Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide

Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, et al. (2009)
ENVIRONMENTAL MICROBIOLOGY 11(5): 1038-1055.

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DOI
Autor*in
Strittmatter, Axel W.; Liesegang, Heiko; Rabus, Ralf; Decker, Iwona; Amann, Judith; Andres, Soenke; Henne, Anke; Fricke, Wolfgang Florian; Martinez-Arias, Rosa; Bartels, Daniela; Goesmann, AlexanderUniBi ; Krause, Lutz
Alle
Einrichtung
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Abstract / Bemerkung
Sulfate-reducing bacteria (SRB) belonging to the metabolically versatile Desulfobacteriaceae are abundant in marine sediments and contribute to the global carbon cycle by complete oxidation of organic compounds. Desulfobacterium autotrophicum HRM2 is the first member of this ecophysiologically important group with a now available genome sequence. With 5.6 megabasepairs (Mbp) the genome of Db. autotrophicum HRM2 is about 2 Mbp larger than the sequenced genomes of other sulfate reducers (SRB). A high number of genome plasticity elements (> 100 transposon-related genes), several regions of GC discontinuity and a high number of repetitive elements (132 paralogous genes Mbp(-1)) point to a different genome evolution when comparing with Desulfovibrio spp. The metabolic versatility of Db. autotrophicum HRM2 is reflected in the presence of genes for the degradation of a variety of organic compounds including long-chain fatty acids and for the Wood-Ljungdahl pathway, which enables the organism to completely oxidize acetyl-CoA to CO2 but also to grow chemolithoautotrophically. The presence of more than 250 proteins of the sensory/regulatory protein families should enable Db. autotrophicum HRM2 to efficiently adapt to changing environmental conditions. Genes encoding periplasmic or cytoplasmic hydrogenases and formate dehydrogenases have been detected as well as genes for the transmembrane TpII-c(3), Hme and Rnf complexes. Genes for subunits A, B, C and D as well as for the proposed novel subunits L and F of the heterodisulfide reductases are present. This enzyme is involved in energy conservation in methanoarchaea and it is speculated that it exhibits a similar function in the process of dissimilatory sulfate reduction in Db. autotrophicum HRM2.
Erscheinungsjahr
2009
Zeitschriftentitel
ENVIRONMENTAL MICROBIOLOGY
Band
11
Ausgabe
5
Seite(n)
1038-1055
ISSN
1462-2912
eISSN
1462-2920
Page URI
https://pub.uni-bielefeld.de/record/1634097

Zitieren

Strittmatter AW, Liesegang H, Rabus R, et al. Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY. 2009;11(5):1038-1055.
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY, 11(5), 1038-1055. https://doi.org/10.1111/j.1462-2920.2008.01825.x
Strittmatter, Axel W., Liesegang, Heiko, Rabus, Ralf, Decker, Iwona, Amann, Judith, Andres, Soenke, Henne, Anke, et al. 2009. “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”. ENVIRONMENTAL MICROBIOLOGY 11 (5): 1038-1055.
Strittmatter, A. W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W. F., Martinez-Arias, R., Bartels, D., et al. (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY 11, 1038-1055.
Strittmatter, A.W., et al., 2009. Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY, 11(5), p 1038-1055.
A.W. Strittmatter, et al., “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”, ENVIRONMENTAL MICROBIOLOGY, vol. 11, 2009, pp. 1038-1055.
Strittmatter, A.W., Liesegang, H., Rabus, R., Decker, I., Amann, J., Andres, S., Henne, A., Fricke, W.F., Martinez-Arias, R., Bartels, D., Goesmann, A., Krause, L., Pühler, A., Klenk, H.-P., Richter, M., Schueler, M., Gloeckner, F.O., Meyerdierks, A., Gottschalk, G., Amann, R.: Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. ENVIRONMENTAL MICROBIOLOGY. 11, 1038-1055 (2009).
Strittmatter, Axel W., Liesegang, Heiko, Rabus, Ralf, Decker, Iwona, Amann, Judith, Andres, Soenke, Henne, Anke, Fricke, Wolfgang Florian, Martinez-Arias, Rosa, Bartels, Daniela, Goesmann, Alexander, Krause, Lutz, Pühler, Alfred, Klenk, Hans-Peter, Richter, Michael, Schueler, Margarete, Gloeckner, Frank Oliver, Meyerdierks, Anke, Gottschalk, Gerhard, and Amann, Rudolf. “Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide”. ENVIRONMENTAL MICROBIOLOGY 11.5 (2009): 1038-1055.

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