A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data
Becker A, Barnett MJ, Capela D, Dondrup M, Kamp P-B, Krol E, Linke B, Rüberg S, Runte K, Schroeder BK, Weidner S, et al. (2009)
JOURNAL OF BIOTECHNOLOGY 140(1-2): 45-50.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Becker, Anke;
Barnett, Melanie J.;
Capela, Delphine;
Dondrup, Michael;
Kamp, Paul-BertramUniBi;
Krol, Elizaveta;
Linke, BurkhardUniBi;
Rüberg, Silvia;
Runte, Kai;
Schroeder, Brenda K.;
Weidner, StefanUniBi;
Yurgel, Svetlana N.
Alle
Alle
Einrichtung
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Biologie
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Biologie
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Stichworte
Medicago;
alpha-Proteobacteria;
Symbiosis;
Symbiotic nitrogen fixation;
Rhizobiales
Erscheinungsjahr
2009
Zeitschriftentitel
JOURNAL OF BIOTECHNOLOGY
Band
140
Ausgabe
1-2
Seite(n)
45-50
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/1634467
Zitieren
Becker A, Barnett MJ, Capela D, et al. A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY. 2009;140(1-2):45-50.
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), 45-50. https://doi.org/10.1016/j.jbiotec.2008.11.006
Becker, Anke, Barnett, Melanie J., Capela, Delphine, Dondrup, Michael, Kamp, Paul-Bertram, Krol, Elizaveta, Linke, Burkhard, et al. 2009. “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”. JOURNAL OF BIOTECHNOLOGY 140 (1-2): 45-50.
Becker, A., Barnett, M. J., Capela, D., Dondrup, M., Kamp, P. - B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B. K., et al. (2009). A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY 140, 45-50.
Becker, A., et al., 2009. A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY, 140(1-2), p 45-50.
A. Becker, et al., “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”, JOURNAL OF BIOTECHNOLOGY, vol. 140, 2009, pp. 45-50.
Becker, A., Barnett, M.J., Capela, D., Dondrup, M., Kamp, P.-B., Krol, E., Linke, B., Rüberg, S., Runte, K., Schroeder, B.K., Weidner, S., Yurgel, S.N., Batut, J., Long, S.R., Pühler, A., Goesmann, A.: A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data. JOURNAL OF BIOTECHNOLOGY. 140, 45-50 (2009).
Becker, Anke, Barnett, Melanie J., Capela, Delphine, Dondrup, Michael, Kamp, Paul-Bertram, Krol, Elizaveta, Linke, Burkhard, Rüberg, Silvia, Runte, Kai, Schroeder, Brenda K., Weidner, Stefan, Yurgel, Svetlana N., Batut, Jacques, Long, Sharon R., Pühler, Alfred, and Goesmann, Alexander. “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”. JOURNAL OF BIOTECHNOLOGY 140.1-2 (2009): 45-50.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
22 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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AraC-like transcriptional activator CuxR binds c-di-GMP by a PilZ-like mechanism to regulate extracellular polysaccharide production.
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A Proteomic View on the Role of Legume Symbiotic Interactions.
Larrainzar E, Wienkoop S., Front Plant Sci 8(), 2017
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Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.
Schlüter JP, Reinkensmeier J, Barnett MJ, Lang C, Krol E, Giegerich R, Long SR, Becker A., BMC Genomics 14(), 2013
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Schlüter JP, Reinkensmeier J, Barnett MJ, Lang C, Krol E, Giegerich R, Long SR, Becker A., BMC Genomics 14(), 2013
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Functional analysis of the copy 1 of the fixNOQP operon of Ensifer meliloti under free-living micro-oxic and symbiotic conditions.
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules.
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Heath KD, Burke PV, Stinchcombe JR., Mol Ecol 21(19), 2012
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Pickering BS, Yudistira H, Oresnik IJ., Appl Environ Microbiol 78(19), 2012
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Genome studies at the PAG 2011 conference.
Appels R, Adelson DL, Moolhuijzen P, Webster H, Barrero R, Bellgard M., Funct Integr Genomics 11(1), 2011
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An ABC-type cobalt transport system is essential for growth of Sinorhizobium meliloti at trace metal concentrations.
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Reinkensmeier J, Schlüter JP, Giegerich R, Becker A., Genes (Basel) 2(4), 2011
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Schlüter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jänicke S, Becker JD, Giegerich R, Becker A., BMC Genomics 11(), 2010
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Schlüter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jänicke S, Becker JD, Giegerich R, Becker A., BMC Genomics 11(), 2010
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Towards a two-dimensional proteomic reference map of Bradyrhizobium japonicum CPAC 15: spotlighting "hypothetical proteins".
Batista JS, Torres AR, Hungria M., Proteomics 10(17), 2010
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Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980569
Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980569
The LuxR homolog ExpR, in combination with the Sin quorum sensing system, plays a central role in Sinorhizobium meliloti gene expression.
Hoang HH, Becker A, Gonzalez JE., J. Bacteriol. 186(16), 2004
PMID: 15292148
Hoang HH, Becker A, Gonzalez JE., J. Bacteriol. 186(16), 2004
PMID: 15292148
Mutational analysis of the Sinorhizobium meliloti short-chain dehydrogenase/reductase family reveals substantial contribution to symbiosis and catabolic diversity.
Jacob AI, Adham SA, Capstick DS, Clark SR, Spence T, Charles TC., Mol. Plant Microbe Interact. 21(7), 2008
PMID: 18533838
Jacob AI, Adham SA, Capstick DS, Clark SR, Spence T, Charles TC., Mol. Plant Microbe Interact. 21(7), 2008
PMID: 18533838
How rhizobial symbionts invade plants: the Sinorhizobium-Medicago model.
Jones KM, Kobayashi H, Davies BW, Taga ME, Walker GC., Nat. Rev. Microbiol. 5(8), 2007
PMID: 17632573
Jones KM, Kobayashi H, Davies BW, Taga ME, Walker GC., Nat. Rev. Microbiol. 5(8), 2007
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Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.
Kaneko T, Nakamura Y, Sato S, Asamizu E, Kato T, Sasamoto S, Watanabe A, Idesawa K, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Mochizuki Y, Nakayama S, Nakazaki N, Shimpo S, Sugimoto M, Takeuchi C, Yamada M, Tabata S., DNA Res. 7(6), 2000
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PMID: 11214968
Global transcriptional analysis of phosphate stress responses in strains 1021 and 2011
Krol E, Becker A., 2004
Krol E, Becker A., 2004
Two new Sinorhizobium meliloti LysR-type transcriptional regulators required for nodulation.
Luo L, Yao SY, Becker A, Ruberg S, Yu GQ, Zhu JB, Cheng HP., J. Bacteriol. 187(13), 2005
PMID: 15968067
Luo L, Yao SY, Becker A, Ruberg S, Yu GQ, Zhu JB, Cheng HP., J. Bacteriol. 187(13), 2005
PMID: 15968067
Genomes of the symbiotic nitrogen-fixing bacteria of legumes.
MacLean AM, Finan TM, Sadowsky MJ., Plant Physiol. 144(2), 2007
PMID: 17556525
MacLean AM, Finan TM, Sadowsky MJ., Plant Physiol. 144(2), 2007
PMID: 17556525
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NodMutDB: a database for genes and mutants involved in symbiosis.
Mao C, Qiu J, Wang C, Charles TC, Sobral BW., Bioinformatics 21(12), 2005
PMID: 15817696
Mao C, Qiu J, Wang C, Charles TC, Sobral BW., Bioinformatics 21(12), 2005
PMID: 15817696
Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system.
Mao C, Evans C, Jensen RV, Sobral BW., BMC Microbiol. 8(), 2008
PMID: 18454850
Mao C, Evans C, Jensen RV, Sobral BW., BMC Microbiol. 8(), 2008
PMID: 18454850
Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome.
Mauchline TH, Fowler JE, East AK, Sartor AL, Zaheer R, Hosie AH, Poole PS, Finan TM., Proc. Natl. Acad. Sci. U.S.A. 103(47), 2006
PMID: 17101990
Mauchline TH, Fowler JE, East AK, Sartor AL, Zaheer R, Hosie AH, Poole PS, Finan TM., Proc. Natl. Acad. Sci. U.S.A. 103(47), 2006
PMID: 17101990
Genetic mapping of Rhizobium meliloti.
Meade HM, Signer ER., Proc. Natl. Acad. Sci. U.S.A. 74(5), 1977
PMID: 266730
Meade HM, Signer ER., Proc. Natl. Acad. Sci. U.S.A. 74(5), 1977
PMID: 266730
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti.
Pobigaylo N, Wetter D, Szymczak S, Schiller U, Kurtz S, Meyer F, Nattkemper TW, Becker A., Appl. Environ. Microbiol. 72(6), 2006
PMID: 16751548
Pobigaylo N, Wetter D, Szymczak S, Schiller U, Kurtz S, Meyer F, Nattkemper TW, Becker A., Appl. Environ. Microbiol. 72(6), 2006
PMID: 16751548
Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants.
Pobigaylo N, Szymczak S, Nattkemper TW, Becker A., Mol. Plant Microbe Interact. 21(2), 2008
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Pobigaylo N, Szymczak S, Nattkemper TW, Becker A., Mol. Plant Microbe Interact. 21(2), 2008
PMID: 18184066
Metabolic changes of rhizobia in legume nodules.
Prell J, Poole P., Trends Microbiol. 14(4), 2006
PMID: 16520035
Prell J, Poole P., Trends Microbiol. 14(4), 2006
PMID: 16520035
Nitrogen-fixing nodules from rose wood legume trees (Dalbergia spp.) endemic to Madagascar host seven different genera belonging to alpha- and beta-Proteobacteria.
Rasolomampianina R, Bailly X, Fetiarison R, Rabevohitra R, Bena G, Ramaroson L, Raherimandimby M, Moulin L, De Lajudie P, Dreyfus B, Avarre JC., Mol. Ecol. 14(13), 2005
PMID: 16262864
Rasolomampianina R, Bailly X, Fetiarison R, Rabevohitra R, Bena G, Ramaroson L, Raherimandimby M, Moulin L, De Lajudie P, Dreyfus B, Avarre JC., Mol. Ecol. 14(13), 2005
PMID: 16262864
Response of Sinorhizobium meliloti to elevated concentrations of cadmium and zinc.
Rossbach S, Mai DJ, Carter EL, Sauviac L, Capela D, Bruand C, de Bruijn FJ., Appl. Environ. Microbiol. 74(13), 2008
PMID: 18469129
Rossbach S, Mai DJ, Carter EL, Sauviac L, Capela D, Bruand C, de Bruijn FJ., Appl. Environ. Microbiol. 74(13), 2008
PMID: 18469129
Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
Ruberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang Y, Puhler A, Weidner S, Becker A., J. Biotechnol. 106(2-3), 2003
PMID: 14651866
Ruberg S, Tian ZX, Krol E, Linke B, Meyer F, Wang Y, Puhler A, Weidner S, Becker A., J. Biotechnol. 106(2-3), 2003
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An extracytoplasmic function sigma factor acts as a general stress response regulator in Sinorhizobium meliloti.
Sauviac L, Philippe H, Phok K, Bruand C., J. Bacteriol. 189(11), 2007
PMID: 17400745
Sauviac L, Philippe H, Phok K, Bruand C., J. Bacteriol. 189(11), 2007
PMID: 17400745
Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome.
Schroeder BK, House BL, Mortimer MW, Yurgel SN, Maloney SC, Ward KL, Kahn ML., Appl. Environ. Microbiol. 71(10), 2005
PMID: 16204497
Schroeder BK, House BL, Mortimer MW, Yurgel SN, Maloney SC, Ward KL, Kahn ML., Appl. Environ. Microbiol. 71(10), 2005
PMID: 16204497
A broad host range mobilisation system for genetic engineering: transposon mutagenesis in gram-negative bacteria
Simon R, Priefer U, Pühler A., 1983
Simon R, Priefer U, Pühler A., 1983
On the total number of genes and their length distribution in complete microbial genomes.
Skovgaard M, Jensen LJ, Brunak S, Ussery D, Krogh A., Trends Genet. 17(8), 2001
PMID: 11485798
Skovgaard M, Jensen LJ, Brunak S, Ussery D, Krogh A., Trends Genet. 17(8), 2001
PMID: 11485798
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Tatusov RL, Galperin MY, Natale DA, Koonin EV., Nucleic Acids Res. 28(1), 2000
PMID: 10592175
Tatusov RL, Galperin MY, Natale DA, Koonin EV., Nucleic Acids Res. 28(1), 2000
PMID: 10592175
ExoR is genetically coupled to the ExoS-ChvI two-component system and located in the periplasm of Sinorhizobium meliloti.
Wells DH, Chen EJ, Fisher RF, Long SR., Mol. Microbiol. 64(3), 2007
PMID: 17462014
Wells DH, Chen EJ, Fisher RF, Long SR., Mol. Microbiol. 64(3), 2007
PMID: 17462014
AUTHOR UNKNOWN, 2005
Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate.
Zahran HH., Microbiol. Mol. Biol. Rev. 63(4), 1999
PMID: 10585971
Zahran HH., Microbiol. Mol. Biol. Rev. 63(4), 1999
PMID: 10585971
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