CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks

Schneider, Jessica; Vorhölter, Frank-Jörg; Trost, Eva; Blom, Jochen; Musa, Y. R.; Neuweger, Heiko; Niehaus, Karsten; Schatschneider, Sarah; Tauch, Andreas; Goesmann, Alexander

CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks

Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)
Genetics and Molecular Research 9(3): 1660-1672.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.4238/vol9-3gmr901

Autor*in

Schneider, Jessica^UniBi; Vorhölter, Frank-Jörg^UniBi; Trost, Eva^UniBi ; Blom, Jochen^UniBi; Musa, Y. R.; Neuweger, Heiko^UniBi; Niehaus, Karsten^UniBi; Schatschneider, Sarah^UniBi; Tauch, Andreas^UniBi; Goesmann, Alexander^UniBi

Einrichtung

Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Arbeitsgruppe A. Tauch
Centrum für Biotechnologie > Arbeitsgruppe K. Niehaus
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Fakultät für Biologie > Proteom- und Metabolomforschung
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie

Stichworte

Genome annotation; Metabolic networks; Xanthomonas; Systems biology; Corynebacterium

Erscheinungsjahr

2010

Zeitschriftentitel

Genetics and Molecular Research

Band

9

Ausgabe

3

Seite(n)

1660-1672

ISSN

1676-5680

eISSN

1676-5680

Page URI

https://pub.uni-bielefeld.de/record/1929692

Zitieren

Schneider J, Vorhölter F-J, Trost E, et al. CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research. 2010;9(3):1660-1672.

Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., et al. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), 1660-1672. https://doi.org/10.4238/vol9-3gmr901

Schneider, Jessica, Vorhölter, Frank-Jörg, Trost, Eva, Blom, Jochen, Musa, Y. R., Neuweger, Heiko, Niehaus, Karsten, Schatschneider, Sarah, Tauch, Andreas, and Goesmann, Alexander. 2010. “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”. Genetics and Molecular Research 9 (3): 1660-1672.

Schneider, J., Vorhölter, F. - J., Trost, E., Blom, J., Musa, Y. R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A., and Goesmann, A. (2010). CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research 9, 1660-1672.

Schneider, J., et al., 2010. CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research, 9(3), p 1660-1672.

J. Schneider, et al., “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, vol. 9, 2010, pp. 1660-1672.

Schneider, J., Vorhölter, F.-J., Trost, E., Blom, J., Musa, Y.R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A., Goesmann, A.: CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research. 9, 1660-1672 (2010).

Schneider, Jessica, Vorhölter, Frank-Jörg, Trost, Eva, Blom, Jochen, Musa, Y. R., Neuweger, Heiko, Niehaus, Karsten, Schatschneider, Sarah, Tauch, Andreas, and Goesmann, Alexander. “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”. Genetics and Molecular Research 9.3 (2010): 1660-1672.

Daten bereitgestellt von European Bioinformatics Institute (EBI)

10 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Alkhateeb RS, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter FJ., J Biotechnol 253(), 2017
PMID: 28506932

Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris.
Schatschneider S, Schneider J, Blom J, Létisse F, Niehaus K, Goesmann A, Vorhölter FJ., Microbiology 163(8), 2017
PMID: 28795660

D-Xylose assimilation via the Weimberg pathway by solvent-tolerant Pseudomonas taiwanensis VLB120.
Köhler KA, Blank LM, Frick O, Schmid A., Environ Microbiol 17(1), 2015
PMID: 24934825

Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100.
Schatschneider S, Persicke M, Watt SA, Hublik G, Pühler A, Niehaus K, Vorhölter FJ., J Biotechnol 167(2), 2013
PMID: 23395674

Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.
Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A., J Bacteriol 194(12), 2012
PMID: 22505676

Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A., BMC Genomics 13(), 2012
PMID: 22524407

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.
Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM., Nat Rev Microbiol 9(5), 2011
PMID: 21478901

Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.
Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehoever P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, Schneider MP, Silva A, Santos CS, Santos LS, Sabbadini P, Dias AA, Hirata R, Mattos-Guaraldi AL, Tauch A., BMC Genomics 12(), 2011
PMID: 21801446

Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.
Schröder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
PMID: 22053731

The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
PMID: 21192786