Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA 1.67 MB
Autor*in
Maus, IrenaUniBi; Bremges, AndreasUniBi ; Stolze, YvonneUniBi; Hahnke, Sarah; Cibis, Katharina G.; Koeck, Daniela E.; Kim, Yong S.; Kreubel, Jana; Hassa, JuliaUniBi ; Wibberg, DanielUniBi; Weimann, Aaron; Off, Sandra
Alle
Abstract / Bemerkung
Background To elucidate biogas microbial communities and processes, the application of high-throughput DNA analysis approaches is becoming increasingly important. Unfortunately, generated data can only partialy be interpreted rudimentary since databases lack reference sequences. Results Novel cellulolytic, hydrolytic, and acidogenic/acetogenic Bacteria as well as methanogenic Archaea originating from different anaerobic digestion communities were analyzed on the genomic level to assess their role in biomass decomposition and biogas production. Some of the analyzed bacterial strains were recently described as new species and even genera, namely Herbinix hemicellulosilytica T3/55T, Herbinix luporum SD1DT, Clostridium bornimense M2/40T, Proteiniphilum saccharofermentans M3/6T, Fermentimonas caenicola ING2-E5BT, and Petrimonas mucosa ING2-E5AT. High-throughput genome sequencing of 22 anaerobic digestion isolates enabled functional genome interpretation, metabolic reconstruction, and prediction of microbial traits regarding their abilities to utilize complex bio-polymers and to perform specific fermentation pathways. To determine the prevalence of the isolates included in this study in different biogas systems, corresponding metagenome fragment mappings were done. Methanoculleus bourgensis was found to be abundant in three mesophilic biogas plants studied and slightly less abundant in a thermophilic biogas plant, whereas Defluviitoga tunisiensis was only prominent in the thermophilic system. Moreover, several of the analyzed species were clearly detectable in the mesophilic biogas plants, but appeared to be only moderately abundant. Among the species for which genome sequence information was publicly available prior to this study, only the species Amphibacillus xylanus, Clostridium clariflavum, and Lactobacillus acidophilus are of importance for the biogas microbiomes analyzed, but did not reach the level of abundance as determined for M. bourgensis and D. tunisiensis. Conclusions Isolation of key anaerobic digestion microorganisms and their functional interpretation was achieved by application of elaborated cultivation techniques and subsequent genome analyses. New isolates and their genome information extend the repository covering anaerobic digestion community members.
Stichworte
Anaerobic digestion Biomethanation Genome sequencing Fragment recruitment Defluviitoga tunisiensis Methanoculleus bourgensis
Erscheinungsjahr
2017
Zeitschriftentitel
Biotechnology for Biofuels
Band
10
Ausgabe
1
Art.-Nr.
264
ISSN
1754-6834
Finanzierungs-Informationen
Open-Access-Publikationskosten wurden durch die Deutsche Forschungsgemeinschaft und die Universität Bielefeld gefördert.
Page URI
https://pub.uni-bielefeld.de/record/2915516

Zitieren

Maus I, Bremges A, Stolze Y, et al. Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels. 2017;10(1): 264.
Maus, I., Bremges, A., Stolze, Y., Hahnke, S., Cibis, K. G., Koeck, D. E., Kim, Y. S., et al. (2017). Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels, 10(1), 264. doi:10.1186/s13068-017-0947-1
Maus, Irena, Bremges, Andreas, Stolze, Yvonne, Hahnke, Sarah, Cibis, Katharina G., Koeck, Daniela E., Kim, Yong S., et al. 2017. “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”. Biotechnology for Biofuels 10 (1): 264.
Maus, I., Bremges, A., Stolze, Y., Hahnke, S., Cibis, K. G., Koeck, D. E., Kim, Y. S., Kreubel, J., Hassa, J., Wibberg, D., et al. (2017). Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels 10:264.
Maus, I., et al., 2017. Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels, 10(1): 264.
I. Maus, et al., “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”, Biotechnology for Biofuels, vol. 10, 2017, : 264.
Maus, I., Bremges, A., Stolze, Y., Hahnke, S., Cibis, K.G., Koeck, D.E., Kim, Y.S., Kreubel, J., Hassa, J., Wibberg, D., Weimann, A., Off, S., Stantscheff, R., Zverlov, V.V., Schwarz, W.H., König, H., Liebl, W., Scherer, P., McHardy, A.C., Sczyrba, A., Klocke, M., Pühler, A., Schlüter, A.: Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels. 10, : 264 (2017).
Maus, Irena, Bremges, Andreas, Stolze, Yvonne, Hahnke, Sarah, Cibis, Katharina G., Koeck, Daniela E., Kim, Yong S., Kreubel, Jana, Hassa, Julia, Wibberg, Daniel, Weimann, Aaron, Off, Sandra, Stantscheff, Robbin, Zverlov, Vladimir V., Schwarz, Wolfgang H., König, Helmut, Liebl, Wolfgang, Scherer, Paul, McHardy, Alice C., Sczyrba, Alexander, Klocke, Michael, Pühler, Alfred, and Schlüter, Andreas. “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”. Biotechnology for Biofuels 10.1 (2017): 264.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-09-06T09:18:55Z
MD5 Prüfsumme
efbe2c7a17b7e9376b8b378fe7265a03


Link(s) zu Volltext(en)
Access Level
OA Open Access

4 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

PCR-DGGE Analysis on Microbial Community Structure of Rural Household Biogas Digesters in Qinghai Plateau.
Han R, Yuan Y, Cao Q, Li Q, Chen L, Zhu D, Liu D., Curr Microbiol 75(5), 2018
PMID: 29234881
Dynamics of a Perturbed Microbial Community during Thermophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds.
Šafarič L, Shakeri Yekta S, Liu T, Svensson BH, Schnürer A, Bastviken D, Björn A., Microorganisms 6(4), 2018
PMID: 30314333

82 References

Daten bereitgestellt von Europe PubMed Central.

Characterization of the methanogenic Archaea within two-phase biogas reactor systems operated with plant biomass.
Klocke M, Nettmann E, Bergmann I, Mundt K, Souidi K, Mumme J, Linke B., Syst. Appl. Microbiol. 31(3), 2008
PMID: 18501543
Methanogenic population dynamics during semi-continuous biogas fermentation and acidification by overloading.
Blume F, Bergmann I, Nettmann E, Schelle H, Rehde G, Mundt K, Klocke M., J. Appl. Microbiol. 109(2), 2010
PMID: 20148997
Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants.
Nettmann E, Bergmann I, Pramschufer S, Mundt K, Plogsties V, Herrmann C, Klocke M., Appl. Environ. Microbiol. 76(8), 2010
PMID: 20154117
Quantification of syntrophic acetate-oxidizing microbial communities in biogas processes.
Westerholm M, Dolfing J, Sherry A, Gray ND, Head IM, Schnurer A., Environ Microbiol Rep 3(4), 2011
PMID: 23761313
Microbial communities involved in biogas production from wheat straw as the sole substrate within a two-phase solid-state anaerobic digestion.
Heeg K, Pohl M, Sontag M, Mumme J, Klocke M, Nettmann E., Syst. Appl. Microbiol. 37(8), 2014
PMID: 25467556
Dynamic variation of the microbial community structure during the long-time mono-fermentation of maize and sugar beet silage.
Klang J, Theuerl S, Szewzyk U, Huth M, Tolle R, Klocke M., Microb Biotechnol 8(5), 2015
PMID: 25712194
Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome.
Theuerl S, Kohrs F, Benndorf D, Maus I, Wibberg D, Schluter A, Kausmann R, Heiermann M, Rapp E, Reichl U, Puhler A, Klocke M., Appl. Microbiol. Biotechnol. 99(18), 2015
PMID: 25998656
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions.
Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S, Rottmann N, Siebner C, Puhler A, Schluter A., Biotechnol Biofuels 8(), 2015
PMID: 25688290
Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery.
Goux X, Calusinska M, Lemaigre S, Marynowska M, Klocke M, Udelhoven T, Benizri E, Delfosse P., Biotechnol Biofuels 8(), 2015
PMID: 26288654
Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing.
Jaenicke S, Ander C, Bekel T, Bisdorf R, Droge M, Gartemann KH, Junemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Puhler A, Schluter A, Goesmann A., PLoS ONE 6(1), 2011
PMID: 21297863
Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.
Wirth R, Kovacs E, Maroti G, Bagi Z, Rakhely G, Kovacs KL., Biotechnol Biofuels 5(), 2012
PMID: 22673110
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation.
Hanreich A, Schimpf U, Zakrzewski M, Schluter A, Benndorf D, Heyer R, Rapp E, Puhler A, Reichl U, Klocke M., Syst. Appl. Microbiol. 36(5), 2013
PMID: 23694815
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.
Bremges A, Maus I, Belmann P, Eikmeyer F, Winkler A, Albersmeier A, Puhler A, Schluter A, Sczyrba A., Gigascience 4(), 2015
PMID: 26229594
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum SP, Jaenicke S, Fracowiak J, Puhler A, Schluter A., J. Biotechnol. 231(), 2016
PMID: 27312700
Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.
Campanaro S, Treu L, Kougias PG, De Francisci D, Valle G, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26839589
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates.
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, Jaenicke S, Goesmann A, Sczyrba A, Scherer P, Konig H, Schwarz WH, Zverlov VV, Liebl W, Puhler A, Schluter A, Klocke M., Biotechnol Biofuels 9(), 2016
PMID: 27525040
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant.
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, Konig H, Puhler A, Schluter A., J. Biotechnol. 168(4), 2013
PMID: 24184088
Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor.
Hahnke S, Striesow J, Elvert M, Mollar XP, Klocke M., Int. J. Syst. Evol. Microbiol. 64(Pt 8), 2014
PMID: 24860110
Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium.
Stantscheff R, Kuever J, Rabenstein A, Seyfarth K, Droge S, Konig H., Appl. Microbiol. Biotechnol. 98(12), 2014
PMID: 24639207

AUTHOR UNKNOWN, 0
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant.
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, Konig H, Puhler A, Schluter A., J. Biotechnol. 203(), 2015
PMID: 25801333
Draft genome sequence of Herbinix hemicellulosilytica T3/55 T, a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 214(), 2015
PMID: 26253960
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor.
Hahnke S, Maus I, Wibberg D, Tomazetto G, Puhler A, Klocke M, Schluter A., J. Biotechnol. 193(), 2014
PMID: 25444871
Isolation of acetic, propionic and butyric acid-forming bacteria from biogas plants.
Cibis KG, Gneipel A, Konig H., J. Biotechnol. 220(), 2016
PMID: 26779817
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, Konig H, Puhler A, Schluter A., J. Biotechnol. 232(), 2016
PMID: 27165504
Draft genome sequence of Propionispora sp. strain 2/2-37, a new xylan-degrading bacterium isolated from a mesophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W., 2016

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Release LTPs104 of the All-Species Living Tree.
Munoz R, Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R., Syst. Appl. Microbiol. 34(3), 2011
PMID: 21497273
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23193283
ARB: a software environment for sequence data.
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH., Nucleic Acids Res. 32(4), 2004
PMID: 14985472
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Puhler A, Schluter A., J. Biotechnol. 155(1), 2011
PMID: 21329740
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
dbCAN: a web resource for automated carbohydrate-active enzyme annotation.
Yin Y, Mao X, Yang J, Chen X, Mao F, Xu Y., Nucleic Acids Res. 40(Web Server issue), 2012
PMID: 22645317
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Puhler A, Sczyrba A, Schluter A., Biotechnol Biofuels 9(), 2016
PMID: 27462367
FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.
Niu B, Zhu Z, Fu L, Wu S, Li W., Bioinformatics 27(12), 2011
PMID: 21505035
Mash: fast genome and metagenome distance estimation using MinHash.
Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM., Genome Biol. 17(1), 2016
PMID: 27323842
RefSeq microbial genomes database: new representation and annotation strategy.
Tatusova T, Ciufo S, Fedorov B, O'Neill K, Tolstoy I., Nucleic Acids Res. 42(Database issue), 2013
PMID: 24316578
Near-optimal probabilistic RNA-seq quantification.
Bray NL, Pimentel H, Melsted P, Pachter L., Nat. Biotechnol. 34(5), 2016
PMID: 27043002
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.
Zakrzewski M, Goesmann A, Jaenicke S, Junemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sorensen S, Puhler A, Schluter A., J. Biotechnol. 158(4), 2012
PMID: 22342600
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms.
Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Puhler A, Klocke M, Schluter A., Biotechnol Biofuels 6(1), 2013
PMID: 23557021
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota.
Lagier JC, Hugon P, Khelaifia S, Fournier PE, La Scola B, Raoult D., Clin. Microbiol. Rev. 28(1), 2015
PMID: 25567229
Isolation and characterisation of Methanogenium bourgense sp. nov
Ollivier BM, Mah RA, Garcia JL, Boone DR., 1986
Isolation and characterization of Methanobacterium formicicum MF
Bryant MP, Boone DR., 1987
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 188(), 2014
PMID: 25173616
Herbinix hemicellulosilytica gen. nov., sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Ludwig W, Wanner G, Zverlov VV, Liebl W, Schwarz WH., Int. J. Syst. Evol. Microbiol. 65(8), 2015
PMID: 25872956
Herbinix luporum sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Hahnke S, Zverlov VV., Int. J. Syst. Evol. Microbiol. 66(10), 2016
PMID: 27453473
Mobilitalea sibirica gen. nov., sp. nov., a halotolerant polysaccharide-degrading bacterium.
Podosokorskaya OA, Bonch-Osmolovskaya EA, Beskorovaynyy AV, Toshchakov SV, Kolganova TV, Kublanov IV., Int. J. Syst. Evol. Microbiol. 64(Pt 8), 2014
PMID: 24827706
Bacillus thermoamylovorans sp. nov., a moderately thermophilic and amylolytic bacterium
Combet-Blanc Y, Ollivier B, Streicher C, Patel BKC, Dwivedi PP, Pot B., 1995
Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus.
Ezaki T, Kawamura Y, Li N, Li ZY, Zhao L, Shu S., Int. J. Syst. Evol. Microbiol. 51(Pt 4), 2001
PMID: 11491354
Propionispora hippei sp. nov., a novel Gram-negative, spore-forming anaerobe that produces propionic acid.
Abou-Zeid DM, Biebl H, Sproer C, Muller RJ., Int. J. Syst. Evol. Microbiol. 54(Pt 3), 2004
PMID: 15143048
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 168(1), 2013
PMID: 23968723
Characterization of microbial compositions in a thermophilic chemostat of mixed culture fermentation.
Zhang F, Yang JH, Dai K, Chen Y, Li QR, Gao FM, Zeng RJ., Appl. Microbiol. Biotechnol. 100(3), 2015
PMID: 26563549
Analysis of propionate-degrading consortia from agricultural biogas plants
Ahlert S, Zimmermann R, Ebling J, König H., 2016
Production of 2,3-butanediol from glucose byBacillus licheniformis.
Nilegaonkar S, Bhosale SB, Kshirsagar DC, Kapadi AH., World J. Microbiol. Biotechnol. 8(4), 1992
PMID: 24425506
Influence of lactic acid on the two-phase anaerobic digestion of kitchen wastes.
Zhang B, Cai WM, He PJ., J Environ Sci (China) 19(2), 2007
PMID: 17915737
NAD-specific 6-phosphogluconate dehydrogenase in lactic acid bacteria.
Ohara H, Uchida K, Yahata M, Kondo H., Biosci. Biotechnol. Biochem. 60(4), 1996
PMID: 8829540
How to make a living by exhaling methane.
Ferry JG., Annu. Rev. Microbiol. 64(), 2010
PMID: 20528692

Boone DR, Castenholz RW., 2001
Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea.
Kaster AK, Moll J, Parey K, Thauer RK., Proc. Natl. Acad. Sci. U.S.A. 108(7), 2011
PMID: 21262829
Hydrogen partial pressures in a thermophilic acetate-oxidizing methanogenic coculture
Lee MJ, Zinder SH., 1998
RNA-Seq gene expression estimation with read mapping uncertainty.
Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN., Bioinformatics 26(4), 2009
PMID: 20022975
Genomic insights that advance the species definition for prokaryotes.
Konstantinidis KT, Tiedje JM., Proc. Natl. Acad. Sci. U.S.A. 102(7), 2005
PMID: 15701695
Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB)
Manzoor S, Schnürer A, Bongcam-Rudloff E, Müller B., 2016
Amphibacillus xylanus hen. Nov., sp. nov., a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone, and catalase
Nimura Y, Koh E, Yanadiga F, Suzuki KI, Komagata K, Kozaki M., 1990
Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge.
Shiratori H, Sasaya K, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K., Int. J. Syst. Evol. Microbiol. 59(Pt 7), 2009
PMID: 19542130
Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.
Holden MT, Hauser H, Sanders M, Ngo TH, Cherevach I, Cronin A, Goodhead I, Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Croucher NJ, Chieu TB, Mai NT, Diep TS, Chinh NT, Kehoe M, Leigh JA, Ward PN, Dowson CG, Whatmore AM, Chanter N, Iversen P, Gottschalk M, Slater JD, Smith HE, Spratt BG, Xu J, Ye C, Bentley S, Barrell BG, Schultsz C, Maskell DJ, Parkhill J., PLoS ONE 4(7), 2009
PMID: 19603075
Complete genome sequence of Herbinix luporum SD1D, a new cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W., 2016
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant.
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Puhler A, Schwarz WH, Liebl W, Schluter A., J. Biotechnol. 192 Pt A(), 2014
PMID: 25270021
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MF(T.).
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Puhler A, Konig H, Schluter A., J. Biotechnol. 192 Pt A(), 2014
PMID: 25270020
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants.
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, Konig H, Puhler A, Schluter A., J. Biotechnol. 201(), 2014
PMID: 25455016
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 29158776
PubMed | Europe PMC

Suchen in

Google Scholar