Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, et al. (2008)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478.
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Autor*in
Schoen, Christoph;
Blom, JochenUniBi;
Claus, Heike;
Schramm-Glueck, Anja;
Brandt, Petra;
Mueller, Tobias;
Goesmann, AlexanderUniBi ;
Joseph, Biju;
Konietzny, Sebastian;
Kurzai, Oliver;
Schmitt, Corinna;
Friedrich, Torben
Alle
Alle
Einrichtung
Abstract / Bemerkung
Neisseria meningitidis is a leading cause of infectious childhood mortality worldwide. Most research efforts have hitherto focused on disease isolates belonging to only a few hypervirulent clonal lineages. However, up to 10% of the healthy human population is temporarily colonized by genetically diverse strains mostly with little or no pathogenic potential. Currently, little is known about the biology of carriage strains and their evolutionary relationship with disease isolates. The expression of a polysaccharide capsule is the only trait that has been convincingly linked to the pathogenic potential of N. meningitidis. To gain insight into the evolution of virulence traits in this species, whole-genome sequences of three meningococcal carriage isolates were obtained. Gene content comparisons with the available genome sequences from three disease isolates indicate that there is no core pathogenome in N. meningitidis. A comparison of the chromosome structure suggests that a filamentous prophage has mediated large chromosomal rearrangements and the translocation of some candidate virulence genes. Interspecific comparison of the available Neisseria genome sequences and dot blot hybridizations further indicate that the insertion sequence IS1655 is restricted only to N. meningitidis; its low sequence diversity is an indicator of an evolutionarily recent population bottleneck. A genome-based phylogenetic reconstruction provides evidence that N. meningitidis has emerged as an unencapsulated human commensal from a common ancestor with Neisseria gonorrhoeae and Neisseria lactamica and consecutively acquired the genes responsible for capsule synthesis via horizontal gene transfer.
Stichworte
genome evolution;
comparative genomics;
bacterial capsule;
neisserial;
prophage;
IS1655
Erscheinungsjahr
2008
Zeitschriftentitel
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Band
105
Ausgabe
9
Seite(n)
3473-3478
ISSN
0027-8424
eISSN
1091-6490
Page URI
https://pub.uni-bielefeld.de/record/1592257
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Schoen C, Blom J, Claus H, et al. Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008;105(9):3473-3478.
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(9), 3473-3478. https://doi.org/10.1073/pnas.0800151105
Schoen, Christoph, Blom, Jochen, Claus, Heike, Schramm-Glueck, Anja, Brandt, Petra, Mueller, Tobias, Goesmann, Alexander, et al. 2008. “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105 (9): 3473-3478.
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105, 3473-3478.
Schoen, C., et al., 2008. Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(9), p 3473-3478.
C. Schoen, et al., “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 105, 2008, pp. 3473-3478.
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., Schmitt, C., Friedrich, T., Linke, B., Vogel, U., Frosch, M.: Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 105, 3473-3478 (2008).
Schoen, Christoph, Blom, Jochen, Claus, Heike, Schramm-Glueck, Anja, Brandt, Petra, Mueller, Tobias, Goesmann, Alexander, Joseph, Biju, Konietzny, Sebastian, Kurzai, Oliver, Schmitt, Corinna, Friedrich, Torben, Linke, Burkhard, Vogel, Ulrich, and Frosch, Matthias. “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105.9 (2008): 3473-3478.
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Tettelin H, Saunders NJ, Heidelberg J, Jeffries AC, Nelson KE, Eisen JA, Ketchum KA, Hood DW, Peden JF, Dodson RJ, Nelson WC, Gwinn ML, DeBoy R, Peterson JD, Hickey EK, Haft DH, Salzberg SL, White O, Fleischmann RD, Dougherty BA, Mason T, Ciecko A, Parksey DS, Blair E, Cittone H, Clark EB, Cotton MD, Utterback TR, Khouri H, Qin H, Vamathevan J, Gill J, Scarlato V, Masignani V, Pizza M, Grandi G, Sun L, Smith HO, Fraser CM, Moxon ER, Rappuoli R, Venter JC., Science 287(5459), 2000
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Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase.
Kawai M, Uchiyama I, Kobayashi I., DNA Res. 12(6), 2005
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Kawai M, Uchiyama I, Kobayashi I., DNA Res. 12(6), 2005
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A chromosomally integrated bacteriophage in invasive meningococci.
Bille E, Zahar JR, Perrin A, Morelle S, Kriz P, Jolley KA, Maiden MC, Dervin C, Nassif X, Tinsley CR., J. Exp. Med. 201(12), 2005
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Bille E, Zahar JR, Perrin A, Morelle S, Kriz P, Jolley KA, Maiden MC, Dervin C, Nassif X, Tinsley CR., J. Exp. Med. 201(12), 2005
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Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes.
Dunning Hotopp JC, Grifantini R, Kumar N, Tzeng YL, Fouts D, Frigimelica E, Draghi M, Giuliani MM, Rappuoli R, Stephens DS, Grandi G, Tettelin H., Microbiology (Reading, Engl.) 152(Pt 12), 2006
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Dunning Hotopp JC, Grifantini R, Kumar N, Tzeng YL, Fouts D, Frigimelica E, Draghi M, Giuliani MM, Rappuoli R, Stephens DS, Grandi G, Tettelin H., Microbiology (Reading, Engl.) 152(Pt 12), 2006
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Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, Peterson JD, Hauser CR, Sundaram JP, Nelson WC, Madupu R, Brinkac LM, Dodson RJ, Rosovitz MJ, Sullivan SA, Daugherty SC, Haft DH, Selengut J, Gwinn ML, Zhou L, Zafar N, Khouri H, Radune D, Dimitrov G, Watkins K, O'Connor KJ, Smith S, Utterback TR, White O, Rubens CE, Grandi G, Madoff LC, Kasper DL, Telford JL, Wessels MR, Rappuoli R, Fraser CM., Proc. Natl. Acad. Sci. U.S.A. 102(39), 2005
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Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, Peterson JD, Hauser CR, Sundaram JP, Nelson WC, Madupu R, Brinkac LM, Dodson RJ, Rosovitz MJ, Sullivan SA, Daugherty SC, Haft DH, Selengut J, Gwinn ML, Zhou L, Zafar N, Khouri H, Radune D, Dimitrov G, Watkins K, O'Connor KJ, Smith S, Utterback TR, White O, Rubens CE, Grandi G, Madoff LC, Kasper DL, Telford JL, Wessels MR, Rappuoli R, Fraser CM., Proc. Natl. Acad. Sci. U.S.A. 102(39), 2005
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The majority of genes in the pathogenic Neisseria species are present in non-pathogenic Neisseria lactamica, including those designated as 'virulence genes'.
Snyder LA, Saunders NJ., BMC Genomics 7(), 2006
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Snyder LA, Saunders NJ., BMC Genomics 7(), 2006
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Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species.
Stabler RA, Marsden GL, Witney AA, Li Y, Bentley SD, Tang CM, Hinds J., Microbiology (Reading, Engl.) 151(Pt 9), 2005
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Stabler RA, Marsden GL, Witney AA, Li Y, Bentley SD, Tang CM, Hinds J., Microbiology (Reading, Engl.) 151(Pt 9), 2005
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Schoen C, Claus H, Vogel U, Frosch M., 2006
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Schmitt C, Turner D, Boesl M, Abele M, Frosch M, Kurzai O., J. Bacteriol. 189(22), 2007
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Previously unrecognized vaccine candidates against group B meningococcus identified by DNA microarrays.
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Grifantini R, Bartolini E, Muzzi A, Draghi M, Frigimelica E, Berger J, Ratti G, Petracca R, Galli G, Agnusdei M, Giuliani MM, Santini L, Brunelli B, Tettelin H, Rappuoli R, Randazzo F, Grandi G., Nat. Biotechnol. 20(9), 2002
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How genomes rearrange: genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms.
Kawai M, Nakao K, Uchiyama I, Kobayashi I., Gene 383(), 2006
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Kawai M, Nakao K, Uchiyama I, Kobayashi I., Gene 383(), 2006
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Claus H, Elias J, Meinhardt C, Frosch M, Vogel U., J. Clin. Microbiol. 45(9), 2007
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Seiler A, Reinhardt R, Sarkari J, Caugant DA, Achtman M., Mol. Microbiol. 19(4), 1996
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van der Ende A, Hopman CT, Dankert J., Infect. Immun. 67(6), 1999
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van der Ende A, Hopman CT, Dankert J., Infect. Immun. 67(6), 1999
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Analysis of the Piv recombinase-related gene family of Neisseria gonorrhoeae.
Skaar EP, Lecuyer B, Lenich AG, Lazio MP, Perkins-Balding D, Seifert HS, Karls AC., J. Bacteriol. 187(4), 2005
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Liu Y, Harrison PM, Kunin V, Gerstein M., Genome Biol. 5(9), 2004
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Liu Y, Harrison PM, Kunin V, Gerstein M., Genome Biol. 5(9), 2004
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Wagner A., Mol. Biol. Evol. 23(4), 2005
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Wagner A., Mol. Biol. Evol. 23(4), 2005
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The influence of recombination on the population structure and evolution of the human pathogen Neisseria meningitidis.
Holmes EC, Urwin R, Maiden MC., Mol. Biol. Evol. 16(6), 1999
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Holmes EC, Urwin R, Maiden MC., Mol. Biol. Evol. 16(6), 1999
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Networks and groups within the genus Neisseria: analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species.
Smith NH, Holmes EC, Donovan GM, Carpenter GA, Spratt BG., Mol. Biol. Evol. 16(6), 1999
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Smith NH, Holmes EC, Donovan GM, Carpenter GA, Spratt BG., Mol. Biol. Evol. 16(6), 1999
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Mauve: multiple alignment of conserved genomic sequence with rearrangements.
Darling AC, Mau B, Blattner FR, Perna NT., Genome Res. 14(7), 2004
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Darling AC, Mau B, Blattner FR, Perna NT., Genome Res. 14(7), 2004
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Origin and fate of repeats in bacteria.
Achaz G, Rocha EP, Netter P, Coissac E., Nucleic Acids Res. 30(13), 2002
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Achaz G, Rocha EP, Netter P, Coissac E., Nucleic Acids Res. 30(13), 2002
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Kroll JS, Wilks KE, Farrant JL, Langford PR., Proc. Natl. Acad. Sci. U.S.A. 95(21), 1998
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Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM., Science 309(5741), 2005
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Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM., Science 309(5741), 2005
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A model of the statistical power of comparative genome sequence analysis.
Eddy SR., PLoS Biol. 3(1), 2005
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Eddy SR., PLoS Biol. 3(1), 2005
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ISfinder: the reference centre for bacterial insertion sequences.
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M., Nucleic Acids Res. 34(Database issue), 2006
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Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M., Nucleic Acids Res. 34(Database issue), 2006
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Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J., Bioinformatics 21(16), 2005
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Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J., Bioinformatics 21(16), 2005
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Site-specific insertion of IS1301 and distribution in Neisseria meningitidis strains.
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SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges.
Lin YC, Lu CL, Liu YC, Tang CY., Nucleic Acids Res. 34(Web Server issue), 2006
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Lin YC, Lu CL, Liu YC, Tang CY., Nucleic Acids Res. 34(Web Server issue), 2006
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SplitsTree: analyzing and visualizing evolutionary data.
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Bryant D, Moulton V., Mol. Biol. Evol. 21(2), 2003
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Phylogenetic trees based on gene content.
Huson DH, Steel M., Bioinformatics 20(13), 2004
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Huson DH, Steel M., Bioinformatics 20(13), 2004
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