The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis

Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)
FEMS Microbiology Letters 323(1): 52-60.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Pothier, Joël F.; Vorhölter, Frank-JörgUniBi; Blom, JochenUniBi; Goesmann, AlexanderUniBi ; Pühler, AlfredUniBi ; Smits, TH; Duffy, B
Einrichtung
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Biologie > Proteom- und Metabolomforschung
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Technische Fakultät > Computational Genomics
Abstract / Bemerkung
The complete DNA sequence of the 41 102-bp plasmid pXap41 from the invasive plant pathogen Xanthomonas arboricola pv. pruni CFBP 5530 was determined and its 44 coding regions were annotated. Comparative analysis with 15 Xanthomonas plasmids and 19 complete genomes revealed that nearly one-fourth of this plasmid has high sequence identity to plasmid pXAC64 and an 8.8-kb chromosomal region of Xanthomonas axonopodis pv. citri strain 306 carrying genes that encode type III effectors and helper proteins. The presence of pXap41 in all X. arboricola pv. pruni genotypes was confirmed for eight strains by plasmid profiling and for 35 X. arboricola pv. pruni isolates with a new plasmid multiplex PCR assay. This plasmid was not detected in any other X. arboricola pathovars (n=12), indicating the potential for the application of the pXap41 PCR method as a pathovar-level detection and identification tool.
Erscheinungsjahr
2011
Zeitschriftentitel
FEMS Microbiology Letters
Band
323
Ausgabe
1
Seite(n)
52-60
ISSN
0378-1097
Page URI
https://pub.uni-bielefeld.de/record/2375634

Zitieren

Pothier JF, Vorhölter F-J, Blom J, et al. The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 2011;323(1):52-60.
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., & Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), 52-60. https://doi.org/10.1111/j.1574-6968.2011.02352.x
Pothier, Joël F., Vorhölter, Frank-Jörg, Blom, Jochen, Goesmann, Alexander, Pühler, Alfred, Smits, TH, and Duffy, B. 2011. “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”. FEMS Microbiology Letters 323 (1): 52-60.
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.
Pothier, J.F., et al., 2011. The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), p 52-60.
J.F. Pothier, et al., “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, vol. 323, 2011, pp. 52-60.
Pothier, J.F., Vorhölter, F.-J., Blom, J., Goesmann, A., Pühler, A., Smits, T.H., Duffy, B.: The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 323, 52-60 (2011).
Pothier, Joël F., Vorhölter, Frank-Jörg, Blom, Jochen, Goesmann, Alexander, Pühler, Alfred, Smits, TH, and Duffy, B. “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”. FEMS Microbiology Letters 323.1 (2011): 52-60.

15 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli.
Roach R, Mann R, Gambley CG, Chapman T, Shivas RG, Rodoni B., BMC Genomics 20(1), 2019
PMID: 31014247
Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants.
Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J., PLoS One 14(7), 2019
PMID: 31318915
Xanthomonas arboricola pv. pruni, causal agent of bacterial spot of stone fruits and almond: its genomic and phenotypic characteristics in the X. arboricola species context.
Garita-Cambronero J, Palacio-Bielsa A, Cubero J., Mol Plant Pathol 19(9), 2018
PMID: 29575564
Transposons and pathogenicity in Xanthomonas: acquisition of murein lytic transglycosylases by TnXax1 enhances Xanthomonas citri subsp. citri 306 virulence and fitness.
Oliveira ACP, Ferreira RM, Ferro MIT, Ferro JA, Chandler M, Varani AM., PeerJ 6(), 2018
PMID: 30588403
Pan-Genomic Analysis Permits Differentiation of Virulent and Non-virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors.
Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J., Front Microbiol 8(), 2017
PMID: 28450852
Lateral flow immunoassay for on-site detection of Xanthomonas arboricola pv. pruni in symptomatic field samples.
López-Soriano P, Noguera P, Gorris MT, Puchades R, Maquieira Á, Marco-Noales E, López MM., PLoS One 12(4), 2017
PMID: 28448536
Complete sequence and comparative genomic analysis of eight native Pseudomonas syringae plasmids belonging to the pPT23A family.
Gutiérrez-Barranquero JA, Cazorla FM, de Vicente A, Sundin GW., BMC Genomics 18(1), 2017
PMID: 28486968
Designing potent antimicrobial peptides by disulphide linked dimerization and N-terminal lipidation to increase antimicrobial activity and membrane perturbation: Structural insights into lipopolysaccharide binding.
Datta A, Kundu P, Bhunia A., J Colloid Interface Sci 461(), 2016
PMID: 26407061
Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain.
Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J., Stand Genomic Sci 11(), 2016
PMID: 26823958
Comparative Genomic and Phenotypic Characterization of Pathogenic and Non-Pathogenic Strains of Xanthomonas arboricola Reveals Insights into the Infection Process of Bacterial Spot Disease of Stone Fruits.
Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J., PLoS One 11(8), 2016
PMID: 27571391
A TALE of transposition: Tn3-like transposons play a major role in the spread of pathogenicity determinants of Xanthomonas citri and other xanthomonads.
Ferreira RM, de Oliveira AC, Moreira LM, Belasque J, Gourbeyre E, Siguier P, Ferro MI, Ferro JA, Chandler M, Varani AM., MBio 6(1), 2015
PMID: 25691597
Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing.
Fischer-Le Saux M, Bonneau S, Essakhi S, Manceau C, Jacques MA., Appl Environ Microbiol 81(14), 2015
PMID: 25934623
Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola.
Niu XN, Wei ZQ, Zou HF, Xie GG, Wu F, Li KJ, Jiang W, Tang JL, He YQ., BMC Microbiol 15(), 2015
PMID: 26498126
Development of multilocus variable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars.
Cesbron S, Pothier J, Gironde S, Jacques MA, Manceau C., J Microbiol Methods 100(), 2014
PMID: 24631558
Genomics‐informed design of loop‐mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level
Bühlmann A, Pothier JF, Tomlinson JA, Frey JE, Boonham N, Smits THM, Duffy B., Plant Pathol 62(2), 2013
PMID: IND500644012

48 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
EDGAR
Blom, a software framework for the comparative analysis of prokaryotic genomes 10(), 2009
Genetic and structural characterization of the avirulence gene avrBs3 from Xanthomonas campestris pv. vesicatoria.
Bonas U, Stall RE, Staskawicz B., Mol. Gen. Genet. 218(1), 1989
PMID: 2550761
Structure and origin of Xanthomonas arboricola pv. pruni populations causing bacterial spot of stone fruit trees in western Europe.
Boudon S, Manceau C, Notteghem JL., Phytopathology 95(9), 2005
PMID: IND43738682
Shaping bacterial genomes with integrative and conjugative elements.
Burrus V, Waldor MK., Res. Microbiol. 155(5), 2004
PMID: 15207870
Plasmids and their role in the evolution of plant pathogenic bacteria
Coplin, Annu Rev Phytopathol 27(), 1989
Virulence plasmid harbored by uropathogenic Escherichia coli functions in acute stages of pathogenesis.
Cusumano CK, Hung CS, Chen SL, Hultgren SJ., Infect. Immun. 78(4), 2010
PMID: 20123719
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP., Nature 417(6887), 2002
PMID: 12024217
At least six avirulence genes are clustered on a 90-kilobase plasmid in Xanthomonas campestris pv. malvacearum
De, Mol Plant Microbe In 4(), 1991
In planta horizontal transfer of a major pathogenicity effector gene.
El Yacoubi B, Brunings AM, Yuan Q, Shankar S, Gabriel DW., Appl. Environ. Microbiol. 73(5), 2007
PMID: 17220258
Plasmid-borne determinants of pigmentation and thiamine prototrophy in Erwinia herbicola.
Gantotti BV, Beer SV., J. Bacteriol. 151(3), 1982
PMID: 7107564

Hopkins, 2004
Rapid procedure for detection and isolation of large and small plasmids.
Kado CI, Liu ST., J. Bacteriol. 145(3), 1981
PMID: 7009583
Comparative analysis of three indigenous plasmids from Xanthomonas axonopodis pv. glycines.
Kim JG, Choi S, Oh J, Moon JS, Hwang I., Plasmid 56(2), 2006
PMID: 16697042
New genes of Xanthomonas citri subsp. citri involved in pathogenesis and adaptation revealed by a transposon-based mutant library.
Laia ML, Moreira LM, Dezajacomo J, Brigati JB, Ferreira CB, Ferro MI, Silva AC, Ferro JA, Oliveira JC., BMC Microbiol. 9(), 2009
PMID: 19149882
Conservation of plasmid DNA sequences and pathovar identification of strains of Xanthomonas campestris.
Lazo GR, Gabriel DW., Phytopathology 77(3), 1987
PMID: IND87019979
Molecular cloning, chromosomal mapping, and sequence analysis of copper resistance genes from Xanthomonas campestris pv. juglandis
Lee, homology with small blue copper proteins and multicopper oxidase 176(), 1994
Bacterial Leaf Spot Caused by the Quarantine Pathogen Xanthomonas arboricola pv. pruni on Cherry Laurel in Central Italy
Marchi G, Cinelli T, Surico G., Plant Dis. 95(1), 2011
PMID: IND44486611
Antibiotic use in plant agriculture.
McManus PS, Stockwell VO, Sundin GW, Jones AL., Annu Rev Phytopathol 40(), 2002
PMID: 12147767
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Plasmid-mediated resistance to streptomycin in Xanthomonas campestris pv. vesicatoria.
Minsavage GV, Canteros BI, Stall RE., Phytopathology 80(8), 1990
PMID: IND90048978
Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii.
Moreira LM, Almeida NF Jr, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, Gimenez DF, Jones JB, Kitajima EW, Laia ML, Leite RP Jr, Nishiyama MY, Rodrigues Neto J, Nociti LA, Norman DJ, Ostroski EH, Pereira HA Jr, Staskawicz BJ, Tezza RI, Ferro JA, Vinatzer BA, Setubal JC., BMC Genomics 11(), 2010
PMID: 20388224
The HopX (AvrPphE) family of Pseudomonas syringae type III effectors require a catalytic triad and a novel N-terminal domain for function.
Nimchuk ZL, Fisher EJ, Desveaux D, Chang JH, Dangl JL., Mol. Plant Microbe Interact. 20(4), 2007
PMID: 17427805
XopC and XopJ, two novel type III effector proteins from Xanthomonas campestris pv. vesicatoria.
Noel L, Thieme F, Gabler J, Buttner D, Bonas U., J. Bacteriol. 185(24), 2003
PMID: 14645268
Pseudomonas syringae lytic transglycosylases coregulated with the type III secretion system contribute to the translocation of effector proteins into plant cells.
Oh HS, Kvitko BH, Morello JE, Collmer A., J. Bacteriol. 189(22), 2007
PMID: 17827286
First Report on Almond in Europe of Bacterial Spot Disease of Stone Fruits Caused by Xanthomonas arboricola pv. pruni
Palacio-Bielsa A, Rosello M, Cambra MA, Lopez MM., Plant Dis. 94(6), 2010
PMID: IND44392362
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.
Pieretti I, Royer M, Barbe V, Carrere S, Koebnik R, Cociancich S, Couloux A, Darrasse A, Gouzy J, Jacques MA, Lauber E, Manceau C, Mangenot S, Poussier S, Segurens B, Szurek B, Verdier V, Arlat M, Rott P., BMC Genomics 10(), 2009
PMID: 20017926
First report of the quarantine pathogen Xanthomonas arboricola pv. pruni on apricot and plum in Switzerland
Pothier JF, Pelludat C, Bunter M, Genini M, Vogelsanger J, Duffy B., Plant Pathol. 59(2), 2010
PMID: IND44335000
A duplex-PCR method for species- and pathovar-level identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni.
Pothier JF, Pagani MC, Pelludat C, Ritchie DF, Duffy B., J. Microbiol. Methods 86(1), 2011
PMID: 21477624

Randhawa, 1987

Ritchie, 1995
Sprays for control of bacterial spot of peach cultivars having different levels of disease susceptibility, 1998
Ritchie, Fung Nematic Tests 54(), 1999
Linkage of copper resistance and avirulence loci on a self-transmissible plasmid in Xanthomonas campestris pv. vesicatoria
Stall, Mol Plant Pathol 76(), 1986
Terminal reassortment drives the quantum evolution of type III effectors in bacterial pathogens.
Stavrinides J, Ma W, Guttman DS., PLoS Pathog. 2(10), 2006
PMID: 17040127
Sequence variations in alleles of the avirulence gene avrPphE.R2 from Pseudomonas syringae pv. phaseolicola lead to loss of recognition of the AvrPphE protein within bean cells and a gain in cultivar-specific virulence.
Stevens C, Bennett MA, Athanassopoulos E, Tsiamis G, Taylor JD, Mansfield JW., Mol. Microbiol. 29(1), 1998
PMID: 9701811
Genomic insights into the contribution of phytopathogenic bacterial plasmids to the evolutionary history of their hosts.
Sundin GW., Annu Rev Phytopathol 45(), 2007
PMID: 17367270
Cloned avirulence gene of Xanthomonas campestris pv. vesicatoria complements spontaneous race-change mutants
Swanson, Mol Plant Microbe In 1(), 1988
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Ruckert C, Rupp O, Schneiker S, Schuster SC, Vorholter FJ, Weber E, Puhler A, Bonas U, Bartels D, Kaiser O., J. Bacteriol. 187(21), 2005
PMID: 16237009
New type III effectors from Xanthomonas campestris pv. vesicatoria trigger plant reactions dependent on a conserved N-myristoylation motif.
Thieme F, Szczesny R, Urban A, Kirchner O, Hause G, Bonas U., Mol. Plant Microbe Interact. 20(10), 2007
PMID: 17918627
Behaviour of the transposons Tn5 and Tn7 in Xanthomonascampestris pv. campestris
Turner, Mol Gen Genet 195(), 1984
Copper and streptomycin resistance in bacterial strains isolated from stone fruit orchards in New Zealand
Vanneste, NZ Plant Prot 58(), 2005
Reclassification of Xanthomonas
Vauterin, Int J Syst Bacteriol 45(), 1995
The roles of plasmids in phytopathogenic bacteria
Vivian, mobile arsenals? 147(), 2001
Sequence analysis of the small cryptic Xanthomonas campestris pv. vesicatoria plasmid pXV64 encoding a Rep protein similar to gene II protein of phage 12-2.
Weng SF, Fan YF, Tseng YH, Lin JW., Biochem. Biophys. Res. Commun. 231(1), 1997
PMID: 9070232
Amplified fragment length polymorphism fingerprinting of Xanthomonas arboricola pv. pruni
Zaccardelli, J Plant Pathol 81(), 1999
Mini-prep in ten minutes.
Zhou C, Yang Y, Jong AY., BioTechniques 8(2), 1990
PMID: 2317372
Evolution of bacterial pathogenesis.
Ziebuhr W, Ohlsen K, Karch H, Korhonen T, Hacker J., Cell. Mol. Life Sci. 56(9-10), 1999
PMID: 11212331
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 21732961
PubMed | Europe PMC

Suchen in

Google Scholar