Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1
Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B (2011)
PLoS ONE 6(7): e22247.
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Autor*in
Smits, Theo H. M.;
Rezzonico, Fabio;
Kamber, Tim;
Blom, JochenUniBi;
Goesmann, AlexanderUniBi
;
Ishimaru, Carol A.;
Frey, Juerg E.;
Stockwell, Virginia O.;
Duffy, Brion
![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
Einrichtung
Abstract / Bemerkung
Background: Pantoea vagans is a commercialized biological control agent used against the pome fruit bacterial disease fire blight, caused by Erwinia amylovora. Compared to other biocontrol agents, relatively little is currently known regarding Pantoea genetics. Better understanding of antagonist mechanisms of action and ecological fitness is critical to improving efficacy. Principal Findings: Genome analysis indicated two major factors contribute to biocontrol activity: competition for limiting substrates and antibacterial metabolite production. Pathways for utilization of a broad diversity of sugars and acquisition of iron were identified. Metabolism of sorbitol by P. vagans C9-1 may be a major metabolic feature in biocontrol of fire blight. Biosynthetic genes for the antibacterial peptide pantocin A were found on a chromosomal 28-kb genomic island, and for dapdiamide E on the plasmid pPag2. There was no evidence of potential virulence factors that could enable an animal or phytopathogenic lifestyle and no indication of any genetic-based biosafety risk in the antagonist. Conclusions: Identifying key determinants contributing to disease suppression allows the development of procedures to follow their expression in planta and the genome sequence contributes to rationale risk assessment regarding the use of the biocontrol strain in agricultural systems.
Erscheinungsjahr
2011
Zeitschriftentitel
PLoS ONE
Band
6
Ausgabe
7
Art.-Nr.
e22247
ISSN
1932-6203
eISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2307104
Zitieren
Smits THM, Rezzonico F, Kamber T, et al. Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE. 2011;6(7): e22247.
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., et al. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE, 6(7), e22247. https://doi.org/10.1371/journal.pone.0022247
Smits, Theo H. M., Rezzonico, Fabio, Kamber, Tim, Blom, Jochen, Goesmann, Alexander, Ishimaru, Carol A., Frey, Juerg E., Stockwell, Virginia O., and Duffy, Brion. 2011. “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”. PLoS ONE 6 (7): e22247.
Smits, T. H. M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C. A., Frey, J. E., Stockwell, V. O., and Duffy, B. (2011). Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE 6:e22247.
Smits, T.H.M., et al., 2011. Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE, 6(7): e22247.
T.H.M. Smits, et al., “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, vol. 6, 2011, : e22247.
Smits, T.H.M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C.A., Frey, J.E., Stockwell, V.O., Duffy, B.: Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE. 6, : e22247 (2011).
Smits, Theo H. M., Rezzonico, Fabio, Kamber, Tim, Blom, Jochen, Goesmann, Alexander, Ishimaru, Carol A., Frey, Juerg E., Stockwell, Virginia O., and Duffy, Brion. “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”. PLoS ONE 6.7 (2011): e22247.
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Berner I, Konetschny-Rapp S, Jung G, Winkelmann G., 1988
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Jani AJ, Cotter PA., Cell Host Microbe 8(1), 2010
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Schwarz S, Hood RD, Mougous JD., Trends Microbiol. 18(12), 2010
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TCDB: the Transporter Classification Database for membrane transport protein analyses and information.
Saier MH Jr, Tran CV, Barabote RD., Nucleic Acids Res. 34(Database issue), 2006
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Coutinho TA, Venter SN., Mol. Plant Pathol. 10(3), 2009
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Genus XXIII. Pantoea.
Grimont PAD, Grimont F., 2005
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Effect of nectar on microbial antagonists evaluated for use in control of fire blight of pome fruits.
Pusey PL., Phytopathology 89(1), 1999
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Distribution of sorbitol in Rosaceae.
Wallaart RAM., 1980
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An Extracellular Protease of Pseudomonas fluorescens Inactivates Antibiotics of Pantoea agglomerans.
Anderson LM, Stockwell VO, Loper JE., Phytopathology 94(11), 2004
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Identification of carotenoids in Erwinia herbicola and in a transformed Escherichia coli strain.
Sandmann G, Woods WS, Tuveson RW., 1990
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Carotenoids 2: Genetics and molecular biology of carotenoid pigment biosynthesis.
Armstrong GA, Hearst JE., FASEB J. 10(2), 1996
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WITHHOLDING AND EXCHANGING IRON: Interactions Between Erwinia spp. and Their Plant Hosts.
Expert D., Annu Rev Phytopathol 37(), 1999
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Molecular recognition of siderophores: a study with cloned ferrioxamine receptors (FoxA) from Erwinia herbicola and Yersinia enterocolitica.
Deiss K, Hantke K, Winkelmann G., Biometals 11(2), 1998
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Quorum-sensing system affects gall development incited by Pantoea agglomerans pv. gypsophilae.
Chalupowicz L, Manulis-Sasson S, Itkin M, Sacher A, Sessa G, Barash I., Mol. Plant Microbe Interact. 21(8), 2008
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Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and description of Pantoea dispersa sp. nov.
Gavini F, Mergaert J, Beji A, Mielcarek C, Izard D., 1989
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Compatibility of bacterial antagonists of Erwinia amylovora with antibiotics used to control fire blight.
Stockwell VO, Johnson KB, Loper JE., Phytopathology 86(8), 1996
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COLORIMETRIC ESTIMATION OF INDOLEACETIC ACID.
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Bacterial blight and dieback of Eucalyptus species, hybrids and clones in South Africa.
Coutinho TA, Preisig O, Mergaert J, Cnockaert MC, Riedel K-H., 2002
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McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
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Microbial gene identification using interpolated Markov models.
Salzberg SL, Delcher AL, Kasif S, White O., Nucleic Acids Res. 26(2), 1998
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CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
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Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
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GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
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The KEGG databases at GenomeNet.
Kanehisa M, Goto S, Kawashima S, Nakaya A., Nucleic Acids Res. 30(1), 2002
PMID: 11752249
Kanehisa M, Goto S, Kawashima S, Nakaya A., Nucleic Acids Res. 30(1), 2002
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Mauve: multiple alignment of conserved genomic sequence with rearrangements.
Darling AC, Mau B, Blattner FR, Perna NT., Genome Res. 14(7), 2004
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Darling AC, Mau B, Blattner FR, Perna NT., Genome Res. 14(7), 2004
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Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
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EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
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Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
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