The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

Gross R, Guzman CA, Sebaihia M, Martins dos Santos VAP, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, et al. (2008)
BMC Genomics 9(1): 449.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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urn:nbn:de:0070-pub-17832920
Autor*in
Gross, Roy; Guzman, Carlos A.; Sebaihia, Mohammed; Martins dos Santos, Vítor A. P.; Pieper, Dietmar H.; Koebnik, Ralf; Lechner, Melanie; Bartels, Daniela; Buhrmester, Jens; Choudhuri, Jomuna V.; Ebensen, Thomas; Gaigalat, Lars
Alle
Einrichtung
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Fakultät für Biologie
Abstract / Bemerkung
Background: Bordetella petrii is the only environmental species hitherto found among the otherwise host-restricted and pathogenic members of the genus Bordetella. Phylogenetically, it connects the pathogenic Bordetellae and environmental bacteria of the genera Achromobacter and Alcaligenes, which are opportunistic pathogens. B. petrii strains have been isolated from very different environmental niches, including river sediment, polluted soil, marine sponges and a grass root. Recently, clinical isolates associated with bone degenerative disease or cystic fibrosis have also been described. Results: In this manuscript we present the results of the analysis of the completely annotated genome sequence of the B. petrii strain DSMZ12804. B. petrii has a mosaic genome of 5,287,950 bp harboring numerous mobile genetic elements, including seven large genomic islands. Four of them are highly related to the clc element of Pseudomonas knackmussii B13, which encodes genes involved in the degradation of aromatics. Though being an environmental isolate, the sequenced B. petrii strain also encodes proteins related to virulence factors of the pathogenic Bordetellae, including the filamentous hemagglutinin, which is a major colonization factor of B. pertussis, and the master virulence regulator BvgAS. However, it lacks all known toxins of the pathogenic Bordetellae. Conclusion: The genomic analysis suggests that B. petrii represents an evolutionary link between free-living environmental bacteria and the host-restricted obligate pathogenic Bordetellae. Its remarkable metabolic versatility may enable B. petrii to thrive in very different ecological niches.
Erscheinungsjahr
2008
Zeitschriftentitel
BMC Genomics
Band
9
Ausgabe
1
Art.-Nr.
449
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/1783292

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Gross R, Guzman CA, Sebaihia M, et al. The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics. 2008;9(1): 449.
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics, 9(1), 449. https://doi.org/10.1186/1471-2164-9-449
Gross, Roy, Guzman, Carlos A., Sebaihia, Mohammed, Martins dos Santos, Vítor A. P., Pieper, Dietmar H., Koebnik, Ralf, Lechner, Melanie, et al. 2008. “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”. BMC Genomics 9 (1): 449.
Gross, R., Guzman, C. A., Sebaihia, M., Martins dos Santos, V. A. P., Pieper, D. H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J. V., et al. (2008). The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics 9:449.
Gross, R., et al., 2008. The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics, 9(1): 449.
R. Gross, et al., “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”, BMC Genomics, vol. 9, 2008, : 449.
Gross, R., Guzman, C.A., Sebaihia, M., Martins dos Santos, V.A.P., Pieper, D.H., Koebnik, R., Lechner, M., Bartels, D., Buhrmester, J., Choudhuri, J.V., Ebensen, T., Gaigalat, L., Herrmann, S., Khachane, A.N., Larisch, C., Link, S., Linke, B., Meyer, F., Mormann, S., Nakunst, D., Rückert, C., Schneiker-Bekel, S., Schulze, K., Vorhölter, F.-J., Yevsa, T., Engle, J.T., Goldman, W.E., Pühler, A., Göbel, U.B., Goesmann, A., Blöcker, H., Kaiser, O., Martinez-Arias, R.: The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics. 9, : 449 (2008).
Gross, Roy, Guzman, Carlos A., Sebaihia, Mohammed, Martins dos Santos, Vítor A. P., Pieper, Dietmar H., Koebnik, Ralf, Lechner, Melanie, Bartels, Daniela, Buhrmester, Jens, Choudhuri, Jomuna V., Ebensen, Thomas, Gaigalat, Lars, Herrmann, Stefanie, Khachane, Amit N., Larisch, Christof, Link, Stefanie, Linke, Burkhard, Meyer, Folker, Mormann, Sascha, Nakunst, Diana, Rückert, Christian, Schneiker-Bekel, Susanne, Schulze, Kai, Vorhölter, Frank-Jörg, Yevsa, Tetyana, Engle, Jacquelyn T., Goldman, William E., Pühler, Alfred, Göbel, Ulf B., Goesmann, Alexander, Blöcker, Helmut, Kaiser, Olaf, and Martinez-Arias, Rosa. “The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae”. BMC Genomics 9.1 (2008): 449.
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40 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria.
Suvorova IA, Gelfand MS., Front Microbiol 10(), 2019
PMID: 30984152
Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal.
Cabello-Yeves PJ, Zemskaya TI, Rosselli R, Coutinho FH, Zakharenko AS, Blinov VV, Rodriguez-Valera F., Appl Environ Microbiol 84(1), 2018
PMID: 29079621
The Bordetella bronchiseptica nic locus encodes a nicotinic acid degradation pathway and the 6-hydroxynicotinate-responsive regulator BpsR.
Brickman TJ, Armstrong SK., Mol Microbiol 108(4), 2018
PMID: 29485696
Proteomic Adaptation of Australian Epidemic Bordetella pertussis.
Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R., Proteomics 18(8), 2018
PMID: 29464899
Periplasmic depolymerase provides insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides.
Liston SD, McMahon SA, Le Bas A, Suits MDL, Naismith JH, Whitfield C., Proc Natl Acad Sci U S A 115(21), 2018
PMID: 29735649
Environmental Origin of the Genus Bordetella.
Hamidou Soumana I, Linz B, Harvill ET., Front Microbiol 8(), 2017
PMID: 28174558
A pan-genomic approach to understand the basis of host adaptation in Achromobacter.
Jeukens J, Freschi L, Vincent AT, Emond-Rheault JG, Kukavica-Ibrulj I, Charette SJ, Levesque RC., Genome Biol Evol (), 2017
PMID: 28383665
Linking Microbial Community and Catabolic Gene Structures during the Adaptation of Three Contaminated Soils under Continuous Long-Term Pollutant Stress.
Lima-Morales D, Jáuregui R, Camarinha-Silva A, Geffers R, Pieper DH, Vilchez-Vargas R., Appl Environ Microbiol 82(7), 2016
PMID: 26850298
Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide.
Tabata M, Ohhata S, Nikawadori Y, Kishida K, Sato T, Kawasumi T, Kato H, Ohtsubo Y, Tsuda M, Nagata Y., DNA Res 23(6), 2016
PMID: 27581378
Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species.
Linz B, Ivanov YV, Preston A, Brinkac L, Parkhill J, Kim M, Harris SR, Goodfield LL, Fry NK, Gorringe AR, Nicholson TL, Register KB, Losada L, Harvill ET., BMC Genomics 17(1), 2016
PMID: 27716057
Genome-Wide Discovery of Putative sRNAs in Paracoccus denitrificans Expressed under Nitrous Oxide Emitting Conditions.
Gaimster H, Chalklen L, Alston M, Munnoch JT, Richardson DJ, Gates AJ, Rowley G., Front Microbiol 7(), 2016
PMID: 27895629
Drug Target Identification and Elucidation of Natural Inhibitors for Bordetella petrii: An In Silico Study.
Rath SN, Ray M, Pattnaik A, Pradhan SK., Genomics Inform 14(4), 2016
PMID: 28154518
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.
Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, Gjoksi B, Goesmann A, Greub G, Harshman K, Linke B, Mikulic J, Mueller L, Nicolas D, Robinson-Rechavi M, Rivolta C, Roggo C, Roy S, Sentchilo V, Siebenthal AV, Falquet L, van der Meer JR., Environ Microbiol 17(1), 2015
PMID: 24803113
Septic arthritis and osteomyelitis due to Bordetella petrii.
Nogi M, Bankowski MJ, Pien FD., J Clin Microbiol 53(3), 2015
PMID: 25540393
Whole-genome sequencing reveals the effect of vaccination on the evolution of Bordetella pertussis.
Xu Y, Liu B, Gröndahl-Yli-Hannuksila K, Tan Y, Feng L, Kallonen T, Wang L, Peng D, He Q, Wang L, Zhang S., Sci Rep 5(), 2015
PMID: 26283022
A newly discovered Bordetella species carries a transcriptionally active CRISPR-Cas with a small Cas9 endonuclease.
Ivanov YV, Shariat N, Register KB, Linz B, Rivera I, Hu K, Dudley EG, Harvill ET., BMC Genomics 16(), 2015
PMID: 26502932
Prevalence of Achromobacter xylosoxidans in pulmonary mucosa-associated lymphoid tissue lymphoma in different regions of Europe.
Adam P, Czapiewski P, Colak S, Kosmidis P, Tousseyn T, Sagaert X, Boudova L, Okoń K, Morresi-Hauf A, Agostinelli C, Pileri S, Pruneri G, Martinelli G, Du MQ, Fend F., Br J Haematol 164(6), 2014
PMID: 24372375
Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas.
Reinhard F, van der Meer JR., J Bacteriol 196(7), 2014
PMID: 24464463
Conjugative and mobilizable genomic islands in bacteria: evolution and diversity.
Bellanger X, Payot S, Leblond-Bourget N, Guédon G., FEMS Microbiol Rev 38(4), 2014
PMID: 24372381
Other Bordetellas, lessons for and from pertussis vaccines.
Guiso N, Hegerle N., Expert Rev Vaccines 13(9), 2014
PMID: 25034039
Insertion sequences shared by Bordetella species and implications for the biological diagnosis of pertussis syndrome.
Tizolova A, Guiso N, Guillot S., Eur J Clin Microbiol Infect Dis 32(1), 2013
PMID: 22886091
Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria.
Reinhard F, Miyazaki R, Pradervand N, van der Meer JR., Curr Biol 23(3), 2013
PMID: 23333318
Adaptability and persistence of the emerging pathogen Bordetella petrii.
Zelazny AM, Ding L, Goldberg JB, Mijares LA, Conlan S, Conville PS, Stock F, Ballentine SJ, Olivier KN, Sampaio EP, Murray PR, Holland SM., PLoS One 8(6), 2013
PMID: 23750235
Comparative genome characterization of Achromobacter members reveals potential genetic determinants facilitating the adaptation to a pathogenic lifestyle.
Li X, Hu Y, Gong J, Zhang L, Wang G., Appl Microbiol Biotechnol 97(14), 2013
PMID: 23749121
Bioremediation of organometallic compounds by bacterial degradation.
Shah J, Dahanukar N., Indian J Microbiol 52(2), 2012
PMID: 23729900
Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales.
Pérez-Pantoja D, Donoso R, Agulló L, Córdova M, Seeger M, Pieper DH, González B., Environ Microbiol 14(5), 2012
PMID: 22026719
Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element.
Miyazaki R, Minoia M, Pradervand N, Sulser S, Reinhard F, van der Meer JR., PLoS Genet 8(7), 2012
PMID: 22807690
Reduced set of virulence genes allows high accuracy prediction of bacterial pathogenicity in humans.
Iraola G, Vazquez G, Spangenberg L, Naya H., PLoS One 7(8), 2012
PMID: 22916122
Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens.
Park J, Zhang Y, Buboltz AM, Zhang X, Schuster SC, Ahuja U, Liu M, Miller JF, Sebaihia M, Bentley SD, Parkhill J, Harvill ET., BMC Genomics 13(), 2012
PMID: 23051057
Self-subunit swapping occurs in another gene type of cobalt nitrile hydratase.
Liu Y, Cui W, Xia Y, Cui Y, Kobayashi M, Zhou Z., PLoS One 7(11), 2012
PMID: 23226397
Bordetella petrii infection with long-lasting persistence in human.
Le Coustumier A, Njamkepo E, Cattoir V, Guillot S, Guiso N., Emerg Infect Dis 17(4), 2011
PMID: 21470449
Complete genome sequence of Pusillimonas sp. T7-7, a cold-tolerant diesel oil-degrading bacterium isolated from the Bohai Sea in China.
Cao B, Ma T, Ren Y, Ren Y, Li G, Li P, Guo X, Ding P, Feng L., J Bacteriol 193(15), 2011
PMID: 21622753
Molecular identification of bacteria by total sequence screening: determining the cause of death in ancient human subjects.
Thèves C, Senescau A, Vanin S, Keyser C, Ricaut FX, Alekseev AN, Dabernat H, Ludes B, Fabre R, Crubézy E., PLoS One 6(7), 2011
PMID: 21765907
A novel hydrolase identified by genomic-proteomic analysis of phenylurea herbicide mineralization by Variovorax sp. strain SRS16.
Bers K, Leroy B, Breugelmans P, Albers P, Lavigne R, Sørensen SR, Aamand J, De Mot R, Wattiez R, Springael D., Appl Environ Microbiol 77(24), 2011
PMID: 22003008
The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.
Janssen PJ, Van Houdt R, Moors H, Monsieurs P, Morin N, Michaux A, Benotmane MA, Leys N, Vallaeys T, Lapidus A, Monchy S, Médigue C, Taghavi S, McCorkle S, Dunn J, van der Lelie D, Mergeay M., PLoS One 5(5), 2010
PMID: 20463976
Resemblance and divergence: the "new" members of the genus Bordetella.
Gross R, Keidel K, Schmitt K., Med Microbiol Immunol 199(3), 2010
PMID: 20390299
New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.
Van Houdt R, Monchy S, Leys N, Mergeay M., Antonie Van Leeuwenhoek 96(2), 2009
PMID: 19390985
Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13.
Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, van der Meer JR., Mol Microbiol 72(5), 2009
PMID: 19432799
Genomic island excisions in Bordetella petrii.
Lechner M, Schmitt K, Bauer S, Hot D, Hubans C, Levillain E, Locht C, Lemoine Y, Gross R., BMC Microbiol 9(), 2009
PMID: 19615092
Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome.
Kunze M, Zerlin KF, Retzlaff A, Pohl JO, Schmidt E, Janssen DB, Vilchez-Vargas R, Pieper DH, Reineke W., Microbiology 155(pt 12), 2009
PMID: 19744988

53 References

Daten bereitgestellt von Europe PubMed Central.

Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies.
Mattoo S, Cherry JD., Clin. Microbiol. Rev. 18(2), 2005
PMID: 15831828
Evolutionary trends in the genus Bordetella.
Gerlach G, von Wintzingerode F, Middendorf B, Gross R., Microbes Infect. 3(1), 2001
PMID: 11226855
Unexpected similarities between Bordetella avium and other pathogenic Bordetellae.
Spears PA, Temple LM, Miyamoto DM, Maskell DJ, Orndorff PE., Infect. Immun. 71(5), 2003
PMID: 12704133
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeno-Tarraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ., Nat. Genet. 35(1), 2003
PMID: 12910271
Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction.
Sebaihia M, Preston A, Maskell DJ, Kuzmiak H, Connell TD, King ND, Orndorff PE, Miyamoto DM, Thomson NR, Harris D, Goble A, Lord A, Murphy L, Quail MA, Rutter S, Squares R, Squares S, Woodward J, Parkhill J, Temple LM., J. Bacteriol. 188(16), 2006
PMID: 16885469
Bordetella species are distinguished by patterns of substantial gene loss and host adaptation.
Cummings CA, Brinig MM, Lepp PW, van de Pas S, Relman DA., J. Bacteriol. 186(5), 2004
PMID: 14973121
Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella.
von Wintzingerode F, Schattke A, Siddiqui RA, Rosick U, Gobel UB, Gross R., Int. J. Syst. Evol. Microbiol. 51(Pt 4), 2001
PMID: 11491321
Bioremediation of toluene and naphthalene: development and validation of a GC-FID method for their monitoring.
Bianchi F, Careri M, Mustat L, Malcevschi A, Musci M., Ann Chim 95(7-8), 2005
PMID: 16235785
Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella sp. and its bioremediation potential in soil.
Wang F, Grundmann S, Schmid M, Dorfler U, Roherer S, Charles Munch J, Hartmann A, Jiang X, Schroll R., Chemosphere 67(5), 2007
PMID: 17204305
Bordetella petrii clinical isolate.
Fry NK, Duncan J, Malnick H, Warner M, Smith AJ, Jackson MS, Ayoub A., Emerging Infect. Dis. 11(7), 2005
PMID: 16022798
Bordetella petrii from a clinical sample in Australia: isolation and molecular identification.
Stark D, Riley LA, Harkness J, Marriott D., J. Med. Microbiol. 56(Pt 3), 2007
PMID: 17314377
Identification of Bordetella spp. in respiratory specimens from individuals with cystic fibrosis.
Spilker T, Liwienski AA, LiPuma JJ., Clin. Microbiol. Infect. 14(5), 2008
PMID: 18325036
A molecular systematic survey of cultured microbial associates of deep-water marine invertebrates.
Sfanos K, Harmody D, Dang P, Ledger A, Pomponi S, McCarthy P, Lopez J., Syst. Appl. Microbiol. 28(3), 2005
PMID: 15900971
Identification of diazotrophs in the culturable bacterial community associated with roots of Lasiurus sindicus, a perennial grass of Thar Desert, India.
Chowdhury SP, Schmid M, Hartmann A, Tripathi AK., Microb. Ecol. 54(1), 2007
PMID: 17264993
Achromobacter xylosoxidans bacteremia: a 10-year analysis of 54 cases.
Gomez-Cerezo J, Suarez I, Rios JJ, Pena P, Garcia de Miguel MJ, de Jose M, Monteagudo O, Linares P, Barbado-Cano A, Vazquez JJ., Eur. J. Clin. Microbiol. Infect. Dis. 22(6), 2003
PMID: 12750959
Antibiotic treatment of multidrug-resistant organisms in cystic fibrosis.
Conway SP, Brownlee KG, Denton M, Peckham DG., Am J Respir Med 2(4), 2003
PMID: 14719998
Alcaligenes faecalis subsp. phenolicus subsp. nov. a phenol-degrading, denitrifying bacterium isolated from a graywater bioprocessor.
Rehfuss M, Urban J., Syst. Appl. Microbiol. 28(5), 2005
PMID: 16094869
Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil.
Vinas M, Sabate J, Espuny MJ, Solanas AM., Appl. Environ. Microbiol. 71(11), 2005
PMID: 16269736
The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties.
Gaillard M, Vallaeys T, Vorholter FJ, Minoia M, Werlen C, Sentchilo V, Puhler A, van der Meer JR., J. Bacteriol. 188(5), 2006
PMID: 16484212
Genomic islands and the evolution of catabolic pathways in bacteria.
van der Meer JR, Sentchilo V., Curr. Opin. Biotechnol. 14(3), 2003
PMID: 12849776
Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13.
Ravatn R, Studer S, Zehnder AJ, van der Meer JR., J. Bacteriol. 180(21), 1998
PMID: 9791097
The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids.
Toussaint A, Merlin C, Monchy S, Benotmane MA, Leplae R, Mergeay M, Springael D., Appl. Environ. Microbiol. 69(8), 2003
PMID: 12902278
Identification and characterization of Sulfolobus solfataricus D-gluconate dehydratase: a key enzyme in the non-phosphorylated Entner-Doudoroff pathway.
Kim S, Lee SB., Biochem. J. 387(Pt 1), 2005
PMID: 15509194
The role of pectic enzymes in plant pathogenesis
Collmer A, Keen NT., 1986
Molecular genetics of pathogenesis by soft rot Erwinias
Kotoujansky A., 1987
Synergism between Erwinia pectate lyase isoenzymes that depolymerize both pectate and pectin.
Bartling S, Wegener C, Olsen O., Microbiology (Reading, Engl.) 141 ( Pt 4)(), 1995
PMID: 7773390
Isolation of Erwinia chrysanthemi kduD mutants altered in pectin degradation.
Condemine G, Hugouvieux-Cotte-Pattat N, Robert-Baudouy J., J. Bacteriol. 165(3), 1986
PMID: 3949717
Identification and characterization of a cyanate permease in Escherichia coli K-12.
Sung YC, Fuchs JA., J. Bacteriol. 171(9), 1989
PMID: 2670891
Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region.
van der Meer JR, Frijters AC, Leveau JH, Eggen RI, Zehnder AJ, de Vos WM., J. Bacteriol. 173(12), 1991
PMID: 2050630
Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51.
van der Meer JR, Zehnder AJ, de Vos WM., J. Bacteriol. 173(22), 1991
PMID: 1657878
Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71.
Potrawfke T, Armengaud J, Wittich RM., J. Bacteriol. 183(3), 2001
PMID: 11208799
Amino acids in positions 48, 52, and 73 differentiate the substrate specificities of the highly homologous chlorocatechol 1,2-dioxygenases CbnA and TcbC.
Liu S, Ogawa N, Senda T, Hasebe A, Miyashita K., J. Bacteriol. 187(15), 2005
PMID: 16030237
Genetic and biochemical characterization of the broad spectrum chlorobenzene dioxygenase from Burkholderia sp. strain PS12--dechlorination of 1,2,4,5-tetrachlorobenzene.
Beil S, Happe B, Timmis KN, Pieper DH., Eur. J. Biochem. 247(1), 1997
PMID: 9249026
Biotransformation of various substituted aromatic compounds to chiral dihydrodihydroxy derivatives.
Raschke H, Meier M, Burken JG, Hany R, Muller MD, Van Der Meer JR, Kohler HP., Appl. Environ. Microbiol. 67(8), 2001
PMID: 11472901
Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes.
Beil S, Timmis KN, Pieper DH., J. Bacteriol. 181(1), 1999
PMID: 9864349
Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.
Jimenez JI, Minambres B, Garcia JL, Diaz E., Environ. Microbiol. 4(12), 2002
PMID: 12534466
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.
Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agullo L, Reyes VL, Hauser L, Cordova M, Gomez L, Gonzalez M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM., Proc. Natl. Acad. Sci. U.S.A. 103(42), 2006
PMID: 17030797
Purification and characterization of phenylacetate-coenzyme A ligase from a denitrifying Pseudomonas sp., an enzyme involved in the anaerobic degradation of phenylacetate.
Mohamed M el-S , Fuchs G., Arch. Microbiol. 159(6), 1993
PMID: 8352645
Novel aerobic 2-aminobenzoate metabolism. Purification and characterization of 2-aminobenzoate-CoA ligase, localisation of the gene on a 8-kbp plasmid, and cloning and sequencing of the gene from a denitrifying Pseudomonas sp.
Altenschmidt U, Fuchs G., Eur. J. Biochem. 205(2), 1992
PMID: 1315272
Synergistic epithelial responses to endotoxin and a naturally occurring muramyl peptide.
Flak TA, Heiss LN, Engle JT, Goldman WE., Infect. Immun. 68(3), 2000
PMID: 10678932
Bordetella pertussis, molecular pathogenesis under multiple aspects.
Locht C, Antoine R, Jacob-Dubuisson F., Curr. Opin. Microbiol. 4(1), 2001
PMID: 11173039
Regulation of bacterial virulence by two-component systems.
Beier D, Gross R., Curr. Opin. Microbiol. 9(2), 2006
PMID: 16481212
Species- and strain-specific control of a complex, flexible regulon by Bordetella BvgAS.
Cummings CA, Bootsma HJ, Relman DA, Miller JF., J. Bacteriol. 188(5), 2006
PMID: 16484188
The Staden package, 1998.
Staden R, Beal KF, Bonfield JK., Methods Mol. Biol. 132(), 2000
PMID: 10547834
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
A probabilistic method for identifying start codons in bacterial genomes.
Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL., Bioinformatics 17(12), 2001
PMID: 11751220
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
The COG database: an updated version includes eukaryotes.
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA., BMC Bioinformatics 4(), 2003
PMID: 12969510
The Gene Ontology (GO) database and informatics resource.
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium., Nucleic Acids Res. 32(Database issue), 2004
PMID: 14681407
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Biological activities and chemical composition of purified tracheal cytotoxin of Bordetella pertussis.
Cookson BT, Cho HL, Herwaldt LA, Goldman WE., Infect. Immun. 57(7), 1989
PMID: 2543636
Overrepresentation of a gene family encoding extracytoplasmic solute receptors in Bordetella.
Antoine R, Jacob-Dubuisson F, Drobecq H, Willery E, Lesjean S, Locht C., J. Bacteriol. 185(4), 2003
PMID: 12562821
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