155 Publikationen

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[155]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320
Cardoso, S. D., Goncalves, D., Goesmann, A., Canario, A. V. M., & Oliveira, R. F. (2018). Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish. MOLECULAR ECOLOGY, 27(3), 789-803. doi:10.1111/mec.14408
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526
Golyshina, O. V., Tran, H., Reva, O. N., Lemak, S., Yakunin, A. F., Goesmann, A., Nechitaylo, T. Y., et al. (2017). Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T. SCIENTIFIC REPORTS, 7, 3682. doi:10.1038/s41598-017-03904-5
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., & Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements, 4(3), e00524-16. doi:10.1128/genomea.00524-16
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[152]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4). doi:10.1128/genomeA.00680-15
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., et al. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. doi:10.1016/j.jbiotec.2015.06.423
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., et al. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics, 16, 1038. doi:10.1186/s12864-015-2254-1
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[149]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279
Huja, S., Oren, Y., Trost, E., Brzuszkiewicz, E., Biran, D., Blom, J., Goesmann, A., et al. (2015). Genomic Avenue to Avian Colisepticemia. mBio, 6(1), e01681-14. doi:10.1128/mBio.01681-14
PUB | DOI | WoS | PubMed | Europe PMC
 
[148]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423
Chakarov, N., Linke, B., Boerner, M., Goesmann, A., Krüger, O., & Hoffman, J. (2015). Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite. Molecular Ecology, 24(6), 1355-1363. doi:10.1111/mec.13115
PUB | DOI | WoS | PubMed | Europe PMC
 
[147]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174
Christiansen, G., Goesmann, A., & Kurmayer, R. (2014). Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix. Applied and environmental microbiology, 80(16), 4887-4897. doi:10.1128/AEM.01188-14
PUB | DOI | WoS | PubMed | Europe PMC
 
[146]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652
Bonte, A., Neuweger, H., Goesmann, A., Thonar, C., Mäder, P., Langenkämper, G., & Niehaus, K. (2014). Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture, 94(13), 2605-2612. doi:10.1002/jsfa.6566
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. doi:10.1016/j.jbiotec.2014.02.021
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., et al. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE, 9(1), e85568. doi:10.1371/journal.pone.0085568
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682
Wegmann, U., Louis, P., Goesmann, A., Henrissat, B., Duncan, S. H., & Flint, H. J. (2014). Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. Environmental microbiology, 16(9), 2879-2890. doi:10.1111/1462-2920.12217
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature, 505(7484), 546-549. doi:10.1038/nature12817
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements, 2(1). doi:10.1128/genomeA.01174-13
PUB | DOI | PubMed | Europe PMC
 
[140]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., et al. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology, 178, 41-42. doi:10.1016/j.jbiotec.2014.03.011
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles, 18(5), 853-863. doi:10.1007/s00792-014-0676-3
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology, 167(2), 142-155. doi:10.1016/j.jbiotec.2012.12.010
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution, 68(3), 657-670. doi:10.1016/j.ympev.2013.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., & Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology, 36(7), 449-456. doi:10.1016/j.syapm.2013.04.003
PUB | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. doi:10.1038/nbt1213-1148e
PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology, 168(4), 729-730. doi:10.1016/j.jbiotec.2013.10.016
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., et al. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology, 62(4), 786-798. doi:10.1111/ppa.12002
PUB | DOI | WoS
 
[132]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695. doi:10.1038/nbt.2645
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE, 8(3), e57487. doi:10.1371/journal.pone.0057487
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., et al. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements, 1(1), e00165-12. doi:10.1128/genomeA.00165-12
PUB | DOI | PubMed | Europe PMC
 
[129]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., & Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal, 11(6), 717-733. doi:10.1111/pbi.12062
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology, 168(4), 739-740. doi:10.1016/j.jbiotec.2013.10.004
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. doi:10.1038/nbt.2522
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE, 8(2), e55644. doi:10.1371/journal.pone.0055644
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., et al. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics, 14(1), 47. doi:10.1186/1471-2164-14-47
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1), 926. doi:10.1186/1471-2164-14-926
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[123]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., & Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics, 29(19), 2452-2459. doi:10.1093/bioinformatics/btt414
PUB | DOI | WoS | PubMed | Europe PMC
 
[122]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., et al. (In Press). Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., et al. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. doi:10.1016/j.jbiotec.2012.01.020
PUB | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., et al. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta, 236(4), 959-973. doi:10.1007/s00425-012-1648-4
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., & Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE, 7(3), e33351. doi:10.1371/journal.pone.0033351
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 7(1). doi:10.1371/annotation/2c1232ba-94f0-4613-8486-0f430b1b47ed
PUB | DOI | PubMed | Europe PMC
 
[116]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology, 161(2), 153-166. doi:10.1016/j.jbiotec.2012.03.007
PUB | DOI | WoS | PubMed | Europe PMC
 
[115]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., et al. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology, 79(3), 785-799. doi:10.1111/j.1574-6941.2011.01265.x
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., & Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology, 194(13), 3555. doi:10.1128/JB.00550-12
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., & Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), 512-526. doi:10.1074/mcp.M111.014134
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[112]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., & Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology, 155(3), 247-256. doi:10.1016/j.ijfoodmicro.2012.01.024
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., et al. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. doi:10.1111/j.1567-1364.2012.00791.x
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., et al. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics, 8(2), 310-322. doi:10.1007/s11306-011-0311-6
PUB | DOI | WoS
 
[108]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
Kahlke, T., Goesmann, A., Hjerde, E., Willassen, N. P., & Haugen, P. (2012). Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics, 13(1), 179. doi:10.1186/1471-2164-13-179
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics, 13(1), 144. doi:10.1186/1471-2164-13-144
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell, 11(12), 1582-1583. doi:10.1128/EC.00258-12
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
Rezzonico, F., Braun-Kiewnick, A., Mann, R. A., Rodoni, B., Goesmann, A., Duffy, B., & Smits, T. H. M. (2012). Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology, 13(8), 975-984. doi:10.1111/j.1364-3703.2012.00807.x
PUB | DOI | WoS | PubMed | Europe PMC
 
[104]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), 1615-1616. doi:10.1128/JB.06715-11
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[103]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., et al. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology, 194(18), 5144-5145. doi:10.1128/JB.01099-12
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
Zischka, M., Kuenne, C., Blom, J., Dabrowski, P. W., Linke, B., Hain, T., Nitsche, A., et al. (2012). Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology, 194(19), 5490-5491. doi:10.1128/JB.01298-12
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., et al. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. doi:10.1371/journal.pone.0041606
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene, 504(1), 6-12. doi:10.1016/j.gene.2012.05.002
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[99]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., et al. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1), 30. doi:10.1186/1477-5956-9-30
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[98]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., & Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics, 12(1), 579-589. doi:10.1186/1471-2164-12-579
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[97]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., & Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), 52-60. doi:10.1111/j.1574-6968.2011.02352.x
PUB | DOI | WoS | PubMed | Europe PMC
 
[96]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. doi:10.1016/j.jbiotec.2011.01.010
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[95]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. doi:10.1016/j.jbiotec.2011.04.014
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[94]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. doi:10.1016/j.jbiotec.2011.09.014
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., et al. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology, 13(6), 1454-1466. doi:10.1111/j.1462-2920.2011.02446.x
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[92]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 6(10), e25724. doi:10.1371/journal.pone.0025724
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[91]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., et al. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. doi:10.1016/j.jbiotec.2010.10.076
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[90]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
Gonzalez, J. M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology, 77(24), 8676-8686. doi:10.1128/aem.06152-11
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[89]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., et al. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE, 6(7), e22247. doi:10.1371/journal.pone.0022247
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[88]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M. J., Goesmann, A., Baumbach, J., et al. (2011). RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology, 155(1), 127-134. doi:10.1016/j.jbiotec.2010.11.004
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[87]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings, 5(Suppl. 8), P6. doi:10.1186/1753-6561-5-S8-P6
PUB | DOI
 
[86]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
Doppmeier, D., Stracke, R., Lutter, P., Goesmann, A., Niehaus, K., & Weisshaar, B. (2011). Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.
PUB
 
[85]
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F. J. de Bruijn (Ed.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (pp. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39
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[84]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
Joseph, B., Schwarz, R. F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., et al. (2011). Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE, 6(4), e18441. doi:10.1371/journal.pone.0018441
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., & Frosch, M. (2011). Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology, 193(8), 2064-2065. doi:10.1128/JB.00084-11
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[82]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling, 27(4), 367-374. doi:10.1080/08927014.2011.577211
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[81]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., & Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), 1351-1358. doi:10.1093/bioinformatics/btr151
PUB | DOI | WoS | PubMed | Europe PMC
 
[80]
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. doi:10.1016/j.jbiotec.2010.12.018
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. doi:10.1371/journal.pone.0014519
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[78]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology, 153(1-2), 62-75. doi:10.1016/j.jbiotec.2011.02.011
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), 11-19. doi:10.1016/j.jbiotec.2011.03.016
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., & Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics, 27(7), 903-911. doi:10.1093/bioinformatics/btr040
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., & Duffy, B. (2011). Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology, 193(8), 2066. doi:10.1128/JB.00123-11
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[74]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., et al. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), 1660-1672. doi:10.4238/vol9-3gmr901
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[73]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., et al. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics, 11(1), 728. doi:10.1186/1471-2164-11-728
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
Bertelli, C., Collyn, F., Croxatto, A., Rückert, C., Polkinghorne, A., Kebbi-Beghdadi, C., Goesmann, A., et al. (2010). The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE, 5(5), e10890. doi:10.1371/journal.pone.0010890
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
Smits, T. H. M., Rezzonico, F., Pelludat, C., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS, 308(1), 48-54. doi:10.1111/j.1574-6968.2010.01994.x
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[70]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11(1), 91. doi:10.1186/1471-2164-11-91
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[69]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504
Yang, I., John, U., Beszteri, S., Glöckner, G., Krock, B., Goesmann, A., & Cembella, A. D. (2010). Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics, 11(1), 248. doi:10.1186/1471-2164-11-248
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[68]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS, 23(4), 384-393. doi:10.1094/MPMI-23-4-0384
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[67]
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., et al. (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In J. M. Cock, K. Tessmar-Raible, C. Boyen, & F. Viard (Eds.), Introduction to Marine Genomics (Advances in Marine Genomics) (Vol. 1, pp. 315-396). Netherlands: Springer Netherlands. doi:10.1007/978-90-481-8639-6_9
PUB | DOI
 
[66]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics, 11(1), 2. doi:10.1186/1471-2164-11-2
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[65]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579
Farnbacher, M., Jahns, T., Willrodt, D., Daniel, R., Haas, R., Goesmann, A., Kurtz, S., et al. (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics, 11(1), 335. doi:10.1186/1471-2164-11-335
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology, 192(5), 1473-1474. doi:10.1128/JB.01415-09
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[63]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
Kuenne, C., Voget, S., Pischimarov, J., Oehm, S., Goesmann, A., Daniel, R., Hain, T., et al. (2010). Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE, 5(9), e12511. doi:10.1371/journal.pone.0012511
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319
Henckel, K., Küster, H., Stutz, L., & Goesmann, A. (2010). MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula. BMC Research Notes, 3(1), 262. doi:10.1186/1756-0500-3-262
PUB | PDF | DOI | PubMed | Europe PMC
 
[61]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
Smits, T. H. M., Rezzonico, F., Kamber, T., Goesmann, A., Ishimaru, C. A., Stockwell, V. O., Frey, J. E., et al. (2010). Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology, 192(24), 6486-6487. doi:10.1128/JB.01122-10
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[60]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., et al. (2010). Visualization of omics data for systems biology. Nat Methods, 7(3s), S56-S68. doi:10.1038/NMETH.1436
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[59]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R. F., et al. (2010). Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY, 192(20), 5363-5377. doi:10.1128/JB.00883-10
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
Goesmann, A., Schneider, J., Trost, E., & Tauch, A. (2009). Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum, 15(3), 279-281.
PUB
 
[57]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022
Krawczyk, J., Goesmann, A., Nolte, R., Werber, M., & Weisshaar, B. (2009). Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine, 4(1), 4. doi:10.1186/1751-0473-4-4
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[56]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., et al. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1), 82. doi:10.1186/1752-0509-3-82
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[55]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., & Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1), 154. doi:10.1186/1471-2105-10-154
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[54]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300
Henckel, K., Runte, K. J., Bekel, T., Dondrup, M., Jakobi, T., Küster, H., & Goesmann, A. (2009). TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology, 9(1), 19. doi:10.1186/1471-2229-9-19
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[53]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY, 11(5), 1038-1055. doi:10.1111/j.1462-2920.2008.01825.x
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[52]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 45-50. doi:10.1016/j.jbiotec.2008.11.006
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[51]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., & Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics, 10(1), 56. doi:10.1186/1471-2105-10-56
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[50]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1), 50. doi:10.1186/1471-2105-10-50
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[49]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., & Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics, 10(1), 430. doi:10.1186/1471-2105-10-430
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[48]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., et al. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. doi:10.1093/bioinformatics/btp568
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[47]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
Wegmann, U., Overweg, K., Horn, N., Goesmann, A., Narbad, A., Gasson, M. J., & Shearman, C. (2009). Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY, 191(22), 7142-7143. doi:10.1128/JB.01182-09
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. doi:10.1016/j.jbiotec.2009.01.006
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
Dondrup, M., Hueser, A. T., Mertens, D., & Goesmann, A. (2009). An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 18-26. doi:10.1016/j.jbiotec.2009.01.009
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., et al. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), 2726-2732. doi:10.1093/bioinformatics/btn452
PUB | DOI | WoS | PubMed | Europe PMC
 
[43]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics, 9(1), 449. doi:10.1186/1471-2164-9-449
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology, 134(1-2), 33-45. doi:10.1016/j.jbiotec.2007.12.013
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(9), 3473-3478. doi:10.1073/pnas.0800151105
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[40]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 91-101. doi:10.1016/j.jbiotec.2008.06.003
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology, 136(1-2), 31-37. doi:10.1016/j.jbiotec.2008.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136(1-2), 77-90. doi:10.1016/j.jbiotec.2008.05.008
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology, 136(1-2), 11-21. doi:10.1016/j.jbiotec.2008.02.009
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., & Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH, 36(Web Server), W433-W437. doi:10.1093/nar/gkn284
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[35]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology, 136(1-2), 22-30. doi:10.1016/j.jbiotec.2008.03.004
PUB | DOI | WoS | PubMed | Europe PMC
 
[34]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., et al. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research, 36(7), 2230-2239. doi:10.1093/nar/gkn038
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., et al. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress
PUB
 
[32]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., et al. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity, 76(12), 5466-5477. doi:10.1128/IAI.00875-08
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY, 88(12), 3249-3259. doi:10.1099/vir.0.83156-0
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. doi:10.1186/1752-0509-1-55
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. doi:10.1038/nbt1354
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
Moran, M. A., Belas, R., Schell, M. A., Gonzalez, J. M., Sun, F., Sun, S., Binder, B. J., et al. (2007). Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(14), 4559-4569. doi:10.1128/AEM.02580-06
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
Wegmann, U., O'Connell-Motherwy, M., Zomer, A., Buist, G., Shearman, C., Canchaya, C., Ventura, M., et al. (2007). Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY, 189(8), 3256-3270. doi:10.1128/JB.01768-06
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
Bahl, M. I., Hansen, L. H., Goesmann, A., & Sorensen, S. J. (2007). The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID, 58(1), 31-43. doi:10.1016/j.plasmid.2006.11.007
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry, 68(1), 19-32. doi:10.1016/j.phytochem.2006.09.026
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology, 24(8), 997-1004. doi:10.1038/nbt1232
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354
Hohnjec, N., Henckel, K., Bekel, T., Gouzy, J., Dondrup, M., Goesmann, A., & Küster, H. (2006). Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY, 33(8), 737-748. doi:10.1071/FP06079
PUB | PDF | DOI | WoS
 
[22]
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017
Schoen, C., Claus, H., Goesmann, A., Mueller, T., Brandt, P., Otto-Karg, I., Schramm-Glueck, A., et al. (2006). Genome comparison of non-pathogenic and pathogenic meningococci. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 296(Suppl. 42), 134.
PUB | WoS
 
[21]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., & Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica, 4, 4-6.
PUB
 
[20]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology, 24(11), 1385-1391. doi:10.1038/nbt1243
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C. T., Billion, A., Ghai, R., Chatterjee, S. S., Domann, E., et al. (2006). Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology, 188(23), 8299-8302. doi:10.1128/JB.00758-06
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), 853-859. doi:10.1093/bioinformatics/bti091
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[17]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY, 187(21), 7254-7266. doi:10.1128/JB.187.21.7254-7266.2005
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652
Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. - Y., Cohoon, M., Crécy-Lagard, V. de, et al. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research, 33(17), 5691-5702. doi:10.1093/nar/gki866
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology, 187(13), 4671-4682. doi:10.1128/JB.187.13.4671-4682.2005
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[14]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644
Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., et al. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research, 33(Web Server), W710-W716. doi:10.1093/nar/gki400
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2004 | Bielefelder E-Dissertation | PUB-ID: 2301314
Goesmann, A. (2004). BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
[12]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
Westberg, J., Persson, A., Holmberg, A., Goesmann, A., Lundeberg, J., Johansson, K. E., Pettersson, B., et al. (2004). The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH, 14(2), 221-227. doi:10.1101/gr.1673304
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE, 303(5658), 689-692. doi:10.1126/science.1093027
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., & Schlüter, A. (2004). Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology, 150(11), 3613-3630. doi:10.1099/mic.0.27317-0
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[9]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
McHardy, A. C., Goesmann, A., Pühler, A., & Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS, 20(10), 1622-1631. doi:10.1093/bioinformatics/bth137
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
Goesmann, A., Linke, B., Rupp, O., Krause, L., Bartels, D., Dondrup, M., McHardy, A. C., et al. (2003). Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 157-167. doi:10.1016/j.jbiotec.2003.08.007
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., & Meyer, F. (2003). Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 121-133. doi:10.1016/j.jbiotec.2003.08.008
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., et al. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 135-146. doi:10.1016/j.jbiotec.2003.08.010
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
Wilke, A., Rückert, C., Bartels, D., Dondrup, M., Goesmann, A., Hüser, A. T., Kespohl, S., et al. (2003). Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 147-156. doi:10.1016/j.jbiotec.2003.08.009
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
Tauch, A., Schlüter, A., Bischoff, N., Goesmann, A., Meyer, F., & Pühler, A. (2003). The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Molecular Genetics and Genomics, 268(5), 570-584. doi:10.1007/s00438-002-0785-z
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[3]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), 2187-2195. doi:10.1093/nar/gkg312
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[2]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology, 104(1-3), 5-25. doi:10.1016/S0168-1656(03)00154-8
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[1]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., & Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS, 18(1), 124-129. doi:10.1093/bioinformatics/18.1.124
PUB | DOI | WoS | PubMed | Europe PMC
 

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[155]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320
Cardoso, S. D., Goncalves, D., Goesmann, A., Canario, A. V. M., & Oliveira, R. F. (2018). Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish. MOLECULAR ECOLOGY, 27(3), 789-803. doi:10.1111/mec.14408
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526
Golyshina, O. V., Tran, H., Reva, O. N., Lemak, S., Yakunin, A. F., Goesmann, A., Nechitaylo, T. Y., et al. (2017). Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T. SCIENTIFIC REPORTS, 7, 3682. doi:10.1038/s41598-017-03904-5
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., & Kruse, O. (2016). Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements, 4(3), e00524-16. doi:10.1128/genomea.00524-16
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[152]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements, 3(4). doi:10.1128/genomeA.00680-15
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., et al. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. doi:10.1016/j.jbiotec.2015.06.423
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
Pauli, M., Chakarov, N., Rupp, O., Kalinowski, J., Goesmann, A., Sorenson, M., Krüger, O., et al. (2015). De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite. BMC Genomics, 16, 1038. doi:10.1186/s12864-015-2254-1
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[149]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279
Huja, S., Oren, Y., Trost, E., Brzuszkiewicz, E., Biran, D., Blom, J., Goesmann, A., et al. (2015). Genomic Avenue to Avian Colisepticemia. mBio, 6(1), e01681-14. doi:10.1128/mBio.01681-14
PUB | DOI | WoS | PubMed | Europe PMC
 
[148]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423
Chakarov, N., Linke, B., Boerner, M., Goesmann, A., Krüger, O., & Hoffman, J. (2015). Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite. Molecular Ecology, 24(6), 1355-1363. doi:10.1111/mec.13115
PUB | DOI | WoS | PubMed | Europe PMC
 
[147]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174
Christiansen, G., Goesmann, A., & Kurmayer, R. (2014). Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix. Applied and environmental microbiology, 80(16), 4887-4897. doi:10.1128/AEM.01188-14
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[146]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652
Bonte, A., Neuweger, H., Goesmann, A., Thonar, C., Mäder, P., Langenkämper, G., & Niehaus, K. (2014). Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems. Journal of the science of food and agriculture, 94(13), 2605-2612. doi:10.1002/jsfa.6566
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[145]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology, 178, 23-31. doi:10.1016/j.jbiotec.2014.02.021
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[144]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
Rupp, O., Becker, J., Brinkrolf, K., Timmermann, C., Borth, N., Pühler, A., Noll, T., et al. (2014). Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines. PLoS ONE, 9(1), e85568. doi:10.1371/journal.pone.0085568
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[143]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682
Wegmann, U., Louis, P., Goesmann, A., Henrissat, B., Duncan, S. H., & Flint, H. J. (2014). Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. Environmental microbiology, 16(9), 2879-2890. doi:10.1111/1462-2920.12217
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[142]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature, 505(7484), 546-549. doi:10.1038/nature12817
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[141]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A. - K., Bunk, B., Schobert, M., et al. (2014). Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements, 2(1). doi:10.1128/genomeA.01174-13
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[140]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Fischer, N., Steinkämper, A., Pühler, A., et al. (2014). Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. Journal of biotechnology, 178, 41-42. doi:10.1016/j.jbiotec.2014.03.011
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[139]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel, B., Sahm, K., Basner, A., Wiebusch, S., John, P., Lorenz, U., Peters, A., et al. (2014). Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles, 18(5), 853-863. doi:10.1007/s00792-014-0676-3
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[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
Wibberg, D., Jelonek, L., Rupp, O., Kröber, M., Eikmeyer, F. G., Goesmann, A., Hartmann, A., et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. Journal of Biotechnology, 167(2), 142-155. doi:10.1016/j.jbiotec.2012.12.010
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
Vences, M., Hauswaldt, S., Steinfartz, S., Rupp, O., Goesmann, A., Künzel, S., Orozco-Terwengel, P., et al. (2013). Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana. Molecular phylogenetics and evolution, 68(3), 657-670. doi:10.1016/j.ympev.2013.04.014
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[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
Smits, T. H. M., Rezzonico, F., López, M. M., Blom, J., Goesmann, A., Frey, J. E., & Duffy, B. (2013). Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology, 36(7), 449-456. doi:10.1016/j.syapm.2013.04.003
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[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. doi:10.1038/nbt1213-1148e
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[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
Köhler, K. A. K., Rückert, C., Schatschneider, S., Vorhölter, F. - J., Szczepanowski, R., Blank, L. M., Niehaus, K., et al. (2013). Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil. Journal of Biotechnology, 168(4), 729-730. doi:10.1016/j.jbiotec.2013.10.016
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[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., et al. (2013). Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology, 62(4), 786-798. doi:10.1111/ppa.12002
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[132]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
Brinkrolf, K., Rupp, O., Laux, H., Kollin, F., Ernst, W., Linke, B., Kofler, R., et al. (2013). Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695. doi:10.1038/nbt.2645
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[131]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
Riedel, T., Gómez-Consarnau, L., Tomasch, J., Martin, M., Jarek, M., González, J. M., Spring, S., et al. (2013). Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLOS ONE, 8(3), e57487. doi:10.1371/journal.pone.0057487
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[130]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
Fritzenwanker, M., Kuenne, C., Billion, A., Hain, T., Zimmermann, K., Goesmann, A., Chakraborty, T., et al. (2013). Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. Genome Announcements, 1(1), e00165-12. doi:10.1128/genomeA.00165-12
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[129]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
Toepel, J., Illmer-Kephalides, M., Jaenicke, S., Straube, J., May, P., Goesmann, A., & Kruse, O. (2013). New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. Plant Biotechnology Journal, 11(6), 717-733. doi:10.1111/pbi.12062
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
Rückert, C., Szczepanowski, R., Albersmeier, A., Goesmann, A., Iftime, D., Musiol, E. M., Blin, K., et al. (2013). Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids. Journal of Biotechnology, 168(4), 739-740. doi:10.1016/j.jbiotec.2013.10.004
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[127]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. doi:10.1038/nbt.2522
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[126]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE, 8(2), e55644. doi:10.1371/journal.pone.0055644
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[125]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., et al. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics, 14(1), 47. doi:10.1186/1471-2164-14-47
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[124]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
Bogen, C., Al-Dilaimi, A., Albersmeier, A., Wichmann, J., Grundmann, M., Rupp, O., Lauersen, K. J., et al. (2013). Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 14(1), 926. doi:10.1186/1471-2164-14-926
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[123]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
Kessler, N., Bonte, A., Langenkämper, G., Niehaus, K., Goesmann, A., & Nattkemper, T. W. (2013). MeltDB 2.0 - Advances of the metabolomics software system. Bioinformatics, 29(19), 2452-2459. doi:10.1093/bioinformatics/btt414
PUB | DOI | WoS | PubMed | Europe PMC
 
[122]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
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[121]
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
Bonte, A., Kessler, N., Nattkemper, T. W., Goesmann, A., Cecile, T., Mäder, P., Niehaus, K., et al. (In Press). Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen. Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F. G., Szczepanowski, R., Al-Soud, W. A., et al. (2012). Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology, 158(4), 248-258. doi:10.1016/j.jbiotec.2012.01.020
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[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
Rose, M. T., Rose, T. J., Pariasca-Tanaka, J., Yoshihashi, T., Neuweger, H., Goesmann, A., Frei, M., et al. (2012). Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess. Planta, 236(4), 959-973. doi:10.1007/s00425-012-1648-4
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[118]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., & Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE, 7(3), e33351. doi:10.1371/journal.pone.0033351
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[117]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2012). Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 7(1). doi:10.1371/annotation/2c1232ba-94f0-4613-8486-0f430b1b47ed
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[116]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
Heinl, S., Wibberg, D., Eikmeyer, F. G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology, 161(2), 153-166. doi:10.1016/j.jbiotec.2012.03.007
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[115]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
Rademacher, A., Zakrzewski, M., Schlüter, A., Schonberg, M., Szczepanowski, R., Goesmann, A., Pühler, A., et al. (2012). Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiology Ecology, 79(3), 785-799. doi:10.1111/j.1574-6941.2011.01265.x
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[114]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T. H. M., & Bagheri, H. C. (2012). Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology, 194(13), 3555. doi:10.1128/JB.00550-12
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[113]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., & Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics, 11(8), 512-526. doi:10.1074/mcp.M111.014134
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[112]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., & Duffy, B. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology, 155(3), 247-256. doi:10.1016/j.ijfoodmicro.2012.01.024
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
Schneider, J., Rupp, O., Trost, E., Jaenicke, S., Passoth, V., Goesmann, A., Tauch, A., et al. (2012). Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities. FEMS Yeast Research, 12(3), 382-386. doi:10.1111/j.1567-1364.2012.00791.x
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[110]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
Hackl, M., Jadhav, V., Jakobi, T., Rupp, O., Brinkrolf, K., Goesmann, A., Pühler, A., et al. (2012). Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines. Journal of Biotechnology, 158(3), 151-155. doi:10.1016/j.jbiotec.2012.01.019
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
Persicke, M., Rückert, C., Plassmeier, J., Stutz, L., Kessler, N., Kalinowski, J., Goesmann, A., et al. (2012). MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics, 8(2), 310-322. doi:10.1007/s11306-011-0311-6
PUB | DOI | WoS
 
[108]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
Kahlke, T., Goesmann, A., Hjerde, E., Willassen, N. P., & Haugen, P. (2012). Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation. BMC genomics, 13(1), 179. doi:10.1186/1471-2164-13-179
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[107]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
Hain, T., Ghai, R., Billion, A., Kuenne, C. T., Steinweg, C., Izar, B., Mohamed, W., et al. (2012). Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes. BMC Genomics, 13(1), 144. doi:10.1186/1471-2164-13-144
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[106]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., et al. (2012). Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell, 11(12), 1582-1583. doi:10.1128/EC.00258-12
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[105]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
Rezzonico, F., Braun-Kiewnick, A., Mann, R. A., Rodoni, B., Goesmann, A., Duffy, B., & Smits, T. H. M. (2012). Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Molecular plant pathology, 13(8), 975-984. doi:10.1111/j.1364-3703.2012.00807.x
PUB | DOI | WoS | PubMed | Europe PMC
 
[104]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), 1615-1616. doi:10.1128/JB.06715-11
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[103]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., et al. (2012). Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology, 194(18), 5144-5145. doi:10.1128/JB.01099-12
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[102]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
Zischka, M., Kuenne, C., Blom, J., Dabrowski, P. W., Linke, B., Hain, T., Nitsche, A., et al. (2012). Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology, 194(19), 5490-5491. doi:10.1128/JB.01298-12
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[101]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., et al. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. doi:10.1371/journal.pone.0041606
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[100]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene, 504(1), 6-12. doi:10.1016/j.gene.2012.05.002
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[99]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., et al. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science, 9(1), 30. doi:10.1186/1477-5956-9-30
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[98]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., & Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics, 12(1), 579-589. doi:10.1186/1471-2164-12-579
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[97]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., & Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), 52-60. doi:10.1111/j.1574-6968.2011.02352.x
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[96]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology, 155(1), 50-62. doi:10.1016/j.jbiotec.2011.01.010
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[95]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. doi:10.1016/j.jbiotec.2011.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
Becker, J., Hackel, M., Jakobi, T., Rupp, O., Schneider, J., Szczepanowski, R., Bekel, T., et al. (2011). Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Journal of Biotechnology, 156(3), 227-235. doi:10.1016/j.jbiotec.2011.09.014
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., et al. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environmental Microbiology, 13(6), 1454-1466. doi:10.1111/j.1462-2920.2011.02446.x
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[92]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
Ausec, L., Zakrzewski, M., Goesmann, A., Schlüter, A., & Mandic-Mulec, I. (2011). Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. PLoS ONE, 6(10), e25724. doi:10.1371/journal.pone.0025724
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[91]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., et al. (2011). RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology, 155(1), 118-126. doi:10.1016/j.jbiotec.2010.10.076
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[90]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
Gonzalez, J. M., Pinhassi, J., Fernández-Gómez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134. Applied and Environmental Microbiology, 77(24), 8676-8686. doi:10.1128/aem.06152-11
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[89]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., et al. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE, 6(7), e22247. doi:10.1371/journal.pone.0022247
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M. J., Goesmann, A., Baumbach, J., et al. (2011). RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology, 155(1), 127-134. doi:10.1016/j.jbiotec.2010.11.004
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
Becker, J., Timmermann, C., Jakobi, T., Rupp, O., Szczepanowski, R., Hackl, M., Goesmann, A., et al. (2011). Next-generation sequencing of the CHO cell transcriptome. BMC Proceedings, 5(Suppl. 8), P6. doi:10.1186/1753-6561-5-S8-P6
PUB | DOI
 
[86]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
Doppmeier, D., Stracke, R., Lutter, P., Goesmann, A., Niehaus, K., & Weisshaar, B. (2011). Using the GUS Reporter Gene for Quantitative Studies of Promotor Activity in A.thaliana Seedlings. Presented at the ICSB 2011 Heidelberg/Mannheim, Heidelberg/Mannheim, Germany.
PUB
 
[85]
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
Jaenicke, S., Zakrzewski, M., Jünemann, S., Pühler, A., Goesmann, A., & Schlüter, A. (2011). Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods. In F. J. de Bruijn (Ed.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (pp. 403-414). Wiley-Blackwell. doi:10.1002/9781118010549.ch39
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[84]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
Joseph, B., Schwarz, R. F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., et al. (2011). Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE, 6(4), e18441. doi:10.1371/journal.pone.0018441
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., & Frosch, M. (2011). Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology, 193(8), 2064-2065. doi:10.1128/JB.00084-11
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
De Gregoris, T. B., Rupp, O., Klages, S., Knaust, F., Bekel, T., Kube, M., Burgess, J. G., et al. (2011). Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling, 27(4), 367-374. doi:10.1080/08927014.2011.577211
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[81]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., & Goesmann, A. (2011). Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics, 27(10), 1351-1358. doi:10.1093/bioinformatics/btr151
PUB | DOI | WoS | PubMed | Europe PMC
 
[80]
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., et al. (In Press). The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology, 155(1), 20-33. doi:10.1016/j.jbiotec.2010.12.018
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
Jaenicke, S., Ander, C., Bekel, T., Bisdorf, R., Dröge, M., Gartemann, K. - H., Jünemann, S., et al. (2011). Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing. PLoS ONE, 6(1), e14519. doi:10.1371/journal.pone.0014519
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S. H., et al. (2011). Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology, 153(1-2), 62-75. doi:10.1016/j.jbiotec.2011.02.011
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), 11-19. doi:10.1016/j.jbiotec.2011.03.016
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
Linke, B., Giegerich, R., & Goesmann, A. (2011). Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics, 27(7), 903-911. doi:10.1093/bioinformatics/btr040
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
Brankatschk, K., Blom, J., Goesmann, A., Smits, T. H. M., & Duffy, B. (2011). Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology, 193(8), 2066. doi:10.1128/JB.00123-11
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., et al. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), 1660-1672. doi:10.4238/vol9-3gmr901
PUB | DOI | WoS | PubMed | Europe PMC
 
[73]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
Trost, E., Ott, L., Schneider, J., Schröder, J., Jaenicke, S., Goesmann, A., Husemann, P., et al. (2010). The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics, 11(1), 728. doi:10.1186/1471-2164-11-728
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
Bertelli, C., Collyn, F., Croxatto, A., Rückert, C., Polkinghorne, A., Kebbi-Beghdadi, C., Goesmann, A., et al. (2010). The Waddlia Genome: A Window into Chlamydial Biology. PLOS ONE, 5(5), e10890. doi:10.1371/journal.pone.0010890
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
Smits, T. H. M., Rezzonico, F., Pelludat, C., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3. FEMS MICROBIOLOGY LETTERS, 308(1), 48-54. doi:10.1111/j.1574-6968.2010.01994.x
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., et al. (2010). Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics, 11(1), 91. doi:10.1186/1471-2164-11-91
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[69]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504
Yang, I., John, U., Beszteri, S., Glöckner, G., Krock, B., Goesmann, A., & Cembella, A. D. (2010). Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics, 11(1), 248. doi:10.1186/1471-2164-11-248
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[68]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS, 23(4), 384-393. doi:10.1094/MPMI-23-4-0384
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., et al. (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In J. M. Cock, K. Tessmar-Raible, C. Boyen, & F. Viard (Eds.), Introduction to Marine Genomics (Advances in Marine Genomics) (Vol. 1, pp. 315-396). Netherlands: Springer Netherlands. doi:10.1007/978-90-481-8639-6_9
PUB | DOI
 
[66]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics, 11(1), 2. doi:10.1186/1471-2164-11-2
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[65]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579
Farnbacher, M., Jahns, T., Willrodt, D., Daniel, R., Haas, R., Goesmann, A., Kurtz, S., et al. (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics, 11(1), 335. doi:10.1186/1471-2164-11-335
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
Steinweg, C., Kuenne, C. T., Billion, A., Mraheil, M. A., Domann, E., Ghai, R., Barbuddhe, S. B., et al. (2010). Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria. Journal of Bacteriology, 192(5), 1473-1474. doi:10.1128/JB.01415-09
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
Kuenne, C., Voget, S., Pischimarov, J., Oehm, S., Goesmann, A., Daniel, R., Hain, T., et al. (2010). Comparative Analysis of Plasmids in the Genus Listeria. PLOS ONE, 5(9), e12511. doi:10.1371/journal.pone.0012511
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319
Henckel, K., Küster, H., Stutz, L., & Goesmann, A. (2010). MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula. BMC Research Notes, 3(1), 262. doi:10.1186/1756-0500-3-262
PUB | PDF | DOI | PubMed | Europe PMC
 
[61]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
Smits, T. H. M., Rezzonico, F., Kamber, T., Goesmann, A., Ishimaru, C. A., Stockwell, V. O., Frey, J. E., et al. (2010). Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1. Journal of Bacteriology, 192(24), 6486-6487. doi:10.1128/JB.01122-10
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[60]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., et al. (2010). Visualization of omics data for systems biology. Nat Methods, 7(3s), S56-S68. doi:10.1038/NMETH.1436
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R. F., et al. (2010). Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY, 192(20), 5363-5377. doi:10.1128/JB.00883-10
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
Goesmann, A., Schneider, J., Trost, E., & Tauch, A. (2009). Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren. BIOspektrum, 15(3), 279-281.
PUB
 
[57]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022
Krawczyk, J., Goesmann, A., Nolte, R., Werber, M., & Weisshaar, B. (2009). Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code for Biology and Medicine, 4(1), 4. doi:10.1186/1751-0473-4-4
PUB | PDF | DOI | PubMed | Europe PMC
 
[56]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., et al. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology, 3(1), 82. doi:10.1186/1752-0509-3-82
PUB | PDF | DOI | PubMed | Europe PMC
 
[55]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., & Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1), 154. doi:10.1186/1471-2105-10-154
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[54]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300
Henckel, K., Runte, K. J., Bekel, T., Dondrup, M., Jakobi, T., Küster, H., & Goesmann, A. (2009). TRUNCATULIX - a data warehouse for the legume community. BMC Plant Biology, 9(1), 19. doi:10.1186/1471-2229-9-19
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY, 11(5), 1038-1055. doi:10.1111/j.1462-2920.2008.01825.x
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[52]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 45-50. doi:10.1016/j.jbiotec.2008.11.006
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[51]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., & Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics, 10(1), 56. doi:10.1186/1471-2105-10-56
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[50]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics, 10(1), 50. doi:10.1186/1471-2105-10-50
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[49]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., & Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics, 10(1), 430. doi:10.1186/1471-2105-10-430
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[48]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., et al. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. doi:10.1093/bioinformatics/btp568
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[47]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
Wegmann, U., Overweg, K., Horn, N., Goesmann, A., Narbad, A., Gasson, M. J., & Shearman, C. (2009). Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry. JOURNAL OF BACTERIOLOGY, 191(22), 7142-7143. doi:10.1128/JB.01182-09
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. doi:10.1016/j.jbiotec.2009.01.006
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
Dondrup, M., Hueser, A. T., Mertens, D., & Goesmann, A. (2009). An evaluation framework for statistical tests on microarray data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 18-26. doi:10.1016/j.jbiotec.2009.01.009
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., et al. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), 2726-2732. doi:10.1093/bioinformatics/btn452
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[43]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics, 9(1), 449. doi:10.1186/1471-2164-9-449
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[42]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
Vorhölter, F. - J., Schneiker-Bekel, S., Goesmann, A., Krause, L., Bekel, T., Kaiser, O., Linke, B., et al. (2008). The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology, 134(1-2), 33-45. doi:10.1016/j.jbiotec.2007.12.013
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[41]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(9), 3473-3478. doi:10.1073/pnas.0800151105
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[40]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 91-101. doi:10.1016/j.jbiotec.2008.06.003
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
Stiens, M., Becker, A., Bekel, T., Gödde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., et al. (2008). Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. Journal of Biotechnology, 136(1-2), 31-37. doi:10.1016/j.jbiotec.2008.04.014
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
Schlüter, A., Bekel, T., Diaz, N. N., Dondrup, M., Eichenlaub, R., Gartemann, K. - H., Krahn, I., et al. (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136(1-2), 77-90. doi:10.1016/j.jbiotec.2008.05.008
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
Tauch, A., Trost, E., Tilker, A., Ludewig, U., Schneiker-Bekel, S., Goesmann, A., Arnold, W., et al. (2008). The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. Journal of Biotechnology, 136(1-2), 11-21. doi:10.1016/j.jbiotec.2008.02.009
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., & Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH, 36(Web Server), W433-W437. doi:10.1093/nar/gkn284
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[35]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology, 136(1-2), 22-30. doi:10.1016/j.jbiotec.2008.03.004
PUB | DOI | WoS | PubMed | Europe PMC
 
[34]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., et al. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research, 36(7), 2230-2239. doi:10.1093/nar/gkn038
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., et al. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress
PUB
 
[32]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., et al. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity, 76(12), 5466-5477. doi:10.1128/IAI.00875-08
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY, 88(12), 3249-3259. doi:10.1099/vir.0.83156-0
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. doi:10.1186/1752-0509-1-55
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. doi:10.1038/nbt1354
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
Moran, M. A., Belas, R., Schell, M. A., Gonzalez, J. M., Sun, F., Sun, S., Binder, B. J., et al. (2007). Ecological genomics of marine roseobacters. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(14), 4559-4569. doi:10.1128/AEM.02580-06
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
Wegmann, U., O'Connell-Motherwy, M., Zomer, A., Buist, G., Shearman, C., Canchaya, C., Ventura, M., et al. (2007). Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363. JOURNAL OF BACTERIOLOGY, 189(8), 3256-3270. doi:10.1128/JB.01768-06
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
Bahl, M. I., Hansen, L. H., Goesmann, A., & Sorensen, S. J. (2007). The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. PLASMID, 58(1), 31-43. doi:10.1016/j.plasmid.2006.11.007
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
Küster, H., Becker, A., Firnhaber, C., Hohnjec, N., Manthey, K., Perlick, A. M., Bekel, T., et al. (2007). Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry, 68(1), 19-32. doi:10.1016/j.phytochem.2006.09.026
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology, 24(8), 997-1004. doi:10.1038/nbt1232
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354
Hohnjec, N., Henckel, K., Bekel, T., Gouzy, J., Dondrup, M., Goesmann, A., & Küster, H. (2006). Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula. FUNCTIONAL PLANT BIOLOGY, 33(8), 737-748. doi:10.1071/FP06079
PUB | PDF | DOI | WoS
 
[22]
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017
Schoen, C., Claus, H., Goesmann, A., Mueller, T., Brandt, P., Otto-Karg, I., Schramm-Glueck, A., et al. (2006). Genome comparison of non-pathogenic and pathogenic meningococci. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 296(Suppl. 42), 134.
PUB | WoS
 
[21]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
Tauch, A., Trost, E., Bekel, T., Goesmann, A., Ludewig, U., & Pühler, A. (2006). Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System. Biochemica, 4, 4-6.
PUB
 
[20]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
Krause, A., Ramakumar, A., Bartels, D., Battistoni, F., Bekel, T., Boch, J., Boehm, M., et al. (2006). Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72. Nature Biotechnology, 24(11), 1385-1391. doi:10.1038/nbt1243
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
Hain, T., Steinweg, C., Kuenne, C. T., Billion, A., Ghai, R., Chatterjee, S. S., Domann, E., et al. (2006). Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. Journal of Bacteriology, 188(23), 8299-8302. doi:10.1128/JB.00758-06
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics, 21(7), 853-859. doi:10.1093/bioinformatics/bti091
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[17]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. JOURNAL OF BACTERIOLOGY, 187(21), 7254-7266. doi:10.1128/JB.187.21.7254-7266.2005
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652
Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. - Y., Cohoon, M., Crécy-Lagard, V. de, et al. (2005). The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research, 33(17), 5691-5702. doi:10.1093/nar/gki866
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
Tauch, A., Kaiser, O., Hain, T., Goesmann, A., Weisshaar, B., Albersmeier, A., Bekel, T., et al. (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. Journal of Bacteriology, 187(13), 4671-4682. doi:10.1128/JB.187.13.4671-4682.2005
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[14]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644
Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., et al. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research, 33(Web Server), W710-W716. doi:10.1093/nar/gki400
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2004 | Bielefelder E-Dissertation | PUB-ID: 2301314
Goesmann, A. (2004). BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
[12]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
Westberg, J., Persson, A., Holmberg, A., Goesmann, A., Lundeberg, J., Johansson, K. E., Pettersson, B., et al. (2004). The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). GENOME RESEARCH, 14(2), 221-227. doi:10.1101/gr.1673304
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE, 303(5658), 689-692. doi:10.1126/science.1093027
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., & Schlüter, A. (2004). Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology, 150(11), 3613-3630. doi:10.1099/mic.0.27317-0
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[9]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
McHardy, A. C., Goesmann, A., Pühler, A., & Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS, 20(10), 1622-1631. doi:10.1093/bioinformatics/bth137
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
Goesmann, A., Linke, B., Rupp, O., Krause, L., Bartels, D., Dondrup, M., McHardy, A. C., et al. (2003). Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 157-167. doi:10.1016/j.jbiotec.2003.08.007
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
Kaiser, O., Bartels, D., Bekel, T., Goesmann, A., Kespohl, S., Pühler, A., & Meyer, F. (2003). Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 121-133. doi:10.1016/j.jbiotec.2003.08.008
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
Dondrup, M., Goesmann, A., Bartels, D., Kalinowski, J., Krause, L., Linke, B., Rupp, O., et al. (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 135-146. doi:10.1016/j.jbiotec.2003.08.010
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
Wilke, A., Rückert, C., Bartels, D., Dondrup, M., Goesmann, A., Hüser, A. T., Kespohl, S., et al. (2003). Bioinformatics support for high-throughput proteomics. JOURNAL OF BIOTECHNOLOGY, 106(2-3), 147-156. doi:10.1016/j.jbiotec.2003.08.009
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
Tauch, A., Schlüter, A., Bischoff, N., Goesmann, A., Meyer, F., & Pühler, A. (2003). The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Molecular Genetics and Genomics, 268(5), 570-584. doi:10.1007/s00438-002-0785-z
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[3]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
Meyer, F., Goesmann, A., McHardy, A. C., Bartels, D., Bekel, T., Clausen, J., Kalinowski, J., et al. (2003). GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Research, 31(8), 2187-2195. doi:10.1093/nar/gkg312
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[2]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., et al. (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. Journal of Biotechnology, 104(1-3), 5-25. doi:10.1016/S0168-1656(03)00154-8
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[1]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
Goesmann, A., Haubrock, M., Meyer, F., Kalinowski, J., & Giegerich, R. (2002). PathFinder: reconstruction and dynamic visualization of metabolic pathways. BIOINFORMATICS, 18(1), 124-129. doi:10.1093/bioinformatics/18.1.124
PUB | DOI | WoS | PubMed | Europe PMC
 

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