PUB - Publikationen an der Universität Bielefeld

The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool.
Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S., PLoS ONE 5(4), 2010
PMID: 20383326

The genomics of Acinetobacter baumannii: insights into genome plasticity, antimicrobial resistance and pathogenicity.
Imperi F, Antunes LC, Blom J, Villa L, Iacono M, Visca P, Carattoli A., IUBMB Life 63(12), 2011
PMID: 22034231

GES-11-producing Acinetobacter baumannii clinical isolates from Tunisian hospitals: Long-term dissemination of GES-type carbapenemases in North Africa.
Chihi H, Bonnin RA, Bourouis A, Mahrouki S, Besbes S, Moussa MB, Belhadj O, Naas T., J Glob Antimicrob Resist 5(), 2016
PMID: 27436466

Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii.
Gallagher LA, Ramage E, Weiss EJ, Radey M, Hayden HS, Held KG, Huse HK, Zurawski DV, Brittnacher MJ, Manoil C., J. Bacteriol. 197(12), 2015
PMID: 25845845

Antibiotic resistance acquired through a DNA damage-inducible response in Acinetobacter baumannii.
Norton MD, Spilkia AJ, Godoy VG., J. Bacteriol. 195(6), 2013
PMID: 23316046

Genetic organization of an Acinetobacter baumannii chromosomal region harbouring genes related to siderophore biosynthesis and transport.
Dorsey CW, Tolmasky ME, Crosa JH, Actis LA., Microbiology (Reading, Engl.) 149(Pt 5), 2003
PMID: 12724384

Comparative Genomics of Two ST 195 Carbapenem-Resistant Acinetobacter baumannii with Different Susceptibility to Polymyxin Revealed Underlying Resistance Mechanism.
Lean SS, Yeo CC, Suhaili Z, Thong KL., Front Microbiol 6(), 2015
PMID: 26779129

Characterization and PCR-based replicon typing of resistance plasmids in Acinetobacter baumannii.
Bertini A, Poirel L, Mugnier PD, Villa L, Nordmann P, Carattoli A., Antimicrob. Agents Chemother. 54(10), 2010
PMID: 20660691

GES extended-spectrum β-lactamases in Acinetobacter baumannii isolates in Belgium.
Bogaerts P, Naas T, El Garch F, Cuzon G, Deplano A, Delaire T, Huang TD, Lissoir B, Nordmann P, Glupczynski Y., Antimicrob. Agents Chemother. 54(11), 2010
PMID: 20805394

r2cat: synteny plots and comparative assembly.
Husemann P, Stoye J., Bioinformatics 26(4), 2009
PMID: 20015948

Mobilization of a Tn402-like class 1 integron with a novel cassette array via flanking miniature inverted-repeat transposable element-like structures.
Gillings MR, Labbate M, Sajjad A, Giguere NJ, Holley MP, Stokes HW., Appl. Environ. Microbiol. 75(18), 2009
PMID: 19648375

Bacterial peptidoglycan-associated lipoprotein is released into the bloodstream in gram-negative sepsis and causes inflammation and death in mice.
Hellman J, Roberts JD Jr, Tehan MM, Allaire JE, Warren HS., J. Biol. Chem. 277(16), 2002
PMID: 11830585

Intraspecies Transfer of the Chromosomal Acinetobacter baumannii blaNDM-1 Carbapenemase Gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Puhler A, Poirel L, Schluter A., Antimicrob. Agents Chemother. 60(5), 2016
PMID: 26953198

GES-type and OXA-23 carbapenemase-producing Acinetobacter baumannii in Turkey.
Zeka AN, Poirel L, Sipahi OR, Bonnin RA, Arda B, Ozinel M, Ulusoy S, Bor C, Nordmann P., J. Antimicrob. Chemother. 69(4), 2013
PMID: 24257315

Prokka: rapid prokaryotic genome annotation.
Seemann T., Bioinformatics 30(14), 2014
PMID: 24642063

Variation in the OC locus of Acinetobacter baumannii genomes predicts extensive structural diversity in the lipooligosaccharide.
Kenyon JJ, Nigro SJ, Hall RM., PLoS ONE 9(9), 2014
PMID: 25247305

Peptidoglycan-associated lipoprotein (Pal) of Gram-negative bacteria: function, structure, role in pathogenesis and potential application in immunoprophylaxis.
Godlewska R, Wisniewska K, Pietras Z, Jagusztyn-Krynicka EK., FEMS Microbiol. Lett. 298(1), 2009
PMID: 19519769

PHASTER: a better, faster version of the PHAST phage search tool.
Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS., Nucleic Acids Res. 44(W1), 2016
PMID: 27141966

A conjugative plasmid carrying the carbapenem resistance gene blaOXA-23 in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate.
Hamidian M, Kenyon JJ, Holt KE, Pickard D, Hall RM., J. Antimicrob. Chemother. 69(10), 2014
PMID: 24907141

Snapshot on carbapenemase-producing Pseudomonas aeruginosa and Acinetobacter baumannii in Bucharest hospitals reveals unusual clones and novel genetic surroundings for blaOXA-23.
Gheorghe I, Novais A, Grosso F, Rodrigues C, Chifiriuc MC, Lazar V, Peixe L., J. Antimicrob. Chemother. 70(4), 2015
PMID: 25630639

The role of ISAba1 in expression of OXA carbapenemase genes in Acinetobacter baumannii.
Turton JF, Ward ME, Woodford N, Kaufmann ME, Pike R, Livermore DM, Pitt TL., FEMS Microbiol. Lett. 258(1), 2006
PMID: 16630258

Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 Isolates.
Wibberg D, Rupp O, Blom J, Jelonek L, Krober M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Puhler A, Schluter A., PLoS ONE 10(12), 2015
PMID: 26690577

Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Puhler A, Schluter A., J. Biotechnol. 155(1), 2011
PMID: 21329740

GES-11, a novel integron-associated GES variant in Acinetobacter baumannii.
Moubareck C, Bremont S, Conroy MC, Courvalin P, Lambert T., Antimicrob. Agents Chemother. 53(8), 2009
PMID: 19451292

Acinetobacter baumannii: evolution of a global pathogen.
Antunes LC, Visca P, Towner KJ., Pathog Dis 71(3), 2014
PMID: 24376225

Organisation and evolution of the tol-pal gene cluster.
Sturgis JN., J. Mol. Microbiol. Biotechnol. 3(1), 2001
PMID: 11200223

Spread of the blaOXA-23-Containing Tn2008 in Carbapenem-Resistant Acinetobacter baumannii Isolates Grouped in CC92 from China.
Chen Y, Gao J, Zhang H, Ying C., Front Microbiol 8(), 2017
PMID: 28220115

Integrons: past, present, and future.
Gillings MR., Microbiol. Mol. Biol. Rev. 78(2), 2014
PMID: 24847022

The complete genome and phenome of a community-acquired Acinetobacter baumannii.
Farrugia DN, Elbourne LD, Hassan KA, Eijkelkamp BA, Tetu SG, Brown MH, Shah BS, Peleg AY, Mabbutt BC, Paulsen IT., PLoS ONE 8(3), 2013
PMID: 23527001

The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant's on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates.
Wibberg D, Szczepanowski R, Eikmeyer F, Puhler A, Schluter A., Plasmid 69(2), 2012
PMID: 23212116

Integrons: Vehicles and pathways for horizontal dissemination in bacteria.
Domingues S, da Silva GJ, Nielsen KM., Mob Genet Elements 2(5), 2012
PMID: 23550063

Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli.
Kieser T., Plasmid 12(1), 1984
PMID: 6387733

Evidence of Interruption of the comM Gene in a Large Series of Clinical Isolates of Multidrug-Resistant Acinetobacter baumannii.
Douraghi M, Jasemi S, Kodori M, Rahbar M, Boroumand MA., J. Mol. Microbiol. Biotechnol. 26(6), 2016
PMID: 27631080

The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution.
Eikmeyer F, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CJ, Top EM, Puhler A, Schluter A., Plasmid 68(1), 2012
PMID: 22326849

Evaluation of clonality and carbapenem resistance mechanisms among Acinetobacter baumannii-Acinetobacter calcoaceticus complex and Enterobacteriaceae isolates collected in European and Mediterranean countries and detection of two novel β-lactamases, GES-22 and VIM-35.
Castanheira M, Costello SE, Woosley LN, Deshpande LM, Davies TA, Jones RN., Antimicrob. Agents Chemother. 58(12), 2014
PMID: 25267671

Complete genome analysis of three Acinetobacter baumannii clinical isolates in China for insight into the diversification of drug resistance elements.
Zhu L, Yan Z, Zhang Z, Zhou Q, Zhou J, Wakeland EK, Fang X, Xuan Z, Shen D, Li QZ., PLoS ONE 8(6), 2013
PMID: 23826102

Investigation of a possible outbreak of carbapenem-resistant Acinetobacter baumannii in Odense, Denmark using PFGE, MLST and whole-genome-based SNPs.
Hammerum AM, Hansen F, Skov MN, Stegger M, Andersen PS, Holm A, Jakobsen L, Justesen US., J. Antimicrob. Chemother. 70(7), 2015
PMID: 25795772

Genome sequence of a dominant, multidrug-resistant Acinetobacter baumannii strain, TCDC-AB0715.
Chen CC, Lin YC, Sheng WH, Chen YC, Chang SC, Hsia KC, Liao MH, Li SY., J. Bacteriol. 193(9), 2011
PMID: 21398540

GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369

Structure of the K6 capsular polysaccharide from Acinetobacter baumannii isolate RBH4.
Kenyon JJ, Marzaioli AM, Hall RM, De Castro C., Carbohydr. Res. 409(), 2015
PMID: 25917131

Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.
Heinl S, Wibberg D, Eikmeyer F, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Puhler A, Schluter A., J. Biotechnol. 161(2), 2012
PMID: 22465289

A GC1 Acinetobacter baumannii isolate carrying AbaR3 and the aminoglycoside resistance transposon TnaphA6 in a conjugative plasmid.
Hamidian M, Holt KE, Pickard D, Dougan G, Hall RM., J. Antimicrob. Chemother. 69(4), 2013
PMID: 24235096

Evolution of AbaR-type genomic resistance islands in multiply antibiotic-resistant Acinetobacter baumannii.
Post V, White PA, Hall RM., J. Antimicrob. Chemother. 65(6), 2010
PMID: 20375036

Distribution of intrinsic plasmid replicase genes and their association with carbapenem-hydrolyzing class D beta-lactamase genes in European clinical isolates of Acinetobacter baumannii.
Towner KJ, Evans B, Villa L, Levi K, Hamouda A, Amyes SG, Carattoli A., Antimicrob. Agents Chemother. 55(5), 2011
PMID: 21300832

Complete Genome Sequence of Acinetobacter baumannii CIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses.
Krahn T, Wibberg D, Maus I, Winkler A, Puhler A, Poirel L, Schluter A., Genome Announc 3(4), 2015
PMID: 26227605

EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J, Kreis J, Spanig S, Juhre T, Bertelli C, Ernst C, Goesmann A., Nucleic Acids Res. 44(W1), 2016
PMID: 27098043

Ordering the bestiary of genetic elements transmissible by conjugation.
Garcillan-Barcia MP, de la Cruz F., Mob Genet Elements 3(1), 2013
PMID: 23734300

Genome organization of epidemic Acinetobacter baumannii strains.
Di Nocera PP, Rocco F, Giannouli M, Triassi M, Zarrilli R., BMC Microbiol. 11(), 2011
PMID: 21985032

WebMGA: a customizable web server for fast metagenomic sequence analysis.
Wu S, Zhu Z, Fu L, Niu B, Li W., BMC Genomics 12(), 2011
PMID: 21899761

The MACPF/CDC family of pore-forming toxins.
Rosado CJ, Kondos S, Bull TE, Kuiper MJ, Law RH, Buckle AM, Voskoboinik I, Bird PI, Trapani JA, Whisstock JC, Dunstone MA., Cell. Microbiol. 10(9), 2008
PMID: 18564372

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.
Bertelli C, Laird MR, Williams KP; Simon Fraser University Research Computing Group, Lau BY, Hoad G, Winsor GL, Brinkman FSL., Nucleic Acids Res. 45(W1), 2017
PMID: 28472413

ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes.
Gupta SK, Padmanabhan BR, Diene SM, Lopez-Rojas R, Kempf M, Landraud L, Rolain JM., Antimicrob. Agents Chemother. 58(1), 2013
PMID: 24145532

Identical miniature inverted repeat transposable elements flank class 1 integrons in clinical isolates of Acinetobacter spp.
Domingues S, Toleman MA, Nielsen KM, da Silva GJ., J. Clin. Microbiol. 51(7), 2013
PMID: 23596242

The diversity of conjugative relaxases and its application in plasmid classification.
Garcillan-Barcia MP, Francia MV, de la Cruz F., FEMS Microbiol. Rev. 33(3), 2009
PMID: 19396961

The transferability of blaOXA-23 gene in multidrug-resistant Acinetobacter baumannii isolates from Saudi Arabia and Egypt.
Lopes BS, Al-Agamy MH, Ismail MA, Shibl AM, Al-Qahtani AA, Al-Ahdal MN, Forbes KJ., Int. J. Med. Microbiol. 305(6), 2015
PMID: 26253451

Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii.
Adams MD, Goglin K, Molyneaux N, Hujer KM, Lavender H, Jamison JJ, MacDonald IJ, Martin KM, Russo T, Campagnari AA, Hujer AM, Bonomo RA, Gill SR., J. Bacteriol. 190(24), 2008
PMID: 18931120

Multidrug-resistant Acinetobacter baumannii strains carrying the bla(OxA-23) and the bla(GES-11) genes in a neonatology center in Tunisia.
Charfi-Kessis K, Mansour W, Ben Haj Khalifa A, Mastouri M, Nordmann P, Aouni M, Poirel L., Microb. Pathog. 74(), 2014
PMID: 25057763

VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on.
Chen L, Zheng D, Liu B, Yang J, Jin Q., Nucleic Acids Res. 44(D1), 2015
PMID: 26578559

Variation in the complex carbohydrate biosynthesis loci of Acinetobacter baumannii genomes.
Kenyon JJ, Hall RM., PLoS ONE 8(4), 2013
PMID: 23614028

Functional analysis of insertion sequence ISAba1, responsible for genomic plasticity of Acinetobacter baumannii.
Mugnier PD, Poirel L, Nordmann P., J. Bacteriol. 191(7), 2009
PMID: 19136598

The emergence of a novel sequence type of MDR Acinetobacter baumannii from the intensive care unit of an Egyptian tertiary care hospital.
Ghaith DM, Zafer MM, Al-Agamy MH, Alyamani EJ, Booq RY, Almoazzamy O., Ann. Clin. Microbiol. Antimicrob. 16(1), 2017
PMID: 28486994

Genomic insights that advance the species definition for prokaryotes.
Konstantinidis KT, Tiedje JM., Proc. Natl. Acad. Sci. U.S.A. 102(7), 2005
PMID: 15701695

Distribution of the blaOXA-23-containing transposons Tn2006 and Tn2008 in Australian carbapenem-resistant Acinetobacter baumannii isolates.
Nigro S, Hall RM., J. Antimicrob. Chemother. 70(8), 2015
PMID: 25881617

Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii.
Snitkin ES, Zelazny AM, Montero CI, Stock F, Mijares L; NISC Comparative Sequence Program, Murray PR, Segre JA, Mullikin J, Blakesley R, Young A, Chu G, Ramsahoye C, Lovett S, Han J, Legaspi R, Sison C, Gregory M, Montemayor C, Gestole M, Hargrove A, Johnson T, Myrick J, Riebow N, Schmidt B, Novotny B, Gupta J, Benjamin B, Brooks S, Coleman H, Ho SL, Schandler K, Smith L, Stantripop M, Maduro Q, Bouffard G, Dekhtyar M, Guan X, Masiello C, Maskeri B, McDowell J, Park M, Thomas P, Mullikin J, Blakesley R, Young A, Thomas J, Chu G, Ramsahoye C, Lovett S, Han J, Legaspi R, Sison C, Montemayor C, Gregory M, Hargrove A, Johnson T, Myrick J, Riebow N, Schmidt B, Novotny B, Gupta J, Benjamin B, Brooks S, Coleman H, Ho SL, Schandler K, Smith L, Stantripop M, Maduro Q, Bouffard G, Dekhtyar M, Guan X, Masiello C, Maskeri B, McDowell J, Park M, Vemulapalli M., Proc. Natl. Acad. Sci. U.S.A. 108(33), 2011
PMID: 21825119

Molecular epidemiology of carbapenem-resistant Acinetobacter baumannii isolates in the Gulf Cooperation Council States: dominance of OXA-23-type producers.
Zowawi HM, Sartor AL, Sidjabat HE, Balkhy HH, Walsh TR, Al Johani SM, AlJindan RY, Alfaresi M, Ibrahim E, Al-Jardani A, Al Salman J, Dashti AA, Johani K, Paterson DL., J. Clin. Microbiol. 53(3), 2015
PMID: 25568439

GES-14-Producing Acinetobacter baumannii Isolates in a Neonatal Intensive Care Unit in Tunisia Are Associated with a Typical Middle East Clone and a Transferable Plasmid.
Mabrouk A, Grosso F, Botelho J, Achour W, Ben Hassen A, Peixe L., Antimicrob. Agents Chemother. 61(6), 2017
PMID: 28348158

Acinetobacter baumannii: epidemiology, antimicrobial resistance, and treatment options.
Maragakis LL, Perl TM., Clin. Infect. Dis. 46(8), 2008
PMID: 18444865

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species.
Treangen TJ, Messeguer X., BMC Bioinformatics 7(), 2006
PMID: 17022809