The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis

Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)
FEMS Microbiology Letters 323(1): 52-60.

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DOI
Autor*in
Pothier, Joël F.; Vorhölter, Frank-JörgUniBi; Blom, JochenUniBi; Goesmann, AlexanderUniBi ; Pühler, AlfredUniBi ; Smits, TH; Duffy, B
Einrichtung
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Fakultät für Biologie > Proteom- und Metabolomforschung
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Abstract / Bemerkung
The complete DNA sequence of the 41 102-bp plasmid pXap41 from the invasive plant pathogen Xanthomonas arboricola pv. pruni CFBP 5530 was determined and its 44 coding regions were annotated. Comparative analysis with 15 Xanthomonas plasmids and 19 complete genomes revealed that nearly one-fourth of this plasmid has high sequence identity to plasmid pXAC64 and an 8.8-kb chromosomal region of Xanthomonas axonopodis pv. citri strain 306 carrying genes that encode type III effectors and helper proteins. The presence of pXap41 in all X. arboricola pv. pruni genotypes was confirmed for eight strains by plasmid profiling and for 35 X. arboricola pv. pruni isolates with a new plasmid multiplex PCR assay. This plasmid was not detected in any other X. arboricola pathovars (n=12), indicating the potential for the application of the pXap41 PCR method as a pathovar-level detection and identification tool.
Erscheinungsjahr
2011
Zeitschriftentitel
FEMS Microbiology Letters
Band
323
Ausgabe
1
Seite(n)
52-60
ISSN
0378-1097
Page URI
https://pub.uni-bielefeld.de/record/2375634

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Pothier JF, Vorhölter F-J, Blom J, et al. The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 2011;323(1):52-60.
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., & Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), 52-60. https://doi.org/10.1111/j.1574-6968.2011.02352.x
Pothier, Joël F., Vorhölter, Frank-Jörg, Blom, Jochen, Goesmann, Alexander, Pühler, Alfred, Smits, TH, and Duffy, B. 2011. “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”. FEMS Microbiology Letters 323 (1): 52-60.
Pothier, J. F., Vorhölter, F. - J., Blom, J., Goesmann, A., Pühler, A., Smits, T. H., and Duffy, B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323, 52-60.
Pothier, J.F., et al., 2011. The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters, 323(1), p 52-60.
J.F. Pothier, et al., “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, vol. 323, 2011, pp. 52-60.
Pothier, J.F., Vorhölter, F.-J., Blom, J., Goesmann, A., Pühler, A., Smits, T.H., Duffy, B.: The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 323, 52-60 (2011).
Pothier, Joël F., Vorhölter, Frank-Jörg, Blom, Jochen, Goesmann, Alexander, Pühler, Alfred, Smits, TH, and Duffy, B. “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”. FEMS Microbiology Letters 323.1 (2011): 52-60.

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