High-quality genome sequence of Pichia pastoris CBS7435
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
Journal of Biotechnology 154(4): 312-320.
Zeitschriftenaufsatz
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Autor*in
Küberl, Andreas;
Schneider, JessicaUniBi;
Thallinger, Gerhard G.;
Anderl, Ingund;
Wibberg, DanielUniBi;
Hajek, Tanja;
Jaenicke, SebastianUniBi;
Brinkrolf, KarinaUniBi;
Goesmann, AlexanderUniBi ;
Szczepanowski, RafaelUniBi;
Pühler, AlfredUniBi ;
Schwab, Helmut
Alle
Alle
Einrichtung
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Institut für Bioinformatik
Abstract / Bemerkung
The methylotrophic yeast Pichia pastoris (Komagataella phaffii) CBS7435 is the parental strain of commonly used P. pastoris recombinant protein production hosts making it well suited for improving the understanding of associated genomic features. Here, we present a 9.35Mbp high-quality genome sequence of P. pastoris CBS7435 established by a combination of 454 and Illumina sequencing. An automatic annotation of the genome sequence yielded 5007 protein-coding genes, 124 tRNAs and 29 rRNAs. Moreover, we report the complete DNA sequence of the first mitochondrial genome of a methylotrophic yeast. Fifteen genes encoding proteins, 2 rRNA and 25 tRNA loci were identified on the 35.7kbp circular, mitochondrial DNA. Furthermore, the architecture of the putative alpha mating factor protein of P. pastoris CBS7435 turned out to be more complex than the corresponding protein of Saccharomyces cerevisiae. Copyright 2011 Elsevier B.V. All rights reserved.
Erscheinungsjahr
2011
Zeitschriftentitel
Journal of Biotechnology
Band
154
Ausgabe
4
Seite(n)
312-320
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2317371
Zitieren
Küberl A, Schneider J, Thallinger GG, et al. High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology. 2011;154(4):312-320.
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), 312-320. https://doi.org/10.1016/j.jbiotec.2011.04.014
Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, et al. 2011. “High-quality genome sequence of Pichia pastoris CBS7435”. Journal of Biotechnology 154 (4): 312-320.
Küberl, A., Schneider, J., Thallinger, G. G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology 154, 312-320.
Küberl, A., et al., 2011. High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology, 154(4), p 312-320.
A. Küberl, et al., “High-quality genome sequence of Pichia pastoris CBS7435”, Journal of Biotechnology, vol. 154, 2011, pp. 312-320.
Küberl, A., Schneider, J., Thallinger, G.G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., Pühler, A., Schwab, H., Glieder, A., Pichler, H.: High-quality genome sequence of Pichia pastoris CBS7435. Journal of Biotechnology. 154, 312-320 (2011).
Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, Brinkrolf, Karina, Goesmann, Alexander, Szczepanowski, Rafael, Pühler, Alfred, Schwab, Helmut, Glieder, Anton, and Pichler, Harald. “High-quality genome sequence of Pichia pastoris CBS7435”. Journal of Biotechnology 154.4 (2011): 312-320.
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Complete genome sequence of Peptoniphilus sp. strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation.
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PMID: 25242663
Tomazetto G, Hahnke S, Maus I, Wibberg D, Pühler A, Schlüter A, Klocke M., J Biotechnol 192 Pt A(), 2014
PMID: 25242663
Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system.
Hanson SJ, Byrne KP, Wolfe KH., Proc Natl Acad Sci U S A 111(45), 2014
PMID: 25349420
Hanson SJ, Byrne KP, Wolfe KH., Proc Natl Acad Sci U S A 111(45), 2014
PMID: 25349420
Development of a hexahistidine-3× FLAG-tandem affinity purification method for endogenous protein complexes in Pichia pastoris.
Higo T, Suka N, Ehara H, Wakamori M, Sato S, Maeda H, Sekine S, Umehara T, Yokoyama S., J Struct Funct Genomics 15(4), 2014
PMID: 25398586
Higo T, Suka N, Ehara H, Wakamori M, Sato S, Maeda H, Sekine S, Umehara T, Yokoyama S., J Struct Funct Genomics 15(4), 2014
PMID: 25398586
Lipidome and proteome of lipid droplets from the methylotrophic yeast Pichia pastoris.
Ivashov VA, Grillitsch K, Koefeler H, Leitner E, Baeumlisberger D, Karas M, Daum G., Biochim Biophys Acta 1831(2), 2013
PMID: 23041514
Ivashov VA, Grillitsch K, Koefeler H, Leitner E, Baeumlisberger D, Karas M, Daum G., Biochim Biophys Acta 1831(2), 2013
PMID: 23041514
Regulation of Pichia pastoris promoters and its consequences for protein production.
Vogl T, Glieder A., N Biotechnol 30(4), 2013
PMID: 23165100
Vogl T, Glieder A., N Biotechnol 30(4), 2013
PMID: 23165100
Biotechnology of non-Saccharomyces yeasts--the ascomycetes.
Johnson EA., Appl Microbiol Biotechnol 97(2), 2013
PMID: 23184219
Johnson EA., Appl Microbiol Biotechnol 97(2), 2013
PMID: 23184219
Reconstruction and visualization of carbohydrate, N-glycosylation pathways in Pichia pastoris CBS7435 using computational and system biology approaches.
Srivastava A, Somvanshi P, Mishra BN., Syst Synth Biol 7(1-2), 2013
PMID: 24432138
Srivastava A, Somvanshi P, Mishra BN., Syst Synth Biol 7(1-2), 2013
PMID: 24432138
Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina).
Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, Souciet JL, Boekhout T, Gabaldon T, Wincker P, Dujon B., Genome Biol Evol 5(12), 2013
PMID: 24317973
Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, Souciet JL, Boekhout T, Gabaldon T, Wincker P, Dujon B., Genome Biol Evol 5(12), 2013
PMID: 24317973
Metabolic reconstruction and flux analysis of industrial Pichia yeasts.
Chung BK, Lakshmanan M, Klement M, Ching CB, Lee DY., Appl Microbiol Biotechnol 97(5), 2013
PMID: 23339015
Chung BK, Lakshmanan M, Klement M, Ching CB, Lee DY., Appl Microbiol Biotechnol 97(5), 2013
PMID: 23339015
Pichia pastoris: protein production host and model organism for biomedical research.
Gasser B, Prielhofer R, Marx H, Maurer M, Nocon J, Steiger M, Puxbaum V, Sauer M, Mattanovich D., Future Microbiol 8(2), 2013
PMID: 23374125
Gasser B, Prielhofer R, Marx H, Maurer M, Nocon J, Steiger M, Puxbaum V, Sauer M, Mattanovich D., Future Microbiol 8(2), 2013
PMID: 23374125
New opportunities by synthetic biology for biopharmaceutical production in Pichia pastoris.
Vogl T, Hartner FS, Glieder A., Curr Opin Biotechnol 24(6), 2013
PMID: 23522654
Vogl T, Hartner FS, Glieder A., Curr Opin Biotechnol 24(6), 2013
PMID: 23522654
Identification of triacylglycerol and steryl ester synthases of the methylotrophic yeast Pichia pastoris.
Ivashov VA, Zellnig G, Grillitsch K, Daum G., Biochim Biophys Acta 1831(6), 2013
PMID: 23524242
Ivashov VA, Zellnig G, Grillitsch K, Daum G., Biochim Biophys Acta 1831(6), 2013
PMID: 23524242
The secretory pathway: exploring yeast diversity.
Delic M, Valli M, Graf AB, Pfeffer M, Mattanovich D, Gasser B., FEMS Microbiol Rev 37(6), 2013
PMID: 23480475
Delic M, Valli M, Graf AB, Pfeffer M, Mattanovich D, Gasser B., FEMS Microbiol Rev 37(6), 2013
PMID: 23480475
Journal of Biotechnology opens the new section "Genome Announcement".
Puehler A., J Biotechnol 168(1), 2013
PMID: 23973871
Puehler A., J Biotechnol 168(1), 2013
PMID: 23973871
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant.
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A., J Biotechnol 168(4), 2013
PMID: 24184088
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A., J Biotechnol 168(4), 2013
PMID: 24184088
Knockout of an endogenous mannosyltransferase increases the homogeneity of glycoproteins produced in Pichia pastoris.
Krainer FW, Gmeiner C, Neutsch L, Windwarder M, Pletzenauer R, Herwig C, Altmann F, Glieder A, Spadiut O., Sci Rep 3(), 2013
PMID: 24252857
Krainer FW, Gmeiner C, Neutsch L, Windwarder M, Pletzenauer R, Herwig C, Altmann F, Glieder A, Spadiut O., Sci Rep 3(), 2013
PMID: 24252857
Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1.
Ravin NV, Eldarov MA, Kadnikov VV, Beletsky AV, Schneider J, Mardanova ES, Smekalova EM, Zvereva MI, Dontsova OA, Mardanov AV, Skryabin KG., BMC Genomics 14(), 2013
PMID: 24279325
Ravin NV, Eldarov MA, Kadnikov VV, Beletsky AV, Schneider J, Mardanova ES, Smekalova EM, Zvereva MI, Dontsova OA, Mardanov AV, Skryabin KG., BMC Genomics 14(), 2013
PMID: 24279325
Protein secretion in Pichia pastoris and advances in protein production.
Damasceno LM, Huang CJ, Batt CA., Appl Microbiol Biotechnol 93(1), 2012
PMID: 22057543
Damasceno LM, Huang CJ, Batt CA., Appl Microbiol Biotechnol 93(1), 2012
PMID: 22057543
Mitochondrial genomes of yeasts of the Yarrowia clade.
Gaillardin C, Neuvéglise C, Kerscher S, Nicaud JM., FEMS Yeast Res 12(3), 2012
PMID: 22188421
Gaillardin C, Neuvéglise C, Kerscher S, Nicaud JM., FEMS Yeast Res 12(3), 2012
PMID: 22188421
Recombinant protein expression in Pichia pastoris strains with an engineered methanol utilization pathway.
Krainer FW, Dietzsch C, Hajek T, Herwig C, Spadiut O, Glieder A., Microb Cell Fact 11(), 2012
PMID: 22330134
Krainer FW, Dietzsch C, Hajek T, Herwig C, Spadiut O, Glieder A., Microb Cell Fact 11(), 2012
PMID: 22330134
Deletion of the Pichia pastoris KU70 homologue facilitates platform strain generation for gene expression and synthetic biology.
Näätsaari L, Mistlberger B, Ruth C, Hajek T, Hartner FS, Glieder A., PLoS One 7(6), 2012
PMID: 22768112
Näätsaari L, Mistlberger B, Ruth C, Hajek T, Hartner FS, Glieder A., PLoS One 7(6), 2012
PMID: 22768112
RETRACTED ARTICLE: Simultaneous expression of antibody light and heavy chains in Pichia pastoris: improving retransformation outcome by linearizing vector at a different site.
, Appl Microbiol Biotechnol 96(5), 2012
PMID: 22911094
, Appl Microbiol Biotechnol 96(5), 2012
PMID: 22911094
Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing.
Liang S, Wang B, Pan L, Ye Y, He M, Han S, Zheng S, Wang X, Lin Y., BMC Genomics 13(), 2012
PMID: 23276294
Liang S, Wang B, Pan L, Ye Y, He M, Han S, Zheng S, Wang X, Lin Y., BMC Genomics 13(), 2012
PMID: 23276294
References
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