Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core
Mann RA, Smits THM, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2013)
PLOS ONE 8(2): e55644.
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Autor*in
Mann, Rachel A;
Smits, Theo H M;
Bühlmann, Andreas;
Blom, JochenUniBi;
Goesmann, AlexanderUniBi 
;
Frey, Jürg E;
Plummer, Kim M;
Beer, Steven V;
Luck, Joanne;
Duffy, Brion;
Rodoni, Brendan
;
Frey, Jürg E;
Plummer, Kim M;
Beer, Steven V;
Luck, Joanne;
Duffy, Brion;
Rodoni, BrendanEinrichtung
Abstract / Bemerkung
The plant pathogen Erwinia amylovora can be divided into two host-specific groupings; strains infecting a broad range of hosts within the Rosaceae subfamily Spiraeoideae (e.g., Malus, Pyrus, Crataegus, Sorbus) and strains infecting Rubus (raspberries and blackberries). Comparative genomic analysis of 12 strains representing distinct populations (e.g., geographic, temporal, host origin) of E. amylovora was used to describe the pan-genome of this major pathogen. The pan-genome contains 5751 coding sequences and is highly conserved relative to other phytopathogenic bacteria comprising on average 89% conserved, core genes. The chromosomes of Spiraeoideae-infecting strains were highly homogeneous, while greater genetic diversity was observed between Spiraeoideae- and Rubus-infecting strains (and among individual Rubus-infecting strains), the majority of which was attributed to variable genomic islands. Based on genomic distance scores and phylogenetic analysis, the Rubus-infecting strain ATCC BAA-2158 was genetically more closely related to the Spiraeoideae-infecting strains of E. amylovora than it was to the other Rubus-infecting strains. Analysis of the accessory genomes of Spiraeoideae- and Rubus-infecting strains has identified putative host-specific determinants including variation in the effector protein HopX1(Ea) and a putative secondary metabolite pathway only present in Rubus-infecting strains.
Erscheinungsjahr
2013
Zeitschriftentitel
PLOS ONE
Band
8
Ausgabe
2
Art.-Nr.
e55644
ISSN
1932-6203
eISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2557938
Zitieren
Mann RA, Smits THM, Bühlmann A, et al. Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE. 2013;8(2): e55644.
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE, 8(2), e55644. doi:10.1371/journal.pone.0055644
Mann, Rachel A, Smits, Theo H M, Bühlmann, Andreas, Blom, Jochen, Goesmann, Alexander, Frey, Jürg E, Plummer, Kim M, et al. 2013. “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”. PLOS ONE 8 (2): e55644.
Mann, R. A., Smits, T. H. M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J. E., Plummer, K. M., Beer, S. V., Luck, J., Duffy, B., et al. (2013). Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE 8:e55644.
Mann, R.A., et al., 2013. Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE, 8(2): e55644.
R.A. Mann, et al., “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”, PLOS ONE, vol. 8, 2013, : e55644.
Mann, R.A., Smits, T.H.M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J.E., Plummer, K.M., Beer, S.V., Luck, J., Duffy, B., Rodoni, B.: Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE. 8, : e55644 (2013).
Mann, Rachel A, Smits, Theo H M, Bühlmann, Andreas, Blom, Jochen, Goesmann, Alexander, Frey, Jürg E, Plummer, Kim M, Beer, Steven V, Luck, Joanne, Duffy, Brion, and Rodoni, Brendan. “Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core”. PLOS ONE 8.2 (2013): e55644.
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Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity.
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Le feu bactérien en France. II. - Caractères des souches d’Erwinia amylovora (Burril) Winslow et al., 1920, isolées du foyer franco-belge
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AUTHOR UNKNOWN, 0
Identification by PCR analysis on plasmid pEA29 of isolates of Erwinia amylovora responsible of an outbreak in Central Europe
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Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence.
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Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates.
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Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.
Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V., Genome Biol. 11(10), 2010
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Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification.
Deng X, Phillippy AM, Li Z, Salzberg SL, Zhang W., BMC Genomics 11(), 2010
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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model.
Boissy R, Ahmed A, Janto B, Earl J, Hall BG, Hogg JS, Pusch GD, Hiller LN, Powell E, Hayes J, Yu S, Kathju S, Stoodley P, Post JC, Ehrlich GD, Hu FZ., BMC Genomics 12(), 2011
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Boissy R, Ahmed A, Janto B, Earl J, Hall BG, Hogg JS, Pusch GD, Hiller LN, Powell E, Hayes J, Yu S, Kathju S, Stoodley P, Post JC, Ehrlich GD, Hu FZ., BMC Genomics 12(), 2011
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CAMBer: an approach to support comparative analysis of multiple bacterial strains
AUTHOR UNKNOWN, 2011
AUTHOR UNKNOWN, 2011
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