Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7
Strauch E, Hammerl JA, Konietzny A, Schneiker-Bekel S, Arnold W, Goesmann A, Pühler A, Beutin L (2008)
Infection and Immunity 76(12): 5466-5477.
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Autor*in
Strauch, Eckhard;
Hammerl, Jens Andre;
Konietzny, Antje;
Schneiker-Bekel, SusanneUniBi;
Arnold, WalterUniBi;
Goesmann, AlexanderUniBi ;
Pühler, AlfredUniBi ;
Beutin, Lothar
Einrichtung
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Institut für Bioinformatik
Abstract / Bemerkung
The production of Shiga toxin (Stx) (verocytotoxin) is a major virulence factor of Escherichia coli O157:H7 strains (Shiga toxin-producing E. coli [STEC] O157). Two types of Shiga toxins, designated Stx1 and Stx2, are produced in STEC O157. Variants of the Stx2 type (Stx2, Stx2c) are associated with high virulences of these strains for humans. A bacteriophage designated 2851 from a human STEC O157 encoding the Stx2c variant was described previously. Nucleotide sequence analysis of the phage 2851 genome revealed 75 predicted coding sequences and indicated a mosaic structure typical for lambdoid phages. Analyses of free phages and K-12 phage 2851 lysogens revealed that upon excision from the bacterial chromosome, the loss of a phage-encoded IS629 element leads to fusion of phage antA and antB genes, with the generation of a recombined antAB gene encoding a strong antirepressor. In wild-type E. coli O157 as well as in K-12 strains, phage 2851 was found to be integrated in the sbcB locus. Additionally, phage 2851 carries an open reading frame which encodes an OspB-like type III effector similar to that found in Shigella spp. Investigation of 39 stx(2c) E. coli O157 strains revealed that all except 1 were positive for most phage 2851-specific genes and possessed a prophage with the same border sequences integrated into the sbcB locus. Phage 2851-specific sequences were absent from most stx(2c)-negative E. coli O157 strains, and we suggest that phage 2851-like phages contributed significantly to the dissemination of the Stx2c variant toxin within this group of E. coli.
Erscheinungsjahr
2008
Zeitschriftentitel
Infection and Immunity
Band
76
Ausgabe
12
Seite(n)
5466-5477
ISSN
0019-9567
Page URI
https://pub.uni-bielefeld.de/record/1990198
Zitieren
Strauch E, Hammerl JA, Konietzny A, et al. Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity. 2008;76(12):5466-5477.
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., et al. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity, 76(12), 5466-5477. https://doi.org/10.1128/IAI.00875-08
Strauch, Eckhard, Hammerl, Jens Andre, Konietzny, Antje, Schneiker-Bekel, Susanne, Arnold, Walter, Goesmann, Alexander, Pühler, Alfred, and Beutin, Lothar. 2008. “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”. Infection and Immunity 76 (12): 5466-5477.
Strauch, E., Hammerl, J. A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., and Beutin, L. (2008). Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity 76, 5466-5477.
Strauch, E., et al., 2008. Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity, 76(12), p 5466-5477.
E. Strauch, et al., “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”, Infection and Immunity, vol. 76, 2008, pp. 5466-5477.
Strauch, E., Hammerl, J.A., Konietzny, A., Schneiker-Bekel, S., Arnold, W., Goesmann, A., Pühler, A., Beutin, L.: Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infection and Immunity. 76, 5466-5477 (2008).
Strauch, Eckhard, Hammerl, Jens Andre, Konietzny, Antje, Schneiker-Bekel, Susanne, Arnold, Walter, Goesmann, Alexander, Pühler, Alfred, and Beutin, Lothar. “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”. Infection and Immunity 76.12 (2008): 5466-5477.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
EMBL
8 Einträge gefunden, die diesen Artikel zitieren
Enterobacteria phage 2851, complete genome (EMBL: FM180578)
Sequence length: 57248
Download in FASTA format
Sequence length: 57248
Download in FASTA format
UNIPROT
82 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
Putative uncharacterized protein (UNIPROT: Q5TJL4)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Putative C4-type zinc finger protein (UNIPROT: B6ETA0)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Putative uncharacterized protein (UNIPROT: B6ET97)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Bacteriophage replication protein O (UNIPROT: B6ETB6)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Major head protein Gp17 (UNIPROT: B6ETE8)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Putative secreted protein (UNIPROT: B6ETE5)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Putative tail assembly protein (UNIPROT: B6ETG2)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
Putative uncharacterized protein (UNIPROT: B6ETF0)
Organism: Enterobacteria phage 2851
Download in FASTA format
Organism: Enterobacteria phage 2851
Download in FASTA format
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AUTHOR UNKNOWN, 1988
The Shiga toxin 1-converting bacteriophage BP-4795 encodes an NleA-like type III effector protein.
Creuzburg K, Recktenwald J, Kuhle V, Herold S, Hensel M, Schmidt H., J. Bacteriol. 187(24), 2005
PMID: 16321954
Creuzburg K, Recktenwald J, Kuhle V, Herold S, Hensel M, Schmidt H., J. Bacteriol. 187(24), 2005
PMID: 16321954
Assembling genomic DNA sequences with PHRAP.
de la Bastide M, McCombie WR., Curr Protoc Bioinformatics Chapter 11(), 2007
PMID: 18428783
de la Bastide M, McCombie WR., Curr Protoc Bioinformatics Chapter 11(), 2007
PMID: 18428783
AUTHOR UNKNOWN, 2007
Base-calling of automated sequencer traces using phred. II. Error probabilities.
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
Ewing B, Hillier L, Wendl MC, Green P., Genome Res. 8(3), 1998
PMID: 9521921
Ewing B, Hillier L, Wendl MC, Green P., Genome Res. 8(3), 1998
PMID: 9521921
Escherichia coli harboring Shiga toxin 2 gene variants: frequency and association with clinical symptoms.
Friedrich AW, Bielaszewska M, Zhang WL, Pulz M, Kuczius T, Ammon A, Karch H., J. Infect. Dis. 185(1), 2001
PMID: 11756984
Friedrich AW, Bielaszewska M, Zhang WL, Pulz M, Kuczius T, Ammon A, Karch H., J. Infect. Dis. 185(1), 2001
PMID: 11756984
Shiga toxin 1c-producing Escherichia coli strains: phenotypic and genetic characterization and association with human disease.
Friedrich AW, Borell J, Bielaszewska M, Fruth A, Tschape H, Karch H., J. Clin. Microbiol. 41(6), 2003
PMID: 12791863
Friedrich AW, Borell J, Bielaszewska M, Fruth A, Tschape H, Karch H., J. Clin. Microbiol. 41(6), 2003
PMID: 12791863
Isolation and genetic characterization of a coinfection of non-O157 Shiga toxin-producing Escherichia coli.
Gilmour MW, Tabor H, Wang G, Clark CG, Tracz DM, Olson AB, Mascarenhas M, Karmali MA, Mailman T, Ng LK., J. Clin. Microbiol. 45(11), 2007
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Gilmour MW, Tabor H, Wang G, Clark CG, Tracz DM, Olson AB, Mascarenhas M, Karmali MA, Mailman T, Ng LK., J. Clin. Microbiol. 45(11), 2007
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Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Automated finishing with autofinish.
Gordon D, Desmarais C, Green P., Genome Res. 11(4), 2001
PMID: 11282977
Gordon D, Desmarais C, Green P., Genome Res. 11(4), 2001
PMID: 11282977
TIGRFAMs: a protein family resource for the functional identification of proteins.
Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, Paulsen IT, White O., Nucleic Acids Res. 29(1), 2001
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Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, Paulsen IT, White O., Nucleic Acids Res. 29(1), 2001
PMID: 11125044
Shiga toxin-encoding bacteriophages--genomes in motion.
Herold S, Karch H, Schmidt H., Int. J. Med. Microbiol. 294(2-3), 2004
PMID: 15493821
Herold S, Karch H, Schmidt H., Int. J. Med. Microbiol. 294(2-3), 2004
PMID: 15493821
Nucleotide sequence analysis of the structural genes for Shiga-like toxin I encoded by bacteriophage 933J from Escherichia coli.
Jackson MP, Newland JW, Holmes RK, O'Brien AD., Microb. Pathog. 2(2), 1987
PMID: 3333796
Jackson MP, Newland JW, Holmes RK, O'Brien AD., Microb. Pathog. 2(2), 1987
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AUTHOR UNKNOWN, 2006
Mosaic structure of Shiga-toxin-2-encoding phages isolated from Escherichia coli O157:H7 indicates frequent gene exchange between lambdoid phage genomes.
Johansen BK, Wasteson Y, Granum PE, Brynestad S., Microbiology (Reading, Engl.) 147(Pt 7), 2001
PMID: 11429469
Johansen BK, Wasteson Y, Granum PE, Brynestad S., Microbiology (Reading, Engl.) 147(Pt 7), 2001
PMID: 11429469
KEGG: kyoto encyclopedia of genes and genomes.
Kanehisa M, Goto S., Nucleic Acids Res. 28(1), 2000
PMID: 10592173
Kanehisa M, Goto S., Nucleic Acids Res. 28(1), 2000
PMID: 10592173
AUTHOR UNKNOWN, 1997
Detection of various variant verotoxin genes in Escherichia coli by polymerase chain reaction.
Lin Z, Kurazono H, Yamasaki S, Takeda Y., Microbiol. Immunol. 37(7), 1993
PMID: 8231968
Lin Z, Kurazono H, Yamasaki S, Takeda Y., Microbiol. Immunol. 37(7), 1993
PMID: 8231968
REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
PMID: 16922601
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
PMID: 16922601
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
Food-related illness and death in the United States.
Mead PS, Slutsker L, Dietz V, McCaig LF, Bresee JS, Shapiro C, Griffin PM, Tauxe RV., Emerging Infect. Dis. 5(5), 1999
PMID: 10511517
Mead PS, Slutsker L, Dietz V, McCaig LF, Bresee JS, Shapiro C, Griffin PM, Tauxe RV., Emerging Infect. Dis. 5(5), 1999
PMID: 10511517
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
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Shiga toxin 2-converting bacteriophages associated with clonal variability in Escherichia coli O157:H7 strains of human origin isolated from a single outbreak.
Muniesa M, de Simon M, Prats G, Ferrer D, Panella H, Jofre J., Infect. Immun. 71(8), 2003
PMID: 12874335
Muniesa M, de Simon M, Prats G, Ferrer D, Panella H, Jofre J., Infect. Immun. 71(8), 2003
PMID: 12874335
Subtyping of Shiga toxin 2 variants in human-derived Shiga toxin-producing Escherichia coli strains isolated in Japan.
Nakao H, Kimura K, Murakami H, Maruyama T, Takeda T., FEMS Immunol. Med. Microbiol. 34(4), 2002
PMID: 12443829
Nakao H, Kimura K, Murakami H, Maruyama T, Takeda T., FEMS Immunol. Med. Microbiol. 34(4), 2002
PMID: 12443829
Arrangement and functional identification of genes in the regulatory region of lambdoid phage H-19B, a carrier of a Shiga-like toxin.
Neely MN, Friedman DI., Gene 223(1-2), 1998
PMID: 9858702
Neely MN, Friedman DI., Gene 223(1-2), 1998
PMID: 9858702
Relationship of genetic type of Shiga toxin to manifestation of bloody diarrhea due to enterohemorrhagic Escherichia coli serogroup O157 isolates in Osaka City, Japan.
Nishikawa Y, Zhou Z, Hase A, Ogasawara J, Cheasty T, Haruki K., J. Clin. Microbiol. 38(6), 2000
PMID: 10835027
Nishikawa Y, Zhou Z, Hase A, Ogasawara J, Cheasty T, Haruki K., J. Clin. Microbiol. 38(6), 2000
PMID: 10835027
Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning.
Ohnishi M, Terajima J, Kurokawa K, Nakayama K, Murata T, Tamura K, Ogura Y, Watanabe H, Hayashi T., Proc. Natl. Acad. Sci. U.S.A. 99(26), 2002
PMID: 12481030
Ohnishi M, Terajima J, Kurokawa K, Nakayama K, Murata T, Tamura K, Ogura Y, Watanabe H, Hayashi T., Proc. Natl. Acad. Sci. U.S.A. 99(26), 2002
PMID: 12481030
Epidemiology of Escherichia coli O157:H7 outbreaks, United States, 1982-2002.
Rangel JM, Sparling PH, Crowe C, Griffin PM, Swerdlow DL., Emerging Infect. Dis. 11(4), 2005
PMID: 15829201
Rangel JM, Sparling PH, Crowe C, Griffin PM, Swerdlow DL., Emerging Infect. Dis. 11(4), 2005
PMID: 15829201
Apyrase, the product of the virulence plasmid-encoded phoN2 (apy) gene of Shigella flexneri, is necessary for proper unipolar IcsA localization and for efficient intercellular spread.
Santapaola D, Del Chierico F, Petrucca A, Uzzau S, Casalino M, Colonna B, Sessa R, Berlutti F, Nicoletti M., J. Bacteriol. 188(4), 2006
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Santapaola D, Del Chierico F, Petrucca A, Uzzau S, Casalino M, Colonna B, Sessa R, Berlutti F, Nicoletti M., J. Bacteriol. 188(4), 2006
PMID: 16452446
AUTHOR UNKNOWN, 2005
Two copies of Shiga-like toxin II-related genes common in enterohemorrhagic Escherichia coli strains are responsible for the antigenic heterogeneity of the O157:H- strain E32511.
Schmitt CK, McKee ML, O'Brien AD., Infect. Immun. 59(3), 1991
PMID: 1997410
Schmitt CK, McKee ML, O'Brien AD., Infect. Immun. 59(3), 1991
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Insertion site occupancy by stx2 bacteriophages depends on the locus availability of the host strain chromosome.
Serra-Moreno R, Jofre J, Muniesa M., J. Bacteriol. 189(18), 2007
PMID: 17644594
Serra-Moreno R, Jofre J, Muniesa M., J. Bacteriol. 189(18), 2007
PMID: 17644594
Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: integrations, excisions, truncations, and evolutionary implications.
Shaikh N, Tarr PI., J. Bacteriol. 185(12), 2003
PMID: 12775697
Shaikh N, Tarr PI., J. Bacteriol. 185(12), 2003
PMID: 12775697
Characterization of a Shiga toxin-encoding temperate bacteriophage of Shigella sonnei.
Strauch E, Lurz R, Beutin L., Infect. Immun. 69(12), 2001
PMID: 11705937
Strauch E, Lurz R, Beutin L., Infect. Immun. 69(12), 2001
PMID: 11705937
First-time isolation and characterization of a bacteriophage encoding the Shiga toxin 2c variant, which is globally spread in strains of Escherichia coli O157.
Strauch E, Schaudinn C, Beutin L., Infect. Immun. 72(12), 2004
PMID: 15557626
Strauch E, Schaudinn C, Beutin L., Infect. Immun. 72(12), 2004
PMID: 15557626
Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli.
Wagner PL, Livny J, Neely MN, Acheson DW, Friedman DI, Waldor MK., Mol. Microbiol. 44(4), 2002
PMID: 12010491
Wagner PL, Livny J, Neely MN, Acheson DW, Friedman DI, Waldor MK., Mol. Microbiol. 44(4), 2002
PMID: 12010491
Global impact of sdiA amplification revealed by comprehensive gene expression profiling of Escherichia coli.
Wei Y, Lee JM, Smulski DR, LaRossa RA., J. Bacteriol. 183(7), 2001
PMID: 11244066
Wei Y, Lee JM, Smulski DR, LaRossa RA., J. Bacteriol. 183(7), 2001
PMID: 11244066
Verocytotoxin-producing Escherichia coli (VTEC) O157 and other VTEC from human infections in England and Wales: 1995-1998.
Willshaw GA, Cheasty T, Smith HR, O'Brien SJ, Adak GK., J. Med. Microbiol. 50(2), 2001
PMID: 11211220
Willshaw GA, Cheasty T, Smith HR, O'Brien SJ, Adak GK., J. Med. Microbiol. 50(2), 2001
PMID: 11211220
Vero cytotoxin-producing Escherichia coli O157 outbreaks in England and Wales, 1995: phenotypic methods and genotypic subtyping.
Willshaw GA, Smith HR, Cheasty T, Wall PG, Rowe B., Emerging Infect. Dis. 3(4), 1997
PMID: 9366610
Willshaw GA, Smith HR, Cheasty T, Wall PG, Rowe B., Emerging Infect. Dis. 3(4), 1997
PMID: 9366610
Transcriptional analysis of genes encoding Shiga toxin 2 and its variants in Escherichia coli.
Zhang W, Bielaszewska M, Friedrich AW, Kuczius T, Karch H., Appl. Environ. Microbiol. 71(1), 2005
PMID: 15640236
Zhang W, Bielaszewska M, Friedrich AW, Kuczius T, Karch H., Appl. Environ. Microbiol. 71(1), 2005
PMID: 15640236
Genotypic characterization and prevalence of virulence factors among Canadian Escherichia coli O157:H7 strains.
Ziebell K, Steele M, Zhang Y, Benson A, Taboada EN, Laing C, McEwen S, Ciebin B, Johnson R, Gannon V., Appl. Environ. Microbiol. 74(14), 2008
PMID: 18487402
Ziebell K, Steele M, Zhang Y, Benson A, Taboada EN, Laing C, McEwen S, Ciebin B, Johnson R, Gannon V., Appl. Environ. Microbiol. 74(14), 2008
PMID: 18487402
OspF and OspC1 are Shigella flexneri type III secretion system effectors that are required for postinvasion aspects of virulence.
Zurawski DV, Mitsuhata C, Mumy KL, McCormick BA, Maurelli AT., Infect. Immun. 74(10), 2006
PMID: 16988276
Zurawski DV, Mitsuhata C, Mumy KL, McCormick BA, Maurelli AT., Infect. Immun. 74(10), 2006
PMID: 16988276
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