155 Publikationen

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[155]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320
S. D. Cardoso, D. Goncalves, A. Goesmann, A. V. M. Canario, and R. F. Oliveira, “Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish”, MOLECULAR ECOLOGY, 2018, 27, 789-803.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526
O. V. Golyshina, H. Tran, O. N. Reva, S. Lemak, A. F. Yakunin, A. Goesmann, T. Y. Nechitaylo, V. LaCono, F. Smedile, A. Slesarev, et al., “Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T”, SCIENTIFIC REPORTS, 2017, 7, : 3682.
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
O. Blifernez-Klassen, D. Wibberg, A. Winkler, J. Blom, A. Goesmann, J. Kalinowski, and O. Kruse, “Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)”, Genome Announcements, 2016, 4, : e00524-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[152]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
M. Arnold, D. Wibberg, J. Blom, S. Schatschneider, A. Winkler, Y. Kutter, C. Rückert, A. Albersmeier, S. Albaum, A. Goesmann, et al., “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”, Genome announcements, 2015, 3.
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
O. Rupp, K. Brinkrolf, C. Buerth, M. Kunigo, J. Schneider, S. Jaenicke, A. Goesmann, A. Pühler, K. - E. Jaeger, and J. F. Ernst, “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, 2015, 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
M. Pauli, N. Chakarov, O. Rupp, J. Kalinowski, A. Goesmann, M. Sorenson, O. Krüger, and J. Hoffman, “De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite”, BMC Genomics, 2015, 16, : 1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[149]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279
S. Huja, Y. Oren, E. Trost, E. Brzuszkiewicz, D. Biran, J. Blom, A. Goesmann, G. Gottschalk, J. Hacker, E. Z. Ron, et al., “Genomic Avenue to Avian Colisepticemia”, mBio, 2015, 6, : e01681-14.
PUB | DOI | WoS | PubMed | Europe PMC
 
[148]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423
N. Chakarov, B. Linke, M. Boerner, A. Goesmann, O. Krüger, and J. Hoffman, “Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite”, Molecular Ecology, 2015, 24, 1355-1363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[147]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652
A. Bonte, H. Neuweger, A. Goesmann, C. Thonar, P. Mäder, G. Langenkämper, and K. Niehaus, “Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems”, Journal of the science of food and agriculture, 2014, 94, 2605-2612.
PUB | DOI | WoS | PubMed | Europe PMC
 
[146]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174
G. Christiansen, A. Goesmann, and R. Kurmayer, “Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix”, Applied and environmental microbiology, 2014, 80, 4887-4897.
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682
U. Wegmann, P. Louis, A. Goesmann, B. Henrissat, S. H. Duncan, and H. J. Flint, “Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans”, Environmental microbiology, 2014, 16, 2879-2890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
J. C. Dohm, A. E. Minoche, D. Holtgräwe, S. Capella-Gutiérrez, F. Zakrzewski, H. Tafer, O. Rupp, T. Rosleff Sörensen, R. Stracke, R. Reinhardt, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, 2014, 505, 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
P. Tielen, D. Wibberg, J. Blom, N. Rosin, A. - K. Meyer, B. Bunk, M. Schobert, R. Tüpker, S. Schatschneider, C. Rückert, et al., “Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection”, Genome announcements, 2014, 2.
PUB | DOI | PubMed | Europe PMC
 
[140]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, N. Fischer, A. Steinkämper, A. Pühler, R. Biener, D. Schwartz, and J. Kalinowski, “Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin”, Journal of biotechnology, 2014, 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, K. Sahm, A. Basner, S. Wiebusch, P. John, U. Lorenz, A. Peters, F. Abe, K. Takahashi, O. Kaiser, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, 2014, 18, 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
T. H. M. Smits, F. Rezzonico, M. M. López, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics”, Systematic and applied microbiology, 2013, 36, 449-456.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
M. Vences, S. Hauswaldt, S. Steinfartz, O. Rupp, A. Goesmann, S. Künzel, P. Orozco-Terwengel, D. R. Vieites, S. Nieto-Roman, S. Haas, et al., “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”, Molecular phylogenetics and evolution, 2013, 68, 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, 2013, 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
K. A. K. Köhler, C. Rückert, S. Schatschneider, F. - J. Vorhölter, R. Szczepanowski, L. M. Blank, K. Niehaus, A. Goesmann, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil”, Journal of Biotechnology, 2013, 168, 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
S. Barbe, P. Llop, J. Blom, J. Cabrefiga, A. Goesmann, B. Duffy, E. Montesinos, T. H. M. Smits, and M. M. Lopez, “Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence”, Plant Pathology, 2013, 62, 786-798.
PUB | DOI | WoS
 
[132]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
T. Riedel, L. Gómez-Consarnau, J. Tomasch, M. Martin, M. Jarek, J. M. González, S. Spring, M. Rohlfs, T. Brinkhoff, H. Cypionka, et al., “Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein”, PLOS ONE, 2013, 8, e57487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
M. Fritzenwanker, C. Kuenne, A. Billion, T. Hain, K. Zimmermann, A. Goesmann, T. Chakraborty, and E. Domann, “Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431”, Genome Announcements, 2013, 1, e00165-12.
PUB | DOI | PubMed | Europe PMC
 
[129]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
J. Toepel, M. Illmer-Kephalides, S. Jaenicke, J. Straube, P. May, A. Goesmann, and O. Kruse, “New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics”, Plant Biotechnology Journal, 2013, 11, 717-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, D. Iftime, E. M. Musiol, K. Blin, W. Wohlleben, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, 2013, 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
R. A. Mann, T. H. M. Smits, A. Bühlmann, J. Blom, A. Goesmann, J. E. Frey, K. M. Plummer, S. V. Beer, J. Luck, B. Duffy, et al., “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”, PLOS ONE, 2013, 8, e55644.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
C. Kuenne, A. Billion, M. A. Mraheil, A. Strittmatter, R. Daniel, A. Goesmann, S. Barbuddhe, T. Hain, and T. Chakraborty, “Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome”, BMC Genomics, 2013, 14, 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[123]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
N. Kessler, A. Bonte, G. Langenkämper, K. Niehaus, A. Goesmann, and T. W. Nattkemper, “MeltDB 2.0 - Advances of the metabolomics software system”, Bioinformatics, 2013, 29, 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
[122]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
A. Bonte, N. Kessler, T. W. Nattkemper, A. Goesmann, T. Cecile, P. Mäder, K. Niehaus, and G. Langenkämper, In Press.
PUB
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
M. Zakrzewski, A. Goesmann, S. Jaenicke, S. Jünemann, F. G. Eikmeyer, R. Szczepanowski, W. A. Al-Soud, S. Sørensen, A. Pühler, and A. Schlüter, “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”, Journal of Biotechnology, 2012, 158, 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
M. T. Rose, T. J. Rose, J. Pariasca-Tanaka, T. Yoshihashi, H. Neuweger, A. Goesmann, M. Frei, and M. Wissuwa, “Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess”, Planta, 2012, 236, 959-973.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, K. Zimmermann, J. Blom, A. Goesmann, C. Pohlmann, and F. Gunzer, “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, 2012, 7, e33351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2012, 7.
PUB | DOI | PubMed | Europe PMC
 
[116]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
S. Heinl, D. Wibberg, F. G. Eikmeyer, R. Szczepanowski, J. Blom, B. Linke, A. Goesmann, R. Grabherr, H. Schwab, A. Pühler, et al., “Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage”, Journal of Biotechnology, 2012, 161, 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
[115]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
A. Rademacher, M. Zakrzewski, A. Schlüter, M. Schonberg, R. Szczepanowski, A. Goesmann, A. Pühler, and M. Klocke, “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”, FEMS Microbiology Ecology, 2012, 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
M. Filippini, W. Qi, J. Blom, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium”, Journal of bacteriology, 2012, 194, 3555.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
C. Trötschel, S. Albaum, D. Wolff, S. Schröder, A. Goesmann, T. W. Nattkemper, and A. Poetsch, “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, 2012, 11, 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[112]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars”, International journal of food microbiology, 2012, 155, 247-256.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
J. Schneider, O. Rupp, E. Trost, S. Jaenicke, V. Passoth, A. Goesmann, A. Tauch, and K. Brinkrolf, “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”, FEMS Yeast Research, 2012, 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
M. Persicke, C. Rückert, J. Plassmeier, L. Stutz, N. Kessler, J. Kalinowski, A. Goesmann, and H. Neuweger, “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”, Metabolomics, 2012, 8, 310-322.
PUB | DOI | WoS
 
[108]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
T. Kahlke, A. Goesmann, E. Hjerde, N. P. Willassen, and P. Haugen, “Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation”, BMC genomics, 2012, 13, 179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
J. Schneider, H. Andrea, J. Blom, S. Jaenicke, C. Rückert, C. Schorsch, R. Szczepanowski, M. Farwick, A. Goesmann, A. Pühler, et al., “Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10”, Eukaryotic Cell, 2012, 11, 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
F. Rezzonico, A. Braun-Kiewnick, R. A. Mann, B. Rodoni, A. Goesmann, B. Duffy, and T. H. M. Smits, “Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora”, Molecular plant pathology, 2012, 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
[104]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
P. De Maayer, W. Y. Chan, F. Rezzonico, A. Bühlmann, S. N. Venter, J. Blom, A. Goesmann, J. E. Frey, T. H. M. Smits, B. Duffy, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, 2012, 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[103]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
S. Schork, A. Schlüter, J. Blom, S. Schneiker-Bekel, A. Pühler, A. Goesmann, M. Frosch, and C. Schoen, “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”, Journal of Bacteriology, 2012, 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, C. Kuenne, J. Blom, P. W. Dabrowski, B. Linke, T. Hain, A. Nitsche, A. Goesmann, J. Larsen, L. B. Jensen, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, 2012, 194, 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[98]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[97]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[96]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[95]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
V. Thomas, C. Bertelli, F. Collyn, N. Casson, A. Telenti, A. Goesmann, A. Croxatto, and G. Greub, “Lausannevirus, a giant amoebal virus encoding histone doublets”, Environmental Microbiology, 2011, 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
[92]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2011, 6, : e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
[91]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, J. Blom, S. Jaenicke, B. Linke, K. Brinkrolf, H. Neuweger, A. Tauch, and A. Goesmann, “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, 2011, 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
J. M. Gonzalez, J. Pinhassi, B. Fernández-Gómez, M. Coll-Llado, M. Gonzalez-Velazquez, P. Puigbo, S. Jaenicke, L. Gomez-Consarnau, A. Fernandez-Guerra, A. Goesmann, et al., “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”, Applied and Environmental Microbiology, 2011, 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, C. A. Ishimaru, J. E. Frey, V. O. Stockwell, and B. Duffy, “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, 2011, 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, J. Blom, J. Winnebald, A. Berhoerster, M. J. Barnett, A. Goesmann, J. Baumbach, and A. Becker, “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, 2011, 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
PUB | DOI
 
[86]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
D. Doppmeier, R. Stracke, P. Lutter, A. Goesmann, K. Niehaus, and B. Weisshaar, 2011, p. 218.
PUB
 
[85]
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
S. Jaenicke, M. Zakrzewski, S. Jünemann, A. Pühler, A. Goesmann, and A. Schlüter, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (Ed.: F.J. de Bruijn), Wiley-Blackwell, 2011, p. 403-414.
PUB | DOI
 
[84]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, R. F. Schwarz, B. Linke, J. Blom, A. Becker, H. Claus, A. Goesmann, M. Frosch, T. Mueller, U. Vogel, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, 2011, 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, J. Weber-Lehmann, J. Blom, B. Joseph, A. Goesmann, A. Strittmatter, and M. Frosch, “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, 2011, 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, T. Jakobi, D. Doppmeier, S. Jaenicke, J. Kalinowski, J. Stoye, and A. Goesmann, “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, 2011, 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[80]
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, T. Jakobi, J. Blom, D. Doppmeier, K. Brinkrolf, R. Szczepanowski, S. H. Bernhart, C. Höner zu Siederdissen, J. A. H. Bort, M. Wieser, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, 2011, 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
I. Margaret, A. Becker, J. Blom, I. Bonilla, A. Goesmann, M. Göttfert, J. Lloret, V. Mittard-Runte, C. Rückert, J. - E. Ruiz-Sainz, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, 2011, 155, 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, 2011, 27, 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”, Journal of Bacteriology, 2011, 193, 2066.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
J. Schneider, F. - J. Vorhölter, E. Trost, J. Blom, Y. R. Musa, H. Neuweger, K. Niehaus, S. Schatschneider, A. Tauch, and A. Goesmann, “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, 2010, 9, 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[73]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
E. Trost, L. Ott, J. Schneider, J. Schröder, S. Jaenicke, A. Goesmann, P. Husemann, J. Stoye, F. Alves Dorella, F. Souza Rocha, et al., “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”, BMC Genomics, 2010, 11, : 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
C. Bertelli, F. Collyn, A. Croxatto, C. Rückert, A. Polkinghorne, C. Kebbi-Beghdadi, A. Goesmann, L. Vaughan, and G. Greub, “The Waddlia Genome: A Window into Chlamydial Biology”, PLOS ONE, 2010, 5, e10890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
T. H. M. Smits, F. Rezzonico, C. Pelludat, A. Goesmann, J. E. Frey, and B. Duffy, “Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3”, FEMS MICROBIOLOGY LETTERS, 2010, 308, 48-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
E. Trost, S. Götker, J. Schneider, S. Schneiker-Bekel, R. Szczepanowski, A. Tilker, P. Viehöver, W. Arnold, T. Bekel, J. Blom, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, 2010, 11, : 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[69]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504
I. Yang, U. John, S. Beszteri, G. Glöckner, B. Krock, A. Goesmann, and A. D. Cembella, “Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum”, BMC Genomics, 2010, 11, 248.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[68]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2010, 23, 384-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
V. Mittard-Runte, T. Bekel, J. Blom, M. Dondrup, K. Henckel, S. Jaenicke, L. Krause, B. Linke, H. Neuweger, S. Schneiker-Bekel, et al., in Introduction to Marine Genomics (Advances in Marine Genomics) (Eds.: J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard), Springer Netherlands, Netherlands, 2010, p. 315-396.
PUB | DOI
 
[66]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644
T. H. M. Smits, S. Jaenicke, F. Rezzonico, T. Kamber, A. Goesmann, J. E. Frey, and B. Duffy, “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”, BMC Genomics, 2010, 11, 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[65]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579
M. Farnbacher, T. Jahns, D. Willrodt, R. Daniel, R. Haas, A. Goesmann, S. Kurtz, and G. Rieder, “Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8”, BMC Genomics, 2010, 11, 335.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
C. Steinweg, C. T. Kuenne, A. Billion, M. A. Mraheil, E. Domann, R. Ghai, S. B. Barbuddhe, U. Kaerst, A. Goesmann, A. Pühler, et al., “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”, Journal of Bacteriology, 2010, 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
C. Kuenne, S. Voget, J. Pischimarov, S. Oehm, A. Goesmann, R. Daniel, T. Hain, and T. Chakraborty, “Comparative Analysis of Plasmids in the Genus Listeria”, PLOS ONE, 2010, 5, e12511.
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319
K. Henckel, H. Küster, L. Stutz, and A. Goesmann, “MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.”, BMC Research Notes, 2010, 3, 262.
PUB | PDF | DOI | PubMed | Europe PMC
 
[61]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
T. H. M. Smits, F. Rezzonico, T. Kamber, A. Goesmann, C. A. Ishimaru, V. O. Stockwell, J. E. Frey, and B. Duffy, “Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1”, Journal of Bacteriology, 2010, 192, 6486-6487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
N. Gehlenborg, S. I. O'Donoghue, N. S. Baliga, A. Goesmann, M. A. Hibbs, H. Kitano, O. Kohlbacher, H. Neuweger, R. Schneider, D. Tenenbaum, et al., “Visualization of omics data for systems biology”, Nat Methods, 2010, 7, S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
B. Joseph, S. Schneiker-Bekel, A. Schramm-Glueck, J. Blom, H. Claus, B. Linke, R. F. Schwarz, A. Becker, A. Goesmann, M. Frosch, et al., “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”, JOURNAL OF BACTERIOLOGY, 2010, 192, 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
A. Goesmann, J. Schneider, E. Trost, and A. Tauch, “Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren”, BIOspektrum, 2009, 15, 279-281.
PUB
 
[57]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022
J. Krawczyk, A. Goesmann, R. Nolte, M. Werber, and B. Weisshaar, “Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format”, Source Code for Biology and Medicine, 2009, 4, 4.
PUB | PDF | DOI | PubMed | Europe PMC
 
[56]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
H. Neuweger, M. Persicke, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Winnebald, J. Schneider, J. Kalinowski, and A. Goesmann, “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”, BMC Systems Biology, 2009, 3, : 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[55]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. - J. Vorhölter, M. Zakrzewski, and A. Goesmann, “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, 2009, 10, : 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[54]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300
K. Henckel, K. J. Runte, T. Bekel, M. Dondrup, T. Jakobi, H. Küster, and A. Goesmann, “TRUNCATULIX - a data warehouse for the legume community”, BMC Plant Biology, 2009, 9, 19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
A. W. Strittmatter, H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R. Martinez-Arias, D. Bartels, et al., “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”, ENVIRONMENTAL MICROBIOLOGY, 2009, 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
[52]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
A. Becker, M. J. Barnett, D. Capela, M. Dondrup, P. - B. Kamp, E. Krol, B. Linke, S. Rüberg, K. Runte, B. K. Schroeder, et al., “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
N. N. Diaz, L. Krause, A. Goesmann, K. Niehaus, and T. W. Nattkemper, “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, 2009, 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[50]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
M. Dondrup, S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C. K. Kleindt, H. Kuester, B. Linke, D. Mertens, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, 2009, 10, : 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[49]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
W. Gerlach, S. Jünemann, F. Tille, A. Goesmann, and J. Stoye, “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, 2009, 10, 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[48]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, H. Neuweger, B. Fraenzel, S. Lange, D. Mertens, C. Troetschel, D. Wolters, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, 2009, 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
U. Wegmann, K. Overweg, N. Horn, A. Goesmann, A. Narbad, M. J. Gasson, and C. Shearman, “Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry”, JOURNAL OF BACTERIOLOGY, 2009, 191, 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
M. Dondrup, A. T. Hueser, D. Mertens, and A. Goesmann, “An evaluation framework for statistical tests on microarray data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
H. Neuweger, S. Albaum, M. Dondrup, M. Persicke, T. Watt, K. Niehaus, J. Stoye, and A. Goesmann, “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”, Bioinformatics, 2008, 24, 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[43]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
R. Gross, C. A. Guzman, M. Sebaihia, V. A. P. Martins dos Santos, D. H. Pieper, R. Koebnik, M. Lechner, D. Bartels, J. Buhrmester, J. V. Choudhuri, et al., “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”, BMC Genomics, 2008, 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
F. - J. Vorhölter, S. Schneiker-Bekel, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, et al., “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”, Journal of Biotechnology, 2008, 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
C. Schoen, J. Blom, H. Claus, A. Schramm-Glueck, P. Brandt, T. Mueller, A. Goesmann, B. Joseph, S. Konietzny, O. Kurzai, et al., “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105, 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[40]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
L. Krause, N. N. Diaz, R. A. Edwards, K. - H. Gartemann, H. Krömeke, H. Neuweger, A. Pühler, K. J. Runte, A. Schlüter, J. Stoye, et al., “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
M. Stiens, A. Becker, T. Bekel, V. Gödde, A. Goesmann, K. Niehaus, S. Schneiker-Bekel, W. Selbitschka, S. Weidner, A. Schlüter, et al., “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”, Journal of Biotechnology, 2008, 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
A. Schlüter, T. Bekel, N. N. Diaz, M. Dondrup, R. Eichenlaub, K. - H. Gartemann, I. Krahn, L. Krause, H. Kroemeke, O. Kruse, et al., “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”, Journal of Biotechnology, 2008, 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
A. Tauch, E. Trost, A. Tilker, U. Ludewig, S. Schneiker-Bekel, A. Goesmann, W. Arnold, T. Bekel, K. Brinkrolf, I. Brune, et al., “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”, Journal of Biotechnology, 2008, 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
S. Oehm, D. Gilbert, A. Tauch, J. Stoye, and A. Goesmann, “Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms”, NUCLEIC ACIDS RESEARCH, 2008, 36, W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[35]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
A. Tauch, J. Schneider, R. Szczepanowski, A. Tilker, P. Viehöver, K. - H. Gartemann, W. Arnold, J. Blom, K. Brinkrolf, I. Brune, et al., “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”, Journal of Biotechnology, 2008, 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[34]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
L. Krause, N. N. Diaz, A. Goesmann, S. Kelley, T. W. Nattkemper, F. Rohwer, R. A. Edwards, and J. Stoye, “Phylogenetic classification of short environmental DNA fragments”, Nucleic Acids Research, 2008, 36, 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
S. Albaum, H. Neuweger, S. Lange, D. Mertens, K. Runte, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, in HUPO 7th Annual World Congress, 2008.
PUB
 
[32]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
E. Strauch, J. A. Hammerl, A. Konietzny, S. Schneiker-Bekel, W. Arnold, A. Goesmann, A. Pühler, and L. Beutin, “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”, Infection and Immunity, 2008, 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
C. Meisinger-Henschel, M. Schmidt, S. Lukassen, B. Linke, L. Krause, S. Konietzny, A. Goesmann, P. Howley, P. Chaplin, M. Suter, et al., “Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara”, JOURNAL OF GENERAL VIROLOGY, 2007, 88, 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
H. Neuweger, J. Baumbach, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Kalinowski, S. Oehm, A. Pühler, S. Rahmann, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, 2007, 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
S. Schneiker-Bekel, O. Perlova, O. Kaiser, K. Gerth, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, E. Bode, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, 2007, 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
M. A. Moran, R. Belas, M. A. Schell, J. M. Gonzalez, F. Sun, S. Sun, B. J. Binder, J. Edmonds, W. Ye, B. Orcutt, et al., “Ecological genomics of marine roseobacters”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73, 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
U. Wegmann, M. O'Connell-Motherwy, A. Zomer, G. Buist, C. Shearman, C. Canchaya, M. Ventura, A. Goesmann, M. J. Gasson, O. P. Kuipers, et al., “Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363”, JOURNAL OF BACTERIOLOGY, 2007, 189, 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
M. I. Bahl, L. H. Hansen, A. Goesmann, and S. J. Sorensen, “The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups”, PLASMID, 2007, 58, 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
S. Schneiker-Bekel, V. A. P. M. dos Santos, D. Bartels, T. Bekel, M. Brecht, J. Buhrmester, T. N. Chernikova, R. Denaro, M. Ferrer, C. Gertler, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, 2006, 24, 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354
N. Hohnjec, K. Henckel, T. Bekel, J. Gouzy, M. Dondrup, A. Goesmann, and H. Küster, “Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula”, FUNCTIONAL PLANT BIOLOGY, 2006, 33, 737-748.
PUB | PDF | DOI | WoS
 
[22]
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017
C. Schoen, H. Claus, A. Goesmann, T. Mueller, P. Brandt, I. Otto-Karg, A. Schramm-Glueck, U. Vogel, and M. Frosch, “Genome comparison of non-pathogenic and pathogenic meningococci”, INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 2006, 296, 134.
PUB | WoS
 
[21]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
A. Tauch, E. Trost, T. Bekel, A. Goesmann, U. Ludewig, and A. Pühler, “Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System”, Biochemica, 2006, 4, 4-6.
PUB
 
[20]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
A. Krause, A. Ramakumar, D. Bartels, F. Battistoni, T. Bekel, J. Boch, M. Boehm, F. Friedrich, T. Hurek, L. Krause, et al., “Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72”, Nature Biotechnology, 2006, 24, 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
T. Hain, C. Steinweg, C. T. Kuenne, A. Billion, R. Ghai, S. S. Chatterjee, E. Domann, U. Kaerst, A. Goesmann, T. Bekel, et al., “Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes”, Journal of Bacteriology, 2006, 188, 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
D. Bartels, S. Kespohl, S. Albaum, T. Drüke, A. Goesmann, J. Herold, O. Kaiser, A. Pühler, F. Pfeiffer, G. Raddatz, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, 2005, 21, 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[17]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
F. Thieme, R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Buttner, C. Caldana, L. Gaigalat, A. Goesmann, S. Kay, et al., “Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence”, JOURNAL OF BACTERIOLOGY, 2005, 187, 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652
R. Overbeek, T. Begley, R. M. Butler, J. V. Choudhuri, H. - Y. Chuang, M. Cohoon, V. de Crécy-Lagard, N. N. Diaz, T. Disz, R. Edwards, et al., “The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes”, Nucleic Acids Research, 2005, 33, 5691-5702.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
A. Tauch, O. Kaiser, T. Hain, A. Goesmann, B. Weisshaar, A. Albersmeier, T. Bekel, N. Bischoff, I. Brune, T. Chakraborty, et al., “Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora”, Journal of Bacteriology, 2005, 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[14]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644
A. Goesmann, B. Linke, D. Bartels, M. Dondrup, L. Krause, H. Neuweger, S. Oehm, T. Paczian, A. Wilke, and F. Meyer, “BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser”, Nucleic Acids Research, 2005, 33, W710-W716.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2004 | Bielefelder E-Dissertation | PUB-ID: 2301314
A. Goesmann, BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations, Bielefeld University, Bielefeld (Germany), 2004.
PUB | PDF
 
[12]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
J. Westberg, A. Persson, A. Holmberg, A. Goesmann, J. Lundeberg, K. E. Johansson, B. Pettersson, and M. Uhlen, “The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP)”, GENOME RESEARCH, 2004, 14, 221-227.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
S. Rendulic, P. Jagtap, A. Rosinus, M. Eppinger, C. Baar, C. Lanz, H. Keller, C. Lambert, K. J. Evans, A. Goesmann, et al., “A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective”, SCIENCE, 2004, 303, 689-692.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
R. Szczepanowski, I. Krahn, B. Linke, A. Goesmann, A. Pühler, and A. Schlüter, “Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system”, Microbiology, 2004, 150, 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[9]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
A. C. McHardy, A. Goesmann, A. Pühler, and F. Meyer, “Development of joint application strategies for two microbial gene finders”, BIOINFORMATICS, 2004, 20, 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
A. Goesmann, B. Linke, O. Rupp, L. Krause, D. Bartels, M. Dondrup, A. C. McHardy, A. Wilke, A. Pühler, and F. Meyer, “Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
O. Kaiser, D. Bartels, T. Bekel, A. Goesmann, S. Kespohl, A. Pühler, and F. Meyer, “Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
M. Dondrup, A. Goesmann, D. Bartels, J. Kalinowski, L. Krause, B. Linke, O. Rupp, A. Sczyrba, A. Pühler, and F. Meyer, “EMMA: a platform for consistent storage and efficient analysis of microarray data”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
A. Wilke, C. Rückert, D. Bartels, M. Dondrup, A. Goesmann, A. T. Hüser, S. Kespohl, B. Linke, M. Mahne, A. McHardy, et al., “Bioinformatics support for high-throughput proteomics”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
A. Tauch, A. Schlüter, N. Bischoff, A. Goesmann, F. Meyer, and A. Pühler, “The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family”, Molecular Genetics and Genomics, 2003, 268, 570-584.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[3]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
F. Meyer, A. Goesmann, A. C. McHardy, D. Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O. Rupp, R. Giegerich, et al., “GenDB - an open source genome annotation system for prokaryote genomes”, Nucleic Acids Research, 2003, 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[2]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
J. Kalinowski, B. Bathe, D. Bartels, N. Bischoff, M. Bott, A. Burkovski, N. Dusch, L. Eggeling, B. J. Eikmanns, L. Gaigalat, et al., “The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins”, Journal of Biotechnology, 2003, 104, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[1]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
A. Goesmann, M. Haubrock, F. Meyer, J. Kalinowski, and R. Giegerich, “PathFinder: reconstruction and dynamic visualization of metabolic pathways”, BIOINFORMATICS, 2002, 18, 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 

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[155]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919320
S. D. Cardoso, D. Goncalves, A. Goesmann, A. V. M. Canario, and R. F. Oliveira, “Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish”, MOLECULAR ECOLOGY, 2018, 27, 789-803.
PUB | DOI | WoS | PubMed | Europe PMC
 
[154]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916526
O. V. Golyshina, H. Tran, O. N. Reva, S. Lemak, A. F. Yakunin, A. Goesmann, T. Y. Nechitaylo, V. LaCono, F. Smedile, A. Slesarev, et al., “Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum Y-T”, SCIENTIFIC REPORTS, 2017, 7, : 3682.
PUB | DOI | WoS | PubMed | Europe PMC
 
[153]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
O. Blifernez-Klassen, D. Wibberg, A. Winkler, J. Blom, A. Goesmann, J. Kalinowski, and O. Kruse, “Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)”, Genome Announcements, 2016, 4, : e00524-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[152]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
M. Arnold, D. Wibberg, J. Blom, S. Schatschneider, A. Winkler, Y. Kutter, C. Rückert, A. Albersmeier, S. Albaum, A. Goesmann, et al., “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”, Genome announcements, 2015, 3.
PUB | DOI | WoS | PubMed | Europe PMC
 
[151]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
O. Rupp, K. Brinkrolf, C. Buerth, M. Kunigo, J. Schneider, S. Jaenicke, A. Goesmann, A. Pühler, K. - E. Jaeger, and J. F. Ernst, “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, 2015, 211, 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[150]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131
M. Pauli, N. Chakarov, O. Rupp, J. Kalinowski, A. Goesmann, M. Sorenson, O. Krüger, and J. Hoffman, “De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite”, BMC Genomics, 2015, 16, : 1038.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[149]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279
S. Huja, Y. Oren, E. Trost, E. Brzuszkiewicz, D. Biran, J. Blom, A. Goesmann, G. Gottschalk, J. Hacker, E. Z. Ron, et al., “Genomic Avenue to Avian Colisepticemia”, mBio, 2015, 6, : e01681-14.
PUB | DOI | WoS | PubMed | Europe PMC
 
[148]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2730423
N. Chakarov, B. Linke, M. Boerner, A. Goesmann, O. Krüger, and J. Hoffman, “Apparent vector-mediated parent-to-offspring transmission in an avian malaria-like parasite”, Molecular Ecology, 2015, 24, 1355-1363.
PUB | DOI | WoS | PubMed | Europe PMC
 
[147]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694652
A. Bonte, H. Neuweger, A. Goesmann, C. Thonar, P. Mäder, G. Langenkämper, and K. Niehaus, “Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems”, Journal of the science of food and agriculture, 2014, 94, 2605-2612.
PUB | DOI | WoS | PubMed | Europe PMC
 
[146]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2690174
G. Christiansen, A. Goesmann, and R. Kurmayer, “Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium planktothrix”, Applied and environmental microbiology, 2014, 80, 4887-4897.
PUB | DOI | WoS | PubMed | Europe PMC
 
[145]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552
J. Becker, C. Timmermann, O. Rupp, S. Albaum, K. Brinkrolf, A. Goesmann, A. Pühler, A. Tauch, and T. Noll, “Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.)”, Journal of biotechnology, 2014, 178, 23-31.
PUB | DOI | WoS | PubMed | Europe PMC
 
[144]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773
O. Rupp, J. Becker, K. Brinkrolf, C. Timmermann, N. Borth, A. Pühler, T. Noll, and A. Goesmann, “Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines”, PLoS ONE, 2014, 9, e85568.
PUB | DOI | WoS | PubMed | Europe PMC
 
[143]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694682
U. Wegmann, P. Louis, A. Goesmann, B. Henrissat, S. H. Duncan, and H. J. Flint, “Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans”, Environmental microbiology, 2014, 16, 2879-2890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[142]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
J. C. Dohm, A. E. Minoche, D. Holtgräwe, S. Capella-Gutiérrez, F. Zakrzewski, H. Tafer, O. Rupp, T. Rosleff Sörensen, R. Stracke, R. Reinhardt, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, 2014, 505, 546-549.
PUB | DOI | WoS | PubMed | Europe PMC
 
[141]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
P. Tielen, D. Wibberg, J. Blom, N. Rosin, A. - K. Meyer, B. Bunk, M. Schobert, R. Tüpker, S. Schatschneider, C. Rückert, et al., “Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection”, Genome announcements, 2014, 2.
PUB | DOI | PubMed | Europe PMC
 
[140]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2664976
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, N. Fischer, A. Steinkämper, A. Pühler, R. Biener, D. Schwartz, and J. Kalinowski, “Complete Genome Sequence of the Actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin”, Journal of biotechnology, 2014, 178, 41-42.
PUB | DOI | WoS | PubMed | Europe PMC
 
[139]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, K. Sahm, A. Basner, S. Wiebusch, P. John, U. Lorenz, A. Peters, F. Abe, K. Takahashi, O. Kaiser, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, 2014, 18, 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
[138]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908
D. Wibberg, L. Jelonek, O. Rupp, M. Kröber, F. G. Eikmeyer, A. Goesmann, A. Hartmann, R. Borriss, R. Grosch, A. Pühler, et al., “Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14”, Journal of Biotechnology, 2013, 167, 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[137]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
T. H. M. Smits, F. Rezzonico, M. M. López, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics”, Systematic and applied microbiology, 2013, 36, 449-456.
PUB | DOI | WoS | PubMed | Europe PMC
 
[136]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943
M. Vences, S. Hauswaldt, S. Steinfartz, O. Rupp, A. Goesmann, S. Künzel, P. Orozco-Terwengel, D. R. Vieites, S. Nieto-Roman, S. Haas, et al., “Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana”, Molecular phylogenetics and evolution, 2013, 68, 657-670.
PUB | DOI | WoS | PubMed | Europe PMC
 
[135]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, 2013, 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2632946
K. A. K. Köhler, C. Rückert, S. Schatschneider, F. - J. Vorhölter, R. Szczepanowski, L. M. Blank, K. Niehaus, A. Goesmann, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil”, Journal of Biotechnology, 2013, 168, 729-730.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
S. Barbe, P. Llop, J. Blom, J. Cabrefiga, A. Goesmann, B. Duffy, E. Montesinos, T. H. M. Smits, and M. M. Lopez, “Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence”, Plant Pathology, 2013, 62, 786-798.
PUB | DOI | WoS
 
[132]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581
K. Brinkrolf, O. Rupp, H. Laux, F. Kollin, W. Ernst, B. Linke, R. Kofler, S. Romand, F. Hesse, W. E. Budach, et al., “Chinese hamster genome sequenced from sorted chromosomes”, Nature Biotechnology, 2013, 31, 694-695.
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2564601
T. Riedel, L. Gómez-Consarnau, J. Tomasch, M. Martin, M. Jarek, J. M. González, S. Spring, M. Rohlfs, T. Brinkhoff, H. Cypionka, et al., “Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein”, PLOS ONE, 2013, 8, e57487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[130]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560837
M. Fritzenwanker, C. Kuenne, A. Billion, T. Hain, K. Zimmermann, A. Goesmann, T. Chakraborty, and E. Domann, “Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431”, Genome Announcements, 2013, 1, e00165-12.
PUB | DOI | PubMed | Europe PMC
 
[129]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576080
J. Toepel, M. Illmer-Kephalides, S. Jaenicke, J. Straube, P. May, A. Goesmann, and O. Kruse, “New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics”, Plant Biotechnology Journal, 2013, 11, 717-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631956
C. Rückert, R. Szczepanowski, A. Albersmeier, A. Goesmann, D. Iftime, E. M. Musiol, K. Blin, W. Wohlleben, A. Pühler, J. Kalinowski, et al., “Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids”, Journal of Biotechnology, 2013, 168, 739-740.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[126]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
R. A. Mann, T. H. M. Smits, A. Bühlmann, J. Blom, A. Goesmann, J. E. Frey, K. M. Plummer, S. V. Beer, J. Luck, B. Duffy, et al., “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”, PLOS ONE, 2013, 8, e55644.
PUB | DOI | WoS | PubMed | Europe PMC
 
[125]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2554079
C. Kuenne, A. Billion, M. A. Mraheil, A. Strittmatter, R. Daniel, A. Goesmann, S. Barbuddhe, T. Hain, and T. Chakraborty, “Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome”, BMC Genomics, 2013, 14, 47.
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668
C. Bogen, A. Al-Dilaimi, A. Albersmeier, J. Wichmann, M. Grundmann, O. Rupp, K. J. Lauersen, O. Blifernez-Klassen, J. Kalinowski, A. Goesmann, et al., “Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production”, BMC Genomics, 2013, 14, 926.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[123]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2610129
N. Kessler, A. Bonte, G. Langenkämper, K. Niehaus, A. Goesmann, and T. W. Nattkemper, “MeltDB 2.0 - Advances of the metabolomics software system”, Bioinformatics, 2013, 29, 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
[122]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Konferenzbeitrag | Im Druck | PUB-ID: 2538625
A. Bonte, N. Kessler, T. W. Nattkemper, A. Goesmann, T. Cecile, P. Mäder, K. Niehaus, and G. Langenkämper, In Press.
PUB
 
[120]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2484618
M. Zakrzewski, A. Goesmann, S. Jaenicke, S. Jünemann, F. G. Eikmeyer, R. Szczepanowski, W. A. Al-Soud, S. Sørensen, A. Pühler, and A. Schlüter, “Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing”, Journal of Biotechnology, 2012, 158, 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[119]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500990
M. T. Rose, T. J. Rose, J. Pariasca-Tanaka, T. Yoshihashi, H. Neuweger, A. Goesmann, M. Frei, and M. Wissuwa, “Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess”, Planta, 2012, 236, 959-973.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, K. Zimmermann, J. Blom, A. Goesmann, C. Pohlmann, and F. Gunzer, “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, 2012, 7, e33351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471858
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2012, 7.
PUB | DOI | PubMed | Europe PMC
 
[116]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
S. Heinl, D. Wibberg, F. G. Eikmeyer, R. Szczepanowski, J. Blom, B. Linke, A. Goesmann, R. Grabherr, H. Schwab, A. Pühler, et al., “Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage”, Journal of Biotechnology, 2012, 161, 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
[115]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2471681
A. Rademacher, M. Zakrzewski, A. Schlüter, M. Schonberg, R. Szczepanowski, A. Goesmann, A. Pühler, and M. Klocke, “Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing”, FEMS Microbiology Ecology, 2012, 79, 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
[114]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
M. Filippini, W. Qi, J. Blom, A. Goesmann, T. H. M. Smits, and H. C. Bagheri, “Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium”, Journal of bacteriology, 2012, 194, 3555.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232
C. Trötschel, S. Albaum, D. Wolff, S. Schröder, A. Goesmann, T. W. Nattkemper, and A. Poetsch, “Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation”, Molecular & Cellular Proteomics, 2012, 11, 512-526.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[112]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars”, International journal of food microbiology, 2012, 155, 247-256.
PUB | DOI | WoS | PubMed | Europe PMC
 
[111]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002
J. Schneider, O. Rupp, E. Trost, S. Jaenicke, V. Passoth, A. Goesmann, A. Tauch, and K. Brinkrolf, “Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities”, FEMS Yeast Research, 2012, 12, 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526
M. Hackl, V. Jadhav, T. Jakobi, O. Rupp, K. Brinkrolf, A. Goesmann, A. Pühler, T. Noll, N. Borth, and J. Grillari, “Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines”, Journal of Biotechnology, 2012, 158, 151-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[109]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2405255
M. Persicke, C. Rückert, J. Plassmeier, L. Stutz, N. Kessler, J. Kalinowski, A. Goesmann, and H. Neuweger, “MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example”, Metabolomics, 2012, 8, 310-322.
PUB | DOI | WoS
 
[108]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500959
T. Kahlke, A. Goesmann, E. Hjerde, N. P. Willassen, and P. Haugen, “Unique core genomes of the bacterial family vibrionaceae: Insights into niche adaptation and speciation”, BMC genomics, 2012, 13, 179.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500966
T. Hain, R. Ghai, A. Billion, C. T. Kuenne, C. Steinweg, B. Izar, W. Mohamed, M. Mraheil, E. Domann, S. Schaffrath, et al., “Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes”, BMC Genomics, 2012, 13, 144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
J. Schneider, H. Andrea, J. Blom, S. Jaenicke, C. Rückert, C. Schorsch, R. Szczepanowski, M. Farwick, A. Goesmann, A. Pühler, et al., “Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10”, Eukaryotic Cell, 2012, 11, 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500937
F. Rezzonico, A. Braun-Kiewnick, R. A. Mann, B. Rodoni, A. Goesmann, B. Duffy, and T. H. M. Smits, “Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora”, Molecular plant pathology, 2012, 13, 975-984.
PUB | DOI | WoS | PubMed | Europe PMC
 
[104]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
P. De Maayer, W. Y. Chan, F. Rezzonico, A. Bühlmann, S. N. Venter, J. Blom, A. Goesmann, J. E. Frey, T. H. M. Smits, B. Duffy, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, 2012, 194, 1615-1616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[103]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
S. Schork, A. Schlüter, J. Blom, S. Schneiker-Bekel, A. Pühler, A. Goesmann, M. Frosch, and C. Schoen, “Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198”, Journal of Bacteriology, 2012, 194, 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, C. Kuenne, J. Blom, P. W. Dabrowski, B. Linke, T. Hain, A. Nitsche, A. Goesmann, J. Larsen, L. B. Jensen, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, 2012, 194, 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, K. Prior, R. Szczepanowski, I. Harks, B. Ehmke, A. Goesmann, J. Stoye, and D. Harmsen, “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, 2012, 7, e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
R. A. Mann, J. Blom, A. Bühlmann, K. M. Plummer, S. V. Beer, J. E. Luck, A. Goesmann, J. E. Frey, B. C. Rodoni, B. Duffy, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, 2012, 504, 6-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063
S. Albaum, H. Hahne, A. Otto, U. Haußmann, D. Becher, A. Poetsch, A. Goesmann, and T. W. Nattkemper, “A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study”, Proteome Science, 2011, 9, 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[98]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800
J. Toepel, S. Albaum, S. Arvidsson, A. Goesmann, M. La Russa, K. Rogge, and O. Kruse, “Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii”, BMC Genomics, 2011, 12, 579-589.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[97]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J. F. Pothier, F. - J. Vorhölter, J. Blom, A. Goesmann, A. Pühler, T. H. Smits, and B. Duffy, “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, 2011, 323, 52-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[96]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, J. Blom, S. Jaenicke, F. Kollin, O. Rupp, B. Scharf, S. Schneiker-Bekel, R. Szczepanowski, A. Goesmann, J. C. Setubal, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, 2011, 155, 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[95]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371
A. Küberl, J. Schneider, G. G. Thallinger, I. Anderl, D. Wibberg, T. Hajek, S. Jaenicke, K. Brinkrolf, A. Goesmann, R. Szczepanowski, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, 2011, 154, 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576
J. Becker, M. Hackel, T. Jakobi, O. Rupp, J. Schneider, R. Szczepanowski, T. Bekel, N. Borth, A. Goesmann, J. Grillari, et al., “Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing”, Journal of Biotechnology, 2011, 156, 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289576
V. Thomas, C. Bertelli, F. Collyn, N. Casson, A. Telenti, A. Goesmann, A. Croxatto, and G. Greub, “Lausannevirus, a giant amoebal virus encoding histone doublets”, Environmental Microbiology, 2011, 13, 1454-1466.
PUB | DOI | WoS | PubMed | Europe PMC
 
[92]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2411830
L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-Mulec, “Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes”, PLoS ONE, 2011, 6, : e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
[91]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, J. Blom, S. Jaenicke, B. Linke, K. Brinkrolf, H. Neuweger, A. Tauch, and A. Goesmann, “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, 2011, 155, 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2447730
J. M. Gonzalez, J. Pinhassi, B. Fernández-Gómez, M. Coll-Llado, M. Gonzalez-Velazquez, P. Puigbo, S. Jaenicke, L. Gomez-Consarnau, A. Fernandez-Guerra, A. Goesmann, et al., “Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. MED134”, Applied and Environmental Microbiology, 2011, 77, 8676-8686.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, C. A. Ishimaru, J. E. Frey, V. O. Stockwell, and B. Duffy, “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, 2011, 6, e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, J. Blom, J. Winnebald, A. Berhoerster, M. J. Barnett, A. Goesmann, J. Baumbach, and A. Becker, “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, 2011, 155, 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768
J. Becker, C. Timmermann, T. Jakobi, O. Rupp, R. Szczepanowski, M. Hackl, A. Goesmann, A. Tauch, N. Borth, J. Grillari, et al., “Next-generation sequencing of the CHO cell transcriptome”, BMC Proceedings, 2011, 5, P6.
PUB | DOI
 
[86]
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2397780
D. Doppmeier, R. Stracke, P. Lutter, A. Goesmann, K. Niehaus, and B. Weisshaar, 2011, p. 218.
PUB
 
[85]
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2447751
S. Jaenicke, M. Zakrzewski, S. Jünemann, A. Pühler, A. Goesmann, and A. Schlüter, in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (Ed.: F.J. de Bruijn), Wiley-Blackwell, 2011, p. 403-414.
PUB | DOI
 
[84]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, R. F. Schwarz, B. Linke, J. Blom, A. Becker, H. Claus, A. Goesmann, M. Frosch, T. Mueller, U. Vogel, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, 2011, 6, e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, J. Weber-Lehmann, J. Blom, B. Joseph, A. Goesmann, A. Strittmatter, and M. Frosch, “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, 2011, 193, 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902
T. B. De Gregoris, O. Rupp, S. Klages, F. Knaust, T. Bekel, M. Kube, J. G. Burgess, M. I. Arnone, A. Goesmann, R. Reinhardt, et al., “Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite”, Biofouling, 2011, 27, 367-374.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, T. Jakobi, D. Doppmeier, S. Jaenicke, J. Kalinowski, J. Stoye, and A. Goesmann, “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, 2011, 27, 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
[80]
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, D. Wibberg, T. Bekel, J. Blom, B. Linke, H. Neuweger, M. Stiens, F. - J. Vorhölter, S. Weidner, A. Goesmann, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, In Press, 155, 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276
S. Jaenicke, C. Ander, T. Bekel, R. Bisdorf, M. Dröge, K. - H. Gartemann, S. Jünemann, O. Kaiser, L. Krause, F. Tille, et al., “Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing”, PLoS ONE, 2011, 6, e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[78]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, T. Jakobi, J. Blom, D. Doppmeier, K. Brinkrolf, R. Szczepanowski, S. H. Bernhart, C. Höner zu Siederdissen, J. A. H. Bort, M. Wieser, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, 2011, 153, 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
I. Margaret, A. Becker, J. Blom, I. Bonilla, A. Goesmann, M. Göttfert, J. Lloret, V. Mittard-Runte, C. Rückert, J. - E. Ruiz-Sainz, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, 2011, 155, 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[76]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093578
B. Linke, R. Giegerich, and A. Goesmann, “Conveyor: a workflow engine for bioinformatic analyses”, Bioinformatics, 2011, 27, 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
K. Brankatschk, J. Blom, A. Goesmann, T. H. M. Smits, and B. Duffy, “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”, Journal of Bacteriology, 2011, 193, 2066.
PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
J. Schneider, F. - J. Vorhölter, E. Trost, J. Blom, Y. R. Musa, H. Neuweger, K. Niehaus, S. Schatschneider, A. Tauch, and A. Goesmann, “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, 2010, 9, 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[73]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
E. Trost, L. Ott, J. Schneider, J. Schröder, S. Jaenicke, A. Goesmann, P. Husemann, J. Stoye, F. Alves Dorella, F. Souza Rocha, et al., “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”, BMC Genomics, 2010, 11, : 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795508
C. Bertelli, F. Collyn, A. Croxatto, C. Rückert, A. Polkinghorne, C. Kebbi-Beghdadi, A. Goesmann, L. Vaughan, and G. Greub, “The Waddlia Genome: A Window into Chlamydial Biology”, PLOS ONE, 2010, 5, e10890.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795628
T. H. M. Smits, F. Rezzonico, C. Pelludat, A. Goesmann, J. E. Frey, and B. Duffy, “Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3”, FEMS MICROBIOLOGY LETTERS, 2010, 308, 48-54.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275
E. Trost, S. Götker, J. Schneider, S. Schneiker-Bekel, R. Szczepanowski, A. Tilker, P. Viehöver, W. Arnold, T. Bekel, J. Blom, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, 2010, 11, : 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[69]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785504
I. Yang, U. John, S. Beszteri, G. Glöckner, B. Krock, A. Goesmann, and A. D. Cembella, “Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum”, BMC Genomics, 2010, 11, 248.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[68]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
T. H. M. Smits, F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy, “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”, MOLECULAR PLANT-MICROBE INTERACTIONS, 2010, 23, 384-393.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
V. Mittard-Runte, T. Bekel, J. Blom, M. Dondrup, K. Henckel, S. Jaenicke, L. Krause, B. Linke, H. Neuweger, S. Schneiker-Bekel, et al., in Introduction to Marine Genomics (Advances in Marine Genomics) (Eds.: J.M. Cock, K. Tessmar-Raible, C. Boyen, F. Viard), Springer Netherlands, Netherlands, 2010, p. 315-396.
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[66]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796644
T. H. M. Smits, S. Jaenicke, F. Rezzonico, T. Kamber, A. Goesmann, J. E. Frey, and B. Duffy, “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”, BMC Genomics, 2010, 11, 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[65]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785579
M. Farnbacher, T. Jahns, D. Willrodt, R. Daniel, R. Haas, A. Goesmann, S. Kurtz, and G. Rieder, “Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8”, BMC Genomics, 2010, 11, 335.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588692
C. Steinweg, C. T. Kuenne, A. Billion, M. A. Mraheil, E. Domann, R. Ghai, S. B. Barbuddhe, U. Kaerst, A. Goesmann, A. Pühler, et al., “Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria”, Journal of Bacteriology, 2010, 192, 1473-1474.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794039
C. Kuenne, S. Voget, J. Pischimarov, S. Oehm, A. Goesmann, R. Daniel, T. Hain, and T. Chakraborty, “Comparative Analysis of Plasmids in the Genus Listeria”, PLOS ONE, 2010, 5, e12511.
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894319
K. Henckel, H. Küster, L. Stutz, and A. Goesmann, “MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.”, BMC Research Notes, 2010, 3, 262.
PUB | PDF | DOI | PubMed | Europe PMC
 
[61]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1968262
T. H. M. Smits, F. Rezzonico, T. Kamber, A. Goesmann, C. A. Ishimaru, V. O. Stockwell, J. E. Frey, and B. Duffy, “Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1”, Journal of Bacteriology, 2010, 192, 6486-6487.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990186
N. Gehlenborg, S. I. O'Donoghue, N. S. Baliga, A. Goesmann, M. A. Hibbs, H. Kitano, O. Kohlbacher, H. Neuweger, R. Schneider, D. Tenenbaum, et al., “Visualization of omics data for systems biology”, Nat Methods, 2010, 7, S56-S68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
B. Joseph, S. Schneiker-Bekel, A. Schramm-Glueck, J. Blom, H. Claus, B. Linke, R. F. Schwarz, A. Becker, A. Goesmann, M. Frosch, et al., “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”, JOURNAL OF BACTERIOLOGY, 2010, 192, 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2397394
A. Goesmann, J. Schneider, E. Trost, and A. Tauch, “Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren”, BIOspektrum, 2009, 15, 279-281.
PUB
 
[57]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783022
J. Krawczyk, A. Goesmann, R. Nolte, M. Werber, and B. Weisshaar, “Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format”, Source Code for Biology and Medicine, 2009, 4, 4.
PUB | PDF | DOI | PubMed | Europe PMC
 
[56]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813
H. Neuweger, M. Persicke, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Winnebald, J. Schneider, J. Kalinowski, and A. Goesmann, “Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example”, BMC Systems Biology, 2009, 3, : 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[55]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. - J. Vorhölter, M. Zakrzewski, and A. Goesmann, “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, 2009, 10, : 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[54]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300
K. Henckel, K. J. Runte, T. Bekel, M. Dondrup, T. Jakobi, H. Küster, and A. Goesmann, “TRUNCATULIX - a data warehouse for the legume community”, BMC Plant Biology, 2009, 9, 19.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634097
A. W. Strittmatter, H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R. Martinez-Arias, D. Bartels, et al., “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”, ENVIRONMENTAL MICROBIOLOGY, 2009, 11, 1038-1055.
PUB | DOI | WoS | PubMed | Europe PMC
 
[52]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634467
A. Becker, M. J. Barnett, D. Capela, M. Dondrup, P. - B. Kamp, E. Krol, B. Linke, S. Rüberg, K. Runte, B. K. Schroeder, et al., “A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 45-50.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
N. N. Diaz, L. Krause, A. Goesmann, K. Niehaus, and T. W. Nattkemper, “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, 2009, 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[50]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
M. Dondrup, S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C. K. Kleindt, H. Kuester, B. Linke, D. Mertens, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, 2009, 10, : 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[49]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
W. Gerlach, S. Jünemann, F. Tille, A. Goesmann, and J. Stoye, “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, 2009, 10, 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[48]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, H. Neuweger, B. Fraenzel, S. Lange, D. Mertens, C. Troetschel, D. Wolters, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, 2009, 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589936
U. Wegmann, K. Overweg, N. Horn, A. Goesmann, A. Narbad, M. J. Gasson, and C. Shearman, “Complete Genome Sequence of Lactobacillus johnsonii FI9785, a Competitive Exclusion Agent against Pathogens in Poultry”, JOURNAL OF BACTERIOLOGY, 2009, 191, 7142-7143.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[45]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634461
M. Dondrup, A. T. Hueser, D. Mertens, and A. Goesmann, “An evaluation framework for statistical tests on microarray data”, JOURNAL OF BIOTECHNOLOGY, 2009, 140, 18-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
[44]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
H. Neuweger, S. Albaum, M. Dondrup, M. Persicke, T. Watt, K. Niehaus, J. Stoye, and A. Goesmann, “MeltDB: a software platform for the analysis and integration of metabolomics experiment data”, Bioinformatics, 2008, 24, 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[43]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783292
R. Gross, C. A. Guzman, M. Sebaihia, V. A. P. Martins dos Santos, D. H. Pieper, R. Koebnik, M. Lechner, D. Bartels, J. Buhrmester, J. V. Choudhuri, et al., “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”, BMC Genomics, 2008, 9, 449.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024
F. - J. Vorhölter, S. Schneiker-Bekel, A. Goesmann, L. Krause, T. Bekel, O. Kaiser, B. Linke, T. Patschkowski, C. Rückert, J. Schmid, et al., “The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis”, Journal of Biotechnology, 2008, 134, 33-45.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
C. Schoen, J. Blom, H. Claus, A. Schramm-Glueck, P. Brandt, T. Mueller, A. Goesmann, B. Joseph, S. Konietzny, O. Kurzai, et al., “Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis”, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105, 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[40]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
L. Krause, N. N. Diaz, R. A. Edwards, K. - H. Gartemann, H. Krömeke, H. Neuweger, A. Pühler, K. J. Runte, A. Schlüter, J. Stoye, et al., “Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor”, JOURNAL OF BIOTECHNOLOGY, 2008, 136, 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956
M. Stiens, A. Becker, T. Bekel, V. Gödde, A. Goesmann, K. Niehaus, S. Schneiker-Bekel, W. Selbitschka, S. Weidner, A. Schlüter, et al., “Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11”, Journal of Biotechnology, 2008, 136, 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987
A. Schlüter, T. Bekel, N. N. Diaz, M. Dondrup, R. Eichenlaub, K. - H. Gartemann, I. Krahn, L. Krause, H. Kroemeke, O. Kruse, et al., “The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology”, Journal of Biotechnology, 2008, 136, 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918
A. Tauch, E. Trost, A. Tilker, U. Ludewig, S. Schneiker-Bekel, A. Goesmann, W. Arnold, T. Bekel, K. Brinkrolf, I. Brune, et al., “The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing”, Journal of Biotechnology, 2008, 136, 11-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
S. Oehm, D. Gilbert, A. Tauch, J. Stoye, and A. Goesmann, “Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms”, NUCLEIC ACIDS RESEARCH, 2008, 36, W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[35]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
A. Tauch, J. Schneider, R. Szczepanowski, A. Tilker, P. Viehöver, K. - H. Gartemann, W. Arnold, J. Blom, K. Brinkrolf, I. Brune, et al., “Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids”, Journal of Biotechnology, 2008, 136, 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[34]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
L. Krause, N. N. Diaz, A. Goesmann, S. Kelley, T. W. Nattkemper, F. Rohwer, R. A. Edwards, and J. Stoye, “Phylogenetic classification of short environmental DNA fragments”, Nucleic Acids Research, 2008, 36, 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
S. Albaum, H. Neuweger, S. Lange, D. Mertens, K. Runte, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, in HUPO 7th Annual World Congress, 2008.
PUB
 
[32]
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1990198
E. Strauch, J. A. Hammerl, A. Konietzny, S. Schneiker-Bekel, W. Arnold, A. Goesmann, A. Pühler, and L. Beutin, “Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7”, Infection and Immunity, 2008, 76, 5466-5477.
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
C. Meisinger-Henschel, M. Schmidt, S. Lukassen, B. Linke, L. Krause, S. Konietzny, A. Goesmann, P. Howley, P. Chaplin, M. Suter, et al., “Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara”, JOURNAL OF GENERAL VIROLOGY, 2007, 88, 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754
H. Neuweger, J. Baumbach, S. Albaum, T. Bekel, M. Dondrup, A. T. Hüser, J. Kalinowski, S. Oehm, A. Pühler, S. Rahmann, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, 2007, 1, 55.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
S. Schneiker-Bekel, O. Perlova, O. Kaiser, K. Gerth, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, E. Bode, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, 2007, 25, 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593149
M. A. Moran, R. Belas, M. A. Schell, J. M. Gonzalez, F. Sun, S. Sun, B. J. Binder, J. Edmonds, W. Ye, B. Orcutt, et al., “Ecological genomics of marine roseobacters”, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73, 4559-4569.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594098
U. Wegmann, M. O'Connell-Motherwy, A. Zomer, G. Buist, C. Shearman, C. Canchaya, M. Ventura, A. Goesmann, M. J. Gasson, O. P. Kuipers, et al., “Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp cremoris MG1363”, JOURNAL OF BACTERIOLOGY, 2007, 189, 3256-3270.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1593268
M. I. Bahl, L. H. Hansen, A. Goesmann, and S. J. Sorensen, “The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups”, PLASMID, 2007, 58, 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739
H. Küster, A. Becker, C. Firnhaber, N. Hohnjec, K. Manthey, A. M. Perlick, T. Bekel, M. Dondrup, K. Henckel, A. Goesmann, et al., “Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses”, Phytochemistry, 2007, 68, 19-32.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182
S. Schneiker-Bekel, V. A. P. M. dos Santos, D. Bartels, T. Bekel, M. Brecht, J. Buhrmester, T. N. Chernikova, R. Denaro, M. Ferrer, C. Gertler, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, 2006, 24, 997-1004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354
N. Hohnjec, K. Henckel, T. Bekel, J. Gouzy, M. Dondrup, A. Goesmann, and H. Küster, “Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula”, FUNCTIONAL PLANT BIOLOGY, 2006, 33, 737-748.
PUB | PDF | DOI | WoS
 
[22]
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1596017
C. Schoen, H. Claus, A. Goesmann, T. Mueller, P. Brandt, I. Otto-Karg, A. Schramm-Glueck, U. Vogel, and M. Frosch, “Genome comparison of non-pathogenic and pathogenic meningococci”, INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 2006, 296, 134.
PUB | WoS
 
[21]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701
A. Tauch, E. Trost, T. Bekel, A. Goesmann, U. Ludewig, and A. Pühler, “Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System”, Biochemica, 2006, 4, 4-6.
PUB
 
[20]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976
A. Krause, A. Ramakumar, D. Bartels, F. Battistoni, T. Bekel, J. Boch, M. Boehm, F. Friedrich, T. Hurek, L. Krause, et al., “Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72”, Nature Biotechnology, 2006, 24, 1385-1391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597316
T. Hain, C. Steinweg, C. T. Kuenne, A. Billion, R. Ghai, S. S. Chatterjee, E. Domann, U. Kaerst, A. Goesmann, T. Bekel, et al., “Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes”, Journal of Bacteriology, 2006, 188, 8299-8302.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302
D. Bartels, S. Kespohl, S. Albaum, T. Drüke, A. Goesmann, J. Herold, O. Kaiser, A. Pühler, F. Pfeiffer, G. Raddatz, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, 2005, 21, 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[17]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601712
F. Thieme, R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Buttner, C. Caldana, L. Gaigalat, A. Goesmann, S. Kay, et al., “Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence”, JOURNAL OF BACTERIOLOGY, 2005, 187, 7254-7266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773652
R. Overbeek, T. Begley, R. M. Butler, J. V. Choudhuri, H. - Y. Chuang, M. Cohoon, V. de Crécy-Lagard, N. N. Diaz, T. Disz, R. Edwards, et al., “The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes”, Nucleic Acids Research, 2005, 33, 5691-5702.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317
A. Tauch, O. Kaiser, T. Hain, A. Goesmann, B. Weisshaar, A. Albersmeier, T. Bekel, N. Bischoff, I. Brune, T. Chakraborty, et al., “Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora”, Journal of Bacteriology, 2005, 187, 4671-4682.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[14]
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773644
A. Goesmann, B. Linke, D. Bartels, M. Dondrup, L. Krause, H. Neuweger, S. Oehm, T. Paczian, A. Wilke, and F. Meyer, “BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser”, Nucleic Acids Research, 2005, 33, W710-W716.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2004 | Bielefelder E-Dissertation | PUB-ID: 2301314
A. Goesmann, BRIDGE : a bioinformatics software platform for the integration of heterogeneous data from genomic explorations, Bielefeld University, Bielefeld (Germany), 2004.
PUB | PDF
 
[12]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608756
J. Westberg, A. Persson, A. Holmberg, A. Goesmann, J. Lundeberg, K. E. Johansson, B. Pettersson, and M. Uhlen, “The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP)”, GENOME RESEARCH, 2004, 14, 221-227.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1608953
S. Rendulic, P. Jagtap, A. Rosinus, M. Eppinger, C. Baar, C. Lanz, H. Keller, C. Lambert, K. J. Evans, A. Goesmann, et al., “A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective”, SCIENCE, 2004, 303, 689-692.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1605656
R. Szczepanowski, I. Krahn, B. Linke, A. Goesmann, A. Pühler, and A. Schlüter, “Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system”, Microbiology, 2004, 150, 3613-3630.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[9]
2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607424
A. C. McHardy, A. Goesmann, A. Pühler, and F. Meyer, “Development of joint application strategies for two microbial gene finders”, BIOINFORMATICS, 2004, 20, 1622-1631.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609286
A. Goesmann, B. Linke, O. Rupp, L. Krause, D. Bartels, M. Dondrup, A. C. McHardy, A. Wilke, A. Pühler, and F. Meyer, “Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 157-167.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251
O. Kaiser, D. Bartels, T. Bekel, A. Goesmann, S. Kespohl, A. Pühler, and F. Meyer, “Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 121-133.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
M. Dondrup, A. Goesmann, D. Bartels, J. Kalinowski, L. Krause, B. Linke, O. Rupp, A. Sczyrba, A. Pühler, and F. Meyer, “EMMA: a platform for consistent storage and efficient analysis of microarray data”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 135-146.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609272
A. Wilke, C. Rückert, D. Bartels, M. Dondrup, A. Goesmann, A. T. Hüser, S. Kespohl, B. Linke, M. Mahne, A. McHardy, et al., “Bioinformatics support for high-throughput proteomics”, JOURNAL OF BIOTECHNOLOGY, 2003, 106, 147-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612324
A. Tauch, A. Schlüter, N. Bischoff, A. Goesmann, F. Meyer, and A. Pühler, “The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family”, Molecular Genetics and Genomics, 2003, 268, 570-584.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
 
[3]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880
F. Meyer, A. Goesmann, A. C. McHardy, D. Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O. Rupp, R. Giegerich, et al., “GenDB - an open source genome annotation system for prokaryote genomes”, Nucleic Acids Research, 2003, 31, 2187-2195.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[2]
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1895035
J. Kalinowski, B. Bathe, D. Bartels, N. Bischoff, M. Bott, A. Burkovski, N. Dusch, L. Eggeling, B. J. Eikmanns, L. Gaigalat, et al., “The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins”, Journal of Biotechnology, 2003, 104, 5-25.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[1]
2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1615366
A. Goesmann, M. Haubrock, F. Meyer, J. Kalinowski, and R. Giegerich, “PathFinder: reconstruction and dynamic visualization of metabolic pathways”, BIOINFORMATICS, 2002, 18, 124-129.
PUB | DOI | WoS | PubMed | Europe PMC
 

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