Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor

Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, et al. (2008)
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.

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Abstract / Bemerkung
A total community DNA sample from an agricultural biogas reactor continuously fed with maize silage, green rye, and small proportions of chicken manure has recently been sequenced using massively parallel pyrosequencing. In this Study, the sample was computationally characterized without a prior assembly step, providing quantitative insights into the taxonomic composition and gene content of the underlying microbial community. Clostridiales from the phylum Firmicutes is the most prevalent phylogenetic order, Methanomicrobiales are dominant among methanogenic archaea. An analysis of Operational Taxonomic Units (OTUs) revealed that the entire microbial community is only partially covered by the sequenced sample, despite that estimates suggest only a moderate overall diversity of the community. Furthermore, the results strongly indicate that archaea related to the genus Methanoculleus, using CO2 as electron acceptor and H-2 as electron donor, are the main producers of methane in the analyzed biogas reactor sample. A phylogenetic analysis of glycosyl hydrolase protein families suggests that Clostridia play an important role in the digestion of polysaccharides and oligosaccharides. Finally, the results unveiled that most of the organisms constituting the sample are still unexplored. (C) 2008 Elsevier B.V. All rights reserved.
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JOURNAL OF BIOTECHNOLOGY
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136
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1-2
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91-101
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Krause L, Diaz NN, Edwards RA, et al. Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY. 2008;136(1-2):91-101.
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 91-101. doi:10.1016/j.jbiotec.2008.06.003
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.
Krause, L., et al., 2008. Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), p 91-101.
L. Krause, et al., “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”, JOURNAL OF BIOTECHNOLOGY, vol. 136, 2008, pp. 91-101.
Krause, L., Diaz, N.N., Edwards, R.A., Gartemann, K.-H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K.J., Schlüter, A., Stoye, J., Szczepanowski, R., Tauch, A., Goesmann, A.: Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY. 136, 91-101 (2008).
Krause, Lutz, Diaz, Naryttza N., Edwards, Robert A., Gartemann, Karl-Heinz, Krömeke, Holger, Neuweger, Heiko, Pühler, Alfred, Runte, Kai J., Schlüter, Andreas, Stoye, Jens, Szczepanowski, Rafael, Tauch, Andreas, and Goesmann, Alexander. “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”. JOURNAL OF BIOTECHNOLOGY 136.1-2 (2008): 91-101.

85 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Isolation of lactic acid-forming bacteria from biogas plants.
Bohn J, Yüksel-Dadak A, Dröge S, König H., J Biotechnol 244(), 2017
PMID: 28011128
Technological Microbiology: Development and Applications.
Vitorino LC, Bessa LA., Front Microbiol 8(), 2017
PMID: 28539920
The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor.
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A., J Biotechnol 257(), 2017
PMID: 28595834
Exogenous addition of H2 for an in situ biogas upgrading through biological reduction of carbon dioxide into methane.
Mulat DG, Mosbæk F, Ward AJ, Polag D, Greule M, Keppler F, Nielsen JL, Feilberg A., Waste Manag 68(), 2017
PMID: 28623019
Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge.
Wilkens C, Busk PK, Pilgaard B, Zhang WJ, Nielsen KL, Nielsen PH, Lange L., Biotechnol Biofuels 10(), 2017
PMID: 28649277
Application of next-generation sequencing methods for microbial monitoring of anaerobic digestion of lignocellulosic biomass.
Bozan M, Akyol Ç, Ince O, Aydin S, Ince B., Appl Microbiol Biotechnol 101(18), 2017
PMID: 28779289
Seasonal Variation on Microbial Community and Methane Production during Anaerobic Digestion of Cattle Manure in Brazil.
Resende JA, Godon JJ, Bonnafous A, Arcuri PB, Silva VL, Otenio MH, Diniz CG., Microb Ecol 71(3), 2016
PMID: 26219266
Microbial community structural analysis of an expanded granular sludge bed (EGSB) reactor for beet sugar industrial wastewater (BSIW) treatment.
Ambuchi JJ, Liu J, Wang H, Shan L, Zhou X, Mohammed MO, Feng Y., Appl Microbiol Biotechnol 100(10), 2016
PMID: 26795960
Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.
Campanaro S, Treu L, Kougias PG, De Francisci D, Valle G, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26839589
Conversion of H2 and CO2 to CH4 and acetate in fed-batch biogas reactors by mixed biogas community: a novel route for the power-to-gas concept.
Szuhaj M, Ács N, Tengölics R, Bodor A, Rákhely G, Kovács KL, Bagi Z., Biotechnol Biofuels 9(), 2016
PMID: 27168764
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum SP, Jaenicke S, Fracowiak J, Pühler A, Schlüter A., J Biotechnol 231(), 2016
PMID: 27312700
Efficiency and biotechnological aspects of biogas production from microalgal substrates.
Klassen V, Blifernez-Klassen O, Wobbe L, Schlüter A, Kruse O, Mussgnug JH., J Biotechnol 234(), 2016
PMID: 27449486
Herbinix luporum sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Hahnke S, Zverlov VV, Zverlov VV., Int J Syst Evol Microbiol 66(10), 2016
PMID: 27453473
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A., Biotechnol Biofuels 9(), 2016
PMID: 27462367
Comparative Analysis of Methanogenic Communities in Different Laboratory-Scale Anaerobic Digesters.
Ziganshin AM, Ziganshina EE, Kleinsteuber S, Nikolausz M., Archaea 2016(), 2016
PMID: 28074084
Detection of pathogenic clostridia in biogas plant wastes.
Neuhaus J, Shehata AA, Krüger M., Folia Microbiol (Praha) 60(1), 2015
PMID: 24984829
Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample.
Stöveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM., J Biotechnol 201(), 2015
PMID: 25240439
Augmented biogas production from protein-rich substrates and associated metagenomic changes.
Kovács E, Wirth R, Maróti G, Bagi Z, Nagy K, Minárovits J, Rákhely G, Kovács KL., Bioresour Technol 178(), 2015
PMID: 25316194
Analysis of microbial community structure and composition in leachates from a young landfill by 454 pyrosequencing.
Köchling T, Sanz JL, Gavazza S, Florencio L., Appl Microbiol Biotechnol 99(13), 2015
PMID: 25652654
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions.
Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S, Rottmann N, Siebner C, Pühler A, Schlüter A., Biotechnol Biofuels 8(), 2015
PMID: 25688290
Detection of Clostridium botulinum in liquid manure and biogas plant wastes.
Neuhaus J, Schrödl W, Shehata AA, Krüger M., Folia Microbiol (Praha) 60(5), 2015
PMID: 25753763
Biogas production from brewery spent grain enhanced by bioaugmentation with hydrolytic anaerobic bacteria.
Čater M, Fanedl L, Malovrh Š, Marinšek Logar R., Bioresour Technol 186(), 2015
PMID: 25836034
Exploitation of algal-bacterial associations in a two-stage biohydrogen and biogas generation process.
Wirth R, Lakatos G, Maróti G, Bagi Z, Minárovics J, Nagy K, Kondorosi É, Rákhely G, Kovács KL., Biotechnol Biofuels 8(), 2015
PMID: 25873997
Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome.
Theuerl S, Kohrs F, Benndorf D, Maus I, Wibberg D, Schlüter A, Kausmann R, Heiermann M, Rapp E, Reichl U, Pühler A, Klocke M., Appl Microbiol Biotechnol 99(18), 2015
PMID: 25998656
Effect of the Organic Loading Rate Increase and the Presence of Zeolite on Microbial Community Composition and Process Stability During Anaerobic Digestion of Chicken Wastes.
Ziganshina EE, Belostotskiy DE, Ilinskaya ON, Boulygina EA, Grigoryeva TV, Ziganshin AM., Microb Ecol 70(4), 2015
PMID: 26045158
Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes.
Wei Y, Zhou H, Zhang J, Zhang L, Geng A, Liu F, Zhao G, Wang S, Zhou Z, Yan X., PLoS One 10(6), 2015
PMID: 26070087
Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure.
Sun L, Pope PB, Eijsink VG, Schnürer A., Microb Biotechnol 8(5), 2015
PMID: 26152665
Metagenome approaches revealed a biological prospect for improvement on mesophilic cellulose degradation.
Wang Y, Xia Y, Ju F, Zhang T., Appl Microbiol Biotechnol 99(24), 2015
PMID: 26359182
Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads.
Nolla-Ardèvol V, Peces M, Strous M, Tegetmeyer HE., BMC Microbiol 15(), 2015
PMID: 26680455
Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity.
Lü F, Bize A, Guillot A, Monnet V, Madigou C, Chapleur O, Mazéas L, He P, Bouchez T., ISME J 8(1), 2014
PMID: 23949661
Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor.
Hahnke S, Striesow J, Elvert M, Mollar XP, Klocke M., Int J Syst Evol Microbiol 64(pt 8), 2014
PMID: 24860110
Monitoring of thermophilic adaptation of mesophilic anaerobe fermentation of sugar beet pressed pulp.
Tukacs-Hájos A, Pap B, Maróti G, Szendefy J, Szabó P, Rétfalvi T., Bioresour Technol 166(), 2014
PMID: 24926601
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A., J Biotechnol 188(), 2014
PMID: 25173616
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant.
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A., J Biotechnol 192 Pt A(), 2014
PMID: 25270021
A metagenomic study of the microbial communities in four parallel biogas reactors.
Solli L, Håvelsrud OE, Horn SJ, Rike AG., Biotechnol Biofuels 7(1), 2014
PMID: 25328537
MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A., J Biotechnol 167(2), 2013
PMID: 23026555
A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor.
Li A, Chu Y, Wang X, Ren L, Yu J, Liu X, Yan J, Zhang L, Wu S, Li S., Biotechnol Biofuels 6(1), 2013
PMID: 23320936
Towards a metagenomic understanding on enhanced biomethane production from waste activated sludge after pH 10 pretreatment.
Wong MT, Zhang D, Li J, Hui RK, Tun HM, Brar MS, Park TJ, Chen Y, Leung FC., Biotechnol Biofuels 6(1), 2013
PMID: 23506434
A preliminary metagenomic study of puer tea during pile fermentation.
Lyu C, Chen C, Ge F, Liu D, Zhao S, Chen D., J Sci Food Agric 93(13), 2013
PMID: 23553377
Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials.
Ziganshin AM, Liebetrau J, Pröter J, Kleinsteuber S., Appl Microbiol Biotechnol 97(11), 2013
PMID: 23624683
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Zverlov VV, Pühler A, Schwarz WH, Schlüter A., J Biotechnol 168(1), 2013
PMID: 23968723
A preliminary metagenomic study of puer tea during pile fermentation
Lyu C, Chen C, Ge F, Liu D, Zhao S, Chen D., J Sci Food Agric 93(13), 2013
PMID: IND500690354
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.
Rademacher A, Zakrzewski M, Schlüter A, Schönberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M., FEMS Microbiol Ecol 79(3), 2012
PMID: 22126587
Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates.
Kampmann K, Ratering S, Kramer I, Schmidt M, Zerr W, Schnell S., Appl Environ Microbiol 78(7), 2012
PMID: 22247168
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A., J Biotechnol 158(4), 2012
PMID: 22342600
Monitoring bacterial community structure and variability in time scale in full-scale anaerobic digesters.
Lee SH, Kang HJ, Lee YH, Lee TJ, Han K, Choi Y, Park HD., J Environ Monit 14(7), 2012
PMID: 22426622
The effect of maize silage as co-substrate for swine manure on the bacterial community structure in biogas plants.
Fliegerová K, Mrázek J, Kajan M, Podmirseg SM, Insam H., Folia Microbiol (Praha) 57(4), 2012
PMID: 22491986
Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.
Ritari J, Koskinen K, Hultman J, Kurola JM, Kymäläinen M, Romantschuk M, Paulin L, Auvinen P., BMC Microbiol 12(), 2012
PMID: 22727142
Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.
Wirth R, Kovács E, Maróti G, Bagi Z, Rákhely G, Kovács KL., Biotechnol Biofuels 5(), 2012
PMID: 22673110
Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2(T), Isolated from a sewage sludge digester.
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlüter A., J Bacteriol 194(19), 2012
PMID: 22965103
Methanogenic Community Dynamics during Anaerobic Utilization of Agricultural Wastes.
Ziganshin AM, Ziganshina EE, Kleinsteuber S, Pröter J, Ilinskaya ON., Acta Naturae 4(4), 2012
PMID: 23346384
Bacterial community structure in experimental methanogenic bioreactors and search for pathogenic clostridia as community members.
Dohrmann AB, Baumert S, Klingebiel L, Weiland P, Tebbe CC., Appl Microbiol Biotechnol 89(6), 2011
PMID: 21042796
A meta-analysis of the microbial diversity observed in anaerobic digesters.
Nelson MC, Morrison M, Yu Z., Bioresour Technol 102(4), 2011
PMID: 21194932
Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing.
Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann KH, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Pühler A, Schlüter A, Goesmann A., PLoS One 6(1), 2011
PMID: 21297863
Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles.
Ziganshin AM, Schmidt T, Scholwin F, Il'inskaya ON, Harms H, Kleinsteuber S., Appl Microbiol Biotechnol 89(6), 2011
PMID: 21061007
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes.
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I., PLoS One 6(10), 2011
PMID: 22022440
Cultivation-independent methods applied to the microbial prospection of oil and gas in soil from a sedimentary basin in Brazil.
Miqueletto PB, Andreote FD, Dias AC, Ferreira JC, Dos Santos Neto EV, de Oliveira VM., AMB Express 1(), 2011
PMID: 22018208
Study of the microbial diversity in a full-scale UASB reactor treating domestic wastewater
de Lucena RM, Gavazza S, Florencio L, Kato MT, de Morais MA., World J Microbiol Biotechnol 27(12), 2011
PMID: IND44746093
Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants.
Nettmann E, Bergmann I, Pramschüfer S, Mundt K, Plogsties V, Herrmann C, Klocke M., Appl Environ Microbiol 76(8), 2010
PMID: 20154117
Characterization of an anaerobic population digesting a model substrate for maize in the presence of trace metals.
Pobeheim H, Munk B, Müller H, Berg G, Guebitz GM., Chemosphere 80(8), 2010
PMID: 20615524
Impact of trace element addition on biogas production from food industrial waste--linking process to microbial communities.
Feng XM, Karlsson A, Svensson BH, Bertilsson S., FEMS Microbiol Ecol 74(1), 2010
PMID: 20633047
Mesophilic fermentation of renewable biomass: does hydraulic retention time regulate methanogen diversity?
Krakat N, Schmidt S, Scherer P., Appl Environ Microbiol 76(18), 2010
PMID: 20675458
TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW., BMC Bioinformatics 10(), 2009
PMID: 19210774
Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.
Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehöver P, Pühler A, Schlüter A., J Biotechnol 142(1), 2009
PMID: 19480946
Bioprospecting metagenomes: glycosyl hydrolases for converting biomass.
Li LL, McCorkle SR, Monchy S, Taghavi S, van der Lelie D., Biotechnol Biofuels 2(), 2009
PMID: 19450243
Molecular identification and dynamics of microbial communities in reactor treating organic household waste.
Cardinali-Rezende J, Debarry RB, Colturato LF, Carneiro EV, Chartone-Souza E, Nascimento AM., Appl Microbiol Biotechnol 84(4), 2009
PMID: 19551378
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J., BMC Bioinformatics 10(), 2009
PMID: 20021646
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Krömeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A., J Biotechnol 136(1-2), 2008
PMID: 18597880

31 References

Daten bereitgestellt von Europe PubMed Central.

Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G., Nat. Genet. 25(1), 2000
PMID: 10802651
Biotechnological intensification of biogas production.
Bagi Z, Acs N, Balint B, Horvath L, Dobo K, Perei KR, Rakhely G, Kovacs KL., Appl. Microbiol. Biotechnol. 76(2), 2007
PMID: 17503035
Non-parametric estimation of the number of classes in a population
Chao, Scand. J. Stat. 11(), 1984
Physiology of the thermophilic acetogen Moorella thermoacetica.
Drake HL, Daniel SL., Res. Microbiol. 155(10), 2004
PMID: 15630808
The Pfam protein families database.
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A., Nucleic Acids Res. 36(Database issue), 2007
PMID: 18039703
Counting the uncountable: statistical approaches to estimating microbial diversity.
Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJ., Appl. Environ. Microbiol. 67(10), 2001
PMID: 11571135
Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum.
Kosaka T, Uchiyama T, Ishii S, Enoki M, Imachi H, Kamagata Y, Ohashi A, Harada H, Ikenaga H, Watanabe K., J. Bacteriol. 188(1), 2006
PMID: 16352836
Phylogenetic classification of short environmental DNA fragments.
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J., Nucleic Acids Res. 36(7), 2008
PMID: 18285365
ARB: a software environment for sequence data.
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH., Nucleic Acids Res. 32(4), 2004
PMID: 14985472
Microbial cellulose utilization: fundamentals and biotechnology.
Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS., Microbiol. Mol. Biol. Rev. 66(3), 2002
PMID: 12209002
Genome sequencing in microfabricated high-density picolitre reactors.
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM., Nature 437(7057), 2005
PMID: 16056220
Syntrophomonas wolfei gen. nov. sp. nov., an Anaerobic, Syntrophic, Fatty Acid-Oxidizing Bacterium.
McInerney MJ, Bryant MP, Hespell RB, Costerton JW., Appl. Environ. Microbiol. 41(4), 1981
PMID: 16345745
Clostridium cellulolyticum sp. nov., a cellulolytic mesophilic species from decayed grass
Petitdemange, Int. J. Syst. Bacteriol. 34(), 1984
Syntrophic associations in methanogenic degradation.
Schink B., Prog. Mol. Subcell. Biol. 41(), 2006
PMID: 16623386
Energetics of syntrophic cooperation in methanogenic degradation.
Schink B., Microbiol. Mol. Biol. Rev. 61(2), 1997
PMID: 9184013
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Schluter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Kromeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Puhler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehover P, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18597880
The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features.
Seedorf H, Fricke WF, Veith B, Bruggemann H, Liesegang H, Strittmatter A, Miethke M, Buckel W, Hinderberger J, Li F, Hagemeier C, Thauer RK, Gottschalk G., Proc. Natl. Acad. Sci. U.S.A. 105(6), 2008
PMID: 18218779
Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.
Shimizu T, Ohtani K, Hirakawa H, Ohshima K, Yamashita A, Shiba T, Ogasawara N, Hattori M, Kuhara S, Hayashi H., Proc. Natl. Acad. Sci. U.S.A. 99(2), 2002
PMID: 11792842
Microbial diversity in the deep sea and the underexplored "rare biosphere".
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ., Proc. Natl. Acad. Sci. U.S.A. 103(32), 2006
PMID: 16880384
Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbon-monoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park.
Sokolova TG, Gonzalez JM, Kostrikina NA, Chernyh NA, Slepova TV, Bonch-Osmolovskaya EA, Robb FT., Int. J. Syst. Evol. Microbiol. 54(Pt 6), 2004
PMID: 15545483
A genomic perspective on protein families.
Tatusov RL, Koonin EV, Lipman DJ., Science 278(5338), 1997
PMID: 9381173
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
Clostridium phytofermentans sp. nov., a cellulolytic mesophile from forest soil.
Warnick TA, Methe BA, Leschine SB., Int. J. Syst. Evol. Microbiol. 52(Pt 4), 2002
PMID: 12148621
Differences in Xylan Degradation by Various Noncellulolytic Thermophilic Anaerobes and Clostridium thermocellum.
Wiegel J, Mothershed CP, Puls J., Appl. Environ. Microbiol. 49(3), 1985
PMID: 16346758
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, Zhulin IB, Robb FT, Eisen JA., PLoS Genet. 1(5), 2005
PMID: 16311624

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