Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing

Bolzan de Campos S, Youn J-W, Farina R, Jaenicke S, Jünemann S, Szczepanowski R, Beneduzi A, Vargas LK, Goesmann A, Wendisch VF, Passagilia L (2013)
Microbial Ecology 65(3): 593-601.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Bolzan de Campos, Samanta; Youn, Jung-WonUniBi; Farina, Roberto; Jaenicke, SebastianUniBi; Jünemann, SebastianUniBi; Szczepanowski, RafaelUniBi; Beneduzi, Anelise; Vargas, Luciano K.; Goesmann, AlexanderUniBi ; Wendisch, Volker F.UniBi ; Passagilia, Luciane
Einrichtung
Fakultät für Biologie > Genetik der Prokaryoten
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe V. Wendisch
Technische Fakultät > Computational Genomics
Erscheinungsjahr
2013
Zeitschriftentitel
Microbial Ecology
Band
65
Ausgabe
3
Seite(n)
593-601
ISSN
0095-3628
eISSN
1432-184X
Page URI
https://pub.uni-bielefeld.de/record/2529309

Zitieren

Bolzan de Campos S, Youn J-W, Farina R, et al. Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology. 2013;65(3):593-601.
Bolzan de Campos, S., Youn, J. - W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., et al. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. doi:10.1007/s00248-012-0132-9
Bolzan de Campos, Samanta, Youn, Jung-Won, Farina, Roberto, Jaenicke, Sebastian, Jünemann, Sebastian, Szczepanowski, Rafael, Beneduzi, Anelise, et al. 2013. “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing”. Microbial Ecology 65 (3): 593-601.
Bolzan de Campos, S., Youn, J. - W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L. K., Goesmann, A., Wendisch, V. F., et al. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology 65, 593-601.
Bolzan de Campos, S., et al., 2013. Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), p 593-601.
S. Bolzan de Campos, et al., “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, vol. 65, 2013, pp. 593-601.
Bolzan de Campos, S., Youn, J.-W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., Vargas, L.K., Goesmann, A., Wendisch, V.F., Passagilia, L.: Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology. 65, 593-601 (2013).
Bolzan de Campos, Samanta, Youn, Jung-Won, Farina, Roberto, Jaenicke, Sebastian, Jünemann, Sebastian, Szczepanowski, Rafael, Beneduzi, Anelise, Vargas, Luciano K., Goesmann, Alexander, Wendisch, Volker F., and Passagilia, Luciane. “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing”. Microbial Ecology 65.3 (2013): 593-601.

11 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

NBS-Encoding Genes in Brassica napus Evolved Rapidly After Allopolyploidization and Co-localize With Known Disease Resistance Loci.
Fu Y, Zhang Y, Mason AS, Lin B, Zhang D, Yu H, Fu D., Front Plant Sci 10(), 2019
PMID: 30761170
Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae.
Lebreton L, Guillerm-Erckelboudt AY, Gazengel K, Linglin J, Ourry M, Glory P, Sarniguet A, Daval S, Manzanares-Dauleux MJ, Mougel C., PLoS One 14(2), 2019
PMID: 30802246
Metagenomic analysis of microbial community and function involved in cd-contaminated soil.
Feng G, Xie T, Wang X, Bai J, Tang L, Zhao H, Wei W, Wang M, Zhao Y., BMC Microbiol 18(1), 2018
PMID: 29439665
Canola Root-Associated Microbiomes in the Canadian Prairies.
Lay CY, Bell TH, Hamel C, Harker KN, Mohr R, Greer CW, Yergeau É, St-Arnaud M., Front Microbiol 9(), 2018
PMID: 29937756
Rhizosphere Bacterial Communities Differ According to Fertilizer Regimes and Cabbage (Brassica oleracea var. capitata L.) Harvest Time, but Not Aphid Herbivory.
O'Brien FJM, Dumont MG, Webb JS, Poppy GM., Front Microbiol 9(), 2018
PMID: 30083141
Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.
Vicente JG, Rothwell S, Holub EB, Studholme DJ., Int J Syst Evol Microbiol 67(9), 2017
PMID: 28840805
The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens.
Rybakova D, Mancinelli R, Wikström M, Birch-Jensen AS, Postma J, Ehlers RU, Goertz S, Berg G., Microbiome 5(1), 2017
PMID: 28859671
Characterization of bacterial communities associated with Brassica napus L. growing on a Zn-contaminated soil and their effects on root growth.
Montalbán B, Croes S, Weyens N, Lobo MC, Pérez-Sanz A, Vangronsveld J., Int J Phytoremediation 18(10), 2016
PMID: 27159736
Recent progress in the use of 'omics technologies in brassicaceous vegetables.
Witzel K, Neugart S, Ruppel S, Schreiner M, Wiesner M, Baldermann S., Front Plant Sci 6(), 2015
PMID: 25926843
Complete genome sequence of Paenibacillus riograndensis SBR5(T), a Gram-positive diazotrophic rhizobacterium.
Brito LF, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia LM, Wendisch VF., J Biotechnol 207(), 2015
PMID: 25959170
The antimicrobial compound xantholysin defines a new group of Pseudomonas cyclic lipopeptides.
Li W, Rokni-Zadeh H, De Vleeschouwer M, Ghequire MG, Sinnaeve D, Xie GL, Rozenski J, Madder A, Martins JC, De Mot R., PLoS One 8(5), 2013
PMID: 23690965

43 References

Daten bereitgestellt von Europe PubMed Central.


JM, Curr Microbiol 20(), 1990
Pyrosequencing enumerates and contrasts soil microbial diversity.
Roesch LF, Fulthorpe RR, Riva A, Casella G, Hadwin AK, Kent AD, Daroub SH, Camargo FA, Farmerie WG, Triplett EW., ISME J 1(4), 2007
PMID: 18043639
High diversity in DNA of soil bacteria.
Torsvik V, Goksoyr J, Daae FL., Appl. Environ. Microbiol. 56(3), 1990
PMID: 2317046
Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns
Duineveld BM, Rosado AS, van Elsas JD , van Veen JA ., Appl. Environ. Microbiol. 64(12), 1998
PMID: 9835588

A, 1997

W, 1997
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
Amann RI, Ludwig W, Schleifer KH., Microbiol. Rev. 59(1), 1995
PMID: 7535888
Bacterial phylogeny based on comparative sequence analysis.
Ludwig W, Strunk O, Klugbauer S, Klugbauer N, Weizenegger M, Neumaier J, Bachleitner M, Schleifer KH., Electrophoresis 19(4), 1998
PMID: 9588802
The uncultured microbial majority.
Rappe MS, Giovannoni SJ., Annu. Rev. Microbiol. 57(), 2003
PMID: 14527284
Microbial diversity in the deep sea and the underexplored "rare biosphere".
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ., Proc. Natl. Acad. Sci. U.S.A. 103(32), 2006
PMID: 16880384
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.
Dethlefsen L, Huse S, Sogin ML, Relman DA., PLoS Biol. 6(11), 2008
PMID: 19018661

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L.)
Germida JJ, Siciliano SD, Freitas JRd, Seib AM., FEMS Microbiol. Ecol. 26(1), 1998
PMID: IND21960294

JW, Isi Atl Sci-Anim Pl Sci 1(), 1988
Enzymatic activity in root exudates of Dahurian wild rye (Elymus dauricus) that degrades 2-chlorobenzoic acid.
Siciliano SD, Goldie H, Germida JJ., J. Agric. Food Chem. 46(1), 1998
PMID: IND21642377
Seasonal changes in the rhizosphere microbial communities associated with field-grown genetically modified canola (Brassica napus).
Dunfield KE, Germida JJ., Appl. Environ. Microbiol. 69(12), 2003
PMID: 14660380
Diversity of plant growth-promoting rhizobacteria communities associated with the stages of canola growth
Farina R, Beneduzi A, Ambrosini A, de Campos SB, Lisboa BB, Wendisch V, Vargas LK, Passaglia LMP., Agric., Ecosyst. Environ., Appl. Soil Ecol. 55(), 2012
PMID: IND44682537
Occurrence and distribution of nitrogen fixing bacterial community associated with oat (Avena sativa) assessed by molecular and microbiological techniques
Soares RA, Roesch LFW, Zanatta G, Camargo FAdeO, Passaglia LMP., Agric., Ecosyst. Environ., Appl. Soil Ecol. 33(3), 2006
PMID: IND43825619
Direct ribosome isolation from soil to extract bacterial rRNA for community analysis.
Felske A, Engelen B, Nubel U, Backhaus H., Appl. Environ. Microbiol. 62(11), 1996
PMID: 8900007
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.
Brosius J, Palmer ML, Kennedy PJ, Noller HF., Proc. Natl. Acad. Sci. U.S.A. 75(10), 1978
PMID: 368799
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.
Sun Y, Cai Y, Liu L, Yu F, Farrell ML, McKendree W, Farmerie W., Nucleic Acids Res. 37(10), 2009
PMID: 19417062
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
A uniform decimal code for growth stages of crops and weeds.
Lancashire PD, Bleiholder H, Boom Tvanden, Langeluddeke P, Stauss R, Weber E, Witzenberger A., Ann. Appl. Biol. 119(3), 1991
PMID: IND92024777
Synthesis of phytohormones by plant-associated bacteria.
Costacurta A, Vanderleyden J., Crit. Rev. Microbiol. 21(1), 1995
PMID: 7576148
Screening plant growth-promoting rhizobacteria for improving growth and yield of wheat.
Khalid A, Arshad M, Zahir ZA., J. Appl. Microbiol. 96(3), 2004
PMID: 14962127
Genetic and phenotypic diversity of plant-growth-promoting bacilli isolated from wheat fields in southern Brazil.
Beneduzi A, Peres D, da Costa PB, Bodanese Zanettini MH, Passaglia LM., Res. Microbiol. 159(4), 2008
PMID: 18490146
Evaluation of genetic diversity and plant growth promoting activities of nitrogen-fixing bacilli isolated from rice fields in South Brazil
Beneduzi Anelise, Peres Daiane, Vargas LucianoK, Bodanese-Zanettini MariaHelena, Passaglia LucianeMariaP., Agric., Ecosyst. Environ., Appl. Soil Ecol. 39(3), 2008
PMID: IND44050237
Production of mutants with high cold tolerance in spring canola (Brassica napus)
McClinchey ScottL, Kott LaimaS., Euphytica 162(1), 2008
PMID: IND44065350

G, Ciencia Rural 41(), 2011
Biodiversity of a Burkholderia cepacia population isolated from the maize rhizosphere at different plant growth stages.
Di Cello F, Bevivino A, Chiarini L, Fani R, Paffetti D, Tabacchioni S, Dalmastri C., Appl. Environ. Microbiol. 63(11), 1997
PMID: 9361434
Selective influence of plant species on microbial diversity in the rhizosphere.
Grayston SJ, Wang S, Campbell CD, Edwards AC., Soil Biol. Biochem. 30(3), 1998
PMID: IND21807241
Phylogenetic Analysis of Microbial Diversity in the Rhizoplane of Oilseed Rape (Brassica napus cv. Westar) Employing Cultivation-Dependent and Cultivation-Independent Approaches.
Kaiser O, Puhler A, Selbitschka W., Microb. Ecol. 42(2), 2001
PMID: 12024277
Soil and plant specific effects on bacterial community composition in the rhizosphere.
Marschner P, Yang CH, Lieberei R, Crowley DE., Soil Biol. Biochem. 33(11), 2001
PMID: IND23271541
Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms.
Kowalchuk GA, Buma DS, de Boer W, Klinkhamer PG, van Veen JA., Antonie Van Leeuwenhoek 81(1-4), 2002
PMID: 12448746

RJ, Plant Soil 333(), 2010
Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed.
Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G., Appl. Environ. Microbiol. 67(10), 2001
PMID: 11571180

HJ, Can J Microbiol 35(), 1989
Bacterial characteristics important to rhizosphere competence.
Hozore E, Alexander M., Soil Biol. Biochem. 23(8), 1991
PMID: IND92021428

JW, 1993
The Gram-positive side of plant-microbe interactions.
Francis I, Holsters M, Vereecke D., Environ. Microbiol. 12(1), 2009
PMID: 19624707
Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots.
Marilley L, Aragno M., Agric., Ecosyst. Environ., Appl. Soil Ecol. 13(2), 1999
PMID: IND22049727
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 23064947
PubMed | Europe PMC

Suchen in

Google Scholar