A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective

Rendulic S, Jagtap P, Rosinus A, Eppinger M, Baar C, Lanz C, Keller H, Lambert C, Evans KJ, Goesmann A, Meyer F, et al. (2004)
SCIENCE 303(5658): 689-692.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Rendulic, S; Jagtap, P; Rosinus, A; Eppinger, M; Baar, C; Lanz, C; Keller, H; Lambert, C; Evans, KJ; Goesmann, AlexanderUniBi ; Meyer, F; Sockett, RE
Alle
Einrichtung
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Abstract / Bemerkung
Predatory bacteria remain molecularly enigmatic, despite their presence in many microbial communities. Here we report the complete genome of Bdellovibrio bacteriovorus HD100, a predatory Gram-negative bacterium that invades and consumes other Gram-negative bacteria. Its surprisingly large genome shows no evidence of recent gene transfer from its prey. A plethora of paralogous gene families coding for enzymes, such as hydrolases and transporters, are used throughout the life cycle of B. bacteriovorus for prey entry, prey killing, and the uptake of complex molecules.
Erscheinungsjahr
2004
Zeitschriftentitel
SCIENCE
Band
303
Ausgabe
5658
Seite(n)
689-692
ISSN
0036-8075
eISSN
1095-9203
Page URI
https://pub.uni-bielefeld.de/record/1608953

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Rendulic S, Jagtap P, Rosinus A, et al. A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE. 2004;303(5658):689-692.
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE, 303(5658), 689-692. https://doi.org/10.1126/science.1093027
Rendulic, S, Jagtap, P, Rosinus, A, Eppinger, M, Baar, C, Lanz, C, Keller, H, et al. 2004. “A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective”. SCIENCE 303 (5658): 689-692.
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., Lambert, C., Evans, K. J., Goesmann, A., et al. (2004). A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE 303, 689-692.
Rendulic, S., et al., 2004. A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE, 303(5658), p 689-692.
S. Rendulic, et al., “A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective”, SCIENCE, vol. 303, 2004, pp. 689-692.
Rendulic, S., Jagtap, P., Rosinus, A., Eppinger, M., Baar, C., Lanz, C., Keller, H., Lambert, C., Evans, K.J., Goesmann, A., Meyer, F., Sockett, R.E., Schuster, S.C.: A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective. SCIENCE. 303, 689-692 (2004).
Rendulic, S, Jagtap, P, Rosinus, A, Eppinger, M, Baar, C, Lanz, C, Keller, H, Lambert, C, Evans, KJ, Goesmann, Alexander, Meyer, F, Sockett, RE, and Schuster, SC. “A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective”. SCIENCE 303.5658 (2004): 689-692.

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PMID: 21990613
Control of blackleg and tuber soft rot of potato caused by Pectobacterium and Dickeya species: a review
Czajkowski R, Pérombelon MCM, van Veen JA, van der Wolf JM., Plant Pathol 60(6), 2011
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Manipulating each MreB of Bdellovibrio bacteriovorus gives diverse morphological and predatory phenotypes.
Fenton AK, Lambert C, Wagstaff PC, Sockett RE., J Bacteriol 192(5), 2010
PMID: 20023029
The first bite--profiling the predatosome in the bacterial pathogen Bdellovibrio.
Lambert C, Chang CY, Capeness MJ, Sockett RE., PLoS One 5(1), 2010
PMID: 20062540
Characterization of type IV pili in the life cycle of the predator bacterium Bdellovibrio.
Mahmoud KK, Koval SF., Microbiology 156(pt 4), 2010
PMID: 20056705
Chemical structure of Bacteriovorax stolpii lipid A.
Beck S, Müller FD, Strauch E, Brecker L, Linscheid MW., Lipids 45(2), 2010
PMID: 20094810
Sensing of environmental signals: classification of chemoreceptors according to the size of their ligand binding regions.
Lacal J, García-Fontana C, Muñoz-Martínez F, Ramos JL, Krell T., Environ Microbiol 12(11), 2010
PMID: 20738376
Comparative analysis of myxococcus predation on soil bacteria.
Morgan AD, MacLean RC, Hillesland KL, Velicer GJ., Appl Environ Microbiol 76(20), 2010
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Shadowing the actions of a predator: backlit fluorescent microscopy reveals synchronous nonbinary septation of predatory Bdellovibrio inside prey and exit through discrete bdelloplast pores.
Fenton AK, Kanna M, Woods RD, Aizawa SI, Sockett RE., J Bacteriol 192(24), 2010
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A coiled-coil-repeat protein 'Ccrp' in Bdellovibrio bacteriovorus prevents cellular indentation, but is not essential for vibroid cell morphology.
Fenton AK, Hobley L, Butan C, Subramaniam S, Sockett RE., FEMS Microbiol Lett 313(2), 2010
PMID: 20977494
Mutation detection with next-generation resequencing through a mediator genome.
Wurtzel O, Dori-Bachash M, Pietrokovski S, Jurkevitch E, Sorek R., PLoS One 5(12), 2010
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Ecological conditions affect evolutionary trajectory in a predator-prey system.
Gallet R, Tully T, Evans ME., Evolution 63(3), 2009
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Visualizing cells at the nanoscale.
Leis A, Rockel B, Andrees L, Baumeister W., Trends Biochem Sci 34(2), 2009
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Predatory lifestyle of Bdellovibrio bacteriovorus.
Sockett RE., Annu Rev Microbiol 63(), 2009
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Bacterial intein-like domains of predatory bacteria: a new domain type characterized in Bdellovibrio bacteriovorus.
Dori-Bachash M, Dassa B, Peleg O, Pineiro SA, Jurkevitch E, Pietrokovski S., Funct Integr Genomics 9(2), 2009
PMID: 19153786
Biofilm formation of Bdellovibrio bacteriovorus host-independent derivatives.
Medina AA, Kadouri DE., Res Microbiol 160(3), 2009
PMID: 19223013
Widespread occurrence of an intranuclear bacterial parasite in vent and seep bathymodiolin mussels.
Zielinski FU, Pernthaler A, Duperron S, Raggi L, Giere O, Borowski C, Dubilier N., Environ Microbiol 11(5), 2009
PMID: 19226299
Structure and biological function of the RNA pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus.
Messing SA, Gabelli SB, Liu Q, Celesnik H, Belasco JG, Piñeiro SA, Amzel LM., Structure 17(3), 2009
PMID: 19278661
Bioinformatic comparison of bacterial secretomes.
Song C, Kumar A, Saleh M., Genomics Proteomics Bioinformatics 7(1-2), 2009
PMID: 19591790
Stratified bacterial community in the bladder of the medicinal leech, Hirudo verbana.
Kikuchi Y, Bomar L, Graf J., Environ Microbiol 11(10), 2009
PMID: 19678832
Roles of multiple flagellins in flagellar formation and flagellar growth post bdelloplast lysis in Bdellovibrio bacteriovorus.
Iida Y, Hobley L, Lambert C, Fenton AK, Sockett RE, Aizawa S., J Mol Biol 394(5), 2009
PMID: 19819245
Symbiotic relationship between Microbacterium sp. SK0812 and Candida tropicalis SK090404.
Kang SW, Jeon BY, Hwang TS, Park DH., J Microbiol 47(6), 2009
PMID: 20127466
Microbial mito-pathogens: fact or fiction?
Bongaerts GP, van den Heuvel LP., Med Hypotheses 70(5), 2008
PMID: 17826002
Bacteriovorax stolpii proliferation and predation without sphingophosphonolipids.
Kaneshiro ES, Hunt SM, Watanabe Y., Biochem Biophys Res Commun 367(1), 2008
PMID: 18086555
Three-dimensional imaging of the highly bent architecture of Bdellovibrio bacteriovorus by using cryo-electron tomography.
Borgnia MJ, Subramaniam S, Milne JL., J Bacteriol 190(7), 2008
PMID: 18203829
Development of a novel system for isolating genes involved in predator-prey interactions using host independent derivatives of Bdellovibrio bacteriovorus 109J.
Medina AA, Shanks RM, Kadouri DE., BMC Microbiol 8(), 2008
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Rapid isolation of host-independent Bdellovibrio bacteriovorus.
Ferguson MA, Schmitt JL, Sindhurakar AR, Volle CB, Nuñez ME, Spain EM., J Microbiol Methods 73(3), 2008
PMID: 18410974
Lysis of Vibrios by Bdellovibrio-and like organisms (BALOs) isolated from marine environment
Cai J, Zhao J, Wang Z, Zou D, Sun L., Journal of food safety. 28(2), 2008
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Laboratory maintenance of Bdellovibrio.
Lambert C, Sockett RE., Curr Protoc Microbiol Chapter 7(), 2008
PMID: 18770540
Genetic analysis of spirochete flagellin proteins and their involvement in motility, filament assembly, and flagellar morphology.
Li C, Wolgemuth CW, Marko M, Morgan DG, Charon NW., J Bacteriol 190(16), 2008
PMID: 18556797
Isolation of predation-deficient mutants of Bdellovibrio bacteriovorus by using transposon mutagenesis.
Tudor JJ, Davis JJ, Panichella M, Zwolak A., Appl Environ Microbiol 74(17), 2008
PMID: 18621871
The major glycerophospholipids of the predatory and parasitic bacterium Bdellovibrio bacteriovorus HID5.
Nguyen NA, Sallans L, Kaneshiro ES., Lipids 43(11), 2008
PMID: 18818966
Cellulose biosynthesis by the beta-proteobacterium, Chromobacterium violaceum.
Recouvreux DO, Carminatti CA, Pitlovanciv AK, Rambo CR, Porto LM, Antônio RV., Curr Microbiol 57(5), 2008
PMID: 18820969
Proteome-based comparative analyses of growth stages reveal new cell cycle-dependent functions in the predatory bacterium Bdellovibrio bacteriovorus.
Dori-Bachash M, Dassa B, Pietrokovski S, Jurkevitch E., Appl Environ Microbiol 74(23), 2008
PMID: 18836011
Identification of Bdellovibrio bacteriovorus HD100 Bd0714 as a Nudix dGTPase.
Steyert SR, Messing SA, Amzel LM, Gabelli SB, Piñeiro SA., J Bacteriol 190(24), 2008
PMID: 18931106
Genome-wide survey of prokaryotic serine proteases: analysis of distribution and domain architectures of five serine protease families in prokaryotes.
Tripathi LP, Sowdhamini R., BMC Genomics 9(), 2008
PMID: 19019219
Evaluating hypotheses for the origin of eukaryotes.
Poole AM, Penny D., Bioessays 29(1), 2007
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MEGAN analysis of metagenomic data.
Huson DH, Auch AF, Qi J, Schuster SC., Genome Res 17(3), 2007
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Predatory mechanisms of Bdellovibrio and like organisms.
Strauch E, Schwudke D, Linscheid M., Future Microbiol 2(1), 2007
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Predation by Bdellovibrio bacteriovorus HD100 requires type IV pili.
Evans KJ, Lambert C, Sockett RE., J Bacteriol 189(13), 2007
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OSLay: optimal syntenic layout of unfinished assemblies.
Richter DC, Schuster SC, Huson DH., Bioinformatics 23(13), 2007
PMID: 17463020
Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics.
Donadio S, Monciardini P, Sosio M., Nat Prod Rep 24(5), 2007
PMID: 17898898
Predation and disturbance interact to shape prey species diversity.
Gallet R, Alizon S, Comte PA, Gutierrez A, Depaulis F, van Baalen M, Michel E, Müller-Graf CD., Am Nat 170(1), 2007
PMID: 17853998
The chemistry of gliding bacteria.
Nett M, König GM., Nat Prod Rep 24(6), 2007
PMID: 18033578
Molecular characterization of membrane-associated soluble serine palmitoyltransferases from Sphingobacterium multivorum and Bdellovibrio stolpii.
Ikushiro H, Islam MM, Tojo H, Hayashi H., J Bacteriol 189(15), 2007
PMID: 17557831
Development of a novel genetic system to create markerless deletion mutants of Bdellovibrio bacteriovorus.
Steyert SR, Pineiro SA., Appl Environ Microbiol 73(15), 2007
PMID: 17557848
Ecology: death and destruction determine diversity.
Brockhurst MA., Curr Biol 17(13), 2007
PMID: 17610832
Comprehensive analysis of transport proteins encoded within the genome of Bdellovibrio bacteriovorus.
Barabote RD, Rendulic S, Schuster SC, Saier MH., Genomics 90(4), 2007
PMID: 17706914
Myxococcus xanthus twin-arginine translocation system is important for growth and development.
Kimura Y, Saiga H, Hamanaka H, Matoba H., Arch Microbiol 184(6), 2006
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Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus.
Gophna U, Charlebois RL, Doolittle WF., Trends Microbiol 14(2), 2006
PMID: 16413191
Differential predation by Bdellovibrio bacteriovorus 109J.
Rogosky AM, Moak PL, Emmert EA., Curr Microbiol 52(2), 2006
PMID: 16450066
Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus.
Lambert C, Evans KJ, Till R, Hobley L, Capeness M, Rendulic S, Schuster SC, Aizawa S, Sockett RE., Mol Microbiol 60(2), 2006
PMID: 16573680
Selective forces for the origin of the eukaryotic nucleus.
López-García P, Moreira D., Bioessays 28(5), 2006
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Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.
Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW., Funct Integr Genomics 6(3), 2006
PMID: 16773396
Comparison of bacterial communities in New England Sphagnum bogs using terminal restriction fragment length polymorphism (T-RFLP).
Morales SE, Mouser PJ, Ward N, Hudman SP, Gotelli NJ, Ross DS, Lewis TA., Microb Ecol 52(1), 2006
PMID: 16729225
Persistent biases in the amino acid composition of prokaryotic proteins.
Pascal G, Médigue C, Danchin A., Bioessays 28(7), 2006
PMID: 16850406
Distinguishing features of delta-proteobacterial genomes.
Karlin S, Brocchieri L, Mrázek J, Kaiser D., Proc Natl Acad Sci U S A 103(30), 2006
PMID: 16844781
Bdellovibrio predation in the presence of decoys: Three-way bacterial interactions revealed by mathematical and experimental analyses.
Hobley L, King JR, Sockett RE., Appl Environ Microbiol 72(10), 2006
PMID: 17021228
Evolution of sensory complexity recorded in a myxobacterial genome.
Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, Mackenzie C, Madupu R, Miller N, Shvartsbeyn A, Sullivan SA, Vaudin M, Wiegand R, Kaplan HB., Proc Natl Acad Sci U S A 103(41), 2006
PMID: 17015832
Bdellovibrio: growth and development during the predatory cycle.
Lambert C, Morehouse KA, Chang CY, Sockett RE., Curr Opin Microbiol 9(6), 2006
PMID: 17056298
Response of Bdellovibrio and like organisms (BALOs) to the migration of naturally occurring bacteria to chemoattractants.
Chauhan A, Williams HN., Curr Microbiol 53(6), 2006
PMID: 17115104
A new alpha-proteobacterial clade of Bdellovibrio-like predators: implications for the mitochondrial endosymbiotic theory.
Davidov Y, Huchon D, Koval SF, Jurkevitch E., Environ Microbiol 8(12), 2006
PMID: 17107559
Fate of predator and prey proteins during growth of Bdellovibrio bacteriovorus on Escherichia coli and Pseudomonas syringae prey.
Barel G, Sirota A, Volpin H, Jurkevitch E., J Bacteriol 187(1), 2005
PMID: 15601717
Alternatives to binary fission in bacteria.
Angert ER., Nat Rev Microbiol 3(3), 2005
PMID: 15738949
ARABIDOPSIS CRINKLY4 function, internalization, and turnover are dependent on the extracellular crinkly repeat domain.
Gifford ML, Robertson FC, Soares DC, Ingram GC., Plant Cell 17(4), 2005
PMID: 15772284
An adenylyl cyclase, CyaB, acts as an osmosensor in Myxococcus xanthus.
Kimura Y, Ohtani M, Takegawa K., J Bacteriol 187(10), 2005
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Predation, death, and survival in a biofilm: Bdellovibrio investigated by atomic force microscopy.
Núñez ME, Martin MO, Chan PH, Spain EM., Colloids Surf B Biointerfaces 42(3-4), 2005
PMID: 15893228
Prokaryotic K(+) channels: from crystal structures to diversity.
Kuo MM, Haynes WJ, Loukin SH, Kung C, Saimi Y., FEMS Microbiol Rev 29(5), 2005
PMID: 16026885
Evolution of selenium utilization traits.
Romero H, Zhang Y, Gladyshev VN, Salinas G., Genome Biol 6(8), 2005
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Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus.
Campoy S, Salvador N, Cortés P, Erill I, Barbé J., J Bacteriol 187(15), 2005
PMID: 16030231
Transcriptional activity of the host-interaction locus and a putative pilin gene of Bdellovibrio bacteriovorus in the predatory life cycle.
Schwudke D, Bernhardt A, Beck S, Madela K, Linscheid MW, Appel B, Strauch E., Curr Microbiol 51(5), 2005
PMID: 16195835
How genomics has affected the concept of microbiology.
Ward N, Fraser CM., Curr Opin Microbiol 8(5), 2005
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Type II secretion: a protein secretion system for all seasons.
Cianciotto NP., Trends Microbiol 13(12), 2005
PMID: 16216510
Bugs N the 'hood.
Rasko DA, Fraser CM., Trends Microbiol 12(4), 2004
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All bugs, big and small.
Galperin MY., Environ Microbiol 6(5), 2004
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Type IV pilus structure and bacterial pathogenicity.
Craig L, Pique ME, Tainer JA., Nat Rev Microbiol 2(5), 2004
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Pharmacogenomic strategies against resistance development in microbial infections.
Ziebuhr W, Xiao K, Coulibaly B, Schwarz R, Dandekar T., Pharmacogenomics 5(4), 2004
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The role of bacterial antizyme: From an inhibitory protein to AtoC transcriptional regulator.
Lioliou EE, Kyriakidis DA., Microb Cell Fact 3(1), 2004
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Bdellovibrio as therapeutic agents: a predatory renaissance?
Sockett RE, Lambert C., Nat Rev Microbiol 2(8), 2004
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Finding my enemy's enemies.
Moore A., EMBO Rep 5(8), 2004
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Metabolic interdependence of obligate intracellular bacteria and their insect hosts.
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