A. H., Wieser, M., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2011 | Book Chapter | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., and Schlüter, A. (2011). “Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods” in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, de Bruijn, F. J. ed. (Wiley-Blackwell), 403-414.
PUB | DOI
 
[96]
2011 | Journal Article | PUB-ID: 2411830
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., and Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE 6:e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
[95]
2011 | Journal Article | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F. - J., Weidner, S., Goesmann, A., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Journal Article | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., Szczepanowski, R., Goesmann, A., Setubal, J. C., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Journal Article | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
[92]
2011 | Journal Article | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., and Goesmann, A. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
[91]
2011 | Journal Article | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., and Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2011 | Journal Article | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., Borth, N., Goesmann, A., Grillari, J., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2011 | Journal Article | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., Kaiser, O., Krause, L., Tille, F., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2011 | Conference Abstract | PUB-ID: 2397780
Doppmeier, D., Stracke, R., Lutter, P., Goesmann, A., Niehaus, K., and Weisshaar, B. (2011).“Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings”. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.
PUB
 
[87]
2011 | Journal Article | PUB-ID: 2036058
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J. - E., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology 155, 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2011 | Journal Article | PUB-ID: 2326455
Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M. J., Goesmann, A., Baumbach, J., and Becker, A. (2011). RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[85]
2011 | Journal Article | PUB-ID: 2307104
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., Stockwell, V. O., and Duffy, B. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2011 | Journal Article | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2011 | Journal Article | PUB-ID: 2290032
Joseph, B., Schwarz, R. F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., Frosch, M., Mueller, T., Vogel, U., et al. (2011). Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2011 | Journal Article | PUB-ID: 2300063
Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., and Nattkemper, T. W. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[81]
2011 | Journal Article | PUB-ID: 2451800
Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., and Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[80]
2011 | Journal Article | PUB-ID: 2447730
Gonzalez, J. M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez-Guerra, A., Goesmann, A., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2011 | Journal Article | PUB-ID: 2289576
Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., and Greub, G. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2011 | Journal Article | PUB-ID: 2289902
De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., Arnone, M. I., Goesmann, A., Reinhardt, R., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2011 | Journal Article | PUB-ID: 2093578
Linke, B., Giegerich, R., and Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 27, 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2011 | Journal Article | PUB-ID: 2093398
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., and Duffy, B. (2011). Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology 193, 2066.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2011 | Journal Article | PUB-ID: 2093389
Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., and Frosch, M. (2011). Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2010 | Journal Article | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics 11:91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2010 | Journal Article | PUB-ID: 1966439
Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., Stoye, J., Alves Dorella, F., Souza Rocha, F., et al. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 11:728.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2010 | Journal Article | PUB-ID: 1929692
Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A., and Goesmann, A. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research 9, 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2010 | Journal Article | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., Kaerst, U., Goesmann, A., Pühler, A., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2010 | Journal Article | PUB-ID: 1795508
Bertelli, C., Collyn, F., Croxatto, A., Rückert, C., Polkinghorne, A., Kebbi-Beghdadi, C., Goesmann, A., Vaughan, L., and Greub, G. (2010). The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE 5, e10890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2010 | Journal Article | PUB-ID: 1795628
Smits, T. H. M., Rezzonico, F., Pelludat, C., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS 308, 48-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[68]
2010 | Journal Article | PUB-ID: 1796445
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS 23, 384-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2010 | Book Chapter | PUB-ID: 1894907
Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., Linke, B., Neuweger, H., Schneiker-Bekel, S., et al. (2010). “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions” in Introduction to Marine Genomics (Advances in Marine Genomics), Cock, J. M., Tessmar-Raible, K., Boyen, C., and Viard, F. eds., vol. 1, (Netherlands: Springer Netherlands), 315-396.
PUB | DOI
 
[66]
2010 | Journal Article | PUB-ID: 1930110
Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R. F., Becker, A., Goesmann, A., Frosch, M., et al. (2010). Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY 192, 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2010 | Journal Article | PUB-ID: 1796644
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics 11, 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2010 | Journal Article | PUB-ID: 1785504
Yang, I., John, U., Beszteri, S., Glöckner, G., Krock, B., Goesmann, A., and Cembella, A. D. (2010). Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics 11, 248.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[63]
2010 | Journal Article | PUB-ID: 1785579
Farnbacher, M., Jahns, T., Willrodt, D., Daniel, R., Haas, R., Goesmann, A., Kurtz, S., and Rieder, G. (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics 11, 335.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[62]
2010 | Journal Article | PUB-ID: 1894319
Henckel, K., Küster, H., Stutz, L., and Goesmann, A. (2010). MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula. BMC Research Notes 3, 262.
PUB | PDF | DOI | PubMed | Europe PMC
 
[61]
2010 | Journal Article | PUB-ID: 1968262
Smits, T. H. M., Rezzonico, F., Kamber, T., Goesmann, A., Ishimaru, C. A., Stockwell, V. O., Frey, J. E., and Duffy, B. (2010). Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology 192, 6486-6487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2010 | Journal Article | PUB-ID: 1990186
Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., Schneider, R., Tenenbaum, D., et al. (2010). Visualization of omics data for systems biology. Nat Methods 7, S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2010 | Journal Article | PUB-ID: 1794039
Kuenne, C., Voget, S., Pischimarov, J., Oehm, S., Goesmann, A., Daniel, R., Hain, T., and Chakraborty, T. (2010). Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE 5, e12511.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2009 | Journal Article | PUB-ID: 1783187
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[57]
2009 | Journal Article | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2009 | Journal Article | PUB-ID: 1783813
Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., Schneider, J., Kalinowski, J., and Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3:82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[55]
2009 | Journal Article | PUB-ID: 2397394
Goesmann, A., Schneider, J., Trost, E., and Tauch, A. (2009). Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum 15, 279-281.
PUB
 
[54]
2009 | Journal Article | PUB-ID: 1635300
Henckel, K., Runte, K. J., Bekel, T., Dondrup, M., Jakobi, T., Küster, H., and Goesmann, A. (2009). TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology 9, 19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2009 | Journal Article | PUB-ID: 1635321
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[52]
2009 | Journal Article | PUB-ID: 1589098
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., and Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10, 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[51]
2009 | Journal Article | PUB-ID: 1635314
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[50]
2009 | Journal Article | PUB-ID: 1783022
Krawczyk, J., Goesmann, A., Nolte, R., Werber, M., and Weisshaar, B. (2009). Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine 4, 4.
PUB | PDF | DOI | PubMed | Europe PMC
 
[49]
2009 | Journal Article | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2009 | Journal Article | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B. K., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2009 | Journal Article | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W. F., Martinez-Arias, R., Bartels, D., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2009 | Journal Article | PUB-ID: 1589936
Wegmann, U., Overweg, K., Horn, N., Goesmann, A., Narbad, A., Gasson, M. J., and Shearman, C. (2009). Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY 191, 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2009 | Journal Article | PUB-ID: 1634461
Dondrup, M., Hueser, A. T., Mertens, D., and Goesmann, A. (2009). An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY 140, 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2008 | Journal Article | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., Krause, L., Kroemeke, H., Kruse, O., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
[43]
2008 | Journal Article | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2008 | Journal Article | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., and Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24, 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2008 | Journal Article | PUB-ID: 1586785
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., and Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36, W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[40]
2008 | Journal Article | PUB-ID: 1783364
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., and Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36, 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[39]
2008 | Journal Article | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., Selbitschka, W., Weidner, S., Schlüter, A., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2008 | Journal Article | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., Patschkowski, T., Rückert, C., Schmid, J., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2008 | Journal Article | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., Bekel, T., Brinkrolf, K., Brune, I., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2008 | Journal Article | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2008 | Journal Article | PUB-ID: 1783292
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J. V., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[34]
2008 | Journal Article | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., and Beutin, L. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2008 | Journal Article | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105, 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[32]
2008 | Conference Paper | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
PUB
 
[31]
2007 | Journal Article | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2007 | Journal Article | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., Dondrup, M., Henckel, K., Goesmann, A., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry 68, 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 
[29]
2007 | Journal Article | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[28]
2007 | Journal Article | PUB-ID: 1631047
Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., Howley, P., Chaplin, P., Suter, M., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY 88, 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2007 | Journal Article | PUB-ID: 1594098
Wegmann, U., O'Connell-Motherwy, M., Zomer, A., Buist, G., Shearman, C., Canchaya, C., Ventura, M., Goesmann, A., Gasson, M. J., Kuipers, O. P., et al. (2007). Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY 189, 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2007 | Journal Article | PUB-ID: 1593268
Bahl, M. I., Hansen, L. H., Goesmann, A., and Sorensen, S. J. (2007). The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID 58, 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Journal Article | PUB-ID: 1593149
Moran, M. A., Belas, R., Schell, M. A., Gonzalez, J. M., Sun, F., Sun, S., Binder, B. J., Edmonds, J., Ye, W., Orcutt, B., et al. (2007). Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 73, 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2006 | Journal Article | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., and Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica 4, 4-6.
PUB
 
[23]
2006 | Journal Article | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24, 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2006 | Journal Article | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., Friedrich, F., Hurek, T., Krause, L., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology 24, 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2006 | Conference Abstract | PUB-ID: 1596017
Schoen, C., Claus, H., Goesmann, A., Mueller, T., Brandt, P., Otto-Karg, I., Schramm-Glueck, A., Vogel, U., and Frosch, M. (2006). Genome comparison of non-pathogenic and pathogenic meningococci. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 296, 134.
PUB | WoS
 
[20]
2006 | Journal Article | PUB-ID: 1598354
Hohnjec, N., Henckel, K., Bekel, T., Gouzy, J., Dondrup, M., Goesmann, A., and Küster, H. (2006). Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY 33, 737-748.
PUB | PDF | DOI | WoS
 
[19]
2006 | Journal Article | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C. T., Billion, A., Ghai, R., Chatterjee, S. S., Domann, E., Kaerst, U., Goesmann, A., Bekel, T., et al. (2006). Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology 188, 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Journal Article | PUB-ID: 1773644
Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A., and Meyer, F. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research 33, W710-W716.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[17]
2005 | Journal Article | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY 187, 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Journal Article | PUB-ID: 1773302
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21, 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Journal Article | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., Bischoff, N., Brune, I., Chakraborty, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[14]
2005 | Journal Article | PUB-ID: 1773652
Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. - Y., Cohoon, M., Crécy-Lagard, V. de, Diaz, N. N., Disz, T., Edwards, R., et al. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research 33, 5691-5702.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2004 | Bielefeld Dissertation | PUB-ID: 2301314
Goesmann, A. (2004). BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
[12]
2004 | Journal Article | PUB-ID: 1607424
McHardy, A. C., Goesmann, A., Pühler, A., and Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20, 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2004 | Journal Article | PUB-ID: 1605656
Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., and Schlüter, A. (2004). Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150, 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[10]
2004 | Journal Article | PUB-ID: 1608953
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., Lambert, C., Evans, K. J., Goesmann, A., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE 303, 689-692.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2004 | Journal Article | PUB-ID: 1608756
Westberg, J., Persson, A., Holmberg, A., Goesmann, A., Lundeberg, J., Johansson, K. E., Pettersson, B., and Uhlen, M. (2004). The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH 14, 221-227.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2003 | Journal Article | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., Sczyrba, A., Pühler, A., and Meyer, F. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Journal Article | PUB-ID: 1609286
Goesmann, A., Linke, B., Rupp, O., Krause, L., Bartels, D., Dondrup, M., McHardy, A. C., Wilke, A., Pühler, A., and Meyer, F. (2003). Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY 106, 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Journal Article | PUB-ID: 1609251
Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., and Meyer, F. (2003). Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY 106, 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Journal Article | PUB-ID: 1612324
Tauch, A., Schlüter, A., Bischoff, N., Goesmann, A., Meyer, F., and Pühler, A. (2003). The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. MOLECULAR GENETICS AND GENOMICS 268, 570-584.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[4]
2003 | Journal Article | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., Linke, B., Rupp, O., Giegerich, R., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[3]
2003 | Journal Article | PUB-ID: 1609272
Wilke, A., Rückert, C., Bartels, D., Dondrup, M., Goesmann, A., Hüser, A. T., Kespohl, S., Linke, B., Mahne, M., McHardy, A., et al. (2003). Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY 106, 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2003 | Journal Article | PUB-ID: 1895035
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology 104, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[1]
2002 | Journal Article | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., and Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS 18, 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 

Search

Filter Publications

Display / Sort

Export / Embed