Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity

Smits THM, Jaenicke S, Rezzonico F, Kamber T, Goesmann A, Frey JE, Duffy B (2010)
BMC Genomics 11(1): 2.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA
DOI
URN
urn:nbn:de:0070-pub-17966447
Autor*in
Smits, Theo H. M.; Jaenicke, SebastianUniBi; Rezzonico, Fabio; Kamber, Tim; Goesmann, AlexanderUniBi ; Frey, Jürg E; Duffy, Brion
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > Computational Genomics
Abstract / Bemerkung
Background: Erwinia pyrifoliae is a newly described necrotrophic pathogen, which causes fire blight on Asian (Nashi) pear and is geographically restricted to Eastern Asia. Relatively little is known about its genetics compared to the closely related main fire blight pathogen E. amylovora. Results: The genome of the type strain of E. pyrifoliae strain DSM 12163(T), was sequenced using both 454 and Solexa pyrosequencing and annotated. The genome contains a circular chromosome of 4.026 Mb and four small plasmids. Based on their respective role in virulence in E. amylovora or related organisms, we identified several putative virulence factors, including type III and type VI secretion systems and their effectors, flagellar genes, sorbitol metabolism, iron uptake determinants, and quorum-sensing components. A deletion in the rpoS gene covering the most conserved region of the protein was identified which may contribute to the difference in virulence/host-range compared to E. amylovora. Comparative genomics with the pome fruit epiphyte Erwinia tasmaniensis Et1/99 showed that both species are overall highly similar, although specific differences were identified, for example the presence of some phage gene-containing regions and a high number of putative genomic islands containing transposases in the E. pyrifoliae DSM 12163T genome. Conclusions: The E. pyrifoliae genome is an important addition to the published genome of E. tasmaniensis and the unfinished genome of E. amylovora providing a foundation for re-sequencing additional strains that may shed light on the evolution of the host-range and virulence/pathogenicity of this important group of plant-associated bacteria.
Erscheinungsjahr
2010
Zeitschriftentitel
BMC Genomics
Band
11
Ausgabe
1
Art.-Nr.
2
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/1796644

Zitieren

Smits THM, Jaenicke S, Rezzonico F, et al. Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics. 2010;11(1): 2.
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., & Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics, 11(1), 2. https://doi.org/10.1186/1471-2164-11-2
Smits, Theo H. M., Jaenicke, Sebastian, Rezzonico, Fabio, Kamber, Tim, Goesmann, Alexander, Frey, Jürg E, and Duffy, Brion. 2010. “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”. BMC Genomics 11 (1): 2.
Smits, T. H. M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J. E., and Duffy, B. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics 11:2.
Smits, T.H.M., et al., 2010. Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics, 11(1): 2.
T.H.M. Smits, et al., “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”, BMC Genomics, vol. 11, 2010, : 2.
Smits, T.H.M., Jaenicke, S., Rezzonico, F., Kamber, T., Goesmann, A., Frey, J.E., Duffy, B.: Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity. BMC Genomics. 11, : 2 (2010).
Smits, Theo H. M., Jaenicke, Sebastian, Rezzonico, Fabio, Kamber, Tim, Goesmann, Alexander, Frey, Jürg E, and Duffy, Brion. “Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity”. BMC Genomics 11.1 (2010): 2.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Name
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-09-06T08:49:04Z
MD5 Prüfsumme
821d64ecfb11fc4721e9f7913224cfda


29 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host.
Kamber T, Pothier JF, Pelludat C, Rezzonico F, Duffy B, Smits THM., BMC Genomics 18(1), 2017
PMID: 28818038
ClpXP-Dependent RpoS Degradation Enables Full Activation of Type III Secretion System, Amylovoran Production, and Motility in Erwinia amylovora.
Lee JH, Zhao Y., Phytopathology 107(11), 2017
PMID: 28691868
Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila.
Shapiro LR, Scully ED, Straub TJ, Park J, Stephenson AG, Beattie GA, Gleason ML, Kolter R, Coelho MC, De Moraes CM, Mescher MC, Zhaxybayeva O., Genome Biol Evol 8(3), 2016
PMID: 26992913
Recurrent evolution of gut symbiotic bacteria in pentatomid stinkbugs.
Hosokawa T, Matsuura Y, Kikuchi Y, Fukatsu T., Zoological Lett 2(), 2016
PMID: 27980805
Comparative genome sequencing to assess the genetic diversity and virulence attributes of 15 Vibrio anguillarum isolates.
Busschaert P, Frans I, Crauwels S, Zhu B, Willems K, Bossier P, Michiels C, Verstrepen K, Lievens B, Rediers H., J Fish Dis 38(9), 2015
PMID: 25073650
Genetic islands in pome fruit pathogenic and non-pathogenic Erwinia species and related plasmids.
Llop P., Front Microbiol 6(), 2015
PMID: 26379649
Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.
Tampakaki AP., Front Plant Sci 5(), 2014
PMID: 24723933
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.
Bühlmann A, Pothier JF, Rezzonico F, Smits TH, Andreou M, Boonham N, Duffy B, Frey JE., J Microbiol Methods 92(3), 2013
PMID: 23275135
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.
Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., PLoS One 8(2), 2013
PMID: 23409014
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics.
Smits TH, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B., Syst Appl Microbiol 36(7), 2013
PMID: 23726521
Comparative genome analysis of Enterobacter cloacae.
Liu WY, Wong CF, Chung KM, Jiang JW, Leung FC., PLoS One 8(9), 2013
PMID: 24069314
PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data.
Cosentino S, Voldby Larsen M, Møller Aarestrup F, Lund O., PLoS One 8(10), 2013
PMID: 24204795
Genomics and current genetic understanding of Erwinia amylovora and the fire blight antagonist Pantoea vagans
Kamber T, Smits THM, Rezzonico F, Duffy B., Trees (Berl West) 26(1), 2012
PMID: IND44798016
Real-time PCR, a method fit for detection and quantification of Erwinia amylovora
Dreo T, Pirc M, Ravnikar M., Trees (Berl West) 26(1), 2012
PMID: IND44798028
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.
Rezzonico F, Braun-Kiewnick A, Mann RA, Rodoni B, Goesmann A, Duffy B, Smits TH., Mol Plant Pathol 13(8), 2012
PMID: 22583486
Detection of AI-2 receptors in genomes of Enterobacteriaceae suggests a role of type-2 quorum sensing in closed ecosystems.
Rezzonico F, Smits TH, Duffy B., Sensors (Basel) 12(5), 2012
PMID: 22778662
Fire blight: applied genomic insights of the pathogen and host.
Malnoy M, Martens S, Norelli JL, Barny MA, Sundin GW, Smits TH, Duffy B., Annu Rev Phytopathol 50(), 2012
PMID: 22702352
Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis.
Cornman RS, Bennett AK, Murray KD, Evans JD, Elsik CG, Aronstein K., BMC Genomics 13(), 2012
PMID: 22747707
Genome sequence of Pectobacterium carotovorum subsp. carotovorum strain PCC21, a pathogen causing soft rot in Chinese cabbage.
Park TH, Choi BS, Choi AY, Choi IY, Heu S, Park BS., J Bacteriol 194(22), 2012
PMID: 23105077
Complete genome sequence of Japanese erwinia strain ejp617, a bacterial shoot blight pathogen of pear.
Park DH, Thapa SP, Choi BS, Kim WS, Hur JH, Cho JM, Lim JS, Choi IY, Lim CK., J Bacteriol 193(2), 2011
PMID: 21075933
Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to Rubus plants.
Powney R, Smits TH, Sawbridge T, Frey B, Blom J, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B., J Bacteriol 193(3), 2011
PMID: 21131493
Diversity, evolution, and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora.
Rezzonico F, Smits TH, Duffy B., Appl Environ Microbiol 77(11), 2011
PMID: 21460108
Gnom(Cmp): a quantitative approach for comparative analysis of closely related genomes of bacterial pathogens.
Yu G., Genome 54(5), 2011
PMID: 21539441
Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire blight antagonist Pantoea vagans C9-1.
Smits TH, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B., PLoS One 6(7), 2011
PMID: 21789243
Eop1 from a Rubus strain of Erwinia amylovora functions as a host-range limiting factor.
Asselin JE, Bonasera JM, Kim JF, Oh CS, Beer SV., Phytopathology 101(8), 2011
PMID: 21469934
Genomics of iron acquisition in the plant pathogen Erwinia amylovora: insights in the biosynthetic pathway of the siderophore desferrioxamine E.
Smits TH, Duffy B., Arch Microbiol 193(10), 2011
PMID: 21814817
Comparative Genomics of Erwinia amylovora and Related Erwinia Species-What do We Learn?
Zhao Y, Qi M., Genes (Basel) 2(3), 2011
PMID: 24710213
De novo assembly of short sequence reads.
Paszkiewicz K, Studholme DJ., Brief Bioinform 11(5), 2010
PMID: 20724458
Genome sequence of the biocontrol agent Pantoea vagans strain C9-1.
Smits TH, Rezzonico F, Kamber T, Goesmann A, Ishimaru CA, Stockwell VO, Frey JE, Duffy B., J Bacteriol 192(24), 2010
PMID: 20952567

82 References

Daten bereitgestellt von Europe PubMed Central.

Regulatory measures against Erwinia amylovora in Switzerland
AUTHOR UNKNOWN, 2005
Distribution and economic importance of fire blight
AUTHOR UNKNOWN, 2000
Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation of Erwinia amylovora strains with PFGE analysis.
Jock S, Donat V, Lopez MM, Bazzi C, Geider K., Environ. Microbiol. 4(2), 2002
PMID: 11972620
Epidemiology of fire blight
AUTHOR UNKNOWN, 2000
Management of fire blight: a case study in microbial ecology.
Johnson KB, Stockwell VO., Annu Rev Phytopathol 36(), 1998
PMID: 15012499
A polyphasic approach assigns the pathogenic Erwinia strains from diseased pear trees in Japan to Erwinia pyrifoliae.
Geider K, Auling G, Jakovljevic V, Volksch B., Lett. Appl. Microbiol. 48(3), 2009
PMID: 19187512
Erwinia pyrifoliae sp. nov., a novel pathogen that affects Asian pear trees (Pyrus pyrifolia Nakai)
Kim WS, Gardan L, Rhim SL, Geider K., Int. J. Syst. Bacteriol. 49 Pt 2(), 1999
PMID: 10319516
Relatedness of chromosomal and plasmid DNAs of Erwinia pyrifoliae and Erwinia amylovora.
McGhee GC, Schnabel EL, Maxson-Stein K, Jones B, Stromberg VK, Lacy GH, Jones AL., Appl. Environ. Microbiol. 68(12), 2002
PMID: 12450843
Molecular comparison of pathogenic bacteria from pear trees in Japan and the fire blight pathogen Erwinia amylovora.
Kim WS, Hildebrand M, Jock S, Geider K., Microbiology (Reading, Engl.) 147(Pt 11), 2001
PMID: 11700346
Duplex Real-Time Polymerase Chain Reaction Reveals Competition Between Erwinia amylovora and E. pyrifoliae on Pear Blossoms
Lehman SusanM, Kim Won-Sik, Castle AlanJ, Svircev AntonetM., Phytopathology 98(6), 2008
PMID: IND44094717
Erwinia amylovora: the molecular basis of fireblight disease.
Eastgate JA., Mol. Plant Pathol. 1(6), 2000
PMID: IND23247050
Molecular genetics of Erwinia amylovora involved in the development of fire blight.
Oh CS, Beer SV., FEMS Microbiol. Lett. 253(2), 2005
PMID: 16253442
Genetic differences between blight-causing Erwinia species with differing host specificities, identified by suppression subtractive hybridization.
Triplett LR, Zhao Y, Sundin GW., Appl. Environ. Microbiol. 72(11), 2006
PMID: 16963554
Diversity and detection of Korean Erwinia pyrifoliae strains as determined by plasmid profiling, phylogenetic analysis and PCR
AUTHOR UNKNOWN, Plant Pathol. 56(6), 2007
PMID: IND43977212
Identification of dspEF, hrpW and hrpN loci and characterization of the hrpNgene in Erwinia pyrifoliae
AUTHOR UNKNOWN, 2005
The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia.
Kube M, Migdoll AM, Muller I, Kuhl H, Beck A, Reinhardt R, Geider K., Environ. Microbiol. 10(9), 2008
PMID: 18462403
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Genetic analysis of a pathogenic Erwinia sp. isolated from pear in Japan.
Maxson-Stein K, McGhee GC, Smith JJ, Jones AL, Sundin GW., Phytopathology 93(11), 2003
PMID: IND43625294
Erwinia pyrifoliae, an Erwinia species different from Erwinia amylovora, causes a necrotic disease of Asian pear trees.
Rhim SL, Volksch B, Gardan L, Paulin JP, Langlotz C, Kim WS, Geider K., Plant Pathol. 48(4), 1999
PMID: IND22034559
Sequence analysis of an Erwinia stewartii plasmid, pSW100.
Fu JF, Chang HC, Chen YM, Chang YS, Liu ST., Plasmid 34(2), 1995
PMID: 8559805
The sigma 70 family: sequence conservation and evolutionary relationships.
Lonetto M, Gribskov M, Gross CA., J. Bacteriol. 174(12), 1992
PMID: 1597408
Identification and characterization of the Erwinia amylovora rpoS gene: RpoS is not involved in induction of fireblight disease symptoms.
Anderson M, Pollitt CE, Roberts IS, Eastgate JA., J. Bacteriol. 180(24), 1998
PMID: 9852034
Role of RpoS in virulence and stress tolerance of the plant pathogen Erwinia carotovora subsp. carotovora.
Andersson RA, Koiv V, Norman-Setterblad C, Pirhonen M., Microbiology (Reading, Engl.) 145 ( Pt 12)(), 1999
PMID: 10627052
RpoS (sigma-S) controls expression of rsmA, a global regulator of secondary metabolites, harpin, and extracellular proteins in Erwinia carotovora.
Mukherjee A, Cui Y, Ma W, Liu Y, Ishihama A, Eisenstark A, Chatterjee AK., J. Bacteriol. 180(14), 1998
PMID: 9658007
Type III protein secretion systems in bacterial pathogens of animals and plants.
Hueck CJ., Microbiol. Mol. Biol. Rev. 62(2), 1998
PMID: 9618447
Molecular basis of symbiosis between Rhizobium and legumes.
Freiberg C, Fellay R, Bairoch A, Broughton WJ, Rosenthal A, Perret X., Nature 387(6631), 1997
PMID: 9163424
Potential symbiosis-specific genes uncovered by sequencing a 410-kilobase DNA region of the Bradyrhizobium japonicum chromosome.
Gottfert M, Rothlisberger S, Kundig C, Beck C, Marty R, Hennecke H., J. Bacteriol. 183(4), 2001
PMID: 11157954
The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion.
Dale C, Young SA, Haydon DT, Welburn SC., Proc. Natl. Acad. Sci. U.S.A. 98(4), 2001
PMID: 11172045
Type III secretion system effector proteins: double agents in bacterial disease and plant defense.
Alfano JR, Collmer A., Annu Rev Phytopathol 42(), 2004
PMID: 15283671
Molecular characterization of natural Erwinia pyrifoliae strains deficient in hypersensitive response.
Jock S, Kim WS, Barny MA, Geider K., Appl. Environ. Microbiol. 69(1), 2003
PMID: 12514060
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.
McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, Holmes A, Grewal N, Mulvaney E, Ryan E, Sun H, Florea L, Miller W, Stoneking T, Nhan M, Waterston R, Wilson RK., Nature 413(6858), 2001
PMID: 11677609
The Hrp pathogenicity island of Erwinia amylovora and identification of three novel genes required for systemic infection.
Oh CS, Kim JF, Beer SV., Mol. Plant Pathol. 6(2), 2005
PMID: IND43691737
The hrp genes cluster in Erwinia pyrifoliae and determination of HR active domain in HrpNprotein
AUTHOR UNKNOWN, 2008
DspA/E, a type III effector essential for Erwinia amylovora pathogenicity and growth in planta, induces cell death in host apple and nonhost tobacco plants.
Boureau T, ElMaarouf-Bouteau H, Garnier A, Brisset MN, Perino C, Pucheu I, Barny MA., Mol. Plant Microbe Interact. 19(1), 2006
PMID: 16404949
The hrpK operon of Pseudomonas syringae pv. tomato DC3000 encodes two proteins secreted by the type III (Hrp) protein secretion system: HopB1 and HrpK, a putative type III translocator.
Petnicki-Ocwieja T, van Dijk K, Alfano JR., J. Bacteriol. 187(2), 2005
PMID: 15629936
Contributions of the genome sequence of Erwinia amylovora to the fire blight community
AUTHOR UNKNOWN, 2008
Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?
Boyer F, Fichant G, Berthod J, Vandenbrouck Y, Attree I., BMC Genomics 10(), 2009
PMID: 19284603
Type VI secretion: a beginner's guide.
Bingle LE, Bailey CM, Pallen MJ., Curr. Opin. Microbiol. 11(1), 2008
PMID: 18289922
Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system.
Pukatzki S, Ma AT, Sturtevant D, Krastins B, Sarracino D, Nelson WC, Heidelberg JF, Mekalanos JJ., Proc. Natl. Acad. Sci. U.S.A. 103(5), 2006
PMID: 16432199
Host-extract induced changes in the secretome of the plant pathogenic bacterium Pectobacterium atrosepticum.
Mattinen L, Nissinen R, Riipi T, Kalkkinen N, Pirhonen M., Proteomics 7(19), 2007
PMID: 17726675
Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum.
Liu H, Coulthurst SJ, Pritchard L, Hedley PE, Ravensdale M, Humphris S, Burr T, Takle G, Brurberg MB, Birch PR, Salmond GP, Toth IK., PLoS Pathog. 4(6), 2008
PMID: 18566662
A Rhizobium leguminosarum biovar trifolii locus not localized on the sym plasmid hinders effective nodulation on plants of the pea cross-inoculation group.
Roest HP, Mulders IH, Spaink HP, Wijffelman CA, Lugtenberg BJ., Mol. Plant Microbe Interact. 10(7), 1997
PMID: 9304865
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.
Bell KS, Sebaihia M, Pritchard L, Holden MT, Hyman LJ, Holeva MC, Thomson NR, Bentley SD, Churcher LJ, Mungall K, Atkin R, Bason N, Brooks K, Chillingworth T, Clark K, Doggett J, Fraser A, Hance Z, Hauser H, Jagels K, Moule S, Norbertczak H, Ormond D, Price C, Quail MA, Sanders M, Walker D, Whitehead S, Salmond GP, Birch PR, Parkhill J, Toth IK., Proc. Natl. Acad. Sci. U.S.A. 101(30), 2004
PMID: 15263089
Genetics of sorbitol metabolism in Erwinia amylovora and its influence on bacterial virulence.
Aldridge P, Metzger M, Geider K., Mol. Gen. Genet. 256(6), 1997
PMID: 9435786
Silencing leaf sorbitol synthesis alters long-distance partitioning and apple fruit quality.
Teo G, Suzuki Y, Uratsu SL, Lampinen B, Ormonde N, Hu WK, DeJong TM, Dandekar AM., Proc. Natl. Acad. Sci. U.S.A. 103(49), 2006
PMID: 17132742
Sorbitol has no role in fire blight as demonstrated using transgenic apple with constitutively altered content
AUTHOR UNKNOWN, 2008
Relationship between sorbitol and solute potential in apple shoots relative to fire blight symptom development after infection by Erwinia amylovora.
Suleman P, Steiner PW., Phytopathology 84(10), 1994
PMID: IND20450584
Genetics of biosynthesis and structure of the capsular exopolysaccharide from the Asian pear pathogen Erwinia pyrifoliae.
Kim WS, Schollmeyer M, Nimtz M, Wray V, Geider K., Microbiology (Reading, Engl.) 148(Pt 12), 2002
PMID: 12480905
Genetics and complementation of DNA regions involved in amylovoran synthesis of Erwinia amylovora and stewartan synthesis of Erwinia stewartii
AUTHOR UNKNOWN, 1996
Nucleotide sequence analysis of the Erwinia stewartii cps gene cluster for synthesis of stewartan and comparison to the Erwinia amylovora ams cluster for synthesis of amylovoran
AUTHOR UNKNOWN, 1996
Levan and levansucrase synthesized by the fireblight pathogen Erwinia amylovora.
Gross M, Geier G, Rudolph K, Geider K., Physiol. Mol. Plant Pathol. 40(6), 1992
PMID: IND93004673
Homoserine lactone-mediated gene regulation in plant-associated bacteria.
Pierson LS 3rd, Wood DW, Pierson EA., Annu Rev Phytopathol 36(), 1998
PMID: 15012498
Quorum sensing in bacteria.
Miller MB, Bassler BL., Annu. Rev. Microbiol. 55(), 2001
PMID: 11544353
Bacterial bioluminescence: its control and ecological significance.
Nealson KH, Hastings JW., Microbiol. Rev. 43(4), 1979
PMID: 396467
The evolutionary history of quorum-sensing systems in bacteria.
Lerat E, Moran NA., Mol. Biol. Evol. 21(5), 2004
PMID: 15014168
A factor that positively regulates cell division by activating transcription of the major cluster of essential cell division genes of Escherichia coli.
Wang XD, de Boer PA, Rothfield LI., EMBO J. 10(11), 1991
PMID: 1915297
SdiA of Salmonella enterica is a LuxR homolog that detects mixed microbial communities.
Michael B, Smith JN, Swift S, Heffron F, Ahmer BM., J. Bacteriol. 183(19), 2001
PMID: 11544237
Interference with AI-2-mediated bacterial cell-cell communication.
Xavier KB, Bassler BL., Nature 437(7059), 2005
PMID: 16193054
Bacterial esperanto.
Winans SC., Nat. Struct. Biol. 9(2), 2002
PMID: 11813009
LuxS and autoinducer-2: their contribution to quorum sensing and metabolism in bacteria.
Winzer K, Hardie KR, Williams P., Adv. Appl. Microbiol. 53(), 2003
PMID: 14696323
Lack of genomic evidence of AI-2 receptors suggests a non-quorum sensing role for luxS in most bacteria.
Rezzonico F, Duffy B., BMC Microbiol. 8(), 2008
PMID: 18803868
Quorum sensing: the many languages of bacteria.
Reading NC, Sperandio V., FEMS Microbiol. Lett. 254(1), 2006
PMID: 16451172
Lsr-mediated transport and processing of AI-2 in Salmonella typhimurium.
Taga ME, Miller ST, Bassler BL., Mol. Microbiol. 50(4), 2003
PMID: 14622426
The role of luxS in the fire blight pathogen Erwinia amylovora is limited to metabolism and does not involve quorum sensing.
Rezzonico F, Duffy B., Mol. Plant Microbe Interact. 20(10), 2007
PMID: 17918630
WITHHOLDING AND EXCHANGING IRON: Interactions Between Erwinia spp. and Their Plant Hosts.
Expert D., Annu Rev Phytopathol 37(), 1999
PMID: 11701826
Dual role of desferrioxamine in Erwinia amylovora pathogenicity.
Dellagi A, Brisset MN, Paulin JP, Expert D., Mol. Plant Microbe Interact. 11(8), 1998
PMID: 9675889
Desferrioxamine-dependent iron transport in Erwinia amylovora CFBP1430: cloning of the gene encoding the ferrioxamine receptor FoxR.
Kachadourian R, Dellagi A, Laurent J, Bricard L, Kunesch G, Expert D., Biometals 9(2), 1996
PMID: 8744897
Iron and fire blight role in pathogenicity of desferrioxamine E, the main siderophore of Erwinia amylovora
AUTHOR UNKNOWN, 2000
Proferrioxamine synthesis in Erwinia amylovora in response to precursor or hydroxylysine feeding: metabolic profiling with liquid chromatography-electrospray mass spectrometry.
Feistner GJ., Biometals 8(4), 1995
PMID: 7580052
Mauve: multiple alignment of conserved genomic sequence with rearrangements.
Darling AC, Mau B, Blattner FR, Perna NT., Genome Res. 14(7), 2004
PMID: 15231754
Description of Erwinia piriflorinigrans sp. nov., causal agent of pear blossom necrosis
AUTHOR UNKNOWN, 2008
Enterobacter pyrinus sp. nov., an organism associated with brown leaf spot disease of pear trees
AUTHOR UNKNOWN, 1993
Erwinia persicinus, a new species isolated from plants.
Hao MV, Brenner DJ, Steigerwalt AG, Kosako Y, Komagata K., Int. J. Syst. Bacteriol. 40(4), 1990
PMID: 2275853
Pink Erwinia amylovora colony discoloration in diagnostic isolations by co-cultured bacteria
AUTHOR UNKNOWN, 2008
Molecular differentiation of Erwinia amylovora strains from North America and of two Asian pear pathogens by analyses of PFGE patterns and hrpN genes.
Jock S, Geider K., Environ. Microbiol. 6(5), 2004
PMID: 15049921
Erwinia tasmaniensis sp. nov., a non-phytopathogenic bacterium from apple and pear trees.
Geider K, Auling G, Du Z, Jakovljevic V, Jock S, Volksch B., Int. J. Syst. Evol. Microbiol. 56(Pt 12), 2006
PMID: 17159002
Reclassification of non-pigmented Erwinia herbicola strains from trees as Erwinia billingiae sp. nov.
Mergaert J, Hauben L, Cnockaert MC, Swings J., Int. J. Syst. Bacteriol. 49 Pt 2(), 1999
PMID: 10319458
De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
Hernandez D, Francois P, Farinelli L, Osteras M, Schrenzel J., Genome Res. 18(5), 2008
PMID: 18332092
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
Microbial gene identification using interpolated Markov models.
Salzberg SL, Delcher AL, Kasif S, White O., Nucleic Acids Res. 26(2), 1998
PMID: 9421513
CRITICA: coding region identification tool invoking comparative analysis.
Badger JH, Olsen GJ, Woese CR., Mol. Biol. Evol. 16(4), 1999
PMID: 10331277
The KEGG databases at GenomeNet.
Kanehisa M, Goto S, Kawashima S, Nakaya A., Nucleic Acids Res. 30(1), 2002
PMID: 11752249
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 20047678
PubMed | Europe PMC

Suchen in

Google Scholar