Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342
De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, Coutinho TA (2012)
Journal of Bacteriology 194(6): 1615-1616.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
De Maayer, Pieter;
Chan, Wai Yin;
Rezzonico, Fabio;
Bühlmann, Andreas;
Venter, Stephanus N;
Blom, JochenUniBi;
Goesmann, AlexanderUniBi ;
Frey, Jürg E;
Smits, Theo H M;
Duffy, Brion;
Coutinho, Teresa A
Einrichtung
Abstract / Bemerkung
The enterobacterium Pantoea ananatis is an ecologically versatile species. It has been found in the environment, as plant epiphyte and endophyte, as an emerging phytopathogen, and as a presumptive, opportunistic human pathogen. Here, we report the complete genome sequence of P. ananatis LMG 5342, isolated from a human wound.
Stichworte
DNA;
Enterobacteriaceae Infections/microbiology;
Bacterial/chemistry;
DNA;
Bacterial/genetics;
Molecular Sequence Data;
DNA;
Pantoea/isolation & purification;
Sequence Analysis;
Pantoea/genetics;
Wound Infection/microbiology;
Bacterial;
Humans;
Genome
Erscheinungsjahr
2012
Zeitschriftentitel
Journal of Bacteriology
Band
194
Ausgabe
6
Seite(n)
1615-1616
ISSN
0021-9193
Page URI
https://pub.uni-bielefeld.de/record/2501081
Zitieren
De Maayer P, Chan WY, Rezzonico F, et al. Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology. 2012;194(6):1615-1616.
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), 1615-1616. doi:10.1128/JB.06715-11
De Maayer, Pieter, Chan, Wai Yin, Rezzonico, Fabio, Bühlmann, Andreas, Venter, Stephanus N, Blom, Jochen, Goesmann, Alexander, et al. 2012. “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”. Journal of Bacteriology 194 (6): 1615-1616.
De Maayer, P., Chan, W. Y., Rezzonico, F., Bühlmann, A., Venter, S. N., Blom, J., Goesmann, A., Frey, J. E., Smits, T. H. M., Duffy, B., et al. (2012). Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology 194, 1615-1616.
De Maayer, P., et al., 2012. Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology, 194(6), p 1615-1616.
P. De Maayer, et al., “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”, Journal of Bacteriology, vol. 194, 2012, pp. 1615-1616.
De Maayer, P., Chan, W.Y., Rezzonico, F., Bühlmann, A., Venter, S.N., Blom, J., Goesmann, A., Frey, J.E., Smits, T.H.M., Duffy, B., Coutinho, T.A.: Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology. 194, 1615-1616 (2012).
De Maayer, Pieter, Chan, Wai Yin, Rezzonico, Fabio, Bühlmann, Andreas, Venter, Stephanus N, Blom, Jochen, Goesmann, Alexander, Frey, Jürg E, Smits, Theo H M, Duffy, Brion, and Coutinho, Teresa A. “Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342”. Journal of Bacteriology 194.6 (2012): 1615-1616.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
EMBL
2 Einträge gefunden, die diesen Artikel zitieren
Pantoea ananatis LMG 5342 plasmid pPANA10 complete sequence (EMBL: HE617161)
Sequence length: 302599
Download in FASTA format
Sequence length: 302599
Download in FASTA format
Pantoea ananatis LMG 5342 main chromosome complete genome (EMBL: HE617160)
Sequence length: 4605545
Download in FASTA format
Sequence length: 4605545
Download in FASTA format
24 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Genome-Based Characterization of Biological Processes That Differentiate Closely Related Bacteria.
Palmer M, Steenkamp ET, Coetzee MPA, Blom J, Venter SN., Front Microbiol 9(), 2018
PMID: 29467735
Palmer M, Steenkamp ET, Coetzee MPA, Blom J, Venter SN., Front Microbiol 9(), 2018
PMID: 29467735
Comparative Genomics Analysis of Plasmid pPV989-94 from a Clinical Isolate of Pantoea vagans PV989.
Xu L, Yin M, Zhu T, Liu Y, Ying Y, Lu J, Lin C, Ying J, Xu T, Ni L, Bao Q, Lu S., Int J Genomics 2018(), 2018
PMID: 29862249
Xu L, Yin M, Zhu T, Liu Y, Ying Y, Lu J, Lin C, Ying J, Xu T, Ni L, Bao Q, Lu S., Int J Genomics 2018(), 2018
PMID: 29862249
Genome Sequence of Pantoea ananatis SGAir0210, Isolated from Outdoor Air in Singapore.
Luhung I, Junqueira ACM, Uchida A, Purbojati RW, Houghton JNI, Chénard C, Wong A, Clare ME, Kushwaha KK, Panicker D, Putra A, Gaultier NE, Premkrishnan BNV, Heinle CE, Vettath VK, Drautz-Moses DI, Schuster SC., Genome Announc 6(27), 2018
PMID: 29976614
Luhung I, Junqueira ACM, Uchida A, Purbojati RW, Houghton JNI, Chénard C, Wong A, Clare ME, Kushwaha KK, Panicker D, Putra A, Gaultier NE, Premkrishnan BNV, Heinle CE, Vettath VK, Drautz-Moses DI, Schuster SC., Genome Announc 6(27), 2018
PMID: 29976614
The evolution of three siderophore biosynthetic clusters in environmental and host-associating strains of Pantoea.
Soutar CD, Stavrinides J., Mol Genet Genomics 293(6), 2018
PMID: 30027301
Soutar CD, Stavrinides J., Mol Genet Genomics 293(6), 2018
PMID: 30027301
Pantoea ananatis: genomic insights into a versatile pathogen.
Weller-Stuart T, De Maayer P, Coutinho T., Mol Plant Pathol 18(9), 2017
PMID: 27880983
Weller-Stuart T, De Maayer P, Coutinho T., Mol Plant Pathol 18(9), 2017
PMID: 27880983
Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii.
De Maayer P, Aliyu H, Vikram S, Blom J, Duffy B, Cowan DA, Smits THM, Venter SN, Coutinho TA., Front Microbiol 8(), 2017
PMID: 28959245
De Maayer P, Aliyu H, Vikram S, Blom J, Duffy B, Cowan DA, Smits THM, Venter SN, Coutinho TA., Front Microbiol 8(), 2017
PMID: 28959245
Infections Caused by Antimicrobial Drug-Resistant Saprophytic Gram-Negative Bacteria in the Environment.
Raphael E, Riley LW., Front Med (Lausanne) 4(), 2017
PMID: 29164118
Raphael E, Riley LW., Front Med (Lausanne) 4(), 2017
PMID: 29164118
A Novel Glycolipid Biosurfactant Confers Grazing Resistance upon Pantoea ananatis BRT175 against the Social Amoeba Dictyostelium discoideum.
Smith DD, Nickzad A, Déziel E, Stavrinides J., mSphere 1(1), 2016
PMID: 27303689
Smith DD, Nickzad A, Déziel E, Stavrinides J., mSphere 1(1), 2016
PMID: 27303689
Prevalence and characterization of ESBL- and AmpC-producing Enterobacteriaceae on retail vegetables.
van Hoek AH, Veenman C, van Overbeek WM, Lynch G, de Roda Husman AM, Blaak H., Int J Food Microbiol 204(), 2015
PMID: 25828704
van Hoek AH, Veenman C, van Overbeek WM, Lynch G, de Roda Husman AM, Blaak H., Int J Food Microbiol 204(), 2015
PMID: 25828704
The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements.
Sheibani-Tezerji R, Naveed M, Jehl MA, Sessitsch A, Rattei T, Mitter B., Front Microbiol 6(), 2015
PMID: 26029184
Sheibani-Tezerji R, Naveed M, Jehl MA, Sessitsch A, Rattei T, Mitter B., Front Microbiol 6(), 2015
PMID: 26029184
Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.
De Maayer P, Chan WY, Martin DA, Blom J, Venter SN, Duffy B, Cowan DA, Smits TH, Coutinho TA., Front Microbiol 6(), 2015
PMID: 26106378
De Maayer P, Chan WY, Martin DA, Blom J, Venter SN, Duffy B, Cowan DA, Smits TH, Coutinho TA., Front Microbiol 6(), 2015
PMID: 26106378
Pantoea: insights into a highly versatile and diverse genus within the Enterobacteriaceae.
Walterson AM, Stavrinides J., FEMS Microbiol Rev 39(6), 2015
PMID: 26109597
Walterson AM, Stavrinides J., FEMS Microbiol Rev 39(6), 2015
PMID: 26109597
Pantoea intestinalis sp. nov., isolated from the human gut.
Prakash O, Nimonkar Y, Vaishampayan A, Mishra M, Kumbhare S, Josef N, Shouche YS., Int J Syst Evol Microbiol 65(10), 2015
PMID: 26297006
Prakash O, Nimonkar Y, Vaishampayan A, Mishra M, Kumbhare S, Josef N, Shouche YS., Int J Syst Evol Microbiol 65(10), 2015
PMID: 26297006
Genome Sequence of Pantoea ananatis Strain CFH 7-1, Which Is Associated with a Vector-Borne Cotton Fruit Disease.
Medrano EG, Bell AA., Genome Announc 3(5), 2015
PMID: 26358602
Medrano EG, Bell AA., Genome Announc 3(5), 2015
PMID: 26358602
Quantitative evaluation of the host-colonizing capabilities of the enteric bacterium Pantoea using plant and insect hosts.
Nadarasah G, Stavrinides J., Microbiology 160(pt 3), 2014
PMID: 24430494
Nadarasah G, Stavrinides J., Microbiology 160(pt 3), 2014
PMID: 24430494
Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts.
De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PR, Coutinho TA., BMC Genomics 15(), 2014
PMID: 24884520
De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PR, Coutinho TA., BMC Genomics 15(), 2014
PMID: 24884520
Ribosomally encoded antibacterial proteins and peptides from Pseudomonas.
Ghequire MG, De Mot R., FEMS Microbiol Rev 38(4), 2014
PMID: 24923764
Ghequire MG, De Mot R., FEMS Microbiol Rev 38(4), 2014
PMID: 24923764
Draft Genome Sequences of the Onion Center Rot Pathogen Pantoea ananatis PA4 and Maize Brown Stalk Rot Pathogen P. ananatis BD442.
Weller-Stuart T, Chan WY, Coutinho TA, Venter SN, Smits TH, Duffy B, Goszczynska T, Cowan DA, de Maayer P., Genome Announc 2(4), 2014
PMID: 25103759
Weller-Stuart T, Chan WY, Coutinho TA, Venter SN, Smits TH, Duffy B, Goszczynska T, Cowan DA, de Maayer P., Genome Announc 2(4), 2014
PMID: 25103759
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.
Bühlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J Microbiol Methods 92(3), 2013
PMID: 23275135
Bühlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J Microbiol Methods 92(3), 2013
PMID: 23275135
A novel l-isoleucine-4'-dioxygenase and l-isoleucine dihydroxylation cascade in Pantoea ananatis.
Smirnov SV, Sokolov PM, Kotlyarova VA, Samsonova NN, Kodera T, Sugiyama M, Torii T, Hibi M, Shimizu S, Yokozeki K, Ogawa J., Microbiologyopen 2(3), 2013
PMID: 23554367
Smirnov SV, Sokolov PM, Kotlyarova VA, Samsonova NN, Kodera T, Sugiyama M, Torii T, Hibi M, Shimizu S, Yokozeki K, Ogawa J., Microbiologyopen 2(3), 2013
PMID: 23554367
Draft Genome Sequence of the Antibiotic-Producing Epiphytic Isolate Pantoea ananatis BRT175.
Smith DD, Kirzinger MW, Stavrinides J., Genome Announc 1(6), 2013
PMID: 24201193
Smith DD, Kirzinger MW, Stavrinides J., Genome Announc 1(6), 2013
PMID: 24201193
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits TH., Mol Plant Pathol 13(8), 2012
PMID: 22583486
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits TH., Mol Plant Pathol 13(8), 2012
PMID: 22583486
Detection of AI-2 receptors in genomes of Enterobacteriaceae suggests a role of type-2 quorum sensing in closed ecosystems.
Rezzonico F, Smits TH, Duffy B., Sensors (Basel) 12(5), 2012
PMID: 22778662
Rezzonico F, Smits TH, Duffy B., Sensors (Basel) 12(5), 2012
PMID: 22778662
The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification.
De Maayer P, Chan WY, Blom J, Venter SN, Duffy B, Smits TH, Coutinho TA., BMC Genomics 13(), 2012
PMID: 23151240
De Maayer P, Chan WY, Blom J, Venter SN, Duffy B, Smits TH, Coutinho TA., BMC Genomics 13(), 2012
PMID: 23151240
14 References
Daten bereitgestellt von Europe PubMed Central.
CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
PMID: 10331277
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
PMID: 10331277
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom J., 2009
Blom J., 2009
Attempts to classify herbicola group-Enterobacter agglomerans strains by deoxyribonucleic acid hybridization and phenotypic tests
Brenner DJ, Fanning GR, Leete JK, Steigerwalt AG, Krichevsky MI., 1984
Brenner DJ, Fanning GR, Leete JK, Steigerwalt AG, Krichevsky MI., 1984
Pantoea ananatis: an unconventional plant pathogen.
Coutinho TA, Venter SN., Mol. Plant Pathol. 10(3), 2009
PMID: 19400836
Coutinho TA, Venter SN., Mol. Plant Pathol. 10(3), 2009
PMID: 19400836
Bacteremic infection with Pantoea ananatis.
De Baere T, Verhelst R, Labit C, Verschraegen G, Wauters G, Claeys G, Vaneechoutte M., J. Clin. Microbiol. 42(9), 2004
PMID: 15365053
De Baere T, Verhelst R, Labit C, Verschraegen G, Wauters G, Claeys G, Vaneechoutte M., J. Clin. Microbiol. 42(9), 2004
PMID: 15365053
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback.
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PR, Joubert F, Coutinho TA., J. Bacteriol. 192(11), 2010
PMID: 20348253
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PR, Joubert F, Coutinho TA., J. Bacteriol. 192(11), 2010
PMID: 20348253
Clinical strains of Enterobacter agglomerans (synonyms: Erwinia herbicola, Erwinia milletiae) identified by DNA-DNA-hybridization.
Lind E, Ursing J., Acta Pathol Microbiol Immunol Scand B 94(4), 1986
PMID: 3751575
Lind E, Ursing J., Acta Pathol Microbiol Immunol Scand B 94(4), 1986
PMID: 3751575
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as (Serrano 1928) comb. nov. and (Smith 1898) comb. nov., respectively, and description of subsp. indologenes subsp. nov. Int.
Mergaert J, Verdonck L, Kersters K., 1993
Mergaert J, Verdonck L, Kersters K., 1993
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Genotypic comparison of Pantoea agglomerans plant and clinical strains.
Rezzonico F, Smits TH, Montesinos E, Frey JE, Duffy B., BMC Microbiol. 9(), 2009
PMID: 19772624
Rezzonico F, Smits TH, Montesinos E, Frey JE, Duffy B., BMC Microbiol. 9(), 2009
PMID: 19772624
clinical isolates cannot be accurately assigned to species based on metabolic profiling
Rezzonico F, Stockwell VO, Tonolla M, Duffy B, Smits THM., 2011
Rezzonico F, Stockwell VO, Tonolla M, Duffy B, Smits THM., 2011
Microbial gene identification using interpolated Markov models.
Salzberg SL, Delcher AL, Kasif S, White O., Nucleic Acids Res. 26(2), 1998
PMID: 9421513
Salzberg SL, Delcher AL, Kasif S, White O., Nucleic Acids Res. 26(2), 1998
PMID: 9421513
Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1.
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS ONE 6(7), 2011
PMID: 21789243
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS ONE 6(7), 2011
PMID: 21789243
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 22374951
PubMed | Europe PMC
Suchen in