Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean
Margaret I, Becker A, Blom J, Bonilla I, Goesmann A, Göttfert M, Lloret J, Mittard-Runte V, Rückert C, Ruiz-Sainz J-E, Vinardell JM, et al. (2011)
Journal of Biotechnology 155(1): 11-19.
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Autor*in
Margaret, Isabel;
Becker, Anke;
Blom, JochenUniBi;
Bonilla, Ildefonso;
Goesmann, AlexanderUniBi ;
Göttfert, Michael;
Lloret, Javier;
Mittard-Runte, VirginieUniBi;
Rückert, ChristianUniBi ;
Ruiz-Sainz, José-Enrique;
Vinardell, José Maria;
Weidner, StefanUniBi
Einrichtung
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Technische Fakultät > AG Genominformatik
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Technische Fakultät > AG Genominformatik
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Institut für Bioinformatik
Abstract / Bemerkung
Glycine max (soybean) plants can be nodulated by fast-growing rhizobial strains of the genus Sinorhizobium as well as by slow-growing strains clustered in the genus Bradyrhizobium. Fast-growing rhizobia strains with different soybean cultivar specificities have been isolated from Chinese soils and from other geographical regions. Most of these strains have been clustered into the species Sinorhizobium fredii. The S. fredii strain HH103 was isolated from soils of Hubei province, Central China and was first described in 1985. This strain is capable to nodulate American and Asiatic soybean cultivars and many other different legumes and is so far the best studied fast-growing soybean-nodulating strain. Additionally to the chromosome S. fredii HH103 carries five indigenous plasmids. The largest plasmid (pSfrHH103e) harbours genes for the production of diverse surface polysaccharides, such as exopolysaccharides (EPS), lipopolysaccharides (LPS), and capsular polysaccharides (KPS). The second largest plasmid (pSfrHH103d) is a typical symbiotic plasmid (pSym), carrying nodulation and nitrogen fixation genes. The present mini review focuses on symbiotic properties of S. fredii HH103, in particular on nodulation and surface polysaccharides aspects. The model strain S. fredii HH103 was chosen for genomic sequencing, which is currently in progress. First analyses of the draft genome sequence revealed an extensive synteny between the chromosomes of S. fredii HH103 and Rhizobium sp. NGR234.
Erscheinungsjahr
2011
Zeitschriftentitel
Journal of Biotechnology
Band
155
Ausgabe
1
Seite(n)
11-19
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2036058
Zitieren
Margaret I, Becker A, Blom J, et al. Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology. 2011;155(1):11-19.
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), 11-19. https://doi.org/10.1016/j.jbiotec.2011.03.016
Margaret, Isabel, Becker, Anke, Blom, Jochen, Bonilla, Ildefonso, Goesmann, Alexander, Göttfert, Michael, Lloret, Javier, et al. 2011. “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”. Journal of Biotechnology 155 (1): 11-19.
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J. - E., et al. (2011). Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology 155, 11-19.
Margaret, I., et al., 2011. Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology, 155(1), p 11-19.
I. Margaret, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, vol. 155, 2011, pp. 11-19.
Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J.-E., Vinardell, J.M., Weidner, S.: Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology. 155, 11-19 (2011).
Margaret, Isabel, Becker, Anke, Blom, Jochen, Bonilla, Ildefonso, Goesmann, Alexander, Göttfert, Michael, Lloret, Javier, Mittard-Runte, Virginie, Rückert, Christian, Ruiz-Sainz, José-Enrique, Vinardell, José Maria, and Weidner, Stefan. “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”. Journal of Biotechnology 155.1 (2011): 11-19.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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