Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element

Mann RA, Blom J, Bühlmann A, Plummer KM, Beer SV, Luck JE, Goesmann A, Frey JE, Rodoni BC, Duffy B, Smits THM (2012)
Gene 504(1): 6-12.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Mann, Rachel A; Blom, JochenUniBi; Bühlmann, Andreas; Plummer, Kim M; Beer, Steven V; Luck, Joanne E; Goesmann, AlexanderUniBi ; Frey, Jürg E; Rodoni, Brendan C; Duffy, Brion; Smits, Theo H M
Abstract / Bemerkung
The Hrp pathogenicity island (hrpPAI) of Erwinia amylovora not only encodes a type III secretion system (T3SS) and other genes required for pathogenesis on host plants, but also includes the so-called island transfer (IT) region, a region that originates from an integrative conjugative element (ICE). Comparative genomic analysis of the IT regions of two Spiraeoideae- and three Rubus-infecting strains revealed that the regions in Spiraeoideae-infecting strains were syntenic and highly conserved in length and genetic information, but that the IT regions of the Rubus-infecting strains varied in gene content and length, showing a mosaic structure. None of the ICEs in E. amylovora strains were complete, as conserved ICE genes and the left border were missing, probably due to reductive genome evolution. Comparison of the hrpPAI region of E. amylovora strains to syntenic regions from other Erwinia spp. indicates that the hrpPAI and the IT regions are the result of several insertion and deletion events that have occurred within the ICE. It also suggests that the T3SS was present in a common ancestor of the pathoadapted Erwinia spp. and that insertion and deletion events in the IT region occurred during speciation.
Erscheinungsjahr
2012
Zeitschriftentitel
Gene
Band
504
Ausgabe
1
Seite(n)
6-12
ISSN
0378-1119
Page URI
https://pub.uni-bielefeld.de/record/2500946

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Mann RA, Blom J, Bühlmann A, et al. Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene. 2012;504(1):6-12.
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene, 504(1), 6-12. doi:10.1016/j.gene.2012.05.002
Mann, Rachel A, Blom, Jochen, Bühlmann, Andreas, Plummer, Kim M, Beer, Steven V, Luck, Joanne E, Goesmann, Alexander, et al. 2012. “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”. Gene 504 (1): 6-12.
Mann, R. A., Blom, J., Bühlmann, A., Plummer, K. M., Beer, S. V., Luck, J. E., Goesmann, A., Frey, J. E., Rodoni, B. C., Duffy, B., et al. (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene 504, 6-12.
Mann, R.A., et al., 2012. Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene, 504(1), p 6-12.
R.A. Mann, et al., “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”, Gene, vol. 504, 2012, pp. 6-12.
Mann, R.A., Blom, J., Bühlmann, A., Plummer, K.M., Beer, S.V., Luck, J.E., Goesmann, A., Frey, J.E., Rodoni, B.C., Duffy, B., Smits, T.H.M.: Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene. 504, 6-12 (2012).
Mann, Rachel A, Blom, Jochen, Bühlmann, Andreas, Plummer, Kim M, Beer, Steven V, Luck, Joanne E, Goesmann, Alexander, Frey, Jürg E, Rodoni, Brendan C, Duffy, Brion, and Smits, Theo H M. “Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element”. Gene 504.1 (2012): 6-12.

12 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

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EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J, Kreis J, Spänig S, Juhre T, Bertelli C, Ernst C, Goesmann A., Nucleic Acids Res 44(w1), 2016
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Bühlmann A, Dreo T, Rezzonico F, Pothier JF, Smits TH, Ravnikar M, Frey JE, Duffy B., Environ Microbiol 16(7), 2014
PMID: 24112873
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PMID: 23517317
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.
Bühlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J Microbiol Methods 92(3), 2013
PMID: 23275135
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.
Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., PLoS One 8(2), 2013
PMID: 23409014
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics.
Smits TH, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B., Syst Appl Microbiol 36(7), 2013
PMID: 23726521
Fire blight: applied genomic insights of the pathogen and host.
Malnoy M, Martens S, Norelli JL, Barny MA, Sundin GW, Smits TH, Duffy B., Annu Rev Phytopathol 50(), 2012
PMID: 22702352

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