136 Publikationen

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[136]
2018 | Zeitschriftenaufsatz | PUB-ID: 2918205
Complete Genome Sequence of the Novel Cellulolytic, Anaerobic, Thermophilic Bacterium Herbivorax saccincola Type Strain GGR1, Isolated from a Lab Scale Biogas Reactor as Established by Illumina and Nanopore MinION Sequencing
Pechtl A, Rückert C, Maus I, Koeck DE, Trushina N, Kornberger P, Schwarz WH, Schlüter A, Liebl W, Zverlov VV (2018)
Genome Announcements 6(6): e01493-17.
PUB | DOI | WoS
 
[135]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920275 PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2018 | Zeitschriftenaufsatz | PUB-ID: 2916929
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Microbial Biotechnology 11(4): 667-679.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920169
Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats
Salto IP, Torres Tejerizo G, Wibberg D, Pühler A, Schlüter A, Pistorio M (2018)
Scientific Reports 8(1): 7783.
PUB | DOI | WoS | PubMed | Europe PMC
 
[132]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920170
Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
Hassa J, Maus I, Off S, Pühler A, Scherer P, Klocke M, Schlüter A (2018)
Applied Microbiology and Biotechnology 102(12): 5045-5063.
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920168 PUB | DOI
 
[130]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11: 167.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920173
Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11
Wibberg D, Salto IP, Eikmeyer FG, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2018)
Antimicrobial Agents and Chemotherapy 62(5): e00212-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2018 | Zeitschriftenaufsatz | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913556
Bioinformatics for NGS-based metagenomics and the application to biogas research
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
Journal of Biotechnology 261(SI): 10-23.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[126]
2017 | Zeitschriftenaufsatz | PUB-ID: 2912114
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[125]
2017 | Zeitschriftenaufsatz | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI
 
[124]
2017 | Zeitschriftenaufsatz | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[123]
2017 | Zeitschriftenaufsatz | PUB-ID: 2910369
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Microbiology and Biotechnology 27(2): 321-334.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[122]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916470
The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A (2017)
Journal of Biotechnology 257: 178-186.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911007
Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence
Ampattu BJ, Hagmann L, Liang C, Dittrich M, Schlüter A, Blom J, Krol E, Goesmann A, Becker A, Dandekar T, Mueller T, et al. (2017)
BMC Genomics 18: 282.
PUB | DOI | WoS | PubMed | Europe PMC
 
[120]
2017 | Zeitschriftenaufsatz | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
 
[119]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916406
Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors
Lasek R, Dziewit L, Ciok A, Decewicz P, Romaniuk K, Jedrys Z, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Journal of Biotechnology 263: 64-74.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916435
Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685
Czarnecki J, Dziewit L, Puzyna M, Prochwicz E, Tudek A, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Environmental Microbiology 19(11): 4536-4550.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916490
Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2017)
Archives of Microbiology 199(7): 1065-1068.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[115]
2016 | Zeitschriftenaufsatz | PUB-ID: 2920209
DNA and RNA Extraction and Quantitative Real-Time PCR-Based Assays for Biogas Biocenoses in an Interlaboratory Comparison
Lebuhn M, Derenkó J, Rademacher A, Helbig S, Munk B, Pechtl A, Stolze Y, Prowe S, Schwarz W, Schlüter A, Liebl W, et al. (2016)
Bioengineering 3(1): 7.
PUB | DOI
 
[114]
2016 | Zeitschriftenaufsatz | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904815
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Biotechnology for Biofuels 9: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[112]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904993
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI
 
[111]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904978
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI
 
[110]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904970
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI
 
[109]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904809
Efficiency and biotechnological aspects of biogas production from microalgal substrates
Klassen V, Blifernez-Klassen O, Wobbe L, Schlüter A, Kruse O, Mussgnug JH (2016)
Journal of Biotechnology 234: 7-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
[108]
2016 | Zeitschriftenaufsatz | PUB-ID: 2917144
Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes
Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C (2016)
BMC Genomics 17: 245.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2016 | Zeitschriftenaufsatz | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2016 | Zeitschriftenaufsatz | PUB-ID: 2908260
Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L)
Torres Tejerizo GA, Antonio Rogel M, Ormeno-Orrillo E, Julia Althabegoiti M, Fernanda Nilsson J, Niehaus K, Schlüter A, Pühler A, Florencia Del Papa M, Lagares A, Martinez-Romero E, et al. (2016)
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66: 4451-4457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2016 | Zeitschriftenaufsatz | PUB-ID: 2907633
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B (2016)
BMC Bioinformatics 17: 543.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[104]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904836
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schlüter A, Sczyrba A, Reichl U (2016)
Biotechnology for Biofuels 9(1): 155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2016 | Zeitschriftenaufsatz | PUB-ID: 2917142
Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670
Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A (2016)
Journal of Biotechnology 222: 11-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904691
Genomics of high molecular weight plasmids isolated from an on-farm biopurification system
Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillan-Barcia MP, de la Cruz F, Schlüter A, et al. (2016)
Scientific Reports 6: 28284.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903489
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Journal of Biotechnology 232: 50-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903302
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, et al. (2016)
Journal of Biotechnology 232: 61-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2016 | Zeitschriftenaufsatz | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[98]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905260
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
Biotechnology for Biofuels 9(1): 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[96]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
[95]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905629
Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor
Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Pühler A, Klocke M, Schlüter A (2016)
Journal of Biotechnology 232: 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2015 | Zeitschriftenaufsatz | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[92]
2015 | Zeitschriftenaufsatz | PUB-ID: 2901297
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
Plos One 10(12): e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[91]
2015 | Zeitschriftenaufsatz | PUB-ID: 2768627
Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer FG, Heinl S, Marx H, Pühler A, Grabherr R, Schlüter A (2015)
PLoS ONE 10(7): e0134149.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[90]
2015 | Zeitschriftenaufsatz | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[89]
2015 | Zeitschriftenaufsatz | PUB-ID: 2785064
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI
 
[88]
2015 | Zeitschriftenaufsatz | PUB-ID: 2722382
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze Y, Zakrzewski M, Maus I, Eikmeyer FG, Jaenicke S, Rottmann N, Siebner C, Pühler A, Schlüter A (2015)
Biotechnology for Biofuels 8: 14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[87]
2015 | Zeitschriftenaufsatz | PUB-ID: 2773134
Characterization of a collection of plasmid-containing bacteria isolated from an on-farm biopurification system used for pesticide removal
Martini MC, Albicoro FJ, Nour E, Schlüter A, van Elsas JD, Springael D, Smalla K, Pistorio M, Lagares A, Florencia Del Papa M (2015)
Plasmid 80(Special Issue S1): 16-23.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2015 | Zeitschriftenaufsatz | PUB-ID: 2762833
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Proteomics 15(20): 3585-3589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[85]
2015 | Zeitschriftenaufsatz | PUB-ID: 2733521
Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample
Stoeveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM (2015)
Journal of Biotechnology 201: 60-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2015 | Zeitschriftenaufsatz | PUB-ID: 2717648
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor
Hahnke S, Maus I, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2015)
Journal of Biotechnology 193: 34-36.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2015 | Zeitschriftenaufsatz | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2015 | Kurzbeitrag Konferenz | PUB-ID: 2901302
Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics
Verwaaijen B, Pühler A, Niehaus K, Schlüter A (2015)
Mycoses 58(Suppl. 3): 49-50.
PUB | WoS
 
[81]
2015 | Zeitschriftenaufsatz | PUB-ID: 2733509
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 201: 43-53.
PUB | DOI | WoS | PubMed | Europe PMC
 
[80]
2015 | Zeitschriftenaufsatz | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2015 | Kurzbeitrag Konferenz | PUB-ID: 2901466
A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants
Osterholz B, Wiebke P, Fust A, Rumming M, Schlüter A, Sczyrba A (2015)
Presented at the 3rd International Symposium on the environmental Dimension of Antibiotic Resistance, Wernigerode.
PUB
 
[78]
2015 | Zeitschriftenaufsatz | PUB-ID: 2778477
Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 852.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2015 | Zeitschriftenaufsatz | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI
 
[76]
2015 | Zeitschriftenaufsatz | PUB-ID: 2731076
Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals
Dziewit L, Pyzik A, Szuplewska M, Matlakowska R, Mielnicki S, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 152.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2014 | Zeitschriftenaufsatz | PUB-ID: 2678800
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing
Kröber M, Wibberg D, Grosch R, Eikmeyer FG, Verwaaijen B, Chowdhury SP, Hartmann A, Pühler A, Schlüter A (2014)
Frontiers in Microbiology 5: 252.
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2014 | Zeitschriftenaufsatz | PUB-ID: 2717549 PUB | DOI | WoS | PubMed | Europe PMC
 
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2014 | Zeitschriftenaufsatz | PUB-ID: 2669237
Cultivation-Independent Screening Revealed Hot Spots of IncP-1, IncP-7 and IncP-9 Plasmid Occurrence in Different Environmental Habitats
Dealtry S, Ding G-C, Weichelt V, Dunon V, Schlüter A, Carla Martini M, Florencia Del Papa M, Lagares A, Amos GCA, Wellington EMH, Gaze WH, et al. (2014)
PLoS ONE 9(2).
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2014 | Zeitschriftenaufsatz | PUB-ID: 2658490
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D (2014)
BMC Genomics 15(1): 124.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[70]
2014 | Zeitschriftenaufsatz | PUB-ID: 2694915
Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw
Hahnke S, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2014)
Journal of Biotechnology 184: 199-200.
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[69]
2014 | Zeitschriftenaufsatz | PUB-ID: 2693310
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)
Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)
Fungal Biology 118(9-10): 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
[68]
2014 | Zeitschriftenaufsatz | PUB-ID: 2694902
Bacterial communities in chitin-amended soil as revealed by 16S rRNA gene based pyrosequencing
Cretoiu MS, Kielak AM, Schlüter A, van Elsas JD (2014)
Soil Biology and Biochemistry 76: 5-11.
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[67]
2014 | Zeitschriftenaufsatz | PUB-ID: 2690688
Towards molecular biomarkers for biogas production from lignocellulose-rich substrates
Lebuhn M, Hanreich A, Klocke M, Schlüter A, Bauer C, Perez CM (2014)
Anaerobe 29: 10-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2014 | Zeitschriftenaufsatz | PUB-ID: 2685861
Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background
Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S (2014)
FEMS Microbiology Ecology 88(3): 565-578.
PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2014 | Zeitschriftenaufsatz | PUB-ID: 2675608
Genome sequence of the acid-tolerant strain Rhizobium sp LPU83
Wibberg D, Torres Tejerizo G, Florencia Del Papa M, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M (2014)
Journal of Biotechnology 176: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[64]
2014 | Zeitschriftenaufsatz | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
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[63]
2014 | Zeitschriftenaufsatz | PUB-ID: 2717558
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A (2014)
Journal of Biotechnology 192: 154-155.
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[62]
2014 | Zeitschriftenaufsatz | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
[61]
2014 | Zeitschriftenaufsatz | PUB-ID: 2676049
IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates
Schlüter A, Nordmann P, Bonnin RA, Millemann Y, Eikmeyer FG, Wibberg D, Pühler A, Poirel L (2014)
Antimicrobial Agents and Chemotherapy 58(7): 3768-3773.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2014 | Zeitschriftenaufsatz | PUB-ID: 2662055
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68.
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[59]
2013 | Zeitschriftenaufsatz | PUB-ID: 2605193
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M, Schlüter A (2013)
Biotechnology for Biofuels 6(1): 49.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[58]
2013 | Zeitschriftenaufsatz | PUB-ID: 2549908
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14
Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)
Journal of Biotechnology 167(2): 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[57]
2013 | Zeitschriftenaufsatz | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2013 | Zeitschriftenaufsatz | PUB-ID: 2645247
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A (2013)
Journal of Biotechnology 168(4): 734-736.
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[55]
2013 | Zeitschriftenaufsatz | PUB-ID: 2605230
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation
Hanreich A, Schimpf U, Zakrzewski M, Schlüter A, Benndorf D, Heyer R, Rapp E, Pühler A, Reichl U, Klocke M (2013)
Systematic and Applied Microbiology 36(5): 330-338.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2013 | Zeitschriftenaufsatz | PUB-ID: 2609868
Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges
Shah V, Zakrzewski M, Wibberg D, Eikmeyer FG, Schlüter A, Madamwar D (2013)
Microbial Ecology 66(3): 533-550.
PUB | DOI | WoS | PubMed | Europe PMC
 
[53]
2013 | Zeitschriftenaufsatz | PUB-ID: 2635526
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
Journal of Biotechnology 168(1): 62-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
[52]
2013 | Zeitschriftenaufsatz | PUB-ID: 2614207
Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging
Eikmeyer FG, Köfinger P, Poschenel A, Jünemann S, Zakrzewski M, Heinl S, Mayrhuber E, Grabherr R, Pühler A, Schwab H, Schlüter A (2013)
Journal of Biotechnology 167(3): 334-343.
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[51]
2013 | Zeitschriftenaufsatz | PUB-ID: 2557080
Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa
Bonnin RA, Poirel L, Nordmann P, Eikmeyer FG, Wibberg D, Pühler A, Schlüter A (2013)
Journal of Antimicrobial Chemotherapy 68(5): 1060-1065.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2013 | Zeitschriftenaufsatz | PUB-ID: 2548286
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
Environmental Microbiology 15(1): 253-270.
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2013 | Zeitschriftenaufsatz | PUB-ID: 2529202
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)
Journal of Biotechnology 167(2): 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2012 | Zeitschriftenaufsatz | PUB-ID: 2484618
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)
Journal of Biotechnology 158(4): 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2012 | Zeitschriftenaufsatz | PUB-ID: 2471858
Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2012)
PLoS ONE 7(1).
PUB | DOI | PubMed | Europe PMC
 
[45]
2012 | Zeitschriftenaufsatz | PUB-ID: 2472279
The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution
Eikmeyer FG, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CB, Top EM, Pühler A, Schlüter A (2012)
Plasmid 68(1): 13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[44]
2012 | Zeitschriftenaufsatz | PUB-ID: 2490535
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage
Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
Journal of Biotechnology 161(2): 153-166.
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2012 | Zeitschriftenaufsatz | PUB-ID: 2471681
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing
Rademacher A, Zakrzewski M, Schlüter A, Schonberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M (2012)
FEMS Microbiology Ecology 79(3): 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2012 | Zeitschriftenaufsatz | PUB-ID: 2474305
Carbapenem-Hydrolyzing GES-5-Encoding Gene on Different Plasmid Types Recovered from a Bacterial Community in a Sewage Treatment Plant
Girlich D, Poirel L, Szczepanowski R, Schlüter A, Nordmann P (2012)
Applied and Environmental Microbiology 78(4): 1292-1295.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2012 | Zeitschriftenaufsatz | PUB-ID: 2529610
Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198
Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)
Journal of Bacteriology 194(18): 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2012 | Zeitschriftenaufsatz | PUB-ID: 2530446
IncP-1 beta plasmids of Comamonas sp and Delftia sp strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet
Stolze Y, Eikmeyer FG, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, et al. (2012)
Microbiology 158(Pt_8): 2060-2072.
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2012 | Zeitschriftenaufsatz | PUB-ID: 2526298
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
Journal of Bacteriology 194(19): 5487-5488.
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2012 | Zeitschriftenaufsatz | PUB-ID: 2526933
Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties
Dohrmann AB, Küting M, Jünemann S, Jaenicke S, Schlüter A, Tebbe CC (2012)
The ISME journal 7(1): 37-49.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2354731
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
Journal of Biotechnology 155(1): 50-62.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2326465
First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group
Torres Tejerizo G, Florencia Del Papa M, Draghi W, Lozano M, de los Angeles Giusti M, Martini C, Eugenia Salas M, Salto I, Wibberg D, Szczepanowski R, Weidner S, et al. (2011)
Journal of Biotechnology 155(1): 3-10.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2411830
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2011)
PLoS ONE 6(10): e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2011 | Zeitschriftenaufsatz | PUB-ID: 2326518
Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
Szczepanowski R, Eikmeyer FG, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A (2011)
Journal of Biotechnology 155(1): 95-103.
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2011 | Sammelwerksbeitrag | PUB-ID: 2447751
Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods
Jaenicke S, Zakrzewski M, Jünemann S, Pühler A, Goesmann A, Schlüter A (2011)
In: Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. de Bruijn FJ (Ed); Wiley-Blackwell: 403-414.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2017892
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome
Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, et al. (In Press)
Journal of Biotechnology 155(1): 20-33.
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2011 | Zeitschriftenaufsatz | PUB-ID: 2003276
Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, et al. (2011)
PLoS ONE 6(1): e14519.
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2010 | Zeitschriftenaufsatz | PUB-ID: 1897327
Microalgae as substrates for fermentative biogas production in a combined biorefinery concept
Mussgnug JH, Klassen V, Schlüter A, Kruse O (2010)
Journal of Biotechnology 150(1): 51-56.
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2008 | Zeitschriftenaufsatz | PUB-ID: 1586009
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, et al. (2008)
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.
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2008 | Zeitschriftenaufsatz | PUB-ID: 1585956
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11
Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A (2008)
Journal of Biotechnology 136(1-2): 31-37.
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2008 | Zeitschriftenaufsatz | PUB-ID: 1585987
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, et al. (2008)
Journal of Biotechnology 136(1-2): 77-90.
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2007 | Zeitschriftenaufsatz | PUB-ID: 1593746 PUB | DOI | WoS | PubMed | Europe PMC
 
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2007 | Zeitschriftenaufsatz | PUB-ID: 1595014 PUB | DOI | WoS | PubMed | Europe PMC
 
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2007 | Zeitschriftenaufsatz | PUB-ID: 1946125
IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes
Schlüter A, Krahn I, Kollin F, Bonemann G, Stiens M, Szczepanowski R, Schneiker-Bekel S, Pühler A (2007)
Appl Environ Microbiol 73(20): 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
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2006 | Zeitschriftenaufsatz | PUB-ID: 1598081
Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant
Bönemann G, Stiens M, Pühler A, Schlüter A (2006)
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 50(9): 3075-3080.
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2006 | Zeitschriftenaufsatz | PUB-ID: 1599383
Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit
Stiens M, Schneiker-Bekel S, Keller M, Kuhn S, Pühler A, Schlüter A (2006)
Appl Environ Microbiol 72(5): 3662-3672.
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2005 | Zeitschriftenaufsatz | PUB-ID: 1604328 PUB | DOI | WoS | PubMed | Europe PMC
 
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2005 | Zeitschriftenaufsatz | PUB-ID: 1864013
Genomics of resistance plasmids isolated from wastewater treatment plants
Tennstedt T, Heuer H, Top EM, Szczepanowski R, Pühler A, Schlüter A (2005)
Plasmid 53(1): 40-41.
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2005 | Zeitschriftenaufsatz | PUB-ID: 1601676
TLA-2, a novel ambler class a expanded-spectrum beta-lactamase
Girlich D, Poirel L, Schlüter A, Nordmann P (2005)
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 49(11): 4767-4770.
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2004 | Zeitschriftenaufsatz | PUB-ID: 1605648
The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1 beta group without any accessory genes
Heuer H, Szczepanowski R, Schneiker-Bekel S, Pühler A, Top EM, Schlüter A (2004)
Microbiology 150(11): 3591-3599.
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2001 | Zeitschriftenaufsatz | PUB-ID: 2092250
Characterisation of Phaseolus symbionts isolated from Mediterranean soils and analysis of genetic factors related to pH tolerance
Priefer UB, Aurag J, Boesten B, Bouhmouch I, Defez R, Filali-Maltouf A, Miklis M, Moawad H, Mouhsine B, Prell J, Schlüter A, et al. (2001)
J Biotechnol 91(2-3): 223-236.
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1998 | Zeitschriftenaufsatz | PUB-ID: 1864096
Signal molecules and regulatory components in the Rhizobium-legume symbiosis.
Priefer UB, Patschkowski T, Schlüter A (1998)
Endocytobiosis and Cell Research 12(3): 201-202.
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1997 | Zeitschriftenaufsatz | PUB-ID: 1864089
Functional and regulatory analysis of the two copies of the fixNOQP operon of Rhizobium leguminosarum strain VF39
Schlüter A, Patschkowski T, Quandt J, Selinger LB, Weidner S, Krämer M, Zhou L, Hynes MF, Priefer UB (1997)
Mol Plant Microbe Interact 10(5): 605-616.
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1996 | Zeitschriftenaufsatz | PUB-ID: 2092354
Rhizobium leguminosarum bv. viciae contains a second fnr/fixK-like gene and an unusual fixL homologue
Patschkowski T, Schlüter A, Priefer UB (1996)
Mol Microbiol 21(2): 267-280.
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1992 | Konferenzbeitrag | PUB-ID: 1647768
Developmental and metabolic regulation of nitrogen-fixation gene expression in Rhizobium meliloti
de Philip P, BOISTARD P, Schlüter A, Patschkowski T, PRIEFER UB, OGARA F, BOESTEN B, NOONAN B, Pühler A (1992)
CANADIAN JOURNAL OF MICROBIOLOGY 38(6): 467-474.
PUB | DOI | WoS
 
[2]
1990 | Zeitschriftenaufsatz | PUB-ID: 1668756
An Fnr-like protein encoded in Rhizobium leguminosarum biovar viciae shows structural and functional homology to Rhizobium meliloti FixK.
Colonna-Romano S, Arnold W, Schlüter A, Boistard P, Pühler A, Priefer UB (1990)
Mol Gen Genet 223(1): 138-147.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
1989 | Zeitschriftenaufsatz | PUB-ID: 1653087
The Rhizobium meliloti fdxN gene encoding a ferredoxin-like protein is necessary for nitrogen fixation and is cotranscribed with nifA and nifB
Klipp W, Reilander H, Schlüter A, Krey R, Pühler A (1989)
MOLECULAR & GENERAL GENETICS 216(2-3): 293-302.
PUB | DOI | WoS | PubMed | Europe PMC
 

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[136]
2018 | Zeitschriftenaufsatz | PUB-ID: 2918205
Complete Genome Sequence of the Novel Cellulolytic, Anaerobic, Thermophilic Bacterium Herbivorax saccincola Type Strain GGR1, Isolated from a Lab Scale Biogas Reactor as Established by Illumina and Nanopore MinION Sequencing
Pechtl A, Rückert C, Maus I, Koeck DE, Trushina N, Kornberger P, Schwarz WH, Schlüter A, Liebl W, Zverlov VV (2018)
Genome Announcements 6(6): e01493-17.
PUB | DOI | WoS
 
[135]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920275 PUB | DOI | WoS | PubMed | Europe PMC
 
[134]
2018 | Zeitschriftenaufsatz | PUB-ID: 2916929
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Microbial Biotechnology 11(4): 667-679.
PUB | DOI | WoS | PubMed | Europe PMC
 
[133]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920169
Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats
Salto IP, Torres Tejerizo G, Wibberg D, Pühler A, Schlüter A, Pistorio M (2018)
Scientific Reports 8(1): 7783.
PUB | DOI | WoS | PubMed | Europe PMC
 
[132]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920170
Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
Hassa J, Maus I, Off S, Pühler A, Scherer P, Klocke M, Schlüter A (2018)
Applied Microbiology and Biotechnology 102(12): 5045-5063.
PUB | DOI | WoS | PubMed | Europe PMC
 
[131]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920168 PUB | DOI
 
[130]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11: 167.
PUB | DOI | WoS | PubMed | Europe PMC
 
[129]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920173
Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11
Wibberg D, Salto IP, Eikmeyer FG, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2018)
Antimicrobial Agents and Chemotherapy 62(5): e00212-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[128]
2018 | Zeitschriftenaufsatz | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[127]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913556
Bioinformatics for NGS-based metagenomics and the application to biogas research
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
Journal of Biotechnology 261(SI): 10-23.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[126]
2017 | Zeitschriftenaufsatz | PUB-ID: 2912114
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[125]
2017 | Zeitschriftenaufsatz | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI
 
[124]
2017 | Zeitschriftenaufsatz | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[123]
2017 | Zeitschriftenaufsatz | PUB-ID: 2910369
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Microbiology and Biotechnology 27(2): 321-334.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[122]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916470
The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A (2017)
Journal of Biotechnology 257: 178-186.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911007
Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence
Ampattu BJ, Hagmann L, Liang C, Dittrich M, Schlüter A, Blom J, Krol E, Goesmann A, Becker A, Dandekar T, Mueller T, et al. (2017)
BMC Genomics 18: 282.
PUB | DOI | WoS | PubMed | Europe PMC
 
[120]
2017 | Zeitschriftenaufsatz | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
 
[119]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916406
Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors
Lasek R, Dziewit L, Ciok A, Decewicz P, Romaniuk K, Jedrys Z, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Journal of Biotechnology 263: 64-74.
PUB | DOI | WoS | PubMed | Europe PMC
 
[118]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916435
Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685
Czarnecki J, Dziewit L, Puzyna M, Prochwicz E, Tudek A, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Environmental Microbiology 19(11): 4536-4550.
PUB | DOI | WoS | PubMed | Europe PMC
 
[117]
2017 | Zeitschriftenaufsatz | PUB-ID: 2916490
Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2017)
Archives of Microbiology 199(7): 1065-1068.
PUB | DOI | WoS | PubMed | Europe PMC
 
[116]
2017 | Zeitschriftenaufsatz | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[115]
2016 | Zeitschriftenaufsatz | PUB-ID: 2920209
DNA and RNA Extraction and Quantitative Real-Time PCR-Based Assays for Biogas Biocenoses in an Interlaboratory Comparison
Lebuhn M, Derenkó J, Rademacher A, Helbig S, Munk B, Pechtl A, Stolze Y, Prowe S, Schwarz W, Schlüter A, Liebl W, et al. (2016)
Bioengineering 3(1): 7.
PUB | DOI
 
[114]
2016 | Zeitschriftenaufsatz | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
[113]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904815
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Biotechnology for Biofuels 9: 156.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[112]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904993
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI
 
[111]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904978
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI
 
[110]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904970
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI
 
[109]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904809
Efficiency and biotechnological aspects of biogas production from microalgal substrates
Klassen V, Blifernez-Klassen O, Wobbe L, Schlüter A, Kruse O, Mussgnug JH (2016)
Journal of Biotechnology 234: 7-26.
PUB | DOI | WoS | PubMed | Europe PMC
 
[108]
2016 | Zeitschriftenaufsatz | PUB-ID: 2917144
Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes
Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C (2016)
BMC Genomics 17: 245.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2016 | Zeitschriftenaufsatz | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
[106]
2016 | Zeitschriftenaufsatz | PUB-ID: 2908260
Rhizobium favelukesii sp nov., isolated from the root nodules of alfalfa (Medicago sativa L)
Torres Tejerizo GA, Antonio Rogel M, Ormeno-Orrillo E, Julia Althabegoiti M, Fernanda Nilsson J, Niehaus K, Schlüter A, Pühler A, Florencia Del Papa M, Lagares A, Martinez-Romero E, et al. (2016)
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 66: 4451-4457.
PUB | DOI | WoS | PubMed | Europe PMC
 
[105]
2016 | Zeitschriftenaufsatz | PUB-ID: 2907633
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B (2016)
BMC Bioinformatics 17: 543.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[104]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904836
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schlüter A, Sczyrba A, Reichl U (2016)
Biotechnology for Biofuels 9(1): 155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[103]
2016 | Zeitschriftenaufsatz | PUB-ID: 2917142
Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670
Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A (2016)
Journal of Biotechnology 222: 11-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
[102]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904691
Genomics of high molecular weight plasmids isolated from an on-farm biopurification system
Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillan-Barcia MP, de la Cruz F, Schlüter A, et al. (2016)
Scientific Reports 6: 28284.
PUB | DOI | WoS | PubMed | Europe PMC
 
[101]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903489
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Journal of Biotechnology 232: 50-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[100]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903302
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, et al. (2016)
Journal of Biotechnology 232: 61-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[99]
2016 | Zeitschriftenaufsatz | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[98]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
[97]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905260
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
Biotechnology for Biofuels 9(1): 171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[96]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
[95]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905629
Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor
Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Pühler A, Klocke M, Schlüter A (2016)
Journal of Biotechnology 232: 38-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
[94]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB | DOI | WoS | PubMed | Europe PMC
 
[93]
2015 | Zeitschriftenaufsatz | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[92]
2015 | Zeitschriftenaufsatz | PUB-ID: 2901297
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
Plos One 10(12): e0144769.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[91]
2015 | Zeitschriftenaufsatz | PUB-ID: 2768627
Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer FG, Heinl S, Marx H, Pühler A, Grabherr R, Schlüter A (2015)
PLoS ONE 10(7): e0134149.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[90]
2015 | Zeitschriftenaufsatz | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[89]
2015 | Zeitschriftenaufsatz | PUB-ID: 2785064
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI
 
[88]
2015 | Zeitschriftenaufsatz | PUB-ID: 2722382
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze Y, Zakrzewski M, Maus I, Eikmeyer FG, Jaenicke S, Rottmann N, Siebner C, Pühler A, Schlüter A (2015)
Biotechnology for Biofuels 8: 14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[87]
2015 | Zeitschriftenaufsatz | PUB-ID: 2773134
Characterization of a collection of plasmid-containing bacteria isolated from an on-farm biopurification system used for pesticide removal
Martini MC, Albicoro FJ, Nour E, Schlüter A, van Elsas JD, Springael D, Smalla K, Pistorio M, Lagares A, Florencia Del Papa M (2015)
Plasmid 80(Special Issue S1): 16-23.
PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2015 | Zeitschriftenaufsatz | PUB-ID: 2762833
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Proteomics 15(20): 3585-3589.
PUB | DOI | WoS | PubMed | Europe PMC
 
[85]
2015 | Zeitschriftenaufsatz | PUB-ID: 2733521
Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample
Stoeveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM (2015)
Journal of Biotechnology 201: 60-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[84]
2015 | Zeitschriftenaufsatz | PUB-ID: 2717648
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor
Hahnke S, Maus I, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2015)
Journal of Biotechnology 193: 34-36.
PUB | DOI | WoS | PubMed | Europe PMC
 
[83]
2015 | Zeitschriftenaufsatz | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[82]
2015 | Kurzbeitrag Konferenz | PUB-ID: 2901302
Analysis of the pathogenic interaction of R. solani On L. sativa by means of transcriptomics
Verwaaijen B, Pühler A, Niehaus K, Schlüter A (2015)
Mycoses 58(Suppl. 3): 49-50.
PUB | WoS
 
[81]
2015 | Zeitschriftenaufsatz | PUB-ID: 2733509
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 201: 43-53.
PUB | DOI | WoS | PubMed | Europe PMC
 
[80]
2015 | Zeitschriftenaufsatz | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[79]
2015 | Kurzbeitrag Konferenz | PUB-ID: 2901466
A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants
Osterholz B, Wiebke P, Fust A, Rumming M, Schlüter A, Sczyrba A (2015)
Presented at the 3rd International Symposium on the environmental Dimension of Antibiotic Resistance, Wernigerode.
PUB
 
[78]
2015 | Zeitschriftenaufsatz | PUB-ID: 2778477
Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 852.
PUB | DOI | WoS | PubMed | Europe PMC
 
[77]
2015 | Zeitschriftenaufsatz | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI
 
[76]
2015 | Zeitschriftenaufsatz | PUB-ID: 2731076
Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals
Dziewit L, Pyzik A, Szuplewska M, Matlakowska R, Mielnicki S, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 152.
PUB | DOI | WoS | PubMed | Europe PMC
 
[75]
2015 | Zeitschriftenaufsatz | PUB-ID: 2731292 PUB | DOI | WoS | PubMed | Europe PMC
 
[74]
2014 | Zeitschriftenaufsatz | PUB-ID: 2678800
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing
Kröber M, Wibberg D, Grosch R, Eikmeyer FG, Verwaaijen B, Chowdhury SP, Hartmann A, Pühler A, Schlüter A (2014)
Frontiers in Microbiology 5: 252.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[73]
2014 | Zeitschriftenaufsatz | PUB-ID: 2717549 PUB | DOI | WoS | PubMed | Europe PMC
 
[72]
2014 | Zeitschriftenaufsatz | PUB-ID: 2669237
Cultivation-Independent Screening Revealed Hot Spots of IncP-1, IncP-7 and IncP-9 Plasmid Occurrence in Different Environmental Habitats
Dealtry S, Ding G-C, Weichelt V, Dunon V, Schlüter A, Carla Martini M, Florencia Del Papa M, Lagares A, Amos GCA, Wellington EMH, Gaze WH, et al. (2014)
PLoS ONE 9(2).
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2014 | Zeitschriftenaufsatz | PUB-ID: 2658490
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D (2014)
BMC Genomics 15(1): 124.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[70]
2014 | Zeitschriftenaufsatz | PUB-ID: 2694915
Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw
Hahnke S, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2014)
Journal of Biotechnology 184: 199-200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2014 | Zeitschriftenaufsatz | PUB-ID: 2693310
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)
Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)
Fungal Biology 118(9-10): 800-813.
PUB | DOI | WoS | PubMed | Europe PMC
 
[68]
2014 | Zeitschriftenaufsatz | PUB-ID: 2694902
Bacterial communities in chitin-amended soil as revealed by 16S rRNA gene based pyrosequencing
Cretoiu MS, Kielak AM, Schlüter A, van Elsas JD (2014)
Soil Biology and Biochemistry 76: 5-11.
PUB | DOI | WoS
 
[67]
2014 | Zeitschriftenaufsatz | PUB-ID: 2690688
Towards molecular biomarkers for biogas production from lignocellulose-rich substrates
Lebuhn M, Hanreich A, Klocke M, Schlüter A, Bauer C, Perez CM (2014)
Anaerobe 29: 10-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2014 | Zeitschriftenaufsatz | PUB-ID: 2685861
Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background
Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S (2014)
FEMS Microbiology Ecology 88(3): 565-578.
PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2014 | Zeitschriftenaufsatz | PUB-ID: 2675608
Genome sequence of the acid-tolerant strain Rhizobium sp LPU83
Wibberg D, Torres Tejerizo G, Florencia Del Papa M, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M (2014)
Journal of Biotechnology 176: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[64]
2014 | Zeitschriftenaufsatz | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2014 | Zeitschriftenaufsatz | PUB-ID: 2717558
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A (2014)
Journal of Biotechnology 192: 154-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[62]
2014 | Zeitschriftenaufsatz | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
[61]
2014 | Zeitschriftenaufsatz | PUB-ID: 2676049
IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates
Schlüter A, Nordmann P, Bonnin RA, Millemann Y, Eikmeyer FG, Wibberg D, Pühler A, Poirel L (2014)
Antimicrobial Agents and Chemotherapy 58(7): 3768-3773.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2014 | Zeitschriftenaufsatz | PUB-ID: 2662055
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68.
PUB | DOI | WoS | PubMed | Europe PMC
 
[59]
2013 | Zeitschriftenaufsatz | PUB-ID: 2605193
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M, Schlüter A (2013)
Biotechnology for Biofuels 6(1): 49.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[58]
2013 | Zeitschriftenaufsatz | PUB-ID: 2549908
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14
Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)
Journal of Biotechnology 167(2): 142-155.
PUB | DOI | WoS | PubMed | Europe PMC
 
[57]
2013 | Zeitschriftenaufsatz | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2013 | Zeitschriftenaufsatz | PUB-ID: 2645247
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A (2013)
Journal of Biotechnology 168(4): 734-736.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2013 | Zeitschriftenaufsatz | PUB-ID: 2605230
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation
Hanreich A, Schimpf U, Zakrzewski M, Schlüter A, Benndorf D, Heyer R, Rapp E, Pühler A, Reichl U, Klocke M (2013)
Systematic and Applied Microbiology 36(5): 330-338.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2013 | Zeitschriftenaufsatz | PUB-ID: 2609868
Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges
Shah V, Zakrzewski M, Wibberg D, Eikmeyer FG, Schlüter A, Madamwar D (2013)
Microbial Ecology 66(3): 533-550.
PUB | DOI | WoS | PubMed | Europe PMC
 
[53]
2013 | Zeitschriftenaufsatz | PUB-ID: 2635526
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
Journal of Biotechnology 168(1): 62-63.
PUB | DOI | WoS | PubMed | Europe PMC
 
[52]
2013 | Zeitschriftenaufsatz | PUB-ID: 2614207
Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass silaging
Eikmeyer FG, Köfinger P, Poschenel A, Jünemann S, Zakrzewski M, Heinl S, Mayrhuber E, Grabherr R, Pühler A, Schwab H, Schlüter A (2013)
Journal of Biotechnology 167(3): 334-343.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2013 | Zeitschriftenaufsatz | PUB-ID: 2557080
Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa
Bonnin RA, Poirel L, Nordmann P, Eikmeyer FG, Wibberg D, Pühler A, Schlüter A (2013)
Journal of Antimicrobial Chemotherapy 68(5): 1060-1065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2013 | Zeitschriftenaufsatz | PUB-ID: 2548286
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
Environmental Microbiology 15(1): 253-270.
PUB | DOI | WoS | PubMed | Europe PMC
 
 
[48]
2013 | Zeitschriftenaufsatz | PUB-ID: 2529202
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)
Journal of Biotechnology 167(2): 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2012 | Zeitschriftenaufsatz | PUB-ID: 2484618
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
Zakrzewski M, Goesmann A, Jaenicke S, Jünemann S, Eikmeyer FG, Szczepanowski R, Al-Soud WA, Sørensen S, Pühler A, Schlüter A (2012)
Journal of Biotechnology 158(4): 248-258.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2012 | Zeitschriftenaufsatz | PUB-ID: 2471858
Correction: bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2012)
PLoS ONE 7(1).
PUB | DOI | PubMed | Europe PMC
 
[45]
2012 | Zeitschriftenaufsatz | PUB-ID: 2472279
The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution
Eikmeyer FG, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CB, Top EM, Pühler A, Schlüter A (2012)
Plasmid 68(1): 13-24.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[44]
2012 | Zeitschriftenaufsatz | PUB-ID: 2490535
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage
Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
Journal of Biotechnology 161(2): 153-166.
PUB | DOI | WoS | PubMed | Europe PMC
 
[43]
2012 | Zeitschriftenaufsatz | PUB-ID: 2471681
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing
Rademacher A, Zakrzewski M, Schlüter A, Schonberg M, Szczepanowski R, Goesmann A, Pühler A, Klocke M (2012)
FEMS Microbiology Ecology 79(3): 785-799.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2012 | Zeitschriftenaufsatz | PUB-ID: 2474305
Carbapenem-Hydrolyzing GES-5-Encoding Gene on Different Plasmid Types Recovered from a Bacterial Community in a Sewage Treatment Plant
Girlich D, Poirel L, Szczepanowski R, Schlüter A, Nordmann P (2012)
Applied and Environmental Microbiology 78(4): 1292-1295.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2012 | Zeitschriftenaufsatz | PUB-ID: 2529610
Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198
Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)
Journal of Bacteriology 194(18): 5144-5145.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2012 | Zeitschriftenaufsatz | PUB-ID: 2530446
IncP-1 beta plasmids of Comamonas sp and Delftia sp strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet
Stolze Y, Eikmeyer FG, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, et al. (2012)
Microbiology 158(Pt_8): 2060-2072.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2012 | Zeitschriftenaufsatz | PUB-ID: 2526298
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
Journal of Bacteriology 194(19): 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2012 | Zeitschriftenaufsatz | PUB-ID: 2526933
Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties
Dohrmann AB, Küting M, Jünemann S, Jaenicke S, Schlüter A, Tebbe CC (2012)
The ISME journal 7(1): 37-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2011 | Zeitschriftenaufsatz | PUB-ID: 2354731
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
Journal of Biotechnology 155(1): 50-62.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2011 | Zeitschriftenaufsatz | PUB-ID: 2326465
First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group
Torres Tejerizo G, Florencia Del Papa M, Draghi W, Lozano M, de los Angeles Giusti M, Martini C, Eugenia Salas M, Salto I, Wibberg D, Szczepanowski R, Weidner S, et al. (2011)
Journal of Biotechnology 155(1): 3-10.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2011 | Zeitschriftenaufsatz | PUB-ID: 2411830
Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes
Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2011)
PLoS ONE 6(10): e25724.
PUB | DOI | WoS | PubMed | Europe PMC
 
[34]
2011 | Zeitschriftenaufsatz | PUB-ID: 2326518
Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
Szczepanowski R, Eikmeyer FG, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A (2011)
Journal of Biotechnology 155(1): 95-103.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2011 | Sammelwerksbeitrag | PUB-ID: 2447751
Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods
Jaenicke S, Zakrzewski M, Jünemann S, Pühler A, Goesmann A, Schlüter A (2011)
In: Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. de Bruijn FJ (Ed); Wiley-Blackwell: 403-414.
PUB | DOI
 
[32]
2011 | Zeitschriftenaufsatz | PUB-ID: 2017892
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome
Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, et al. (In Press)
Journal of Biotechnology 155(1): 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
[31]
2011 | Zeitschriftenaufsatz | PUB-ID: 2003276
Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, et al. (2011)
PLoS ONE 6(1): e14519.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2010 | Zeitschriftenaufsatz | PUB-ID: 1897327
Microalgae as substrates for fermentative biogas production in a combined biorefinery concept
Mussgnug JH, Klassen V, Schlüter A, Kruse O (2010)
Journal of Biotechnology 150(1): 51-56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2008 | Zeitschriftenaufsatz | PUB-ID: 1586009
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, et al. (2008)
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2008 | Zeitschriftenaufsatz | PUB-ID: 1585956
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11
Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A (2008)
Journal of Biotechnology 136(1-2): 31-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2008 | Zeitschriftenaufsatz | PUB-ID: 1585987
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, et al. (2008)
Journal of Biotechnology 136(1-2): 77-90.
PUB | DOI | WoS | PubMed | Europe PMC
 
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2008 | Zeitschriftenaufsatz | PUB-ID: 1631126 PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2007 | Zeitschriftenaufsatz | PUB-ID: 1593538 PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2007 | Zeitschriftenaufsatz | PUB-ID: 1593746 PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2007 | Zeitschriftenaufsatz | PUB-ID: 1595014 PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2007 | Zeitschriftenaufsatz | PUB-ID: 1946125
IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes
Schlüter A, Krahn I, Kollin F, Bonemann G, Stiens M, Szczepanowski R, Schneiker-Bekel S, Pühler A (2007)
Appl Environ Microbiol 73(20): 6345-6350.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[21]
2006 | Zeitschriftenaufsatz | PUB-ID: 1598081
Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant
Bönemann G, Stiens M, Pühler A, Schlüter A (2006)
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 50(9): 3075-3080.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2006 | Zeitschriftenaufsatz | PUB-ID: 1599383
Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experimerit
Stiens M, Schneiker-Bekel S, Keller M, Kuhn S, Pühler A, Schlüter A (2006)
Appl Environ Microbiol 72(5): 3662-3672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2005 | Zeitschriftenaufsatz | PUB-ID: 1604328 PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2005 | Zeitschriftenaufsatz | PUB-ID: 1864013
Genomics of resistance plasmids isolated from wastewater treatment plants
Tennstedt T, Heuer H, Top EM, Szczepanowski R, Pühler A, Schlüter A (2005)
Plasmid 53(1): 40-41.
PUB
 
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2005 | Zeitschriftenaufsatz | PUB-ID: 1602311 PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2005 | Zeitschriftenaufsatz | PUB-ID: 1603956 PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2005 | Zeitschriftenaufsatz | PUB-ID: 1601676
TLA-2, a novel ambler class a expanded-spectrum beta-lactamase
Girlich D, Poirel L, Schlüter A, Nordmann P (2005)
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 49(11): 4767-4770.
PUB | DOI | WoS | PubMed | Europe PMC
 
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[13]
2004 | Zeitschriftenaufsatz | PUB-ID: 1605648
The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1 beta group without any accessory genes
Heuer H, Szczepanowski R, Schneiker-Bekel S, Pühler A, Top EM, Schlüter A (2004)
Microbiology 150(11): 3591-3599.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2004 | Zeitschriftenaufsatz | PUB-ID: 1605701 PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2003 | Zeitschriftenaufsatz | PUB-ID: 1609647 PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
 
[9]
2001 | Zeitschriftenaufsatz | PUB-ID: 2092250
Characterisation of Phaseolus symbionts isolated from Mediterranean soils and analysis of genetic factors related to pH tolerance
Priefer UB, Aurag J, Boesten B, Bouhmouch I, Defez R, Filali-Maltouf A, Miklis M, Moawad H, Mouhsine B, Prell J, Schlüter A, et al. (2001)
J Biotechnol 91(2-3): 223-236.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2000 | Zeitschriftenaufsatz | PUB-ID: 2092286 PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
1998 | Zeitschriftenaufsatz | PUB-ID: 1864096
Signal molecules and regulatory components in the Rhizobium-legume symbiosis.
Priefer UB, Patschkowski T, Schlüter A (1998)
Endocytobiosis and Cell Research 12(3): 201-202.
PUB
 
[6]
1997 | Zeitschriftenaufsatz | PUB-ID: 1864089
Functional and regulatory analysis of the two copies of the fixNOQP operon of Rhizobium leguminosarum strain VF39
Schlüter A, Patschkowski T, Quandt J, Selinger LB, Weidner S, Krämer M, Zhou L, Hynes MF, Priefer UB (1997)
Mol Plant Microbe Interact 10(5): 605-616.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[5]
1996 | Zeitschriftenaufsatz | PUB-ID: 2092354
Rhizobium leguminosarum bv. viciae contains a second fnr/fixK-like gene and an unusual fixL homologue
Patschkowski T, Schlüter A, Priefer UB (1996)
Mol Microbiol 21(2): 267-280.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
[4]
1995 | Zeitschriftenaufsatz | PUB-ID: 1641096 PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
1992 | Konferenzbeitrag | PUB-ID: 1647768
Developmental and metabolic regulation of nitrogen-fixation gene expression in Rhizobium meliloti
de Philip P, BOISTARD P, Schlüter A, Patschkowski T, PRIEFER UB, OGARA F, BOESTEN B, NOONAN B, Pühler A (1992)
CANADIAN JOURNAL OF MICROBIOLOGY 38(6): 467-474.
PUB | DOI | WoS
 
[2]
1990 | Zeitschriftenaufsatz | PUB-ID: 1668756
An Fnr-like protein encoded in Rhizobium leguminosarum biovar viciae shows structural and functional homology to Rhizobium meliloti FixK.
Colonna-Romano S, Arnold W, Schlüter A, Boistard P, Pühler A, Priefer UB (1990)
Mol Gen Genet 223(1): 138-147.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
1989 | Zeitschriftenaufsatz | PUB-ID: 1653087
The Rhizobium meliloti fdxN gene encoding a ferredoxin-like protein is necessary for nitrogen fixation and is cotranscribed with nifA and nifB
Klipp W, Reilander H, Schlüter A, Krey R, Pühler A (1989)
MOLECULAR & GENERAL GENETICS 216(2-3): 293-302.
PUB | DOI | WoS | PubMed | Europe PMC
 

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