Development of joint application strategies for two microbial gene finders
McHardy AC, Goesmann A, Pühler A, Meyer F (2004)
BIOINFORMATICS 20(10): 1622-1631.
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Einrichtung
Abstract / Bemerkung
Motivation: As a starting point in annotation of bacterial genomes, gene finding programs are used for the prediction of functional elements in the DNA sequence. Due to the faster pace and increasing number of genome projects currently underway, it is becoming especially important to have performant methods for this task. Results: This study describes the development of joint application strategies that combine the strengths of two microbial gene finders to improve the overall gene finding performance. Critica is very specific in the detection of similarity-supported genes as it uses a comparative sequence analysis-based approach. Glimmer employs a very sophisticated model of genomic sequence properties and is sensitive also in the detection of organism-specific genes. Based on a data set of 113 microbial genome sequences, we optimized a combined application approach using different parameters with relevance to the gene finding problem. This results in a significant improvement in specificity while there is similarity in sensitivity to Glimmer. The improvement is especially pronounced for GC rich genomes. The method is currently being applied for the annotation of several microbial genomes.
Erscheinungsjahr
2004
Zeitschriftentitel
BIOINFORMATICS
Band
20
Ausgabe
10
Seite(n)
1622-1631
ISSN
1367-4803
eISSN
1460-2059
Page URI
https://pub.uni-bielefeld.de/record/1607424
Zitieren
McHardy AC, Goesmann A, Pühler A, Meyer F. Development of joint application strategies for two microbial gene finders. BIOINFORMATICS. 2004;20(10):1622-1631.
McHardy, A. C., Goesmann, A., Pühler, A., & Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS, 20(10), 1622-1631. https://doi.org/10.1093/bioinformatics/bth137
McHardy, A. C., Goesmann, Alexander, Pühler, Alfred, and Meyer, F. 2004. “Development of joint application strategies for two microbial gene finders”. BIOINFORMATICS 20 (10): 1622-1631.
McHardy, A. C., Goesmann, A., Pühler, A., and Meyer, F. (2004). Development of joint application strategies for two microbial gene finders. BIOINFORMATICS 20, 1622-1631.
McHardy, A.C., et al., 2004. Development of joint application strategies for two microbial gene finders. BIOINFORMATICS, 20(10), p 1622-1631.
A.C. McHardy, et al., “Development of joint application strategies for two microbial gene finders”, BIOINFORMATICS, vol. 20, 2004, pp. 1622-1631.
McHardy, A.C., Goesmann, A., Pühler, A., Meyer, F.: Development of joint application strategies for two microbial gene finders. BIOINFORMATICS. 20, 1622-1631 (2004).
McHardy, A. C., Goesmann, Alexander, Pühler, Alfred, and Meyer, F. “Development of joint application strategies for two microbial gene finders”. BIOINFORMATICS 20.10 (2004): 1622-1631.
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Zhang KY, Gao YZ, Du MZ, Liu S, Dong C, Guo FB., Front Microbiol 10(), 2019
PMID: 30814982
Zhang KY, Gao YZ, Du MZ, Liu S, Dong C, Guo FB., Front Microbiol 10(), 2019
PMID: 30814982
Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome.
Xie G, Johnson SL, Davenport KW, Rajavel M, Waldminghaus T, Detter JC, Chain PS, Sozhamannan S., Int J Genomics 2017(), 2017
PMID: 28951866
Xie G, Johnson SL, Davenport KW, Rajavel M, Waldminghaus T, Detter JC, Chain PS, Sozhamannan S., Int J Genomics 2017(), 2017
PMID: 28951866
Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans.
Wegmann U, Louis P, Goesmann A, Henrissat B, Duncan SH, Flint HJ., Environ Microbiol 16(9), 2014
PMID: 23919528
Wegmann U, Louis P, Goesmann A, Henrissat B, Duncan SH, Flint HJ., Environ Microbiol 16(9), 2014
PMID: 23919528
Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus.
Saum SH, Pfeiffer F, Palm P, Rampp M, Schuster SC, Müller V, Oesterhelt D., Environ Microbiol 15(5), 2013
PMID: 22583374
Saum SH, Pfeiffer F, Palm P, Rampp M, Schuster SC, Müller V, Oesterhelt D., Environ Microbiol 15(5), 2013
PMID: 22583374
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A., J Biotechnol 167(2), 2013
PMID: 23280342
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A., J Biotechnol 167(2), 2013
PMID: 23280342
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.
Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., PLoS One 8(2), 2013
PMID: 23409014
Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., PLoS One 8(2), 2013
PMID: 23409014
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics.
Smits TH, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B., Syst Appl Microbiol 36(7), 2013
PMID: 23726521
Smits TH, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B., Syst Appl Microbiol 36(7), 2013
PMID: 23726521
Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342.
De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits TH, Duffy B, Coutinho TA., J Bacteriol 194(6), 2012
PMID: 22374951
De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits TH, Duffy B, Coutinho TA., J Bacteriol 194(6), 2012
PMID: 22374951
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A., BMC Genomics 13(), 2012
PMID: 22443545
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Pühler A., BMC Genomics 13(), 2012
PMID: 22443545
Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M., J Bacteriol 194(24), 2012
PMID: 23043000
Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M., J Bacteriol 194(24), 2012
PMID: 23043000
A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.
Schwibbert K, Marin-Sanguino A, Bagyan I, Heidrich G, Lentzen G, Seitz H, Rampp M, Schuster SC, Klenk HP, Pfeiffer F, Oesterhelt D, Kunte HJ., Environ Microbiol 13(8), 2011
PMID: 20849449
Schwibbert K, Marin-Sanguino A, Bagyan I, Heidrich G, Lentzen G, Seitz H, Rampp M, Schuster SC, Klenk HP, Pfeiffer F, Oesterhelt D, Kunte HJ., Environ Microbiol 13(8), 2011
PMID: 20849449
Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.
Han JI, Choi HK, Lee SW, Orwin PM, Kim J, Laroe SL, Kim TG, O'Neil J, Leadbetter JR, Lee SY, Hur CG, Spain JC, Ovchinnikova G, Goodwin L, Han C., J Bacteriol 193(5), 2011
PMID: 21183664
Han JI, Choi HK, Lee SW, Orwin PM, Kim J, Laroe SL, Kim TG, O'Neil J, Leadbetter JR, Lee SY, Hur CG, Spain JC, Ovchinnikova G, Goodwin L, Han C., J Bacteriol 193(5), 2011
PMID: 21183664
Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1.
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS One 6(7), 2011
PMID: 21789243
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS One 6(7), 2011
PMID: 21789243
An integrative method for identifying the over-annotated protein-coding genes in microbial genomes.
Yu JF, Xiao K, Jiang DK, Guo J, Wang JH, Sun X., DNA Res 18(6), 2011
PMID: 21903723
Yu JF, Xiao K, Jiang DK, Guo J, Wang JH, Sun X., DNA Res 18(6), 2011
PMID: 21903723
Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.
Schröder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
PMID: 22053731
Schröder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
PMID: 22053731
Erwinia amylovora novel plasmid pEI70: complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen.
Llop P, Cabrefiga J, Smits TH, Dreo T, Barbé S, Pulawska J, Bultreys A, Blom J, Duffy B, Montesinos E, López MM., PLoS One 6(12), 2011
PMID: 22174857
Llop P, Cabrefiga J, Smits TH, Dreo T, Barbé S, Pulawska J, Bultreys A, Blom J, Duffy B, Montesinos E, López MM., PLoS One 6(12), 2011
PMID: 22174857
A single-base resolution map of an archaeal transcriptome.
Wurtzel O, Sapra R, Chen F, Zhu Y, Simmons BA, Sorek R., Genome Res 20(1), 2010
PMID: 19884261
Wurtzel O, Sapra R, Chen F, Zhu Y, Simmons BA, Sorek R., Genome Res 20(1), 2010
PMID: 19884261
Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity.
Sorek R, Cossart P., Nat Rev Genet 11(1), 2010
PMID: 19935729
Sorek R, Cossart P., Nat Rev Genet 11(1), 2010
PMID: 19935729
Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity.
Smits TH, Jaenicke S, Rezzonico F, Kamber T, Goesmann A, Frey JE, Duffy B., BMC Genomics 11(), 2010
PMID: 20047678
Smits TH, Jaenicke S, Rezzonico F, Kamber T, Goesmann A, Frey JE, Duffy B., BMC Genomics 11(), 2010
PMID: 20047678
Differential proteomic analysis reveals novel links between primary metabolism and antibiotic production in Amycolatopsis balhimycina.
Gallo G, Renzone G, Alduina R, Stegmann E, Weber T, Lantz AE, Thykaer J, Sangiorgi F, Scaloni A, Puglia AM., Proteomics 10(7), 2010
PMID: 20049855
Gallo G, Renzone G, Alduina R, Stegmann E, Weber T, Lantz AE, Thykaer J, Sangiorgi F, Scaloni A, Puglia AM., Proteomics 10(7), 2010
PMID: 20049855
Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer.
Fischer W, Windhager L, Rohrer S, Zeiller M, Karnholz A, Hoffmann R, Zimmer R, Haas R., Nucleic Acids Res 38(18), 2010
PMID: 20478826
Fischer W, Windhager L, Rohrer S, Zeiller M, Karnholz A, Hoffmann R, Zimmer R, Haas R., Nucleic Acids Res 38(18), 2010
PMID: 20478826
Deciphering the physiological blueprint of a bacterial cell: revelations of unanticipated complexity in transcriptome and proteome.
Toledo-Arana A, Solano C., Bioessays 32(6), 2010
PMID: 20486131
Toledo-Arana A, Solano C., Bioessays 32(6), 2010
PMID: 20486131
Genome sequence of the biocontrol agent Pantoea vagans strain C9-1.
Smits TH, Rezzonico F, Kamber T, Goesmann A, Ishimaru CA, Stockwell VO, Frey JE, Duffy B., J Bacteriol 192(24), 2010
PMID: 20952567
Smits TH, Rezzonico F, Kamber T, Goesmann A, Ishimaru CA, Stockwell VO, Frey JE, Duffy B., J Bacteriol 192(24), 2010
PMID: 20952567
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Pühler A, Klenk HP, Richter M, Schüler M, Glöckner FO, Meyerdierks A, Gottschalk G, Amann R., Environ Microbiol 11(5), 2009
PMID: 19187283
Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Pühler A, Klenk HP, Richter M, Schüler M, Glöckner FO, Meyerdierks A, Gottschalk G, Amann R., Environ Microbiol 11(5), 2009
PMID: 19187283
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla.
Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, Verberkmoes NC, Hettich RL, Gordon JI., Proc Natl Acad Sci U S A 106(14), 2009
PMID: 19321416
Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, Verberkmoes NC, Hettich RL, Gordon JI., Proc Natl Acad Sci U S A 106(14), 2009
PMID: 19321416
Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry.
Wegmann U, Overweg K, Horn N, Goesmann A, Narbad A, Gasson MJ, Shearman C., J Bacteriol 191(22), 2009
PMID: 19767436
Wegmann U, Overweg K, Horn N, Goesmann A, Narbad A, Gasson MJ, Shearman C., J Bacteriol 191(22), 2009
PMID: 19767436
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains.
Hill KK, Xie G, Foley BT, Smith TJ, Munk AC, Bruce D, Smith LA, Brettin TS, Detter JC., BMC Biol 7(), 2009
PMID: 19804621
Hill KK, Xie G, Foley BT, Smith TJ, Munk AC, Bruce D, Smith LA, Brettin TS, Detter JC., BMC Biol 7(), 2009
PMID: 19804621
Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1.
Pfeiffer F, Schuster SC, Broicher A, Falb M, Palm P, Rodewald K, Ruepp A, Soppa J, Tittor J, Oesterhelt D., Genomics 91(4), 2008
PMID: 18313895
Pfeiffer F, Schuster SC, Broicher A, Falb M, Palm P, Rodewald K, Ruepp A, Soppa J, Tittor J, Oesterhelt D., Genomics 91(4), 2008
PMID: 18313895
Comparative genomic analysis of Mycobacterium avium subspecies obtained from multiple host species.
Paustian ML, Zhu X, Sreevatsan S, Robbe-Austerman S, Kapur V, Bannantine JP., BMC Genomics 9(), 2008
PMID: 18366709
Paustian ML, Zhu X, Sreevatsan S, Robbe-Austerman S, Kapur V, Bannantine JP., BMC Genomics 9(), 2008
PMID: 18366709
Genome sequences of Halobacterium species.
Ng WV, Berquist BR, Coker JA, Capes M, Wu TH, DasSarma P, DasSarma S., Genomics 91(6), 2008
PMID: 18538726
Ng WV, Berquist BR, Coker JA, Capes M, Wu TH, DasSarma P, DasSarma S., Genomics 91(6), 2008
PMID: 18538726
Genome information management and integrated data analysis with HaloLex.
Pfeiffer F, Broicher A, Gillich T, Klee K, Mejía J, Rampp M, Oesterhelt D., Arch Microbiol 190(3), 2008
PMID: 18592220
Pfeiffer F, Broicher A, Gillich T, Klee K, Mejía J, Rampp M, Oesterhelt D., Arch Microbiol 190(3), 2008
PMID: 18592220
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.
Gross R, Guzman CA, Sebaihia M, dos Santos VA, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Rückert C, Schneiker-Bekel S, Schulze K, Vorhölter FJ, Yevsa T, Engle JT, Goldman WE, Pühler A, Göbel UB, Goesmann A, Blöcker H, Kaiser O, Martinez-Arias R., BMC Genomics 9(), 2008
PMID: 18826580
Gross R, Guzman CA, Sebaihia M, dos Santos VA, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Rückert C, Schneiker-Bekel S, Schulze K, Vorhölter FJ, Yevsa T, Engle JT, Goldman WE, Pühler A, Göbel UB, Goesmann A, Blöcker H, Kaiser O, Martinez-Arias R., BMC Genomics 9(), 2008
PMID: 18826580
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.
Levicán G, Ugalde JA, Ehrenfeld N, Maass A, Parada P., BMC Genomics 9(), 2008
PMID: 19055775
Levicán G, Ugalde JA, Ehrenfeld N, Maass A, Parada P., BMC Genomics 9(), 2008
PMID: 19055775
GISMO--gene identification using a support vector machine for ORF classification.
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F., Nucleic Acids Res 35(2), 2007
PMID: 17175534
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F., Nucleic Acids Res 35(2), 2007
PMID: 17175534
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363.
Wegmann U, O'Connell-Motherway M, Zomer A, Buist G, Shearman C, Canchaya C, Ventura M, Goesmann A, Gasson MJ, Kuipers OP, van Sinderen D, Kok J., J Bacteriol 189(8), 2007
PMID: 17307855
Wegmann U, O'Connell-Motherway M, Zomer A, Buist G, Shearman C, Canchaya C, Ventura M, Goesmann A, Gasson MJ, Kuipers OP, van Sinderen D, Kok J., J Bacteriol 189(8), 2007
PMID: 17307855
Locomotif: from graphical motif description to RNA motif search.
Reeder J, Reeder J, Giegerich R., Bioinformatics 23(13), 2007
PMID: 17646322
Reeder J, Reeder J, Giegerich R., Bioinformatics 23(13), 2007
PMID: 17646322
CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A., BMC Syst Biol 1(), 2007
PMID: 18034885
Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A., BMC Syst Biol 1(), 2007
PMID: 18034885
Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids.
Smith TJ, Hill KK, Foley BT, Detter JC, Munk AC, Bruce DC, Doggett NA, Smith LA, Marks JD, Xie G, Brettin TS., PLoS One 2(12), 2007
PMID: 18060065
Smith TJ, Hill KK, Foley BT, Detter JC, Munk AC, Bruce DC, Doggett NA, Smith LA, Marks JD, Xie G, Brettin TS., PLoS One 2(12), 2007
PMID: 18060065
ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.
Guo FB, Zhang CT., BMC Bioinformatics 7(), 2006
PMID: 16401352
Guo FB, Zhang CT., BMC Bioinformatics 7(), 2006
PMID: 16401352
Emerging Corynebacterium glutamicum systems biology.
Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W., J Biotechnol 124(1), 2006
PMID: 16406159
Wendisch VF, Bott M, Kalinowski J, Oldiges M, Wiechert W., J Biotechnol 124(1), 2006
PMID: 16406159
The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity.
Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, Pfeiffer F, Oesterhelt D., BMC Genomics 7(), 2006
PMID: 16820047
Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, Pfeiffer F, Oesterhelt D., BMC Genomics 7(), 2006
PMID: 16820047
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN., Nat Biotechnol 24(8), 2006
PMID: 16878126
Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN., Nat Biotechnol 24(8), 2006
PMID: 16878126
Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.
Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Böhm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker S, Syed AA, Thauer R, Vorhölter FJ, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A., Nat Biotechnol 24(11), 2006
PMID: 17057704
Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Böhm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker S, Syed AA, Thauer R, Vorhölter FJ, Weidner S, Pühler A, Reinhold-Hurek B, Kaiser O, Goesmann A., Nat Biotechnol 24(11), 2006
PMID: 17057704
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.
Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, Davis CR, Detter C, Do KF, Dobrinski KP, Faza BI, Fitzpatrick KA, Freyermuth SK, Harmer TL, Hauser LJ, Hügler M, Kerfeld CA, Klotz MG, Kong WW, Land M, Lapidus A, Larimer FW, Longo DL, Lucas S, Malfatti SA, Massey SE, Martin DD, McCuddin Z, Meyer F, Moore JL, Ocampo LH, Paul JH, Paulsen IT, Reep DK, Ren Q, Ross RL, Sato PY, Thomas P, Tinkham LE, Zeruth GT., PLoS Biol 4(12), 2006
PMID: 17105352
Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, Davis CR, Detter C, Do KF, Dobrinski KP, Faza BI, Fitzpatrick KA, Freyermuth SK, Harmer TL, Hauser LJ, Hügler M, Kerfeld CA, Klotz MG, Kong WW, Land M, Lapidus A, Larimer FW, Longo DL, Lucas S, Malfatti SA, Massey SE, Martin DD, McCuddin Z, Meyer F, Moore JL, Ocampo LH, Paul JH, Paulsen IT, Reep DK, Ren Q, Ross RL, Sato PY, Thomas P, Tinkham LE, Zeruth GT., PLoS Biol 4(12), 2006
PMID: 17105352
Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners.
Ruby EG, Urbanowski M, Campbell J, Dunn A, Faini M, Gunsalus R, Lostroh P, Lupp C, McCann J, Millikan D, Schaefer A, Stabb E, Stevens A, Visick K, Whistler C, Greenberg EP., Proc Natl Acad Sci U S A 102(8), 2005
PMID: 15703294
Ruby EG, Urbanowski M, Campbell J, Dunn A, Faini M, Gunsalus R, Lostroh P, Lupp C, McCann J, Millikan D, Schaefer A, Stabb E, Stevens A, Visick K, Whistler C, Greenberg EP., Proc Natl Acad Sci U S A 102(8), 2005
PMID: 15703294
Sequence finishing and gene mapping for Candida albicans chromosome 7 and syntenic analysis against the Saccharomyces cerevisiae genome.
Chibana H, Oka N, Nakayama H, Aoyama T, Magee BB, Magee PT, Mikami Y., Genetics 170(4), 2005
PMID: 15937140
Chibana H, Oka N, Nakayama H, Aoyama T, Magee BB, Magee PT, Mikami Y., Genetics 170(4), 2005
PMID: 15937140
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Pühler A., J Bacteriol 187(13), 2005
PMID: 15968079
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Pühler A., J Bacteriol 187(13), 2005
PMID: 15968079
BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser.
Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F., Nucleic Acids Res 33(web server issue), 2005
PMID: 15980569
Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F., Nucleic Acids Res 33(web server issue), 2005
PMID: 15980569
Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis.
Falb M, Pfeiffer F, Palm P, Rodewald K, Hickmann V, Tittor J, Oesterhelt D., Genome Res 15(10), 2005
PMID: 16169924
Falb M, Pfeiffer F, Palm P, Rodewald K, Hickmann V, Tittor J, Oesterhelt D., Genome Res 15(10), 2005
PMID: 16169924
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Büttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klösgen U, Patschkowski T, Rückert C, Rupp O, Schneiker S, Schuster SC, Vorhölter FJ, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O., J Bacteriol 187(21), 2005
PMID: 16237009
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Büttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klösgen U, Patschkowski T, Rückert C, Rupp O, Schneiker S, Schuster SC, Vorhölter FJ, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O., J Bacteriol 187(21), 2005
PMID: 16237009
Metagenomics: DNA sequencing of environmental samples.
Tringe SG, Rubin EM., Nat Rev Genet 6(11), 2005
PMID: 16304596
Tringe SG, Rubin EM., Nat Rev Genet 6(11), 2005
PMID: 16304596
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