EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
BMC Bioinformatics 10(1): 154.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Technische Fakultät > AG Genominformatik
Abstract / Bemerkung
Background:The introduction of next generation sequencing approaches has caused a rapid increase in the number of completely sequenced genomes. As one result of this development, it is now feasible to analyze large groups of related genomes in a comparative approach. A main task in comparative genomics is the identification of orthologous genes in different genomes and the classification of genes as core genes or singletons. Results: To support these studies EDGAR – ''Efficient Database framework for comparative Genome Analyses using BLAST score Ratios'' – was developed. EDGAR is designed to automatically perform genome comparisons in a high throughput approach. Comparative analyses for 582 genomes across 75 genus groups taken from the NCBI genomes database were conducted with the software and the results were integrated into an underlying database. To demonstrate a specific application case, we analyzed ten genomes of the bacterial genus Xanthomonas, for which phylogenetic studies were awkward due to divergent taxonomic systems. The resultant phylogeny EDGAR provided was consistent with outcomes from traditional approaches performed recently and moreover, it was possible to root each strain with unprecedented accuracy. Conclusion: EDGAR provides novel analysis features and significantly simplifies the comparative analysis of related genomes. The software supports a quick survey of evolutionary relationships and simplifies the process of obtaining new biological insights into the differential gene content of kindred genomes. Visualization features, like synteny plots or Venn diagrams, are offered to the scientific community through a web-based and therefore platform independent user interface http://edgar.cebitec.uni-bielefeld.de webcite, where the precomputed data sets can be browsed.
Erscheinungsjahr
2009
Zeitschriftentitel
BMC Bioinformatics
Band
10
Ausgabe
1
Art.-Nr.
154
ISSN
1471-2105
Page URI
https://pub.uni-bielefeld.de/record/1783187
Zitieren
Blom J, Albaum S, Doppmeier D, et al. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 2009;10(1): 154.
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., & Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1), 154. https://doi.org/10.1186/1471-2105-10-154
Blom, Jochen, Albaum, Stefan, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, and Goesmann, Alexander. 2009. “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”. BMC Bioinformatics 10 (1): 154.
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.
Blom, J., et al., 2009. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics, 10(1): 154.
J. Blom, et al., “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, vol. 10, 2009, : 154.
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F.-J., Zakrzewski, M., Goesmann, A.: EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 10, : 154 (2009).
Blom, Jochen, Albaum, Stefan, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, and Goesmann, Alexander. “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”. BMC Bioinformatics 10.1 (2009): 154.
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Daten bereitgestellt von European Bioinformatics Institute (EBI)
178 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ., Microbiology 163(8), 2017
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Normand P, Nguyen TV, Battenberg K, Berry AM, Heuvel BV, Fernandez MP, Pawlowski K., Int J Syst Evol Microbiol 67(10), 2017
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De Maayer P, Aliyu H, Vikram S, Blom J, Duffy B, Cowan DA, Smits THM, Venter SN, Coutinho TA., Front Microbiol 8(), 2017
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Lopes R, Cerdeira L, Tavares GS, Ruiz JC, Blom J, Horácio ECA, Mantovani HC, Queiroz MV., World J Microbiol Biotechnol 33(10), 2017
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Lopes R, Cerdeira L, Tavares GS, Ruiz JC, Blom J, Horácio ECA, Mantovani HC, Queiroz MV., World J Microbiol Biotechnol 33(10), 2017
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Sant'Anna FH, Ambrosini A, de Souza R, de Carvalho Fernandes G, Bach E, Balsanelli E, Baura V, Brito LF, Wendisch VF, de Oliveira Pedrosa F, de Souza EM, Passaglia LMP., Front Microbiol 8(), 2017
PMID: 29046663
Sant'Anna FH, Ambrosini A, de Souza R, de Carvalho Fernandes G, Bach E, Balsanelli E, Baura V, Brito LF, Wendisch VF, de Oliveira Pedrosa F, de Souza EM, Passaglia LMP., Front Microbiol 8(), 2017
PMID: 29046663
Comparative genomics of Lactobacillus kefiranofaciens ZW3 and related members of Lactobacillus. spp reveal adaptations to dairy and gut environments.
Xing Z, Geng W, Li C, Sun Y, Wang Y., Sci Rep 7(1), 2017
PMID: 28993659
Xing Z, Geng W, Li C, Sun Y, Wang Y., Sci Rep 7(1), 2017
PMID: 28993659
An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae.
Jamal SB, Hassan SS, Tiwari S, Viana MV, Benevides LJ, Ullah A, Turjanski AG, Barh D, Ghosh P, Costa DA, Silva A, Röttger R, Baumbach J, Azevedo VAC., PLoS One 12(10), 2017
PMID: 29049350
Jamal SB, Hassan SS, Tiwari S, Viana MV, Benevides LJ, Ullah A, Turjanski AG, Barh D, Ghosh P, Costa DA, Silva A, Röttger R, Baumbach J, Azevedo VAC., PLoS One 12(10), 2017
PMID: 29049350
Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica.
Glaeser SP, Imani J, Alabid I, Guo H, Kumar N, Kämpfer P, Hardt M, Blom J, Goesmann A, Rothballer M, Hartmann A, Kogel KH., ISME J 10(4), 2016
PMID: 26495996
Glaeser SP, Imani J, Alabid I, Guo H, Kumar N, Kämpfer P, Hardt M, Blom J, Goesmann A, Rothballer M, Hartmann A, Kogel KH., ISME J 10(4), 2016
PMID: 26495996
Enterobacter bugandensis sp. nov., isolated from neonatal blood.
Doijad S, Imirzalioglu C, Yao Y, Pati NB, Falgenhauer L, Hain T, Foesel BU, Abt B, Overmann J, Mirambo MM, Mshana SE, Chakraborty T., Int J Syst Evol Microbiol 66(2), 2016
PMID: 26637818
Doijad S, Imirzalioglu C, Yao Y, Pati NB, Falgenhauer L, Hain T, Foesel BU, Abt B, Overmann J, Mirambo MM, Mshana SE, Chakraborty T., Int J Syst Evol Microbiol 66(2), 2016
PMID: 26637818
Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs.
Jimenez-Infante F, Ngugi DK, Vinu M, Alam I, Kamau AA, Blom J, Bajic VB, Stingl U., Appl Environ Microbiol 82(4), 2016
PMID: 26655752
Jimenez-Infante F, Ngugi DK, Vinu M, Alam I, Kamau AA, Blom J, Bajic VB, Stingl U., Appl Environ Microbiol 82(4), 2016
PMID: 26655752
Overcoming Enterotoxigenic Escherichia coli Pathogen Diversity: Translational Molecular Approaches to Inform Vaccine Design.
Fleckenstein JM, Rasko DA., Methods Mol Biol 1403(), 2016
PMID: 27076141
Fleckenstein JM, Rasko DA., Methods Mol Biol 1403(), 2016
PMID: 27076141
Elucidation of the zinc-dependent regulation in Amycolatopsis japonicum enabled the identification of the ethylenediamine-disuccinate ([S,S]-EDDS) genes.
Spohn M, Wohlleben W, Stegmann E., Environ Microbiol 18(4), 2016
PMID: 26636770
Spohn M, Wohlleben W, Stegmann E., Environ Microbiol 18(4), 2016
PMID: 26636770
Phenotypic, molecular characterization, antimicrobial susceptibility and draft genome sequence of Corynebacterium argentoratense strains isolated from clinical samples.
Fernández-Natal I, Sáez-Nieto JA, Rodríguez-Lázaro D, Valdezate-Ramos S, Parras-Padilla T, Medina MJ, Rodríguez-Pollán RH, Blom J, Tauch A, Soriano F., New Microbes New Infect 10(), 2016
PMID: 26933505
Fernández-Natal I, Sáez-Nieto JA, Rodríguez-Lázaro D, Valdezate-Ramos S, Parras-Padilla T, Medina MJ, Rodríguez-Pollán RH, Blom J, Tauch A, Soriano F., New Microbes New Infect 10(), 2016
PMID: 26933505
Erwinia gerundensis sp. nov., a cosmopolitan epiphyte originally isolated from pome fruit trees.
Rezzonico F, Smits THM, Born Y, Blom J, Frey JE, Goesmann A, Cleenwerck I, de Vos P, Bonaterra A, Duffy B, Montesinos E., Int J Syst Evol Microbiol 66(3), 2016
PMID: 26813696
Rezzonico F, Smits THM, Born Y, Blom J, Frey JE, Goesmann A, Cleenwerck I, de Vos P, Bonaterra A, Duffy B, Montesinos E., Int J Syst Evol Microbiol 66(3), 2016
PMID: 26813696
Accurate identification of members of the Burkholderia cepacia complex in cystic fibrosis sputum.
Martinucci M, Roscetto E, Iula VD, Votsi A, Catania MR, De Gregorio E., Lett Appl Microbiol 62(3), 2016
PMID: 26671758
Martinucci M, Roscetto E, Iula VD, Votsi A, Catania MR, De Gregorio E., Lett Appl Microbiol 62(3), 2016
PMID: 26671758
Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle.
Dickey AM, Loy JD, Bono JL, Smith TP, Apley MD, Lubbers BV, DeDonder KD, Capik SF, Larson RL, White BJ, Blom J, Chitko-McKown CG, Clawson ML., Vet Res 47(), 2016
PMID: 26872821
Dickey AM, Loy JD, Bono JL, Smith TP, Apley MD, Lubbers BV, DeDonder KD, Capik SF, Larson RL, White BJ, Blom J, Chitko-McKown CG, Clawson ML., Vet Res 47(), 2016
PMID: 26872821
Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics.
Flury P, Aellen N, Ruffner B, Péchy-Tarr M, Fataar S, Metla Z, Dominguez-Ferreras A, Bloemberg G, Frey J, Goesmann A, Raaijmakers JM, Duffy B, Höfte M, Blom J, Smits TH, Keel C, Maurhofer M., ISME J 10(10), 2016
PMID: 26894448
Flury P, Aellen N, Ruffner B, Péchy-Tarr M, Fataar S, Metla Z, Dominguez-Ferreras A, Bloemberg G, Frey J, Goesmann A, Raaijmakers JM, Duffy B, Höfte M, Blom J, Smits TH, Keel C, Maurhofer M., ISME J 10(10), 2016
PMID: 26894448
Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).
Papadimitriou K, Baharidis PK, Georgoulis A, Engel M, Louka M, Karamolegkou G, Tsoka A, Blom J, Pot B, Malecki P, Rypniewski W, Huber H, Schloter M, Vorgias C., Extremophiles 20(3), 2016
PMID: 27016195
Papadimitriou K, Baharidis PK, Georgoulis A, Engel M, Louka M, Karamolegkou G, Tsoka A, Blom J, Pot B, Malecki P, Rypniewski W, Huber H, Schloter M, Vorgias C., Extremophiles 20(3), 2016
PMID: 27016195
The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr.
Behr J, Geissler AJ, Schmid J, Zehe A, Vogel RF., PLoS One 11(3), 2016
PMID: 27028007
Behr J, Geissler AJ, Schmid J, Zehe A, Vogel RF., PLoS One 11(3), 2016
PMID: 27028007
Comparative Genome Analysis Provides Insights into the Pathogenicity of Flavobacterium psychrophilum.
Castillo D, Christiansen RH, Dalsgaard I, Madsen L, Espejo R, Middelboe M., PLoS One 11(4), 2016
PMID: 27071075
Castillo D, Christiansen RH, Dalsgaard I, Madsen L, Espejo R, Middelboe M., PLoS One 11(4), 2016
PMID: 27071075
Pan-genome analysis of Aeromonas hydrophila, Aeromonas veronii and Aeromonas caviae indicates phylogenomic diversity and greater pathogenic potential for Aeromonas hydrophila.
Ghatak S, Blom J, Das S, Sanjukta R, Puro K, Mawlong M, Shakuntala I, Sen A, Goesmann A, Kumar A, Ngachan SV., Antonie Van Leeuwenhoek 109(7), 2016
PMID: 27075453
Ghatak S, Blom J, Das S, Sanjukta R, Puro K, Mawlong M, Shakuntala I, Sen A, Goesmann A, Kumar A, Ngachan SV., Antonie Van Leeuwenhoek 109(7), 2016
PMID: 27075453
EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J, Kreis J, Spänig S, Juhre T, Bertelli C, Ernst C, Goesmann A., Nucleic Acids Res 44(w1), 2016
PMID: 27098043
Blom J, Kreis J, Spänig S, Juhre T, Bertelli C, Ernst C, Goesmann A., Nucleic Acids Res 44(w1), 2016
PMID: 27098043
Intraspecies Transfer of the Chromosomal Acinetobacter baumannii blaNDM-1 Carbapenemase Gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A., Antimicrob Agents Chemother 60(5), 2016
PMID: 26953198
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A., Antimicrob Agents Chemother 60(5), 2016
PMID: 26953198
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens.
Krzyżanowska DM, Ossowicki A, Rajewska M, Maciąg T, Jabłońska M, Jabłońska M, Obuchowski M, Heeb S, Jafra S., Front Microbiol 7(), 2016
PMID: 27303376
Krzyżanowska DM, Ossowicki A, Rajewska M, Maciąg T, Jabłońska M, Jabłońska M, Obuchowski M, Heeb S, Jafra S., Front Microbiol 7(), 2016
PMID: 27303376
High hydrostatic pressure adaptive strategies in an obligate piezophile Pyrococcus yayanosii.
Michoud G, Jebbar M., Sci Rep 6(), 2016
PMID: 27250364
Michoud G, Jebbar M., Sci Rep 6(), 2016
PMID: 27250364
Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation.
Pathak A, Chauhan A, Blom J, Indest KJ, Jung CM, Stothard P, Bera G, Green SJ, Ogram A., PLoS One 11(8), 2016
PMID: 27532207
Pathak A, Chauhan A, Blom J, Indest KJ, Jung CM, Stothard P, Bera G, Green SJ, Ogram A., PLoS One 11(8), 2016
PMID: 27532207
New Genomic Insights into "Entotheonella" Symbionts in Theonella swinhoei: Mixotrophy, Anaerobic Adaptation, Resilience, and Interaction.
Liu F, Li J, Feng G, Li Z., Front Microbiol 7(), 2016
PMID: 27610106
Liu F, Li J, Feng G, Li Z., Front Microbiol 7(), 2016
PMID: 27610106
High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants.
Robène I, Bolot S, Pruvost O, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R, Gagnevin L., Genome Announc 4(5), 2016
PMID: 27587819
Robène I, Bolot S, Pruvost O, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R, Gagnevin L., Genome Announc 4(5), 2016
PMID: 27587819
Deciphering the virulence factors of the opportunistic pathogen Mycobacterium colombiense.
Gonzalez-Perez MN, Murcia MI, Parra-Lopez C, Blom J, Tauch A., New Microbes New Infect 14(), 2016
PMID: 27818776
Gonzalez-Perez MN, Murcia MI, Parra-Lopez C, Blom J, Tauch A., New Microbes New Infect 14(), 2016
PMID: 27818776
Draft Genome Sequences of Four Novel Thermal- and Alkaline-Tolerant Egyptian Rhizobium Strains Nodulating Berseem Clover.
Shamseldin A, Nelson MS, Staley C, Guhlin J, Sadowsky MJ., Genome Announc 4(5), 2016
PMID: 27635006
Shamseldin A, Nelson MS, Staley C, Guhlin J, Sadowsky MJ., Genome Announc 4(5), 2016
PMID: 27635006
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K., BMC Genomics 17(1), 2016
PMID: 27729005
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K., BMC Genomics 17(1), 2016
PMID: 27729005
Specific surface glycan decorations enable antimicrobial peptide resistance in plant-beneficial pseudomonads with insect-pathogenic properties.
Kupferschmied P, Chai T, Flury P, Blom J, Smits TH, Maurhofer M, Keel C., Environ Microbiol 18(11), 2016
PMID: 27727519
Kupferschmied P, Chai T, Flury P, Blom J, Smits TH, Maurhofer M, Keel C., Environ Microbiol 18(11), 2016
PMID: 27727519
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974T (ATCC 19319T).
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum SP, Kölliker R, Goesmann A, Pühler A, Overmann J, Vorhölter FJ., Genome Announc 4(6), 2016
PMID: 27908994
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum SP, Kölliker R, Goesmann A, Pühler A, Overmann J, Vorhölter FJ., Genome Announc 4(6), 2016
PMID: 27908994
Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa.
Sangal V, Goodfellow M, Jones AL, Schwalbe EC, Blom J, Hoskisson PA, Sutcliffe IC., Sci Rep 6(), 2016
PMID: 27924912
Sangal V, Goodfellow M, Jones AL, Schwalbe EC, Blom J, Hoskisson PA, Sutcliffe IC., Sci Rep 6(), 2016
PMID: 27924912
The Change of a Medically Important Genus: Worldwide Occurrence of Genetically Diverse Novel Brucella Species in Exotic Frogs.
Scholz HC, Mühldorfer K, Shilton C, Benedict S, Whatmore AM, Blom J, Eisenberg T., PLoS One 11(12), 2016
PMID: 28036367
Scholz HC, Mühldorfer K, Shilton C, Benedict S, Whatmore AM, Blom J, Eisenberg T., PLoS One 11(12), 2016
PMID: 28036367
Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.
Kamanda Ngugi D, Blom J, Alam I, Rashid M, Ba-Alawi W, Zhang G, Hikmawan T, Guan Y, Antunes A, Siam R, El Dorry H, Bajic V, Stingl U., ISME J 9(2), 2015
PMID: 25105904
Kamanda Ngugi D, Blom J, Alam I, Rashid M, Ba-Alawi W, Zhang G, Hikmawan T, Guan Y, Antunes A, Siam R, El Dorry H, Bajic V, Stingl U., ISME J 9(2), 2015
PMID: 25105904
Interclonal gradient of virulence in the Pseudomonas aeruginosa pangenome from disease and environment.
Hilker R, Munder A, Klockgether J, Losada PM, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Fischer S, Peng H, Schönfelder T, Türk O, Wiehlmann L, Wölbeling F, Gulbins E, Goesmann A, Tümmler B., Environ Microbiol 17(1), 2015
PMID: 25156090
Hilker R, Munder A, Klockgether J, Losada PM, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Fischer S, Peng H, Schönfelder T, Türk O, Wiehlmann L, Wölbeling F, Gulbins E, Goesmann A, Tümmler B., Environ Microbiol 17(1), 2015
PMID: 25156090
Chassis organism from Corynebacterium glutamicum--a top-down approach to identify and delete irrelevant gene clusters.
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S., Biotechnol J 10(2), 2015
PMID: 25139579
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S., Biotechnol J 10(2), 2015
PMID: 25139579
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants.
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A., J Biotechnol 201(), 2015
PMID: 25455016
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A., J Biotechnol 201(), 2015
PMID: 25455016
Genomic avenue to avian colisepticemia.
Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U., MBio 6(1), 2015
PMID: 25587010
Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U., MBio 6(1), 2015
PMID: 25587010
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147(T).
Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C., Stand Genomic Sci 10(), 2015
PMID: 26203323
Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C., Stand Genomic Sci 10(), 2015
PMID: 26203323
Comparative functional pan-genome analyses to build connections between genomic dynamics and phenotypic evolution in polycyclic aromatic hydrocarbon metabolism in the genus Mycobacterium.
Kweon O, Kim SJ, Blom J, Kim SK, Kim BS, Baek DH, Park SI, Sutherland JB, Cerniglia CE., BMC Evol Biol 15(), 2015
PMID: 25880171
Kweon O, Kim SJ, Blom J, Kim SK, Kim BS, Baek DH, Park SI, Sutherland JB, Cerniglia CE., BMC Evol Biol 15(), 2015
PMID: 25880171
Genome Sequence of the Urethral Catheter Isolate Pseudomonas aeruginosa MH19.
Vorhölter FJ, Tielen P, Wibberg D, Narten M, Schobert M, Tüpker R, Blom J, Schatschneider S, Winkler A, Albersmeier A, Goesmann A, Pühler A, Jahn D., Genome Announc 3(2), 2015
PMID: 25767242
Vorhölter FJ, Tielen P, Wibberg D, Narten M, Schobert M, Tüpker R, Blom J, Schatschneider S, Winkler A, Albersmeier A, Goesmann A, Pühler A, Jahn D., Genome Announc 3(2), 2015
PMID: 25767242
Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex.
Morley L, McNally A, Paszkiewicz K, Corander J, Méric G, Sheppard SK, Blom J, Manning G., Appl Environ Microbiol 81(11), 2015
PMID: 25795671
Morley L, McNally A, Paszkiewicz K, Corander J, Méric G, Sheppard SK, Blom J, Manning G., Appl Environ Microbiol 81(11), 2015
PMID: 25795671
Genomic, proteomic and morphological characterization of two novel broad host lytic bacteriophages ΦPD10.3 and ΦPD23.1 infecting pectinolytic Pectobacterium spp. and Dickeya spp.
Czajkowski R, Ozymko Z, de Jager V, Siwinska J, Smolarska A, Ossowicki A, Narajczyk M, Lojkowska E., PLoS One 10(3), 2015
PMID: 25803051
Czajkowski R, Ozymko Z, de Jager V, Siwinska J, Smolarska A, Ossowicki A, Narajczyk M, Lojkowska E., PLoS One 10(3), 2015
PMID: 25803051
Applying meta-pathway analyses through metagenomics to identify the functional properties of the major bacterial communities of a single spontaneous cocoa bean fermentation process sample.
Illeghems K, Weckx S, De Vuyst L., Food Microbiol 50(), 2015
PMID: 25998815
Illeghems K, Weckx S, De Vuyst L., Food Microbiol 50(), 2015
PMID: 25998815
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species.
Wang Y, Coleman-Derr D, Chen G, Gu YQ., Nucleic Acids Res 43(w1), 2015
PMID: 25964301
Wang Y, Coleman-Derr D, Chen G, Gu YQ., Nucleic Acids Res 43(w1), 2015
PMID: 25964301
Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology.
Guimarães L, Soares S, Trost E, Blom J, Ramos R, Silva A, Barh D, Azevedo V., BMC Genomics 16 Suppl 5(), 2015
PMID: 26041051
Guimarães L, Soares S, Trost E, Blom J, Ramos R, Silva A, Barh D, Azevedo V., BMC Genomics 16 Suppl 5(), 2015
PMID: 26041051
Lifestyle evolution in cyanobacterial symbionts of sponges.
Burgsdorf I, Slaby BM, Handley KM, Haber M, Blom J, Marshall CW, Gilbert JA, Hentschel U, Steindler L., MBio 6(3), 2015
PMID: 26037118
Burgsdorf I, Slaby BM, Handley KM, Haber M, Blom J, Marshall CW, Gilbert JA, Hentschel U, Steindler L., MBio 6(3), 2015
PMID: 26037118
Phylogenomic grouping of Listeria monocytogenes.
Doijad S, Weigel M, Barbuddhe S, Blom J, Goesmann A, Hain T, Chakraborty T., Can J Microbiol 61(9), 2015
PMID: 26245135
Doijad S, Weigel M, Barbuddhe S, Blom J, Goesmann A, Hain T, Chakraborty T., Can J Microbiol 61(9), 2015
PMID: 26245135
Complete Genome Sequence of the Cyanogenic Phosphate-Solubilizing Pseudomonas sp. Strain CCOS 191, a Close Relative of Pseudomonas mosselii.
Smits TH, Pothier JF, Ruinelli M, Blom J, Frasson D, Koechli C, Fabbri C, Brandl H, Duffy B, Sievers M., Genome Announc 3(3), 2015
PMID: 26067963
Smits TH, Pothier JF, Ruinelli M, Blom J, Frasson D, Koechli C, Fabbri C, Brandl H, Duffy B, Sievers M., Genome Announc 3(3), 2015
PMID: 26067963
The Sinorhizobium fredii HH103 Genome: A Comparative Analysis With S. fredii Strains Differing in Their Symbiotic Behavior With Soybean.
Vinardell JM, Acosta-Jurado S, Zehner S, Göttfert M, Becker A, Baena I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, McIntosh M, Margaret I, Pérez-Montaño F, Schneiker-Bekel S, Serranía J, Szczepanowski R, Buendía AM, Lloret J, Bonilla I, Pühler A, Ruiz-Sainz JE, Weidner S., Mol Plant Microbe Interact 28(7), 2015
PMID: 25675256
Vinardell JM, Acosta-Jurado S, Zehner S, Göttfert M, Becker A, Baena I, Blom J, Crespo-Rivas JC, Goesmann A, Jaenicke S, Krol E, McIntosh M, Margaret I, Pérez-Montaño F, Schneiker-Bekel S, Serranía J, Szczepanowski R, Buendía AM, Lloret J, Bonilla I, Pühler A, Ruiz-Sainz JE, Weidner S., Mol Plant Microbe Interact 28(7), 2015
PMID: 25675256
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter FJ., Genome Announc 3(4), 2015
PMID: 26139712
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter FJ., Genome Announc 3(4), 2015
PMID: 26139712
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms.
Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger KE, Ernst JF., J Biotechnol 211(), 2015
PMID: 26150016
Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger KE, Ernst JF., J Biotechnol 211(), 2015
PMID: 26150016
Diversity and Global Distribution of IncL/M Plasmids Enabling Horizontal Dissemination of β-Lactam Resistance Genes among the Enterobacteriaceae.
Adamczuk M, Zaleski P, Dziewit L, Wolinowska R, Nieckarz M, Wawrzyniak P, Kieryl P, Plucienniczak A, Bartosik D., Biomed Res Int 2015(), 2015
PMID: 26236726
Adamczuk M, Zaleski P, Dziewit L, Wolinowska R, Nieckarz M, Wawrzyniak P, Kieryl P, Plucienniczak A, Bartosik D., Biomed Res Int 2015(), 2015
PMID: 26236726
Genome Sequence of the Urethral Isolate Pseudomonas aeruginosa RN21.
Wibberg D, Tielen P, Narten M, Schobert M, Blom J, Schatschneider S, Meyer AK, Neubauer R, Albersmeier A, Albaum S, Jahn M, Goesmann A, Vorhölter FJ, Pühler A, Jahn D., Genome Announc 3(4), 2015
PMID: 26184943
Wibberg D, Tielen P, Narten M, Schobert M, Blom J, Schatschneider S, Meyer AK, Neubauer R, Albersmeier A, Albaum S, Jahn M, Goesmann A, Vorhölter FJ, Pühler A, Jahn D., Genome Announc 3(4), 2015
PMID: 26184943
Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.
Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E., Syst Appl Microbiol 38(7), 2015
PMID: 26259823
Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E., Syst Appl Microbiol 38(7), 2015
PMID: 26259823
Inside the Pan-genome - Methods and Software Overview.
Guimarães LC, Florczak-Wyspianska J, de Jesus LB, Viana MV, Silva A, Ramos RT, Soares Sde C, Soares Sde C., Curr Genomics 16(4), 2015
PMID: 27006628
Guimarães LC, Florczak-Wyspianska J, de Jesus LB, Viana MV, Silva A, Ramos RT, Soares Sde C, Soares Sde C., Curr Genomics 16(4), 2015
PMID: 27006628
Pan-Tetris: an interactive visualisation for Pan-genomes.
Hennig A, Bernhardt J, Nieselt K., BMC Bioinformatics 16 Suppl 11(), 2015
PMID: 26328606
Hennig A, Bernhardt J, Nieselt K., BMC Bioinformatics 16 Suppl 11(), 2015
PMID: 26328606
Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation.
Fang L, Sun D, Xu Z, He J, Qi S, Chen X, Chew W, Liu J., Biotechnol Biofuels 8(), 2015
PMID: 26322124
Fang L, Sun D, Xu Z, He J, Qi S, Chen X, Chew W, Liu J., Biotechnol Biofuels 8(), 2015
PMID: 26322124
The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.
Czajkowski R, Ozymko Z, Siwinska J, Ossowicki A, de Jager V, Narajczyk M, Łojkowska E., Stand Genomic Sci 10(), 2015
PMID: 26405503
Czajkowski R, Ozymko Z, Siwinska J, Ossowicki A, de Jager V, Narajczyk M, Łojkowska E., Stand Genomic Sci 10(), 2015
PMID: 26405503
Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome.
Sangal V, Blom J, Sutcliffe IC, von Hunolstein C, Burkovski A, Hoskisson PA., BMC Genomics 16(), 2015
PMID: 26452736
Sangal V, Blom J, Sutcliffe IC, von Hunolstein C, Burkovski A, Hoskisson PA., BMC Genomics 16(), 2015
PMID: 26452736
Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes.
Illeghems K, De Vuyst L, Weckx S., BMC Genomics 16(), 2015
PMID: 26459565
Illeghems K, De Vuyst L, Weckx S., BMC Genomics 16(), 2015
PMID: 26459565
Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics.
Mushtaq M, Zubair S, Råsbäck T, Bongcam-Rudloff E, Jansson DS., BMC Microbiol 15(), 2015
PMID: 26458507
Mushtaq M, Zubair S, Råsbäck T, Bongcam-Rudloff E, Jansson DS., BMC Microbiol 15(), 2015
PMID: 26458507
Parallel computing in genomic research: advances and applications.
Ocaña K, de Oliveira D., Adv Appl Bioinform Chem 8(), 2015
PMID: 26604801
Ocaña K, de Oliveira D., Adv Appl Bioinform Chem 8(), 2015
PMID: 26604801
Draft Genome Sequence of the Commercial Biocontrol Strain Pantoea agglomerans P10c.
Smits TH, Rezzonico F, Blom J, Goesmann A, Abelli A, Kron Morelli R, Vanneste JL, Duffy B., Genome Announc 3(6), 2015
PMID: 26659685
Smits TH, Rezzonico F, Blom J, Goesmann A, Abelli A, Kron Morelli R, Vanneste JL, Duffy B., Genome Announc 3(6), 2015
PMID: 26659685
Novel Routes for Improving Biocontrol Activity of Bacillus Based Bioinoculants.
Wu L, Wu HJ, Qiao J, Gao X, Borriss R., Front Microbiol 6(), 2015
PMID: 26696998
Wu L, Wu HJ, Qiao J, Gao X, Borriss R., Front Microbiol 6(), 2015
PMID: 26696998
The Geobacillus paradox: why is a thermophilic bacterial genus so prevalent on a mesophilic planet?
Zeigler DR., Microbiology 160(pt 1), 2014
PMID: 24085838
Zeigler DR., Microbiology 160(pt 1), 2014
PMID: 24085838
A molecular scheme for Yersinia enterocolitica patho-serotyping derived from genome-wide analysis.
Garzetti D, Susen R, Fruth A, Tietze E, Heesemann J, Rakin A., Int J Med Microbiol 304(3-4), 2014
PMID: 24246413
Garzetti D, Susen R, Fruth A, Tietze E, Heesemann J, Rakin A., Int J Med Microbiol 304(3-4), 2014
PMID: 24246413
A lack of genetic basis for biovar differentiation in clinically important Corynebacterium diphtheriae from whole genome sequencing.
Sangal V, Burkovski A, Hunt AC, Edwards B, Blom J, Hoskisson PA., Infect Genet Evol 21(), 2014
PMID: 24200588
Sangal V, Burkovski A, Hunt AC, Edwards B, Blom J, Hoskisson PA., Infect Genet Evol 21(), 2014
PMID: 24200588
Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions.
Smits TH, Guerrero-Prieto VM, Hernández-Escarcega G, Blom J, Goesmann A, Rezzonico F, Duffy B, Stockwell VO., Genome Announc 2(1), 2014
PMID: 24459281
Smits TH, Guerrero-Prieto VM, Hernández-Escarcega G, Blom J, Goesmann A, Rezzonico F, Duffy B, Stockwell VO., Genome Announc 2(1), 2014
PMID: 24459281
Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Xanthomonas campestris pv. campestris.
Frese M, Schatschneider S, Voss J, Vorhölter FJ, Niehaus K., Arch Biochem Biophys 546(), 2014
PMID: 24508689
Frese M, Schatschneider S, Voss J, Vorhölter FJ, Niehaus K., Arch Biochem Biophys 546(), 2014
PMID: 24508689
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids.
Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D., BMC Genomics 15(), 2014
PMID: 24517536
Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D., BMC Genomics 15(), 2014
PMID: 24517536
Genome sequence of the acid-tolerant strain Rhizobium sp. LPU83.
Wibberg D, Tejerizo GT, Del Papa MF, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M., J Biotechnol 176(), 2014
PMID: 24556327
Wibberg D, Tejerizo GT, Del Papa MF, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M., J Biotechnol 176(), 2014
PMID: 24556327
Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38.
Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter FJ, Pühler A, Jahn D., Genome Announc 2(2), 2014
PMID: 24625869
Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter FJ, Pühler A, Jahn D., Genome Announc 2(2), 2014
PMID: 24625869
Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex.
Papadimitriou K, Anastasiou R, Mavrogonatou E, Blom J, Papandreou NC, Hamodrakas SJ, Ferreira S, Renault P, Supply P, Pot B, Tsakalidou E., BMC Genomics 15(), 2014
PMID: 24713045
Papadimitriou K, Anastasiou R, Mavrogonatou E, Blom J, Papandreou NC, Hamodrakas SJ, Ferreira S, Renault P, Supply P, Pot B, Tsakalidou E., BMC Genomics 15(), 2014
PMID: 24713045
ReadXplorer--visualization and analysis of mapped sequences.
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A., Bioinformatics 30(16), 2014
PMID: 24790157
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A., Bioinformatics 30(16), 2014
PMID: 24790157
Development and application of a multilocus sequence typing scheme for Streptococcus gallolyticus subsp. gallolyticus.
Dumke J, Hinse D, Vollmer T, Knabbe C, Dreier J., J Clin Microbiol 52(7), 2014
PMID: 24789199
Dumke J, Hinse D, Vollmer T, Knabbe C, Dreier J., J Clin Microbiol 52(7), 2014
PMID: 24789199
Draft genome of formaldehyde-degrading strain, Pseudomonas monteilii IOFA19.
Liu Y, Chen X, Blom J, Yi Z, Wen J, Zeng R., Mar Genomics 15(), 2014
PMID: 24798874
Liu Y, Chen X, Blom J, Yi Z, Wen J, Zeng R., Mar Genomics 15(), 2014
PMID: 24798874
Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle.
Załuga J, Stragier P, Baeyen S, Haegeman A, Van Vaerenbergh J, Maes M, De Vos P., BMC Genomics 15(), 2014
PMID: 24885539
Załuga J, Stragier P, Baeyen S, Haegeman A, Van Vaerenbergh J, Maes M, De Vos P., BMC Genomics 15(), 2014
PMID: 24885539
Identification of a unique radical S-adenosylmethionine methylase likely involved in methanopterin biosynthesis in Methanocaldococcus jannaschii.
Allen KD, Xu H, White RH., J Bacteriol 196(18), 2014
PMID: 25002541
Allen KD, Xu H, White RH., J Bacteriol 196(18), 2014
PMID: 25002541
A comparative pan-genome perspective of niche-adaptable cell-surface protein phenotypes in Lactobacillus rhamnosus.
Kant R, Rintahaka J, Yu X, Sigvart-Mattila P, Paulin L, Mecklin JP, Saarela M, Palva A, von Ossowski I., PLoS One 9(7), 2014
PMID: 25032833
Kant R, Rintahaka J, Yu X, Sigvart-Mattila P, Paulin L, Mecklin JP, Saarela M, Palva A, von Ossowski I., PLoS One 9(7), 2014
PMID: 25032833
Relaxed selection drives a noisy noncoding transcriptome in members of the Mycobacterium tuberculosis complex.
Dinan AM, Tong P, Lohan AJ, Conlon KM, Miranda-CasoLuengo AA, Malone KM, Gordon SV, Loftus BJ., MBio 5(4), 2014
PMID: 25096875
Dinan AM, Tong P, Lohan AJ, Conlon KM, Miranda-CasoLuengo AA, Malone KM, Gordon SV, Loftus BJ., MBio 5(4), 2014
PMID: 25096875
Genome analysis of Bacillus amyloliquefaciens Subsp. plantarum UCMB5113: a rhizobacterium that improves plant growth and stress management.
Niazi A, Manzoor S, Asari S, Bejai S, Meijer J, Bongcam-Rudloff E., PLoS One 9(8), 2014
PMID: 25119988
Niazi A, Manzoor S, Asari S, Bejai S, Meijer J, Bongcam-Rudloff E., PLoS One 9(8), 2014
PMID: 25119988
Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?
Trujillo ME, Bacigalupe R, Pujic P, Igarashi Y, Benito P, Riesco R, Médigue C, Normand P., PLoS One 9(9), 2014
PMID: 25268993
Trujillo ME, Bacigalupe R, Pujic P, Igarashi Y, Benito P, Riesco R, Médigue C, Normand P., PLoS One 9(9), 2014
PMID: 25268993
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS394, a Multidrug-Resistant and Highly Cytotoxic Wound Isolate from Chronic Ulcus Cruris.
Vorhölter FJ, Arnold M, Wibberg D, Blom J, Winkler A, Viehoever P, Albersmeier A, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M., Genome Announc 2(6), 2014
PMID: 25523779
Vorhölter FJ, Arnold M, Wibberg D, Blom J, Winkler A, Viehoever P, Albersmeier A, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M., Genome Announc 2(6), 2014
PMID: 25523779
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, Escribano MP, Jaenicke S, Estepa J, Guijo MI, Martínez-Luque M, Macías D, Szczepanowski R, Becerra G, Ramirez S, Carmona MI, Gutiérrez O, Manso I, Pühler A, Castillo F, Moreno-Vivián C, Schlüter A, Blasco R., Environ Microbiol 15(1), 2013
PMID: 22998548
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, Escribano MP, Jaenicke S, Estepa J, Guijo MI, Martínez-Luque M, Macías D, Szczepanowski R, Becerra G, Ramirez S, Carmona MI, Gutiérrez O, Manso I, Pühler A, Castillo F, Moreno-Vivián C, Schlüter A, Blasco R., Environ Microbiol 15(1), 2013
PMID: 22998548
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.
Bühlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J Microbiol Methods 92(3), 2013
PMID: 23275135
Bühlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J Microbiol Methods 92(3), 2013
PMID: 23275135
The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.
Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EG, Dorella FA, Aburjaile F, Rocha FS, Nascimento KK, Guimarães LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VA, Schneider MP, Miyoshi A, Tauch A, Azevedo V., PLoS One 8(1), 2013
PMID: 23342011
Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EG, Dorella FA, Aburjaile F, Rocha FS, Nascimento KK, Guimarães LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VA, Schneider MP, Miyoshi A, Tauch A, Azevedo V., PLoS One 8(1), 2013
PMID: 23342011
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.
Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., PLoS One 8(2), 2013
PMID: 23409014
Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., PLoS One 8(2), 2013
PMID: 23409014
Detecting sequence homology at the gene cluster level with MultiGeneBlast.
Medema MH, Takano E, Breitling R., Mol Biol Evol 30(5), 2013
PMID: 23412913
Medema MH, Takano E, Breitling R., Mol Biol Evol 30(5), 2013
PMID: 23412913
Genomics‐informed design of loop‐mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level
Bühlmann A, Pothier JF, Tomlinson JA, Frey JE, Boonham N, Smits THM, Duffy B., Plant Pathol 62(2), 2013
PMID: IND500644012
Bühlmann A, Pothier JF, Tomlinson JA, Frey JE, Boonham N, Smits THM, Duffy B., Plant Pathol 62(2), 2013
PMID: IND500644012
Dialects of the DNA uptake sequence in Neisseriaceae.
Frye SA, Nilsen M, Tønjum T, Ambur OH., PLoS Genet 9(4), 2013
PMID: 23637627
Frye SA, Nilsen M, Tønjum T, Ambur OH., PLoS Genet 9(4), 2013
PMID: 23637627
Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis.
Guimarães LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E., Genome Announc 1(3), 2013
PMID: 23704183
Guimarães LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E., Genome Announc 1(3), 2013
PMID: 23704183
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics.
Smits TH, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B., Syst Appl Microbiol 36(7), 2013
PMID: 23726521
Smits TH, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B., Syst Appl Microbiol 36(7), 2013
PMID: 23726521
Dynamic protein phosphorylation during the growth of Xanthomonas campestris pv. campestris B100 revealed by a gel-based proteomics approach.
Musa YR, Bäsell K, Schatschneider S, Vorhölter FJ, Becher D, Niehaus K., J Biotechnol 167(2), 2013
PMID: 23792782
Musa YR, Bäsell K, Schatschneider S, Vorhölter FJ, Becher D, Niehaus K., J Biotechnol 167(2), 2013
PMID: 23792782
Novel configurations of type I and II CRISPR-Cas systems in Corynebacterium diphtheriae.
Sangal V, Fineran PC, Hoskisson PA., Microbiology 159(pt 10), 2013
PMID: 23904149
Sangal V, Fineran PC, Hoskisson PA., Microbiology 159(pt 10), 2013
PMID: 23904149
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Zverlov VV, Pühler A, Schwarz WH, Schlüter A., J Biotechnol 168(1), 2013
PMID: 23968723
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Zverlov VV, Pühler A, Schwarz WH, Schlüter A., J Biotechnol 168(1), 2013
PMID: 23968723
Comparative genome analysis of Enterobacter cloacae.
Liu WY, Wong CF, Chung KM, Jiang JW, Leung FC., PLoS One 8(9), 2013
PMID: 24069314
Liu WY, Wong CF, Chung KM, Jiang JW, Leung FC., PLoS One 8(9), 2013
PMID: 24069314
Novel configurations of type I and II CRISPR-Cas systems in Corynebacterium diphtheriae.
Sangal V, Fineran PC, Hoskisson PA., Microbiology 159(10), 2013
PMID: 28206911
Sangal V, Fineran PC, Hoskisson PA., Microbiology 159(10), 2013
PMID: 28206911
Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2.
Dam B, Dam S, Blom J, Liesack W., PLoS One 8(10), 2013
PMID: 24130670
Dam B, Dam S, Blom J, Liesack W., PLoS One 8(10), 2013
PMID: 24130670
Draft genome sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis.
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE., J Biotechnol 168(4), 2013
PMID: 24184089
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE., J Biotechnol 168(4), 2013
PMID: 24184089
Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulence-related gene content.
Vandroemme J, Cottyn B, Baeyen S, De Vos P, Maes M., BMC Genomics 14(), 2013
PMID: 24274055
Vandroemme J, Cottyn B, Baeyen S, De Vos P, Maes M., BMC Genomics 14(), 2013
PMID: 24274055
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O., BMC Genomics 14(), 2013
PMID: 24373495
Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O., BMC Genomics 14(), 2013
PMID: 24373495
Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences.
Barzantny H, Brune I, Tauch A., Int J Cosmet Sci 34(1), 2012
PMID: 21790661
Barzantny H, Brune I, Tauch A., Int J Cosmet Sci 34(1), 2012
PMID: 21790661
Genome wide identification of Acidithiobacillus ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators.
Hödar C, Moreno P, di Genova A, Latorre M, Reyes-Jara A, Maass A, González M, Cambiazo V., Biometals 25(1), 2012
PMID: 21830017
Hödar C, Moreno P, di Genova A, Latorre M, Reyes-Jara A, Maass A, González M, Cambiazo V., Biometals 25(1), 2012
PMID: 21830017
Genomics and current genetic understanding of Erwinia amylovora and the fire blight antagonist Pantoea vagans
Kamber T, Smits THM, Rezzonico F, Duffy B., Trees (Berl West) 26(1), 2012
PMID: IND44798016
Kamber T, Smits THM, Rezzonico F, Duffy B., Trees (Berl West) 26(1), 2012
PMID: IND44798016
Genomes-based phylogeny of the genus Xanthomonas.
Rodriguez-R LM, Grajales A, Arrieta-Ortiz ML, Salazar C, Restrepo S, Bernal A., BMC Microbiol 12(), 2012
PMID: 22443110
Rodriguez-R LM, Grajales A, Arrieta-Ortiz ML, Salazar C, Restrepo S, Bernal A., BMC Microbiol 12(), 2012
PMID: 22443110
Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.
Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A., J Bacteriol 194(12), 2012
PMID: 22505676
Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A., J Bacteriol 194(12), 2012
PMID: 22505676
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A., BMC Genomics 13(), 2012
PMID: 22524407
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A., BMC Genomics 13(), 2012
PMID: 22524407
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits TH., Mol Plant Pathol 13(8), 2012
PMID: 22583486
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits TH., Mol Plant Pathol 13(8), 2012
PMID: 22583486
Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae.
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C., BMC Genomics 13(), 2012
PMID: 22958348
Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C., BMC Genomics 13(), 2012
PMID: 22958348
Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M., J Bacteriol 194(24), 2012
PMID: 23043000
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M., J Bacteriol 194(24), 2012
PMID: 23043000
Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases.
Vorhölter FJ, Wiggerich HG, Scheidle H, Sidhu VK, Mrozek K, Küster H, Pühler A, Niehaus K., BMC Microbiol 12(), 2012
PMID: 23082751
Vorhölter FJ, Wiggerich HG, Scheidle H, Sidhu VK, Mrozek K, Küster H, Pühler A, Niehaus K., BMC Microbiol 12(), 2012
PMID: 23082751
Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites.
He P, Hao K, Blom J, Rückert C, Vater J, Mao Z, Wu Y, Hou M, He P, He Y, Borriss R., J Biotechnol 164(2), 2012
PMID: 23357245
He P, Hao K, Blom J, Rückert C, Vater J, Mao Z, Wu Y, Hou M, He P, He Y, Borriss R., J Biotechnol 164(2), 2012
PMID: 23357245
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons.
Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Spröer C, Junge H, Vater J, Pühler A, Klenk HP., Int J Syst Evol Microbiol 61(pt 8), 2011
PMID: 20817842
Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Spröer C, Junge H, Vater J, Pühler A, Klenk HP., Int J Syst Evol Microbiol 61(pt 8), 2011
PMID: 20817842
Comparative genomics of Lactobacillus.
Kant R, Blom J, Palva A, Siezen RJ, de Vos WM., Microb Biotechnol 4(3), 2011
PMID: 21375712
Kant R, Blom J, Palva A, Siezen RJ, de Vos WM., Microb Biotechnol 4(3), 2011
PMID: 21375712
Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics.
Kimbrel JA, Givan SA, Temple TN, Johnson KB, Chang JH., Mol Plant Pathol 12(6), 2011
PMID: 21722296
Kimbrel JA, Givan SA, Temple TN, Johnson KB, Chang JH., Mol Plant Pathol 12(6), 2011
PMID: 21722296
The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes.
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van Passel MW, Kant R, Zoetendal EG, Plugge CM, Derrien M, Malfatti SA, Chain PS, Woyke T, Palva A, de Vos WM, Smidt H., PLoS One 6(3), 2011
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Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.
Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM., Nat Rev Microbiol 9(5), 2011
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Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM., Nat Rev Microbiol 9(5), 2011
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Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1.
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS One 6(7), 2011
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Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS One 6(7), 2011
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Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.
Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehoever P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, Schneider MP, Silva A, Santos CS, Santos LS, Sabbadini P, Dias AA, Hirata R, Mattos-Guaraldi AL, Tauch A., BMC Genomics 12(), 2011
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Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehoever P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, Schneider MP, Silva A, Santos CS, Santos LS, Sabbadini P, Dias AA, Hirata R, Mattos-Guaraldi AL, Tauch A., BMC Genomics 12(), 2011
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Complete genome and comparative analysis of Streptococcus gallolyticus subsp. gallolyticus, an emerging pathogen of infective endocarditis.
Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J., BMC Genomics 12(), 2011
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Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J., BMC Genomics 12(), 2011
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Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.
Schatschneider S, Vorhölter FJ, Rückert C, Becker A, Eisenreich W, Pühler A, Niehaus K., Mol Genet Genomics 286(3-4), 2011
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Schatschneider S, Vorhölter FJ, Rückert C, Becker A, Eisenreich W, Pühler A, Niehaus K., Mol Genet Genomics 286(3-4), 2011
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The genomics of Acinetobacter baumannii: insights into genome plasticity, antimicrobial resistance and pathogenicity.
Imperi F, Antunes LC, Blom J, Villa L, Iacono M, Visca P, Carattoli A., IUBMB Life 63(12), 2011
PMID: 22034231
Imperi F, Antunes LC, Blom J, Villa L, Iacono M, Visca P, Carattoli A., IUBMB Life 63(12), 2011
PMID: 22034231
Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.
Schröder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
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Schröder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
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Calculating orthologs in bacteria and Archaea: a divide and conquer approach.
Halachev MR, Loman NJ, Pallen MJ., PLoS One 6(12), 2011
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Phylogenetic comparative assembly.
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Chen C, Wan H, Zhou Q., Zhongguo Fei Ai Za Zhi 13(2), 2010
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Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehoever P, Arnold W, Bekel T, Blom J, Gartemann KH, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A., BMC Genomics 11(), 2010
PMID: 20137072
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehoever P, Arnold W, Bekel T, Blom J, Gartemann KH, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A., BMC Genomics 11(), 2010
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DraGnET: software for storing, managing and analyzing annotated draft genome sequence data.
Duncan S, Sirkanungo R, Miller L, Phillips GJ., BMC Bioinformatics 11(), 2010
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Duncan S, Sirkanungo R, Miller L, Phillips GJ., BMC Bioinformatics 11(), 2010
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Discovery of Phytophthora infestans genes expressed in planta through mining of cDNA libraries.
Sierra R, Rodríguez-R LM, Chaves D, Pinzón A, Grajales A, Rojas A, Mutis G, Cárdenas M, Burbano D, Jiménez P, Bernal A, Restrepo S., PLoS One 5(3), 2010
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Sierra R, Rodríguez-R LM, Chaves D, Pinzón A, Grajales A, Rojas A, Mutis G, Cárdenas M, Burbano D, Jiménez P, Bernal A, Restrepo S., PLoS One 5(3), 2010
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Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network.
Schröder J, Tauch A., FEMS Microbiol Rev 34(5), 2010
PMID: 20491930
Schröder J, Tauch A., FEMS Microbiol Rev 34(5), 2010
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Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8.
Farnbacher M, Jahns T, Willrodt D, Daniel R, Haas R, Goesmann A, Kurtz S, Rieder G., BMC Genomics 11(), 2010
PMID: 20507619
Farnbacher M, Jahns T, Willrodt D, Daniel R, Haas R, Goesmann A, Kurtz S, Rieder G., BMC Genomics 11(), 2010
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The Waddlia genome: a window into chlamydial biology.
Bertelli C, Collyn F, Croxatto A, Rückert C, Polkinghorne A, Kebbi-Beghdadi C, Goesmann A, Vaughan L, Greub G., PLoS One 5(5), 2010
PMID: 20531937
Bertelli C, Collyn F, Croxatto A, Rückert C, Polkinghorne A, Kebbi-Beghdadi C, Goesmann A, Vaughan L, Greub G., PLoS One 5(5), 2010
PMID: 20531937
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
PMID: 21192786
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
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Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference.
Ryan RP, Koebnik R, Szurek B, Boureau T, Bernal A, Bogdanove A, Dow JM., Cell Microbiol 11(12), 2009
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Ryan RP, Koebnik R, Szurek B, Boureau T, Bernal A, Bogdanove A, Dow JM., Cell Microbiol 11(12), 2009
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