The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)
Journal of Biotechnology 211: 20-30.
Zeitschriftenaufsatz
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Autor*in
Rupp, OliverUniBi;
Brinkrolf, KarinaUniBi;
Buerth, Christoph;
Kunigo, Maya;
Schneider, JessicaUniBi;
Jaenicke, SebastianUniBi;
Goesmann, AlexanderUniBi 
;
Pühler, AlfredUniBi ;
Jaeger, Karl-Erich;
Ernst, Joachim F.
;
Pühler, AlfredUniBi ;
Jaeger, Karl-Erich;
Ernst, Joachim F.Einrichtung
Abstract / Bemerkung
The yeast Cyberlindnera jadinii is a close relative of Candida utilis that is being used in the food and feed industries. Here, we present the 12.7Mb genome sequence of C. jadinii strain CBS 1600 generated by next generation sequencing. The deduced draft genome sequence consists of seven large scaffolds analogous to the seven largest chromosomes of C. utilis. An automated annotation of the C jadinii genome identified 6147 protein-coding sequences. The level of ploidy for both genomes was analyzed by calling single nucleotide polymorphisms (SNPs) and was verified measuring nuclear DNA contents by florescence activated cell sorting (FACS). Both analyses determined the level of ploidy to diploid for C. jadinii and to triploid for C utilis. However, SNP calling for C. jadinii also identified scaffold regions that seem to be haploid, triploid or tetraploid. (C) 2015 Elsevier B.V. All rights reserved.
Stichworte
nucleotide polymorphism) calling;
Candida utilis;
Cyberlindnera jadinii;
SNP (single;
Genome sequence;
Level of ploidy
Erscheinungsjahr
2015
Zeitschriftentitel
Journal of Biotechnology
Band
211
Seite(n)
20-30
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2782605
Zitieren
Rupp O, Brinkrolf K, Buerth C, et al. The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology. 2015;211:20-30.
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., et al. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, 20-30. doi:10.1016/j.jbiotec.2015.06.423
Rupp, Oliver, Brinkrolf, Karina, Buerth, Christoph, Kunigo, Maya, Schneider, Jessica, Jaenicke, Sebastian, Goesmann, Alexander, Pühler, Alfred, Jaeger, Karl-Erich, and Ernst, Joachim F. 2015. “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”. Journal of Biotechnology 211: 20-30.
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K. - E., and Ernst, J. F. (2015). The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology 211, 20-30.
Rupp, O., et al., 2015. The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology, 211, p 20-30.
O. Rupp, et al., “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”, Journal of Biotechnology, vol. 211, 2015, pp. 20-30.
Rupp, O., Brinkrolf, K., Buerth, C., Kunigo, M., Schneider, J., Jaenicke, S., Goesmann, A., Pühler, A., Jaeger, K.-E., Ernst, J.F.: The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms. Journal of Biotechnology. 211, 20-30 (2015).
Rupp, Oliver, Brinkrolf, Karina, Buerth, Christoph, Kunigo, Maya, Schneider, Jessica, Jaenicke, Sebastian, Goesmann, Alexander, Pühler, Alfred, Jaeger, Karl-Erich, and Ernst, Joachim F. “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”. Journal of Biotechnology 211 (2015): 20-30.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
2 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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Buerth C, Mausberg AK, Heininger MK, Hartung HP, Kieseier BC, Ernst JF., PLoS One 11(5), 2016
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Buerth C, Tielker D, Ernst JF., Appl Microbiol Biotechnol 100(16), 2016
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