Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Schneiker-Bekel S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, et al. (2006)
Nature Biotechnology 24(8): 997-1004.

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Autor*in
Schneiker-Bekel, SusanneUniBi; dos Santos, Vitor A. P. Martins; Bartels, Daniela; Bekel, ThomasUniBi; Brecht, Martina; Buhrmester, Jens; Chernikova, Tatyana N.; Denaro, Renata; Ferrer, Manuel; Gertler, Christoph; Goesmann, AlexanderUniBi ; Golyshina, Olga V.
Alle
Einrichtung
Fakultät für Biologie
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Erscheinungsjahr
2006
Zeitschriftentitel
Nature Biotechnology
Band
24
Ausgabe
8
Seite(n)
997-1004
ISSN
1087-0156
Page URI
https://pub.uni-bielefeld.de/record/1598182

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Schneiker-Bekel S, dos Santos VAPM, Bartels D, et al. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology. 2006;24(8):997-1004.
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology, 24(8), 997-1004. https://doi.org/10.1038/nbt1232
Schneiker-Bekel, Susanne, dos Santos, Vitor A. P. Martins, Bartels, Daniela, Bekel, Thomas, Brecht, Martina, Buhrmester, Jens, Chernikova, Tatyana N., et al. 2006. “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”. Nature Biotechnology 24 (8): 997-1004.
Schneiker-Bekel, S., dos Santos, V. A. P. M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., et al. (2006). Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 24, 997-1004.
Schneiker-Bekel, S., et al., 2006. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology, 24(8), p 997-1004.
S. Schneiker-Bekel, et al., “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”, Nature Biotechnology, vol. 24, 2006, pp. 997-1004.
Schneiker-Bekel, S., dos Santos, V.A.P.M., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T.N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O.V., Kaminski, F., Khachane, A.N., Lang, S., Linke, B., McHardy, A.C., Meyer, F., Nechitaylo, T., Pühler, A., Regenhardt, D., Rupp, O., Sabirova, J.S., Selbitschka, W., Yakimov, M.M., Timmis, K.N., Vorhölter, F.-J., Weidner, S., Kaiser, O., Golyshin, P.N.: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology. 24, 997-1004 (2006).
Schneiker-Bekel, Susanne, dos Santos, Vitor A. P. Martins, Bartels, Daniela, Bekel, Thomas, Brecht, Martina, Buhrmester, Jens, Chernikova, Tatyana N., Denaro, Renata, Ferrer, Manuel, Gertler, Christoph, Goesmann, Alexander, Golyshina, Olga V., Kaminski, Filip, Khachane, Amit N., Lang, Siegmund, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Nechitaylo, Taras, Pühler, Alfred, Regenhardt, Daniela, Rupp, Oliver, Sabirova, Julia S., Selbitschka, Werner, Yakimov, Michail M., Timmis, Kenneth N., Vorhölter, Frank-Jörg, Weidner, Stefan, Kaiser, Olaf, and Golyshin, Peter N. “Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis”. Nature Biotechnology 24.8 (2006): 997-1004.

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Pannekens M, Kroll L, Müller H, Mbow FT, Meckenstock RU., N Biotechnol 49(), 2019
PMID: 30502541
Periodic and Spatial Spreading of Alkanes and Alcanivorax Bacteria in Deep Waters of the Mariana Trench.
Li WL, Huang JM, Zhang PW, Cui GJ, Wei ZF, Wu YZ, Gao ZM, Han Z, Wang Y., Appl Environ Microbiol 85(3), 2019
PMID: 30446553
Point Mutations Lead to Increased Levels of c-di-GMP and Phenotypic Changes to the Colony Biofilm Morphology in Alcanivorax borkumensis SK2.
Prasad M, Obana N, Sakai K, Nagakubo T, Miyazaki S, Toyofuku M, Fattaccioli J, Nomura N, Utada AS., Microbes Environ 34(1), 2019
PMID: 30773505
Marine Biosurfactants: Biosynthesis, Structural Diversity and Biotechnological Applications.
Kubicki S, Bollinger A, Katzke N, Jaeger KE, Loeschcke A, Thies S., Mar Drugs 17(7), 2019
PMID: 31323998
Microbial Degradation of Phenanthrene in Pristine and Contaminated Sandy Soils.
Schwarz A, Adetutu EM, Juhasz AL, Aburto-Medina A, Ball AS, Shahsavari E., Microb Ecol 75(4), 2018
PMID: 29080101
Biodegradation of n-alkanes on oil-seawater interfaces at different temperatures and microbial communities associated with the degradation.
Lofthus S, Netzer R, Lewin AS, Heggeset TMB, Haugen T, Brakstad OG., Biodegradation 29(2), 2018
PMID: 29397457
Genome Sequence of a Marine Alkane Degrader, Alcanivorax sp. Strain 97CO-6.
Yin X, Luan X, Xu A, Li Q, Cui Z, Valentine DL., Genome Announc 6(8), 2018
PMID: 29472338
Unique genetic cassettes in a Thermoanaerobacterium contribute to simultaneous conversion of cellulose and monosugars into butanol.
Li T, Zhang C, Yang KL, He J., Sci Adv 4(3), 2018
PMID: 29740597
Alcanivorax mobilis sp. nov., a new hydrocarbon-degrading bacterium isolated from deep-sea sediment.
Yang S, Li M, Lai Q, Li G, Shao Z., Int J Syst Evol Microbiol 68(5), 2018
PMID: 29620491
Membrane Fatty Acid Composition and Cell Surface Hydrophobicity of Marine Hydrocarbonoclastic Alcanivorax borkumensis SK2 Grown on Diesel, Biodiesel and Rapeseed Oil as Carbon Sources.
Konieczna M, Olzog M, Naether DJ, Chrzanowski Ł, Heipieper HJ., Molecules 23(6), 2018
PMID: 29899233
The biotechnological potential of marine bacteria in the novel lineage of Pseudomonas pertucinogena.
Bollinger A, Thies S, Katzke N, Jaeger KE., Microb Biotechnol (), 2018
PMID: 29943398
Marine derived biosurfactants: a vast potential future resource.
Tripathi L, Irorere VU, Marchant R, Banat IM., Biotechnol Lett 40(11-12), 2018
PMID: 30145666
An assessment of the microbial community in an urban fringing tidal marsh with an emphasis on petroleum hydrocarbon degradative genes.
Ní Chadhain SM, Miller JL, Dustin JP, Trethewey JP, Jones SH, Launen LA., Mar Pollut Bull 136(), 2018
PMID: 30509817
Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1.
Gregson BH, Metodieva G, Metodiev MV, Golyshin PN, McKew BA., Front Microbiol 9(), 2018
PMID: 30619200
Characterisation of Arctic Bacterial Communities in the Air above Svalbard.
Cuthbertson L, Amores-Arrocha H, Malard LA, Els N, Sattler B, Pearce DA., Biology (Basel) 6(2), 2017
PMID: 28481257
Inhibitory Effect of Taurine on Biofilm Formation During Alkane Degradation in Acinetobacter oleivorans DR1.
Eom HJ, Park W., Microb Ecol 74(4), 2017
PMID: 28620784
Constraint-based metabolic modelling of marine microbes and communities.
Fondi M, Fani R., Mar Genomics 34(), 2017
PMID: 28648476
Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with potential for bioremediation.
Oliveira JS, Araújo WJ, Figueiredo RM, Silva-Portela RCB, de Brito Guerra A, da Silva Araújo SC, Minnicelli C, Carlos AC, de Vasconcelos ATR, Freitas AT, Agnez-Lima LF., BMC Microbiol 17(1), 2017
PMID: 28750626
Genome Sequencing Reveals the Potential of Achromobacter sp. HZ01 for Bioremediation.
Hong YH, Ye CC, Zhou QZ, Wu XY, Yuan JP, Peng J, Deng H, Wang JH., Front Microbiol 8(), 2017
PMID: 28848520
The genome analysis of Oleiphilus messinensis ME102 (DSM 13489T) reveals backgrounds of its obligate alkane-devouring marine lifestyle.
Toshchakov SV, Korzhenkov AA, Chernikova TN, Ferrer M, Golyshina OV, Yakimov MM, Golyshin PN., Mar Genomics 36(), 2017
PMID: 28802691
Differential expression of the three Alcanivorax borkumensis SK2 genes coding for the P450 cytochromes involved in the assimilation of hydrocarbons.
Sevilla E, Yuste L, Moreno R, Rojo F., Environ Microbiol Rep 9(6), 2017
PMID: 29052944
Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing.
Zhou J, Bai X, Zhao R., Sci Rep 7(1), 2017
PMID: 29146962
Developmental and gut-related changes to microbiomes of the cultured juvenile spiny lobster Panulirus ornatus.
Ooi MC, Goulden EF, Smith GG, Nowak BF, Bridle AR., FEMS Microbiol Ecol 93(12), 2017
PMID: 29145612
Regulation of alkane degradation pathway by a TetR family repressor via an autoregulation positive feedback mechanism in a Gram-positive Dietzia bacterium.
Liang JL, Nie Y, Wang M, Xiong G, Wang YP, Maser E, Wu XL., Mol Microbiol 99(2), 2016
PMID: 26418273
Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments.
Guibert LM, Loviso CL, Borglin S, Jansson JK, Dionisi HM, Lozada M., Microb Ecol 71(1), 2016
PMID: 26547568
Regulation of the Alkane Hydroxylase CYP153 Gene in a Gram-Positive Alkane-Degrading Bacterium, Dietzia sp. Strain DQ12-45-1b.
Liang JL, JiangYang JH, Nie Y, Wu XL., Appl Environ Microbiol 82(2), 2016
PMID: 26567302
From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation.
Fuentes S, Barra B, Caporaso JG, Seeger M., Appl Environ Microbiol 82(3), 2016
PMID: 26590285
A Review on the Genetics of Aliphatic and Aromatic Hydrocarbon Degradation.
Abbasian F, Lockington R, Megharaj M, Naidu R., Appl Biochem Biotechnol 178(2), 2016
PMID: 26481232
EDTA addition enhances bacterial respiration activities and hydrocarbon degradation in bioaugmented and non-bioaugmented oil-contaminated desert soils.
Al Kharusi S, Abed RM, Dobretsov S., Chemosphere 147(), 2016
PMID: 26766366
Effect of Biostimulation Using Sewage Sludge, Soybean Meal, and Wheat Straw on Oil Degradation and Bacterial Community Composition in a Contaminated Desert Soil.
Al-Kindi S, Abed RM., Front Microbiol 7(), 2016
PMID: 26973618
Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host.
Ding JY, Shiu JH, Chen WM, Chiang YR, Tang SL., Front Microbiol 7(), 2016
PMID: 27014194
Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill.
Dombrowski N, Donaho JA, Gutierrez T, Seitz KW, Teske AP, Baker BJ., Nat Microbiol 1(7), 2016
PMID: 27572965
Valorization of lubricant-based wastewater for bacterial neutral lipids production: Growth-linked biosynthesis.
Da Silva PDMP, Lima F, Alves MM, Bijmans MFM, Pereira MA., Water Res 101(), 2016
PMID: 27244293
Rapid detection of microbial cell abundance in aquatic systems.
Rocha AM, Yuan Q, Close DM, O'Dell KB, Fortney JL, Wu J, Hazen TC., Biosens Bioelectron 85(), 2016
PMID: 27315516
In situ detection of alkB2 gene involved in Alcanivorax borkumensis SK2(T) hydrocarbon biodegradation.
Matturro B, Frascadore E, Cappello S, Genovese M, Rossetti S., Mar Pollut Bull 110(1), 2016
PMID: 27315756
Alcanivorax nanhaiticus sp. nov., isolated from deep sea sediment.
Lai Q, Zhou Z, Li G, Li G, Shao Z., Int J Syst Evol Microbiol 66(9), 2016
PMID: 27307296
Separating and characterizing functional alkane degraders from crude-oil-contaminated sites via magnetic nanoparticle-mediated isolation.
Wang X, Zhao X, Li H, Jia J, Liu Y, Ejenavi O, Ding A, Sun Y, Zhang D., Res Microbiol 167(9-10), 2016
PMID: 27475037
Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris.
Oberbeckmann S, Osborn AM, Duhaime MB., PLoS One 11(8), 2016
PMID: 27487037
An impaired metabolic response to hydrostatic pressure explains Alcanivorax borkumensis recorded distribution in the deep marine water column.
Scoma A, Barbato M, Borin S, Daffonchio D, Boon N., Sci Rep 6(), 2016
PMID: 27515484
Draft Genome Sequence of Alcanivorax sp. Strain KX64203 Isolated from Deep-Sea Sediments of Iheya North, Okinawa Trough.
Zhang H, Liu R, Wang M, Wang H, Gao Q, Hou Z, Gao D, Wang L., Genome Announc 4(4), 2016
PMID: 27563046
The Interaction between Plants and Bacteria in the Remediation of Petroleum Hydrocarbons: An Environmental Perspective.
Gkorezis P, Daghio M, Franzetti A, Van Hamme JD, Sillen W, Vangronsveld J., Front Microbiol 7(), 2016
PMID: 27917161
Hydrocarbonoclastic Alcanivorax Isolates Exhibit Different Physiological and Expression Responses to n-dodecane.
Barbato M, Scoma A, Mapelli F, De Smet R, Banat IM, Daffonchio D, Boon N, Borin S., Front Microbiol 7(), 2016
PMID: 28066376
The environment shapes microbial enzymes: five cold-active and salt-resistant carboxylesterases from marine metagenomes.
Tchigvintsev A, Tran H, Popovic A, Kovacic F, Brown G, Flick R, Hajighasemi M, Egorova O, Somody JC, Tchigvintsev D, Khusnutdinova A, Chernikova TN, Golyshina OV, Yakimov MM, Savchenko A, Golyshin PN, Jaeger KE, Yakunin AF., Appl Microbiol Biotechnol 99(5), 2015
PMID: 25194841
Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.
Chronopoulou PM, Sanni GO, Silas-Olu DI, van der Meer JR, Timmis KN, Brussaard CP, McGenity TJ., Microb Biotechnol 8(3), 2015
PMID: 25251384
CYP116B5: a new class VII catalytically self-sufficient cytochrome P450 from Acinetobacter radioresistens that enables growth on alkanes.
Minerdi D, Sadeghi SJ, Di Nardo G, Rua F, Castrignanò S, Allegra P, Gilardi G., Mol Microbiol 95(3), 2015
PMID: 25425282
Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill.
Rodriguez-R LM, Overholt WA, Hagan C, Huettel M, Kostka JE, Konstantinidis KT., ISME J 9(9), 2015
PMID: 25689026
Acinetobacter species as model microorganisms in environmental microbiology: current state and perspectives.
Jung J, Park W., Appl Microbiol Biotechnol 99(6), 2015
PMID: 25693672
Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source.
Antoniou E, Fodelianakis S, Korkakaki E, Kalogerakis N., Front Microbiol 6(), 2015
PMID: 25904907
Unraveling the interactive effects of climate change and oil contamination on laboratory‐simulated estuarine benthic communities
Coelho FJRC, Cleary DFR, Rocha RJM, Calado R, Castanheira JM, Rocha SM, Silva AMS, Simões MMQ, Oliveira V, Lillebø AI, Almeida A, Cunha Â, Lopes I, Ribeiro R, Moreira‐Santos M, Marques CR, Costa R, Pereira R, Gomes NCM., Global change biology. 21(5), 2015
PMID: IND601358654
Tolerance engineering in bacteria for the production of advanced biofuels and chemicals.
Mukhopadhyay A., Trends Microbiol 23(8), 2015
PMID: 26024777
Biodegradation of crude oil by individual bacterial strains and a mixed bacterial consortium.
Santisi S, Cappello S, Catalfamo M, Mancini G, Hassanshahian M, Genovese L, Giuliano L, Yakimov MM., Braz J Microbiol 46(2), 2015
PMID: 26273252
A multiple endpoint analysis of the effects of chronic exposure to sediment contaminated with Deepwater Horizon oil on juvenile Southern flounder and their associated microbiomes.
Brown-Peterson NJ, Krasnec M, Takeshita R, Ryan CN, Griffitt KJ, Lay C, Mayer GD, Bayha KM, Hawkins WE, Lipton I, Morris J, Griffitt RJ., Aquat Toxicol 165(), 2015
PMID: 26092636
Input of organic matter enhances degradation of weathered diesel fuel in sub-tropical sediments.
Horel A, Mortazavi B, Sobecky PA., Sci Total Environ 533(), 2015
PMID: 26151652
Bacterial Diversity and Bioremediation Potential of the Highly Contaminated Marine Sediments at El-Max District (Egypt, Mediterranean Sea).
Amer RA, Mapelli F, El Gendi HM, Barbato M, Goda DA, Corsini A, Cavalca L, Fusi M, Borin S, Daffonchio D, Abdel-Fattah YR., Biomed Res Int 2015(), 2015
PMID: 26273661
Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils.
Tsuboi S, Yamamura S, Nakajima-Kambe T, Iwasaki K., Springerplus 4(), 2015
PMID: 26405645
Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle.
Lea-Smith DJ, Biller SJ, Davey MP, Cotton CA, Perez Sepulveda BM, Turchyn AV, Scanlan DJ, Smith AG, Chisholm SW, Howe CJ., Proc Natl Acad Sci U S A 112(44), 2015
PMID: 26438854
Engineering improved bio-jet fuel tolerance in Escherichia coli using a transgenic library from the hydrocarbon-degrader Marinobacter aquaeolei.
Tomko TA, Dunlop MJ., Biotechnol Biofuels 8(), 2015
PMID: 26448785
Characterization of a CYP153 alkane hydroxylase gene in a Gram-positive Dietzia sp. DQ12-45-1b and its "team role" with alkW1 in alkane degradation.
Nie Y, Liang JL, Fang H, Tang YQ, Wu XL., Appl Microbiol Biotechnol 98(1), 2014
PMID: 23504079
Novel characteristics of succinate coenzyme A (Succinate-CoA) ligases: conversion of malate to malyl-CoA and CoA-thioester formation of succinate analogues in vitro.
Nolte JC, Schürmann M, Schepers CL, Vogel E, Wübbeler JH, Steinbüchel A., Appl Environ Microbiol 80(1), 2014
PMID: 24141127
Conversion of post consumer polyethylene to the biodegradable polymer polyhydroxyalkanoate.
Guzik MW, Kenny ST, Duane GF, Casey E, Woods T, Babu RP, Nikodinovic-Runic J, Murray M, O'Connor KE., Appl Microbiol Biotechnol 98(9), 2014
PMID: 24413975
Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example.
Röling WF, van Bodegom PM., Front Microbiol 5(), 2014
PMID: 24723922
Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications.
Fuentes S, Méndez V, Aguila P, Seeger M., Appl Microbiol Biotechnol 98(11), 2014
PMID: 24691868
Kinetic parameters for nutrient enhanced crude oil biodegradation in intertidal marine sediments.
Singh AK, Sherry A, Gray ND, Jones DM, Bowler BF, Head IM., Front Microbiol 5(), 2014
PMID: 24782848
Integration of bioinformatics to biodegradation.
Arora PK, Bae H., Biol Proced Online 16(), 2014
PMID: 24808763
Alcanivorax borkumensis produces an extracellular siderophore in iron-limitation condition maintaining the hydrocarbon-degradation efficiency.
Denaro R, Crisafi F, Russo D, Genovese M, Messina E, Genovese L, Carbone M, Ciavatta ML, Ferrer M, Golyshin P, Yakimov MM., Mar Genomics 17(), 2014
PMID: 25088485
Microbial transformation of the Deepwater Horizon oil spill-past, present, and future perspectives.
Kimes NE, Callaghan AV, Suflita JM, Morris PJ., Front Microbiol 5(), 2014
PMID: 25477866
Genome Sequence of the Petroleum Hydrocarbon-Degrading Bacterium Alcanivorax sp. Strain 97CO-5.
Luan X, Cui Z, Gao W, Li Q, Yin X, Zheng L., Genome Announc 2(6), 2014
PMID: 25502673
The long-chain alkane metabolism network of Alcanivorax dieselolei.
Wang W, Shao Z., Nat Commun 5(), 2014
PMID: 25502912
The translational repressor Crc controls the Pseudomonas putida benzoate and alkane catabolic pathways using a multi-tier regulation strategy.
Hernández-Arranz S, Moreno R, Rojo F., Environ Microbiol 15(1), 2013
PMID: 22925411
Microbial communities related to volatile organic compound emission in automobile air conditioning units.
Diekmann N, Burghartz M, Remus L, Kaufholz AL, Nawrath T, Rohde M, Schulz S, Roselius L, Schaper J, Mamber O, Jahn D, Jahn M., Appl Microbiol Biotechnol 97(19), 2013
PMID: 23179618
Metagenomic analysis reveals the prevalence of biodegradation genes for organic pollutants in activated sludge.
Fang H, Cai L, Yu Y, Zhang T., Bioresour Technol 129(), 2013
PMID: 23247148
Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.
Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lünsdorf H, Fernández M, Juárez S, Ciordia S, Singer A, Kagan O, Egorova O, Petit PA, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martínez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN., Nat Commun 4(), 2013
PMID: 23877221
Emerging trends in genomic approaches for microbial bioprospecting.
Akondi KB, Lakshmi VV., OMICS 17(2), 2013
PMID: 23308385
Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill.
Kimes NE, Callaghan AV, Aktas DF, Smith WL, Sunner J, Golding B, Drozdowska M, Hazen TC, Suflita JM, Morris PJ., Front Microbiol 4(), 2013
PMID: 23508965
The genome sequence of the hydrocarbon-degrading Acinetobacter venetianus VE-C3.
Fondi M, Rizzi E, Emiliani G, Orlandini V, Berna L, Papaleo MC, Perrin E, Maida I, Corti G, De Bellis G, Baldi F, Dijkshoorn L, Vaneechoutte M, Fani R., Res Microbiol 164(5), 2013
PMID: 23528645
Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.
Kisand V, Lettieri T., BMC Genomics 14(), 2013
PMID: 23547799
Adaptation of the hydrocarbonoclastic bacterium Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds: a physiological and transcriptomic approach.
Naether DJ, Slawtschew S, Stasik S, Engel M, Olzog M, Wick LY, Timmis KN, Heipieper HJ., Appl Environ Microbiol 79(14), 2013
PMID: 23645199
Identity and mechanisms of alkane-oxidizing metalloenzymes from deep-sea hydrothermal vents.
Bertrand EM, Keddis R, Groves JT, Vetriani C, Austin RN., Front Microbiol 4(), 2013
PMID: 23825470
Enzymes and genes involved in aerobic alkane degradation.
Wang W, Shao Z., Front Microbiol 4(), 2013
PMID: 23755043
Acyltransferases in bacteria.
Röttig A, Steinbüchel A., Microbiol Mol Biol Rev 77(2), 2013
PMID: 23699259
Alcanivorax marinus sp. nov., isolated from deep-sea water.
Lai Q, Wang J, Gu L, Zheng T, Shao Z., Int J Syst Evol Microbiol 63(pt 12), 2013
PMID: 23847282
The genome of the moderate halophile Amycolicicoccus subflavus DQS3-9A1(T) reveals four alkane hydroxylation systems and provides some clues on the genetic basis for its adaptation to a petroleum environment.
Nie Y, Fang H, Li Y, Chi CQ, Tang YQ, Wu XL., PLoS One 8(8), 2013
PMID: 23967144
Determining the metabolic footprints of hydrocarbon degradation using multivariate analysis.
Smith RJ, Jeffries TC, Adetutu EM, Fairweather PG, Mitchell JG., PLoS One 8(11), 2013
PMID: 24282619
Multilocus sequence analysis of the family Halomonadaceae.
de la Haba RR, Márquez MC, Papke RT, Ventosa A., Int J Syst Evol Microbiol 62(pt 3), 2012
PMID: 21478390
Cloning and expression of alkane hydroxylase-1 from Alcanivorax borkumensis in Escherichia coli.
Eidani SZ, Shahraki MK, Gasemisakha F, Hahsemi M, Bambai B., Toxicol Ind Health 28(6), 2012
PMID: 22064680
Genes involved in alkane degradation in the Alcanivorax hongdengensis strain A-11-3.
Wang W, Shao Z., Appl Microbiol Biotechnol 94(2), 2012
PMID: 22207216
Metagenomic analysis of the bioremediation of diesel-contaminated Canadian high arctic soils.
Yergeau E, Sanschagrin S, Beaumier D, Greer CW., PLoS One 7(1), 2012
PMID: 22253877
The genome sequence of Polymorphum gilvum SL003B-26A1(T) reveals its genetic basis for crude oil degradation and adaptation to the saline soil.
Nie Y, Tang YQ, Li Y, Chi CQ, Cai M, Wu XL., PLoS One 7(2), 2012
PMID: 22359583
Diversity of flavin-binding monooxygenase genes (almA) in marine bacteria capable of degradation long-chain alkanes.
Wang W, Shao Z., FEMS Microbiol Ecol 80(3), 2012
PMID: 22304419
Structural and thermodynamic characterization of the interaction between two periplasmic Treponema pallidum lipoproteins that are components of a TPR-protein-associated TRAP transporter (TPAT).
Brautigam CA, Deka RK, Schuck P, Tomchick DR, Norgard MV., J Mol Biol 420(1-2), 2012
PMID: 22504226
Composition and dynamics of biostimulated indigenous oil-degrading microbial consortia from the Irish, North and Mediterranean Seas: a mesocosm study.
Gertler C, Näther DJ, Cappello S, Gerdts G, Quilliam RS, Yakimov MM, Golyshin PN., FEMS Microbiol Ecol 81(3), 2012
PMID: 22462472
Alkane biodegradation genes from chronically polluted subantarctic coastal sediments and their shifts in response to oil exposure.
Guibert LM, Loviso CL, Marcos MS, Commendatore MG, Dionisi HM, Lozada M., Microb Ecol 64(3), 2012
PMID: 22580956
Marine crude-oil biodegradation: a central role for interspecies interactions.
McGenity TJ, Folwell BD, McKew BA, Sanni GO., Aquat Biosyst 8(1), 2012
PMID: 22591596
Proteogenomic elucidation of the initial steps in the benzene degradation pathway of a novel halophile, Arhodomonas sp. strain Rozel, isolated from a hypersaline environment.
Dalvi S, Azetsu S, Patrauchan MA, Aktas DF, Fathepure BZ., Appl Environ Microbiol 78(20), 2012
PMID: 22885747
Biochemical characterization of two recombinant ferredoxin reductases from Alcanivorax borkumensis SK2.
Teimoori A, Ahmadian S, Madadkar-Sobhani A., Biotechnol Appl Biochem 59(6), 2012
PMID: 23586955
Prokaryotic caspase homologs: phylogenetic patterns and functional characteristics reveal considerable diversity.
Asplund-Samuelsson J, Bergman B, Larsson J., PLoS One 7(11), 2012
PMID: 23185476
Cells dispersed from Marinobacter hydrocarbonoclasticus SP17 biofilm exhibit a specific protein profile associated with a higher ability to reinitiate biofilm development at the hexadecane-water interface.
Vaysse PJ, Sivadon P, Goulas P, Grimaud R., Environ Microbiol 13(3), 2011
PMID: 21087383
A halotolerant Alcanivorax sp. strain with potential application in saline soil remediation.
Dastgheib SM, Amoozegar MA, Khajeh K, Ventosa A., Appl Microbiol Biotechnol 90(1), 2011
PMID: 21153810
The 'LipoYeasts' project: using the oleaginous yeast Yarrowia lipolytica in combination with specific bacterial genes for the bioconversion of lipids, fats and oils into high-value products.
Sabirova JS, Haddouche R, Van Bogaert I, Mulaa F, Verstraete W, Timmis K, Schmidt-Dannert C, Nicaud J, Soetaert W., Microb Biotechnol 4(1), 2011
PMID: 21255371
The marine isolate Novosphingobium sp. PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source.
Notomista E, Pennacchio F, Cafaro V, Smaldone G, Izzo V, Troncone L, Varcamonti M, Di Donato A., Microb Ecol 61(3), 2011
PMID: 21258788
Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5.
Liu C, Wang W, Wu Y, Zhou Z, Lai Q, Shao Z., Environ Microbiol 13(5), 2011
PMID: 21261799
Bacterial diversity of lonar soda lake of India.
Deshmukh KB, Pathak AP, Karuppayil MS., Indian J Microbiol 51(1), 2011
PMID: 22282637
Natural-born eaters.
Fox JL., Nat Biotechnol 29(2), 2011
PMID: 21301429
Physiological and metabolic responses for hexadecane degradation in Acinetobacter oleivorans DR1.
Jung J, Noh J, Park W., J Microbiol 49(2), 2011
PMID: 21538240
Transcriptional profiling of the marine oil-degrading bacterium Alcanivorax borkumensis during growth on n-alkanes.
Sabirova JS, Becker A, Lünsdorf H, Nicaud JM, Timmis KN, Golyshin PN., FEMS Microbiol Lett 319(2), 2011
PMID: 21470299
Rubredoxin reductase from Alcanivorax borkumensis: expression and characterization.
Teimoori A, Ahmadian S, Madadkar-Sobhani A, Bambai B., Biotechnol Prog 27(5), 2011
PMID: 21714118
Development of bioreporter assays for the detection of bioavailability of long-chain alkanes based on the marine bacterium Alcanivorax borkumensis strain SK2.
Kumari R, Tecon R, Beggah S, Rutler R, Arey JS, van der Meer JR., Environ Microbiol 13(10), 2011
PMID: 21895911
Engineering microbes for tolerance to next-generation biofuels.
Dunlop MJ., Biotechnol Biofuels 4(), 2011
PMID: 21936941
First identification and functional analysis of a histidine triad nucleotide binding protein in an invertebrate species Haliotis diversicolor supertexta.
Wu L, Wu X, Deng H, Huang Y., Dev Comp Immunol 34(1), 2010
PMID: 19720079
Analysis of lipid export in hydrocarbonoclastic bacteria of the genus Alcanivorax: identification of lipid export-negative mutants of Alcanivorax borkumensis SK2 and Alcanivorax jadensis T9.
Manilla-Pérez E, Reers C, Baumgart M, Hetzler S, Reichelt R, Malkus U, Kalscheuer R, Wältermann M, Steinbüchel A., J Bacteriol 192(3), 2010
PMID: 19933359
Production of a recombinant alkane hydroxylase (AlkB2) from Alcanivorax borkumensis.
Miri M, Bambai B, Tabandeh F, Sadeghizadeh M, Kamali N., Biotechnol Lett 32(4), 2010
PMID: 19953301
Advances in molecular and "-omics" technologies to gauge microbial communities and bioremediation at xenobiotic/anthropogen contaminated sites.
Desai C, Pathak H, Madamwar D., Bioresour Technol 101(6), 2010
PMID: 19962886
Behavior of Marinobacter hydrocarbonoclasticus SP17 cells during initiation of biofilm formation at the alkane-water interface.
Klein B, Bouriat P, Goulas P, Grimaud R., Biotechnol Bioeng 105(3), 2010
PMID: 19816979
Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean.
Wang L, Wang W, Lai Q, Shao Z., Environ Microbiol 12(5), 2010
PMID: 20148932
Isolation and characterization of a mutant of the marine bacterium Alcanivorax borkumensis SK2 defective in lipid biosynthesis.
Manilla-Pérez E, Lange AB, Hetzler S, Wältermann M, Kalscheuer R, Steinbüchel A., Appl Environ Microbiol 76(9), 2010
PMID: 20305021
Occurrence, production, and export of lipophilic compounds by hydrocarbonoclastic marine bacteria and their potential use to produce bulk chemicals from hydrocarbons.
Manilla-Pérez E, Lange AB, Hetzler S, Steinbüchel A., Appl Microbiol Biotechnol 86(6), 2010
PMID: 20354694
'Slick' operation.
Seth-Smith H., Nat Rev Microbiol 8(8), 2010
PMID: 20634808
Marine microbial genomics in Europe: current status and perspectives.
Glöckner FO, Joint I., Microb Biotechnol 3(5), 2010
PMID: 20953416
Vertical distribution and phylogenetic composition of bacteria in the Eastern Tropical North Pacific Ocean.
Ma Y, Zeng Y, Jiao N, Shi Y, Hong N., Microbiol Res 164(6), 2009
PMID: 18387795
Identification of outer membrane proteins with emulsifying activity by prediction of beta-barrel regions.
Walzer G, Rosenberg E, Ron EZ., J Microbiol Methods 76(1), 2009
PMID: 18848588
Systemic approaches to biodegradation.
Trigo A, Valencia A, Cases I., FEMS Microbiol Rev 33(1), 2009
PMID: 19054119
Research progress in genomics of environmental and industrial microorganisms.
Wang L, Liu B, Zhou Z., Sci China C Life Sci 52(1), 2009
PMID: 19152085
The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A., J Biotechnol 140(1-2), 2009
PMID: 19297685
Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials.
Gertler C, Gerdts G, Timmis KN, Yakimov MM, Golyshin PN., J Appl Microbiol 107(2), 2009
PMID: 19302488
Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.
Gertler C, Gerdts G, Timmis KN, Golyshin PN., FEMS Microbiol Ecol 69(2), 2009
PMID: 19496821
Comprehensive analyses of transport proteins encoded within the genome of "Aromatoleum aromaticum" strain EbN1.
Tamang DG, Rabus R, Barabote RD, Saier MH., J Membr Biol 229(2), 2009
PMID: 19506936
Autochthonous bioaugmentation and its possible application to oil spills
Hosokawa R, Nagai M, Morikawa M, Okuyama H., World J Microbiol Biotechnol 25(9), 2009
PMID: IND44243590
Degradation of alkanes by bacteria.
Rojo F., Environ Microbiol 11(10), 2009
PMID: 19807712
Proteomic investigation of enzymes involved in 2-ethylhexyl nitrate biodegradation in Mycobacterium austroafricanum IFP 2173.
Nicolau E, Kuhn L, Marchal R, Jouanneau Y., Res Microbiol 160(10), 2009
PMID: 19840846
Hydrocarbon-degrading bacteria: the oil-spill clean-up crew.
Brooijmans RJ, Pastink MI, Siezen RJ., Microb Biotechnol 2(6), 2009
PMID: 21255292
Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1.
Grundmann O, Behrends A, Rabus R, Amann J, Halder T, Heider J, Widdel F., Environ Microbiol 10(2), 2008
PMID: 17961174
Global features of the Alcanivorax borkumensis SK2 genome.
Reva ON, Hallin PF, Willenbrock H, Sicheritz-Ponten T, Tümmler B, Ussery DW., Environ Microbiol 10(3), 2008
PMID: 18081853
Bacterial acyltransferases as an alternative for lipase-catalyzed acylation for the production of oleochemicals and fuels.
Stöveken T, Steinbüchel A., Angew Chem Int Ed Engl 47(20), 2008
PMID: 18399520
Empowering marine science through genomics.
Volckaert FA, Barbier M, Canário AV, Olsen JL, Wesnigk J, Clark M, Boyen C., Mar Genomics 1(1), 2008
PMID: 21798151
Proteomics of marine bacteria.
Schweder T, Markert S, Hecker M., Electrophoresis 29(12), 2008
PMID: 18494036
Emerging high-throughput approaches to analyze bioremediation of sites contaminated with hazardous and/or recalcitrant wastes.
Stenuit B, Eyers L, Schuler L, Agathos SN, George I., Biotechnol Adv 26(6), 2008
PMID: 18725284
Tree of life based on genome context networks.
Ding G, Yu Z, Zhao J, Wang Z, Li Y, Xing X, Wang C, Liu L, Li Y., PLoS One 3(10), 2008
PMID: 18852873
Systems biology approaches to bioremediation.
de Lorenzo V., Curr Opin Biotechnol 19(6), 2008
PMID: 19000761
Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.
Kalscheuer R, Stöveken T, Malkus U, Reichelt R, Golyshin PN, Sabirova JS, Ferrer M, Timmis KN, Steinbüchel A., J Bacteriol 189(3), 2007
PMID: 17122340
Ocean's elevenses.
Seth-Smith H., Nat Rev Microbiol 5(1), 2007
PMID: 17171852
The impact of genome analyses on our understanding of ammonia-oxidizing bacteria.
Arp DJ, Chain PS, Klotz MG., Annu Rev Microbiol 61(), 2007
PMID: 17506671
Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874.
Throne-Holst M, Wentzel A, Ellingsen TE, Kotlar HK, Zotchev SB., Appl Environ Microbiol 73(10), 2007
PMID: 17400787
Obligate oil-degrading marine bacteria.
Yakimov MM, Timmis KN, Golyshin PN., Curr Opin Biotechnol 18(3), 2007
PMID: 17493798
Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria.
McKew BA, Coulon F, Yakimov MM, Denaro R, Genovese M, Smith CJ, Osborn AM, Timmis KN, McGenity TJ., Environ Microbiol 9(6), 2007
PMID: 17504493
Functional proteomic view of metabolic regulation in "Aromatoleum aromaticum" strain EbN1.
Wöhlbrand L, Kallerhoff B, Lange D, Hufnagel P, Thiermann J, Reinhardt R, Rabus R., Proteomics 7(13), 2007
PMID: 17549795
Bacterial metabolism of long-chain n-alkanes.
Wentzel A, Ellingsen TE, Kotlar HK, Zotchev SB, Throne-Holst M., Appl Microbiol Biotechnol 76(6), 2007
PMID: 17673997
Evolution of the chaperone/usher assembly pathway: fimbrial classification goes Greek.
Nuccio SP, Bäumler AJ., Microbiol Mol Biol Rev 71(4), 2007
PMID: 18063717
Blueprint of an oil-eating bacterium.
de Lorenzo V., Nat Biotechnol 24(8), 2006
PMID: 16900140
Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2.
Sabirova JS, Ferrer M, Lünsdorf H, Wray V, Kalscheuer R, Steinbüchel A, Timmis KN, Golyshin PN., J Bacteriol 188(24), 2006
PMID: 16997960
A square archaeon, the smallest eukaryote and the largest bacteria.
Galperin MY., Environ Microbiol 8(10), 2006
PMID: 16958749

51 References

Daten bereitgestellt von Europe PubMed Central.

Evidence for in situ crude oil biodegradation after the Prestige oil spill.
Medina-Bellver JI, Marin P, Delgado A, Rodriguez-Sanchez A, Reyes E, Ramos JL, Marques S., Environ. Microbiol. 7(6), 2005
PMID: 15892696
Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium.
Yakimov MM, Golyshin PN, Lang S, Moore ER, Abraham WR, Lunsdorf H, Timmis KN., Int. J. Syst. Bacteriol. 48 Pt 2(), 1998
PMID: 9731272
Petroleum biodegradation in marine environments.
Harayama S, Kishira H, Kasai Y, Shutsubo K., J. Mol. Microbiol. Biotechnol. 1(1), 1999
PMID: 10941786
Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident.
Kasai Y, Kishira H, Syutsubo K, Harayama S., Environ. Microbiol. 3(4), 2001
PMID: 11359510
Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation.
Hara A, Syutsubo K, Harayama S., Environ. Microbiol. 5(9), 2003
PMID: 12919410
Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons.
Yakimov MM, Denaro R, Genovese M, Cappello S, D'Auria G, Chernikova TN, Timmis KN, Golyshin PN, Giluliano L., Environ. Microbiol. 7(9), 2005
PMID: 16104865
Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil.
Roling WF, Milner MG, Jones DM, Fratepietro F, Swannell RP, Daniel F, Head IM., Appl. Environ. Microbiol. 70(5), 2004
PMID: 15128509
Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.
Golyshin PN, Martins Dos Santos VA, Kaiser O, Ferrer M, Sabirova YS, Lunsdorf H, Chernikova TN, Golyshina OV, Yakimov MM, Puhler A, Timmis KN., J. Biotechnol. 106(2-3), 2003
PMID: 14651863
Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains.
Syutsubo K, Kishira H, Harayama S., Environ. Microbiol. 3(6), 2001
PMID: 11472502
Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis.
van Beilen JB, Marin MM, Smits TH, Rothlisberger M, Franchini AG, Witholt B, Rojo F., Environ. Microbiol. 6(3), 2004
PMID: 14871210
Novel glycine containing glucolipids from the alkane using bacterium Alcanivorax borkumensis.
Abraham WR, Meyer H, Yakimov M., Biochim. Biophys. Acta 1393(1), 1998
PMID: 9714737
Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2.
Hara A, Baik SH, Syutsubo K, Misawa N, Smits TH, van Beilen JB, Harayama S., Environ. Microbiol. 6(3), 2004
PMID: 14871203
The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expression.
Kok M, Oldenhuis R, van der Linden MP, Raatjes P, Kingma J, van Lelyveld PH, Witholt B., J. Biol. Chem. 264(10), 1989
PMID: 2647718
Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes.
van Beilen JB, Panke S, Lucchini S, Franchini AG, Rothlisberger M, Witholt B., Microbiology (Reading, Engl.) 147(Pt 6), 2001
PMID: 11390693

JB, Oil Gas Sci. Technol. 58(), 2003
A complex signaling module governs the activity of MalT, the prototype of an emerging transactivator family.
Danot O., Proc. Natl. Acad. Sci. U.S.A. 98(2), 2001
PMID: 11209048
Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteria.
Smits TH, Balada SB, Witholt B, van Beilen JB., J. Bacteriol. 184(6), 2002
PMID: 11872725
Identification of an amino acid position that determines the substrate range of integral membrane alkane hydroxylases.
van Beilen JB, Smits TH, Roos FF, Brunner T, Balada SB, Rothlisberger M, Witholt B., J. Bacteriol. 187(1), 2005
PMID: 15601691
Environmental genome shotgun sequencing of the Sargasso Sea.
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO., Science 304(5667), 2004
PMID: 15001713
Biodegradation of n-alkylcycloalkanes and n-alkylbenzenes via new pathways in Alcanivorax sp. strain MBIC 4326.
Dutta TK, Harayama S., Appl. Environ. Microbiol. 67(4), 2001
PMID: 11282659
Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization.
Sabirova JS, Ferrer M, Regenhardt D, Timmis KN, Golyshin PN., J. Bacteriol. 188(11), 2006
PMID: 16707669

T, Res. Commun. 286(), 2001

A, Appl. Microbiol. Biotechnol. 37(), 1992
Isolation, characterization, and expression in Escherichia coli of the Pseudomonas aeruginosa rhlAB genes encoding a rhamnosyltransferase involved in rhamnolipid biosurfactant synthesis.
Ochsner UA, Fiechter A, Reiser J., J. Biol. Chem. 269(31), 1994
PMID: 8051059
The active component of the bioemulsifier alasan from Acinetobacter radioresistens KA53 is an OmpA-like protein.
Toren A, Orr E, Paitan Y, Ron EZ, Rosenberg E., J. Bacteriol. 184(1), 2002
PMID: 11741856
Natural roles of biosurfactants.
Ron EZ, Rosenberg E., Environ. Microbiol. 3(4), 2001
PMID: 11359508
Type IV pili-related natural transformation systems: DNA transport in mesophilic and thermophilic bacteria.
Averhoff B, Friedrich A., Arch. Microbiol. 180(6), 2003
PMID: 14593449

T, Aquat. Microb. Ecol. 31(), 2003
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.
Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Pikina A, Galperin MY, Koonin EV, Makarova KS, Omelchenko MV, Sorokin A, Wolf YI, Li QX, Keum YS, Campbell S, Denery J, Aizawa S, Shibata S, Malahoff A, Alam M., Proc. Natl. Acad. Sci. U.S.A. 101(52), 2004
PMID: 15596722
Marine microorganisms make a meal of oil.
Head IM, Jones DM, Roling WF., Nat. Rev. Microbiol. 4(3), 2006
PMID: 16489346
Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments.
Dyksterhouse SE, Gray JP, Herwig RP, Lara JC, Staley JT., Int. J. Syst. Bacteriol. 45(1), 1995
PMID: 7857792
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
Yanisch-Perron C, Vieira J, Messing J., Gene 33(1), 1985
PMID: 2985470
Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
Ewing B, Hillier L, Wendl MC, Green P., Genome Res. 8(3), 1998
PMID: 9521921
Base-calling of automated sequencer traces using phred. II. Error probabilities.
Ewing B, Green P., Genome Res. 8(3), 1998
PMID: 9521922
Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique.
Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651855
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Automated finishing with autofinish.
Gordon D, Desmarais C, Green P., Genome Res. 11(4), 2001
PMID: 11282977
BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bartels D, Kespohl S, Albaum S, Druke T, Goesmann A, Herold J, Kaiser O, Puhler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC., Bioinformatics 21(7), 2004
PMID: 15514001
Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library.
Tauch A, Homann I, Mormann S, Ruberg S, Billault A, Bathe B, Brand S, Brockmann-Gretza O, Ruckert C, Schischka N, Wrenger C, Hoheisel J, Mockel B, Huthmacher K, Pfefferle W, Puhler A, Kalinowski J., J. Biotechnol. 95(1), 2002
PMID: 11879709
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
A probabilistic method for identifying start codons in bacterial genomes.
Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL., Bioinformatics 17(12), 2001
PMID: 11751220
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
The COG database: an updated version includes eukaryotes.
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA., BMC Bioinformatics 4(), 2003
PMID: 12969510
WormBase: a multi-species resource for nematode biology and genomics.
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681445
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG., Nucleic Acids Res. 25(24), 1997
PMID: 9396791
WWW-query: an on-line retrieval system for biological sequence banks.
Perriere G, Gouy M., Biochimie 78(5), 1996
PMID: 8905155
MEGA2: molecular evolutionary genetics analysis software.
Kumar S, Tamura K, Jakobsen IB, Nei M., Bioinformatics 17(12), 2001
PMID: 11751241
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.
Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ, Lagrou M, Garber RL, Goltry L, Tolentino E, Westbrock-Wadman S, Yuan Y, Brody LL, Coulter SN, Folger KR, Kas A, Larbig K, Lim R, Smith K, Spencer D, Wong GK, Wu Z, Paulsen IT, Reizer J, Saier MH, Hancock RE, Lory S, Olson MV., Nature 406(6799), 2000
PMID: 10984043
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.
Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Dusterhoft A, Tummler B, Fraser CM., Environ. Microbiol. 4(12), 2002
PMID: 12534463
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